lowQualScore : 44444 3333333 1 2 222 1111 1111 1111 111111 1111 1 222222222 222222222222222222 11 5555555555 11 1111111 11111 33333333333333333 111 111111 11 1 1111 2222 11 11 1111 33333333333333333333333333333333 22 1 11 1 11 5555555555555555555 1111
lowQualScore : 66666 8 6 7777777 3 6 6 0 5 222 3333 0000 5 0000 66 444444 5 77 5555 5555 777 3 4 4 4 4 000000000 2 2 5 5 11 4 0 333333333333333333 8 5 77 55 8888888888 11 5555555 4 4 55555 999999 5 11111111111111111 5 5 555 77 777777 4 33 5 1 3 3 5 4444 0000 33 3 00 9 8888 6 44444444444444444444444444444444 6 3 99 6 9 0 5 66 22 7 7 9 5 77 7 5 77 0 55 5 5 5 6 8 8 8888888888888888888 7777
lowQualScore : ..... . . ....... . . . . . ... .... .... . .... .. ...... . .. .... .... ... . . . . . ......... . . . . .. . . .................. . . .. .. .......... .. ....... . . ..... ...... . ................. . . ... .. ...... . .. . . . . . .... .... .. . .. . .... . ................................ . . .. . . . . .. .. . . . . .. . . .. . .. . . . . . . ................... ....
lowQualScore : 00000 0 6 6666666 0 4 7 0 7 666 3333 6666 0 6666 99 444444 0 22 4444 6666 888 4 4 0 4 1 000000000 3 7 7 7 44 4 1 888888888888888888 0 0 88 66 8888888888 99 0000000 4 4 88888 888888 0 11111111111111111 7 7 777 99 444444 3 66 7 4 7 3 7 9999 3333 66 5 22 8 5555 7 22222222222222222222222222222222 7 5 22 7 3 7 7 55 77 3 5 3 7 99 3 7 66 0 55 0 0 0 5 0 0 0000000000000000000 0000
consensus : AAAAAACGA-CCCCCATTTT-ATATAC--CCGACAGCGAGNTGC-TTGAATTTAAATGTCCT-G--NAGGAAGAA--ATATGAG----TAC-ACC----TG--TATAA------A-GAAAATCAA-TAT-CTACA----CA---AATCGT-ACA-CCTAACCCTGACAG---------GTAGCTATATTNA-AAG-TCTTTACAGAGC-GTT--------AT----ATC-TGT-TATAT-NTT-CTGAAT-C-TGC-ACGA--TAT-AC----ACCGC-TGC-ACAT---T-CAC-GCC-AT-ATTCTC--T--T-AT-C--TTA-AAG-TG---CAA--AC-TNG--CCGCC--AT-CATT-AAAACG-GGAAACT-AAC-A-AGGT--AAGAGAAC-ATTAAAACA--T-ACT-TT-A-TTTA---CCA-----AGTT--A--A--A-CGA-TTAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC--TCCTTC-ACTCCTTCAT-GATA-TTC-A-T-TGTTTAGCTACATT-GT-A-------C----AAT----TGTGCAT----ACCCTTACCGGG
Reference ( gi|3 ) : AAAAAAC---CTCCCATTTT-ATAAAC--CT--TAGTGAGATGC-T-AAATTTAAATGTCCT-G--AAGGAAGAG--ATATGAG----TAC-ACC----TG--TATAA------A-GAAAATCAA-TAT-CTACA----CA---AACCGT-ATA-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAAAGC-GTT--------AT----ATC-TGT-TCTAT-GTT-CTGAATTCTTAC-ATGA--TAT-GC----ACCGC-TGC-ACAT---T-CAC-GTC-AT-ATCCTG--T--T-AT-C--TTA-AAG-TG---CAA--AC-TGG--CTGCC--AT-CATT-AGAATA-GGAAGCT-AAT-A-AGGT--AAGAAAAT-ATTAAAACA--TAACT-TT-A-TTTA---CCA-----AGTT--A--A--A-TGA-TTAAT--T-GAAAGTTGGAA-GAGGGT-AGACATAACTAAGAAT-TTC--TCGTTC-ACTATTTCAT-GATA-ATC-A-T-TGTTTAGTTACATT-GT-A-------C----A------TGTGCAT----ACCCTTACCGGG
gi|6 : AAAGAACGAACCCCAATTTT-AGATACTCCA--CAGCGAG-TGT-T-GA-TTTA--TGTCCT-GTTAGGGAAGAA--ATATGAGGTATTAC-CCC----TG--GTTAA------AGGAAAATCAA--ATCCTACACCCCCA---AATCGT-ACACCCTAA-CCTGAC
gi|9 : cgcccAAAAACAA-CCCCCATTTT-ATATAC--TCGACAGCGAGGTGC-TTGAATTTAAATGTCCT-G--TAGGAAGAA--ATATGAG----TAT-ACC----TG--TA---------A-GAAAATCAA-TAT-CTACA----CA---AATCGT-ACA-CCTAACCCTGACAG---------GTAGCTATATTGA-AAG-TCTTTACAAAGC-GGT--------AT----A----GTACCTAT-GTT-Cccagagaaaaaaccccaaattgtgtttcgttggattgtatcgttagcctaaattgaaagtccattacaaaacccgtgttgtgagtcagcaacactgctctttaaacccttcccgagcaaatattcaaacgaaataaacaccgtctctttgtgcacatataccatggcatgattctgtgttctccattaaagtgcaaacttggccctgccatcattaaaaacagaaaacgaacataggta
gi|2 : cccAAAAC---ACCCCATTTT-ATATAC--TCGACAGCGAGGTGC-TTGAATTTTAATGTCCT-GT-AAGGAAGAAGAATATG--------C-ACCGTTTTGAGTATAAGTCTGTA-AGAAATCAAATAT-ATACA----CA---AATCGT-A-A---TAACGCTGAAGG---------ATAG-TATATTGA-AGT-TCTTTAC-AAGC-GGT--------ATA---AGT-TGT-TATAT--TT-CTGAA-----GC-ACGA--TAT-CC----AACGC-TG--ACAT---T-CAT-AGC-AT-AT-TTC--T--T-ATAT--TTAGAAG-TGTTTC-A--AC-TTG--CCG-C--AT-CATT-AAAAAG-AAAAG---AACGA-AGGT--AAGAGAAC-ATTAGAAAT--TAATT-TG-A-CC-----CTA-----AATT--AT-AGTA-TGA-TAAGT--T-GGAA-TTCGAA-GAGGGA-AG--ATAATTAA-AATGTTC--TC--TC-AC--CTTCAT-GATA-TTCAA-T-TTTTTAGTT-CATgttttctgtttttaatga
gi|1 : CCCATTTTTATAAAC--CT--CAGTGAGCTGCTT-AAATTTAAATGTCCTAG--TAAGAAGAG----ATCAG----TACAACC----T---TATAA------A-GAAAATCAA-AAT-CGACAAC--CAATCAACTAT-A-A-CCTAACCCTGACAAGGCCTACCTGTAGCTATATTTAGAAG-TCTTTACAGAGC-GTT--------ATA---ATCTTGT-TCTATCGTT--TGAA----TGC-ACGA--TATAGC----ACCACTTGCAACAT---T-CACAGCC-AT-AT--TGACT--TAAT-C--TTA-AAG-TG---CAA--AC---A--TTGCCGTAT-CATT-AGAATAGGGAAACT-AGT-A-AAG---AAGAACAT--TGAAAACA--TTTCT-TTAA-TTTAACGCAA-----AGTTAAA--A--A-CGATTTAAT--T-GAAAGTTGGAA-GAGAG--AGACA-AATTAAGAAT-TTC--TCCTTCTACTCTTTCAT-GAT--ATC-A-TCTGTTTA-CTACATTGGTAA-------C----AAT----CGT-CAT----ATCCTTACCGGGagagtaaagcttacgtacttgtttaactacaattgtacaattaaattgagaaaaattataattgctca
gi|8 : accattcTT-GTAAAC--CT--CAGCGAGCTGC-TTAAATTTAAATGT-------------------TATGAG----TAC-ACC----TG--TATAA------A-TGAAATCAA-TAT-C-----------------GT-ACA-CCTAA-------------------------TATTTA-AAG-CCTT--CGTAGT-GTT--------AT--------------------T-CTGAAATC-----ACGA--TAT-AC----ACCGC-TGC-GCAT---T-CAC-GCC-AT-ATTATT--T--T-AT-C--TTA-AAG-TG---CAA--AC-TTG--CCGCC--AT-CATT-AAAACA-GGAA-CT-AAC-A-AGGT--AAGAGAAC-ATT----------ACT-TTAA-TTTA---CCA-----AATT--A--A--A-CGA-TTAATTAT-AAAAGTTGGAA-Gtatttacaatcaaatgaggaaaaatgatataactgttca
gi|12 : ccc-T-AAATTTAAATGTCCT-G--CAGGAAGAG--AGATGAG----TAC-AGC----TG--TTTAA------A-GAAAATCAA-TAT-CTTTA----CA---AATCGT-ACA-CCTAACCCTGACAG---------GT
gi|11 : tCCT-G--TAAGAAGAC--ATATGAA----TAC-ACC----TG--TATAA------A-GAGAATCAA-CAT-TGTCA----CA---AACCAT-AGA-CCAAGTGCCGACAG---------GAATCTTTATTTG-AAT-TCTTTACAGAGCTGT----------T----ATC-TGT-TATAT-CTC-CTGAAT
gi|5 : ----TAC-ACC----TG--TATAC------A-GAAAATCAA-TAT-CTCTA----CA---AATCNN-NNN-NNNNNNNNNNNNNN---------NNNNNNNNNNNNN-NNN-NNNNNNNNNNNN-NNNNNNNNNNAAT----ATC-TGT-TCTAT-CTT-CTGAATG--TAC---GA--TAT-AC----ACCGC-TGC-ACAT---------AT---T-ATC-----T--T-AT-C--TTA-AAG-TG---CAA--AC-TGG--CCGCC--AT-CATT-GAAATG-GGAAACT-AA-----GGT--AAGAGAAC-ATTGAAACA--TTACT-TT-AATTTA---CCA-----AGTT--A--A--AACAA-TTAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTT--TCCTTC-ATGCTTTCAT-GATA-TTC-A-T-TGTTTAGCAACATT-GT-A-------CATGTA------TGTGCAT----ACCCTTACCGGGg
gi|4 : ACA----CA---AATCGTTACA-CCTA-CCCTGACAG---------GTAGCTATATTGA-AAGTTCTTTACAAAGC-GGT--------AT----AGC-TGT-TATATCATTACTGAA---ATGC-ACGAT-TAT-AC----ACCGC-T-C-A-AT---TGCAT-GCCAAT-ATCTTC--T--T-AT-A--TTA-AAG-TG---CAA--ACTTGC--CTGCCT-AT-CATTAAAAACA-GAAAACG-AACAA-AGGTAAAAGAGAACGATTAAAACATCTGACTCCT-A----A---CCA-----A-TT--A--G--ATTGA-T--AT--TGGAGAATTCGAACGAGGGA-AAGAATA--TAAAATT-TTCATCCATAC-ACCTCTTCATAGATA-ATC-A-T-TGTTTAG-TACATtatttataaatcaaatgaggaaaatgatattgttca
gi|14 : aattagaattagacaaTACAGAGC-GTT--------AT----ATT-TGT-TCTAT-CTT-TTGAGT----GC-ACGA--TAT-AC----ACCGC-TGC-ACAT---T-CAC-ACC-AT-ATagagattaaaagctttacgtctaatgtttaactacattgttacaatcaaatgcagaaaaattatttgctcaatattc
gi|2 : AGC-GTT--------ATTACGATT-TGTGTATAT-ATT--TGATTTCTTAC-A-GACTTAT-ACTCAAAACGG-TGC-ATAT---T-Ct
gi|7 : aaaacaccccattttatatactcgacagcgaggtgcttgaattttaatgtcctgtaaggaagaaC-TGT-TATAT-ATT-CTGAATGC--ACGATGA--TA---A----ACCGC-TGC-ACAT------AT-GCC-AT-ATTCTC--T--T-A-------A-AAGCTGT--CAGATAC-TTG--CCG-C--ATCCATT-AAAACA-GAAAACCGAAC-A-AGGTA-AAGAGAAC-ATT-AAACA--T-ACT-TT-C-CTAA---CCATACTTAGTTTGAGCA--A-TG---TAGT--T-GAGA-TTCGAA-GAGGGGAAGATA-AATTAA-AAT-TTT--TCCATC-ACCACTTCATAAATATTTC-ATT-TGTTTAGTTgaaggatagtatattgaagttctttacaagcggtataagttgttatatttctgaagcacgatatccaacgctgacattcatagcatatttcttatatttagaagtgtttcaacttgccgcatcattaaaaagaaaagaacgaaggtaagagaacattagaaattaatttgaccctaaattatagtatgataagttggaattcgaagagggaagataattaaaatgttctctcaccttcatgatattcaattttttagttcatagagtaaagcttacgtacttgtttaactacaattgtacaattaaattgagaaaaattataattgctca
gi|6 : g-TGC-ACATATAC-CAT-GGC-ATGATTCTG--TGTT-CT-CCATTA-AAG-TG---CAA--ACTTGGCCCTGCC--AT-CATTAAAAACA-GAAAACG-AAC-ATAGGT--Atccatagacgtaagcttacgtctatgtttaactacattgtaaatctgaaatggaaaaattaatatgctca
gi|10 : cgcccaaagaacgaaccccaattttagatactccacagcgagtgttgatttatgtcctgttagggaagaaatatgaggtattacccctggttaaaggaaaatcaaatcctacacccccaaatcgtacaccctaacctgacccagagaaaaaaccccaaattgtgtttcgttggattgtatcgttagcctaaattgaaagtccattacaaaacccgtgttgtgagtcagcaacactgctctttaaacccttcccgagcaaatattcaaacgaaataaacaccgtctctttgTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC--CCCTTC-ACTCTTTCAT-GATA-TTC-T-T-TGTTTAGCTACACT-GT-ACATACACC----A------TGTGCATTATAATCCTTACCGGG
gi|13 : AAT-TTC--TCCTTC-ACTCTTTCAC-GATA-TTC-A-T-TGTGTAGCTACAAT-GT-A-------C----A------TGTGCAT----ACCCTTACCGGGtatttacaaatcttaatcaaatgaggaaaattatattgtt
gi|15 : -GATA-TGC-A-T-TGTTTAGCTACATT-GT-A-------C----AATATCATGTGCAT----ACCCTTACCGGGtatt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GGTAGGAGAACATTGAAACATTACTTTAATTTACC
Alignments
lowQualScore : 222 22 111 11111 111111 111111111 2222222222222222222222 11 444444 1111111 11111 1111 111 1 111 1 11 22222 2 11111 11 5555555 1111
lowQualScore : 222 8 6 4 22 7 1 5 444 9999 9999 4 4 11111 2 222222 4 4 1 4 22 4 8888 99 55 4 2 777777777 0 1 5 5 2 4 4444444444444444444444 5 00 4 777777 4 4 4 8888888 4 55555 4 0 4 4 7 66 5 0000 5 5 333 66 5 1 888 5 8 5 5 0 000 66 0 5 00 5 88 55555 5 0 5 888 66 44444 77 33 5 77 5 5 77 77 5 6 5 5 0 5 6 5 5 5 5 0 8 66 4 4 4 0 6 6 9999999 4444
lowQualScore : ... . . . .. . . . ... .... .... . . ..... . ...... . . . . .. . .... .. .. . . ......... . . . . . . ...................... . .. . ...... . . . ....... . ..... . . . . . .. . .... . . ... .. . . ... . . . . . ... .. . . .. . .. ..... . . . ... .. ..... .. .. . .. . . .. .. . . . . . . . . . . . . . .. . . . . . . ....... ....
lowQualScore : 222 0 7 0 22 5 7 0 666 6666 4444 4 4 11111 2 888888 4 4 0 4 88 0 5555 55 88 0 7 888888888 8 0 0 0 1 4 0000000000000000000000 5 33 0 111111 4 4 4 9999999 4 88888 4 1 4 4 6 99 0 1111 0 0 888 99 0 0 888 0 8 0 0 0 444 99 0 0 66 0 99 99999 0 0 0 888 99 33333 44 66 7 99 7 7 44 99 7 6 0 7 1 0 6 0 0 0 0 8 9 77 4 4 4 9 7 7 7777777 2222
consensus : AAAAAACGACCCCCA-TTTT-ATANACCC-ACAGCGAGNTGCTTGAATTTAAATGTCCT-G--NAGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------A-GAAAATC-AATAT-CTAC-A----CAAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAGAGC-GTT--------AT-A-----TC-TGTTATAT-CTT-CTGAA-T---TGCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-GCC-AT-ATTNTCT--T-AT-C--TTA-AAG-TG---CAA--AC-TTG---CC-GCC-AT-CATT-AAAAC-GGGAAACN-AAC-A-AGGT--AAGAGAAC-ATT-AAAACATT---ACT-TTAATTT-A---CC--A-----AG-TT--A-A--A-CGA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-TCC-TTC-ACTCTTTCAT-GATA-TTC-A-T-TGTTTAGCTACATT-GT-ACA-ATA---TGTGCAT----ACCCTTACCGGG
Reference ( family-5441 ) : AAAAAACGACCCCCA-TTTT-ATATACCCGACAGCGAGNTGCTTGAATTTAAATGTCCT-G--NAGGAAGA--AATATGAG----TAC-ACC-T-----GTATAA------A-GAAAATC-AATAT-CTAC-A----CAAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTNA-AAG-TCTTTACAGAGC-GTT--------AT-A-----TC-TGTTATAT-NTT-CTGAA-T--CTGCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-GCC-AT-ATTCTCT--T-AT-C--TTA-AAG-TG---CAA--AC-TNG---CC-GCC-AT-CATT-AAAAC-GGGAAACT-AAC-A-AGGT--AAGAGAAC-ATT-AAAACA-T---ACT-TT-ATTT-A---CC--A-----AG-TT--A-A--A-CGA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-TCC-TTC-ACTCCTTCAT-GATA-TTC-A-T-TGTTTAGCTACATT-GT-ACA-AT----TGTGCAT----ACCCTTACCGGG
gi|1 : CCCCA-TTTTTATAAACCT--CAGTGAGCTGCTTAAATTTAAATGTCCTAG--TAAGAAGA--G--ATCAG----TACAACC-T------TATAA------A-GAAAATC-AAAAT-CGACAA----CCAATCAACTATAA-CCTAACCCTGACAAGGCCTACCTGTAGCTATATTTAGAAG-TCTTTACAGAGC-GTT--------ATAA-----TCTTGTTCTAT-CGT-TTGAA-----TGCACGA-T-ATAGCACCACT------TGCAACAT---T-CACAGCC-AT-ATTGACT--TAAT-C--TTA-AAG-TG---CAA--ACATTG---CC-G-T-AT-CATT-AGAATAGGGAAACT-AGT-A-AAG-----AAGAAC-ATTGAAAACATT---TCT-TTAATTT-AACGCA--A-----AG-TTAAA-A--A-CGATT-TAAT--T-GAAAGTTGGAA-GA-GAG-AGACA-AATTAAGAAT-TTC-TCC-TTCTACTCTTTCAT-GATA--TC-A-TCTGTTTA-CTACATTGGTAACA-AT----CGT-CAT----ATCCTTACCGGG
gi|10 : accattTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-CCC-TTC-ACTCTTTCAT-GATA-TTC-T-T-TGTTTAGCTACACT-GT-ACATACACCATGTGCATTATAATCCTTACCGGGtatttacaatcaaatgaggaaaaatgatataactgttca
gi|11 : CCT-G--TAAGAAGA--CATATGAA----TAC-ACC-T-----GTATAA------A-GAGAATC-AACAT-TGTC-A----CAAACCA--TAG-A-CCAAGTGCCGACAG---------GAATCTTTATTTG-AAT-TCTTTACAGAGCTGT----------T-A-----TC-TGTTATAT-CTC-CTGAA-T--tatttacaaatcttaatcaaatgaggaaaattatattgtt
gi|12 : TTAAATTTAAATGTCCT-G--CAGGAAGA--GAGATGAG----TAC-AGC-T-----GTTTAA------A-GAAAATC-AATAT-CTTT-A----CAAATCG--TAC-A-CCTAACCCTGACAG---------GTg
gi|13 : AAT-TTC-TCC-TTC-ACTCTTTCAC-GATA-TTC-A-T-TGTGTAGCTACAAT-GT-ACA-------TGTGCAT----ACCCTTACCGGG
gi|14 : TACAGAGC-GTT--------AT-A-----TT-TGTTCTAT-CTT-TTGAG-T----GCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-ACC-AT-ATTtatt
gi|15 : -GATA-TGC-A-T-TGTTTAGCTACATT-GT-ACA-ATATCATGTGCAT----ACCCTTACCGGG
gi|16 : GGT--AGGAGAAC-ATT-GAAACATT---ACT-TTAATTT-A---CC--tattta
gi|2 : AAAACA--CCCCA-TTTT-ATATACTCGACAGCGAGGTGCTTGAATTTTAATGTCCT-GT-AAGGAAGAAGAATATG--------C-ACCGTTTTGAGTATAAGTCTGTA-AGAAATCAAATAT-ATAC-A----CAAATCG--TA--A---TAACGCTGAAGG---------ATAG-TATATTGA-AGT-TCTTTACA-AGC-GGT--------ATAA-----GT-TGTTATAT--TT-CTGAA------GCACGA-T-ATC-CAACGC-------TG--ACAT---T-CAT-AGC-AT-ATT-TCT--T-ATAT--TTAGAAG-TGTTTC-A--AC-TTG---CC-G-C-AT-CATT-AAAA---AGAAAAG-AACGA-AGGT--AAGAGAAC-ATT-AGAA-A-------T-TA-ATTTGA---CCCTA-----AA-TT--ATAGTA-TGA-T-AAGT--T-GGAA-TTCGAA-GAGGGA-AG--ATAATTAA-AATGTTC-TC---TC-A--CCTTCAT-GATA-TTCAA-T-TTTTTAGTT-CAT
gi|3 : AAAAAAC--CTCCCA-TTTT-ATAAACCT--TAGTGAGATGCT-AAATTTAAATGTCCT-G--AAGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------A-GAAAATC-AATAT-CTAC-A----CAAACCG--TAT-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAAAGC-GTT--------AT-A-----TC-TGTTCTAT-GTT-CTGAA-TTCTTACATGA-T-ATG-CACCGC-------TGC-ACAT---T-CAC-GTC-AT-ATCCTGT--T-AT-C--TTA-AAG-TG---CAA--AC-TGG---CT-GCC-AT-CATT-AGAAT-AGGAAGCT-AAT-A-AGGT--AAGAAAAT-ATT-AAAACA-TA--ACT-TT-ATTT-A---CC--A-----AG-TT--A-A--A-TGA-T-TAAT--T-GAAAGTTGGAA-GAGGGT-AGACATAACTAAGAAT-TTC-TCG-TTC-ACTATTTCAT-GATA-ATC-A-T-TGTTTAGTTACATT-GT-ACA-------TGTGCAT----ACCCTTACCGGGagagtaaagcttacgtacttgtttaactacaattgtacaattaaattgagaaaaattataattgctca
gi|4 : AC-A----CAAATCGT-TAC-A-CCT-ACCCTGACAG---------GTAGCTATATTGA-AAGTTCTTTACAAAGC-GGT--------AT-A-----GC-TGTTATATCATTACTGAA----ATGCACGATT-ATA-CACCGC-------T-C-A-AT---TGCAT-GCCAAT-ATCTTCT--T-AT-A--TTA-AAG-TG---CAA--AC-TTG---CCTGCCTAT-CATTAAAAAC-AGAAAACG-AACAA-AGGTAAAAGAGAACGATT-AAAACA-TCTGACTCCT-A----A---CC--A-----A--TT--A-G--ATTGA-T---AT--TGGAGAATTCGAACGAGGGA-AAGAATA--TAAAATT-TTCATCCATAC-ACCTCTTCATAGATA-ATC-A-T-TGTTTAG-TACAT
gi|5 : aattagaattagacaa----TAC-ACC-T-----GTATAC------A-GAAAATC-AATAT-CTCT-A----CAAATCN--NNN-N-NNNNNNNNNNNNNN---------NNNNNNNNNNNNN-NNN-NNNNNNNNNNNN-NNNNNNNNNNAAT-A-----TC-TGTTCTAT-CTT-CTGAA-T----GTACGA-T-ATA-CACCGC-------TGC-ACAT----------------ATTATCT--T-AT-C--TTA-AAG-TG---CAA--AC-TGG---CC-GCC-AT-CATT-GAAAT-GGGAAACT-----A-AGGT--AAGAGAAC-ATT-GAAACATT---ACT-TTAATTT-A---CC--A-----AG-TTA-A-A--A-CAA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTT-TCC-TTC-ATGCTTTCAT-GATA-TTC-A-T-TGTTTAGCAACATT-GT-ACATGTA---TGTGCAT----ACCCTTACCGGGagagattaaaagctttacgtctaatgtttaactacattgttacaatcaaatgcagaaaaattatttgctcaatattc
gi|6 : AAAGAACGAACCCCAATTTT-AGATACTCCACAGCGAG-TG-TTG-ATTT--ATGTCCT-GTTAGGGAAGA--AATATGAGGTATTAC-CCC-T-----GGTTAA------AGGAAAATC-AA-ATCCTAC-ACCCCCAAATCG--TAC-ACCCTAA-CCTGACtatttataaatcaaatgaggaaaatgatattgttca
gi|6 : cgcccA-T-AAA-CACCGTCTCTTTGTGC-ACATATAC-CAT-GGC-ATGATTCTGTGTT-CT-CCATTA-AAG-TG---CAA--AC-TTGGCCCT-GCC-AT-CATTAAAAAC-AGAAAACG-AAC-ATAGGT--Accagagaaaaaaccccaaattgtgtttcgttggattgtatcgttagcctaaattgaaagtccattacaaaacccgtgttgtgagtcagcaacactgctctttaaacccttcccgagcaaatattcaaacgaaataaacaccgtctctttgtgcacatataccatggcatgattctgtgttctccattaaagtgcaaacttggccctgccatcattaaaaacagaaaacgaacataggta
gi|7 : cgcccaaagaacgaaccccaattttagatactccacagcgagtgttgatttatgtcctgttagggaagaaatatgaggtattacccctggttaaaggaaaatcaaatcctacacccccaaatcgtacaccctaacctgacccagagaaaaaaccccaaattgtgtttcgttggattgtatcgttagcctaaattgaaagtccattacaaaacccgtgttgtgagtcagcaacactgctctttaaacccttcccgagcaaatattcaaacgaaC-TGTTATAT-ATT-CTGAA-T----GCACGA-TGATA-AACCGC-------TGC-ACAT------AT-GCC-AT-ATTCTCT--T-A-------A-AAGCTGT--CAGATAC-TTG---CC-G-C-ATCCATT-AAAAC-AGAAAACCGAAC-A-AGGTA-AAGAGAAC-ATT--AAACA-T---ACT-TT-CCTA-A---CC--ATACTTAGTTT--G-A--G-CAA-TGTAGT--T-GAGA-TTCGAA-GAGGGGAAGATA-AATTAA-AAT-TTT-TCC-ATC-ACCACTTCATAAATATTTC-ATT-TGTTTAGTT
gi|8 : gTT-GTAAACCT--CAGCGAGCTGCTTAAATTTAAATGT-------------------TATGAG----TAC-ACC-T-----GTATAA------A-TGAAATC-AATAT-C---------------G--TAC-A-CCTAA-------------------------TATTTA-AAG-CCTTCGTAG---------------------------TGTTAT-----T-CTGAAAT--C---ACGA-T-ATA-CACCGC-------TGC-GCAT---T-CAC-GCC-AT-ATTATTT--T-AT-C--TTA-AAG-TG---CAA--AC-TTG---CC-GCC-AT-CATT-AAAAC-AGG-AACT-AAC-A-AGGT--AAGAGAAC-AT---------T---ACT-TTAATTT-A---CC--A-----AA-TT--A-A--A-CGA-T-TAATTAT-AAAAGTTGGAA-Gtccatagacgtaagcttacgtctatgtttaactacattgtaaatctgaaatggaaaaattaatatgctca
gi|9 : cccAAAAACAACCCCCA-TTTT-ATATACTCGACAGCGAGGTGCTTGAATTTAAATGTCCT-G--TAGGAAGA--AATATGAG----TAT-ACC-T-----GT---A------A-GAAAATC-AATAT-CTAC-A----CAAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTGA-AAG-TCTTTACAAAGC-GGT--------AT-AGTACCTA-TGTT-CGT-TTT-CTG
Alignments
lowQualScore : 222 22 1111 11111 111111 111111111 1111111111 22222 1111111 11111 1111 111 1 111 11 1111 4444444444 1111
lowQualScore : 222 8 6 1 6 88 7 5 4444 9999 9999 4 4 11111 222222 4 4 1 777 4 8888 99 55 4 2 777777777 0 1 5 5 2 4 9999999999 8 4 1 88 4 77777 4 4 4 8888888 4 55555 4 0 4 4 5 66 5 0000 5 5 333 66 5 888 5 555 5 0 000 66 00 5 66 5 5 88 66 5 888 55 888 77 77 5 2222 5 77 77 5 6 5 5 0 5 6 5 5 5 5 0 8 66 4 4 4 0 6 6 7777777777 4444
lowQualScore : ... . . . . .. . . .... .... .... . . ..... ...... . . . ... . .... .. .. . . ......... . . . . . . .......... . . . .. . ..... . . . ....... . ..... . . . . . .. . .... . . ... .. . ... . ... . . ... .. .. . .. . . .. .. . ... .. ... .. .. . .... . .. .. . . . . . . . . . . . . . .. . . . . . . .......... ....
lowQualScore : 222 0 7 0 7 88 5 0 6666 2222 4444 4 4 11111 888888 4 4 0 222 0 5555 55 88 0 7 888888888 8 2 0 0 1 4 1111111111 9 4 7 33 4 88888 4 4 4 9999999 4 88888 4 1 4 4 9 99 0 1111 0 0 888 99 0 888 0 888 0 0 444 00 22 0 11 0 0 99 99 0 888 11 888 44 99 7 4444 7 44 99 7 6 0 7 1 0 6 0 0 0 0 8 9 77 4 4 4 9 7 7 0000000000 2222
consensus : AAAAAACGACCCCCA-TTTT-ATANAC-CC-ACAGCGAGNTGCTTGAATTTAAATGTCCT-G-T--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAGAGC-GTT--------AT-ATC-TGTTATATC-TT-CTGAA---TTGCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-GCC-AT-ATTNTCT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAAC-GGGAAACN-AAC-A-AGGT--AA-GAGAAC-ATT-AAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--A-CGA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-TCC-TTC-ACTCTTTCAT-GATA-TTC-A-T-TGTTTAGCTACATT-GT-ACA-A---T---ATGTGCAT----ACCCTTACCGGG
Reference ( family-5441 ) : AAAAAACGACCCCCA-TTTT-ATANAC-CC-ACAGCGAGNTGCTTGAATTTAAATGTCCT-G-N--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAGAGC-GTT--------AT-ATC-TGTTATATC-TT-CTGAA---TTGCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-GCC-AT-ATTNTCT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAAC-GGGAAACN-AAC-A-AGGT--AA-GAGAAC-ATT-AAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--A-CGA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-TCC-TTC-ACTCTTTCAT-GATA-TTC-A-T-TGTTTAGCTACATT-GT-ACA-A---T---ATGTGCAT----ACCCTTACCGGG
gi|1 : CCCCA-TTTTTATAAAC-CT--CAGTGAGCTGCTTAAATTTAAATGTCCTAG-T--AAGAAGA--G--ATCAG----TACAACC-T------TATAA------AG-AAAATC-AAAATC-GACAAC----CAATCAACTATAA-CCTAACCCTGACAAGGCCTACCTGTAGCTATATTTAGAAG-TCTTTACAGAGC-GTT--------ATAATCTTGTTCTATC-GT-TTGAA----TGCACGA-T-ATAGCACCACT------TGCAACAT---T-CACAGCC-AT-ATTGACT--TAAT-C--TTA-AAG-TG---CAAA--CATTG---CC-G-T-ATC-ATT-AGAATAGGGAAACT-AGT-A-AAG------AAGAAC-ATTGAAAACATT--TCT-T---TAATT-TAACGCAAAG-TTAAA-A--A-CGATT-TAAT--T-GAAAGTTGGAA-GA-GAG-AGACA-AATTAAGAAT-TTC-TCC-TTCTACTCTTTCAT-GATA--TC-A-TCTGTTTA-CTACATTGGTAACA-A---T----CGT-CAT----ATCCTTACCGGG
gi|10 : accattTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-CCC-TTC-ACTCTTTCAT-GATA-TTC-T-T-TGTTTAGCTACACT-GT-ACATACACC---ATGTGCATTATAATCCTTACCGGGtatttacaatcaaatgaggaaaaatgatataactgttca
gi|11 : CCT-G-T--AAGAAGA--CATATGAA----TAC-ACC-T-----GTATAA------AG-AGAATC-AACATT-GTC-AC----AAACCA--TAG-A-CCAAGTGCCGACAG---------GAATCTTTATTTG-AAT-TCTTTACAGAGCTGT----------T-ATC-TGTTATATC-TC-CTGAA---Ttatttacaaatcttaatcaaatgaggaaaattatattgtt
gi|12 : TTAAATTTAAATGTCCT-G-C--AGGAAGA--GAGATGAG----TAC-AGC-T-----GTTTAA------AG-AAAATC-AATATC-TTT-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTg
gi|13 : AAT-TTC-TCC-TTC-ACTCTTTCAC-GATA-TTC-A-T-TGTGTAGCTACAAT-GT-AC----------ATGTGCAT----ACCCTTACCGGG
gi|14 : TACAGAGC-GTT--------AT-ATT-TGTTCTATC-TT-TTGAG---T-GCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-ACC-AT-ATTtatt
gi|15 : -GATA-TGC-A-T-TGTTTAGCTACATT-GT-ACA-A---TATCATGTGCAT----ACCCTTACCGGG
gi|16 : GGT--AG-GAGAAC-ATT-GAAACATT--ACT-T---TAATT-TA---CCtattta
gi|2 : AAAACA--CCCCA-TTTT-ATATAC-TCGACAGCGAGGTGCTTGAATTTTAATGTCCT-GTA--AGGAAGAAGAATATG--------C-ACCGTTTTGAGTATAAGTCTGTAA-GAAATCAAATATA-TAC-AC----AAATCG--TA--A---TAACGCTGAAGG---------ATAG-TATATTGA-AGT-TCTTTACA-AGC-GGT--------ATAAGT-TGTTATAT--TT-CTGAA-----GCACGA-T-ATC-CAACGC-------TG--ACAT---T-CAT-AGC-AT-ATT-TCT--T-ATAT--TTAGAAG-TGTTTC-AA--C-TTG---CC-G-C-ATC-ATT-AAAA---AGAAAAG-AACGA-AGGT--AA-GAGAAC-ATT-AGAA-ATT--AAT-T---TGACC------CTAAA-TT--ATAGTA-TGA-T-AAGT--T-GGAA-TTCGAA-GAGGGA-AG--ATAATTAA-AATGTTC-TC---TC-A--CCTTCAT-GATA-TTCAA-T-TTTTTAGTT-CAT
gi|3 : AAAAAAC--CTCCCA-TTTT-ATAAAC-CT--TAGTGAGATGCT-AAATTTAAATGTCCT-G-A--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAACCG--TAT-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAAAGC-GTT--------AT-ATC-TGTTCTATG-TT-CTGAATTCTTACATGA-T-ATG-CACCGC-------TGC-ACAT---T-CAC-GTC-AT-ATCCTGT--T-AT-C--TTA-AAG-TG---CAAA--C-TGG---CT-GCC-ATC-ATT-AGAAT-AGGAAGCT-AAT-A-AGGT--AA-GAAAAT-ATT-AAAACATA--ACT-T---T-ATT-TA---CCAAG-TT--A-A--A-TGA-T-TAAT--T-GAAAGTTGGAA-GAGGGT-AGACATAACTAAGAAT-TTC-TCG-TTC-ACTATTTCAT-GATA-ATC-A-T-TGTTTAGTTACATT-GT-AC----------ATGTGCAT----ACCCTTACCGGGagagtaaagcttacgtacttgtttaactacaattgtacaattaaattgagaaaaattataattgctca
gi|4 : AC-AC----AAATCGT-TAC-A-CCT-ACCCTGACAG---------GTAGCTATATTGA-AAGTTCTTTACAAAGC-GGT--------AT-AGC-TGTTATATCATTACTGAA---ATGCACGATT-ATA-CACCGC-------T-C-A-AT---TGCAT-GCCAAT-ATCTTCT--T-AT-A--TTA-AAG-TG---CAAA--C-TTG---CCTGCCTATC-ATTAAAAAC-AGAAAACG-AACAA-AGGTAAAA-GAGAACGATT-AAAACATCTGACTCC---TA-----A---CCAA--TT--A-G--ATTGA-T---AT--TGGAGAATTCGAACGAGGGA-AAGAATA--TAAAATT-TTCATCCATAC-ACCTCTTCATAGATA-ATC-A-T-TGTTTAG-TACAT
gi|5 : aattagaattagacaa----TAC-ACC-T-----GTATAC------AG-AAAATC-AATATC-TCT-AC----AAATCN--NNN-N-NNNNNNNNNNNNNN---------NNNNNNNNNNNNN-NNN-NNNNNNNNNNNN-NNNNNNNNNNAAT-ATC-TGTTCTATC-TT-CTGAA---T-GTACGA-T-ATA-CACCGC-------TGC-ACAT----------------ATTATCT--T-AT-C--TTA-AAG-TG---CAAA--C-TGG---CC-GCC-ATC-ATT-GAAAT-GGGAAACT-AA-----GGT--AA-GAGAAC-ATT-GAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--AACAA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTT-TCC-TTC-ATGCTTTCAT-GATA-TTC-A-T-TGTTTAGCAACATT-GT-ACATG---T---ATGTGCAT----ACCCTTACCGGGagagattaaaagctttacgtctaatgtttaactacattgttacaatcaaatgcagaaaaattatttgctcaatattc
gi|6 : AAAGAACGAACCCCAATTTT-AGATACTCC-ACAGCGAG-TG-TTGA-TTTA--TGTCCT-G-TTAGGGAAGA--AATATGAGGTATTAC-CCC-T-----GGTTAA------AGGAAAATC-AA-ATCCTAC-ACCCCCAAATCG--TAC-ACCCTAA-CCTGACtatttataaatcaaatgaggaaaatgatattgttca
gi|6 : cgcccA-T-AAA-CACCGTCTCTTTGTGC-ACATATAC-CAT-GGC-ATGATTCTGTGTT-CT-CCATTA-AAG-TG---CAAA--C-TTGGCCCT-GCC-ATC-ATTAAAAAC-AGAAAACG-AAC-ATAGGT--Accagagaaaaaaccccaaattgtgtttcgttggattgtatcgttagcctaaattgaaagtccattacaaaacccgtgttgtgagtcagcaacactgctctttaaacccttcccgagcaaatattcaaacgaaataaacaccgtctctttgtgcacatataccatggcatgattctgtgttctccattaaagtgcaaacttggccctgccatcattaaaaacagaaaacgaacataggta
gi|7 : cgcccaaagaacgaaccccaattttagatactccacagcgagtgttgatttatgtcctgttagggaagaaatatgaggtattacccctggttaaaggaaaatcaaatcctacacccccaaatcgtacaccctaacctgacccagagaaaaaaccccaaattgtgtttcgttggattgtatcgttagcctaaattgaaagtccattacaaaacccgtgttgtgagtcagcaacactgctctttaaacccttcccgagcaaatattcaaacgaaC-TGTTATATA-TT-CTGAA---T-GCACGA-TGATA-AACCGC-------TGC-ACAT------AT-GCC-AT-ATTCTCT--T-A-------A-AAGCTGT--CAGATAC-TTG---CC-GC--ATCCATT-AAAAC-AGAAAACCGAAC-A-AGGT--AAAGAGAAC-ATT--AAACA-T--ACT-TTCCTAACCATA---CTTAGTTT--G-A--G-CAA-TGTAGT--T-GAGA-TTCGAA-GAGGGGAAGATA-AATTAA-AAT-TTT-TCC-ATC-ACCACTTCATAAATATTTC-ATT-TGTTTAGTT
gi|8 : gTT-GTAAAC-CT--CAGCGAGCTGCTTAAATTTAAATGT--------------------TATGAG----TAC-ACC-T-----GTATAA------AT-GAAATC-AATATC----------------G--TAC-A-CCTAA-------------------------TATTTA-AAG-CCTTCGTAG----------------------TGTTAT-----T-CTGAA---AT-CACGA-T-ATA-CACCGC-------TGC-GCAT---T-CAC-GCC-AT-ATTATTT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAAC-AGG-AACT-AAC-A-AGGT--AA-GAG----------AACATT--ACT-T---TAATT-TA---CCAAA-TT--A-A--A-CGA-T-TAATTAT-AAAAGTTGGAA-Gtccatagacgtaagcttacgtctatgtttaactacattgtaaatctgaaatggaaaaattaatatgctca
gi|9 : cccAAAAACAACCCCCA-TTTT-ATATAC-TCGACAGCGAGGTGCTTGAATTTAAATGTCCT-G-T--AGGAAGA--AATATGAG----TAT-ACC-T-----GTA---------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTGA-AAG-TCTTTACAAAGC-GGT--------AT-A
Alignments
lowQualScore : 222 22 11 11111 111111 111111111 1111111111 22222 1111111 11111 1111 111 1 111 11 1111 4444444444 1111
lowQualScore : 222 8 6 1 6 88 7 5 11 9999 9999 4 4 11111 222222 4 4 1 777 4 8888 99 55 4 2 777777777 0 1 5 5 2 4 9999999999 8 4 1 88 4 77777 4 4 4 8888888 4 55555 4 0 4 4 5 66 5 0000 5 5 333 66 5 888 5 555 5 0 000 66 00 5 66 5 5 88 66 5 888 55 888 77 77 5 2222 5 77 77 5 6 5 5 0 5 6 5 5 5 5 0 8 66 4 4 4 0 6 6 7777777777 4444
lowQualScore : ... . . . . .. . . .. .... .... . . ..... ...... . . . ... . .... .. .. . . ......... . . . . . . .......... . . . .. . ..... . . . ....... . ..... . . . . . .. . .... . . ... .. . ... . ... . . ... .. .. . .. . . .. .. . ... .. ... .. .. . .... . .. .. . . . . . . . . . . . . . .. . . . . . . .......... ....
lowQualScore : 222 0 7 0 7 88 5 0 99 2222 4444 4 4 11111 888888 4 4 0 222 0 5555 55 88 0 7 888888888 8 2 0 0 1 4 1111111111 9 4 7 33 4 88888 4 4 4 9999999 4 88888 4 1 4 4 9 99 0 1111 0 0 888 99 0 888 0 888 0 0 444 00 22 0 11 0 0 99 99 0 888 11 888 44 99 7 4444 7 44 99 7 6 0 7 1 0 6 0 0 0 0 8 9 77 4 4 4 9 7 7 0000000000 2222
consensus : AAAAAACGACCCCCA-TTTT-ATANAC-CC-ACAGCGAGNTGCTTGAATTTAAATGTCCT-GT--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAGAGC-GTT--------AT-ATC-TGTTATATC-TT-CTGAA---TTGCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-GCC-AT-ATTNTCT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAAC-GGGAAACN-AAC-A-AGGT--AA-GAGAAC-ATT-AAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--A-CGA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-TCC-TTC-ACTCTTTCAT-GATA-TTC-A-T-TGTTTAGCTACATT-GT-ACA-A---T---ATGTGCAT----ACCCTTACCGGG
Reference ( family-5441 ) : AAAAAACGACCCCCA-TTTT-ATANAC-CC-ACAGCGAGNTGCTTGAATTTAAATGTCCT-GT--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAGAGC-GTT--------AT-ATC-TGTTATATC-TT-CTGAA---TTGCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-GCC-AT-ATTNTCT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAAC-GGGAAACN-AAC-A-AGGT--AA-GAGAAC-ATT-AAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--A-CGA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-TCC-TTC-ACTCTTTCAT-GATA-TTC-A-T-TGTTTAGCTACATT-GT-ACA-A---T---ATGTGCAT----ACCCTTACCGGG
gi|1 : CCCCA-TTTTTATAAAC-CT--CAGTGAGCTGCTTAAATTTAAATGTCCTAGT--AAGAAGA--G--ATCAG----TACAACC-T------TATAA------AG-AAAATC-AAAATC-GACAAC----CAATCAACTATAA-CCTAACCCTGACAAGGCCTACCTGTAGCTATATTTAGAAG-TCTTTACAGAGC-GTT--------ATAATCTTGTTCTATC-GT-TTGAA----TGCACGA-T-ATAGCACCACT------TGCAACAT---T-CACAGCC-AT-ATTGACT--TAAT-C--TTA-AAG-TG---CAAA--CATTG---CC-G-T-ATC-ATT-AGAATAGGGAAACT-AGT-A-AAG------AAGAAC-ATTGAAAACATT--TCT-T---TAATT-TAACGCAAAG-TTAAA-A--A-CGATT-TAAT--T-GAAAGTTGGAA-GA-GAG-AGACA-AATTAAGAAT-TTC-TCC-TTCTACTCTTTCAT-GATA--TC-A-TCTGTTTA-CTACATTGGTAACA-A---T----CGT-CAT----ATCCTTACCGGG
gi|10 : accattTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-CCC-TTC-ACTCTTTCAT-GATA-TTC-T-T-TGTTTAGCTACACT-GT-ACATACACC---ATGTGCATTATAATCCTTACCGGGtatttacaatcaaatgaggaaaaatgatataactgttca
gi|11 : CCT-GT--AAGAAGA--CATATGAA----TAC-ACC-T-----GTATAA------AG-AGAATC-AACATT-GTC-AC----AAACCA--TAG-A-CCAAGTGCCGACAG---------GAATCTTTATTTG-AAT-TCTTTACAGAGCTGT----------T-ATC-TGTTATATC-TC-CTGAA---Ttatttacaaatcttaatcaaatgaggaaaattatattgtt
gi|12 : TTAAATTTAAATGTCCT-GC--AGGAAGA--GAGATGAG----TAC-AGC-T-----GTTTAA------AG-AAAATC-AATATC-TTT-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTg
gi|13 : AAT-TTC-TCC-TTC-ACTCTTTCAC-GATA-TTC-A-T-TGTGTAGCTACAAT-GT-AC----------ATGTGCAT----ACCCTTACCGGG
gi|14 : TACAGAGC-GTT--------AT-ATT-TGTTCTATC-TT-TTGAG---T-GCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-ACC-AT-ATTtatt
gi|15 : -GATA-TGC-A-T-TGTTTAGCTACATT-GT-ACA-A---TATCATGTGCAT----ACCCTTACCGGG
gi|16 : GGT--AG-GAGAAC-ATT-GAAACATT--ACT-T---TAATT-TA---CCtattta
gi|2 : AAAACA--CCCCA-TTTT-ATATAC-TCGACAGCGAGGTGCTTGAATTTTAATGTCCT-GTA-AGGAAGAAGAATATG--------C-ACCGTTTTGAGTATAAGTCTGTAA-GAAATCAAATATA-TAC-AC----AAATCG--TA--A---TAACGCTGAAGG---------ATAG-TATATTGA-AGT-TCTTTACA-AGC-GGT--------ATAAGT-TGTTATAT--TT-CTGAA-----GCACGA-T-ATC-CAACGC-------TG--ACAT---T-CAT-AGC-AT-ATT-TCT--T-ATAT--TTAGAAG-TGTTTC-AA--C-TTG---CC-G-C-ATC-ATT-AAAA---AGAAAAG-AACGA-AGGT--AA-GAGAAC-ATT-AGAA-ATT--AAT-T---TGACC------CTAAA-TT--ATAGTA-TGA-T-AAGT--T-GGAA-TTCGAA-GAGGGA-AG--ATAATTAA-AATGTTC-TC---TC-A--CCTTCAT-GATA-TTCAA-T-TTTTTAGTT-CAT
gi|3 : AAAAAAC--CTCCCA-TTTT-ATAAAC-CT--TAGTGAGATGCT-AAATTTAAATGTCCT-GA--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAACCG--TAT-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAAAGC-GTT--------AT-ATC-TGTTCTATG-TT-CTGAATTCTTACATGA-T-ATG-CACCGC-------TGC-ACAT---T-CAC-GTC-AT-ATCCTGT--T-AT-C--TTA-AAG-TG---CAAA--C-TGG---CT-GCC-ATC-ATT-AGAAT-AGGAAGCT-AAT-A-AGGT--AA-GAAAAT-ATT-AAAACATA--ACT-T---T-ATT-TA---CCAAG-TT--A-A--A-TGA-T-TAAT--T-GAAAGTTGGAA-GAGGGT-AGACATAACTAAGAAT-TTC-TCG-TTC-ACTATTTCAT-GATA-ATC-A-T-TGTTTAGTTACATT-GT-AC----------ATGTGCAT----ACCCTTACCGGGagagtaaagcttacgtacttgtttaactacaattgtacaattaaattgagaaaaattataattgctca
gi|4 : AC-AC----AAATCGT-TAC-A-CCT-ACCCTGACAG---------GTAGCTATATTGA-AAGTTCTTTACAAAGC-GGT--------AT-AGC-TGTTATATCATTACTGAA---ATGCACGATT-ATA-CACCGC-------T-C-A-AT---TGCAT-GCCAAT-ATCTTCT--T-AT-A--TTA-AAG-TG---CAAA--C-TTG---CCTGCCTATC-ATTAAAAAC-AGAAAACG-AACAA-AGGTAAAA-GAGAACGATT-AAAACATCTGACTCC---TA-----A---CCAA--TT--A-G--ATTGA-T---AT--TGGAGAATTCGAACGAGGGA-AAGAATA--TAAAATT-TTCATCCATAC-ACCTCTTCATAGATA-ATC-A-T-TGTTTAG-TACAT
gi|5 : aattagaattagacaa----TAC-ACC-T-----GTATAC------AG-AAAATC-AATATC-TCT-AC----AAATCN--NNN-N-NNNNNNNNNNNNNN---------NNNNNNNNNNNNN-NNN-NNNNNNNNNNNN-NNNNNNNNNNAAT-ATC-TGTTCTATC-TT-CTGAA---T-GTACGA-T-ATA-CACCGC-------TGC-ACAT----------------ATTATCT--T-AT-C--TTA-AAG-TG---CAAA--C-TGG---CC-GCC-ATC-ATT-GAAAT-GGGAAACT-AA-----GGT--AA-GAGAAC-ATT-GAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--AACAA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTT-TCC-TTC-ATGCTTTCAT-GATA-TTC-A-T-TGTTTAGCAACATT-GT-ACATG---T---ATGTGCAT----ACCCTTACCGGGagagattaaaagctttacgtctaatgtttaactacattgttacaatcaaatgcagaaaaattatttgctcaatattc
gi|6 : AAAGAACGAACCCCAATTTT-AGATACTCC-ACAGCGAG-TG-TTGA-TTTA--TGTCCT-GTTAGGGAAGA--AATATGAGGTATTAC-CCC-T-----GGTTAA------AGGAAAATC-AA-ATCCTAC-ACCCCCAAATCG--TAC-ACCCTAA-CCTGACtatttataaatcaaatgaggaaaatgatattgttca
gi|6 : cgcccA-T-AAA-CACCGTCTCTTTGTGC-ACATATAC-CAT-GGC-ATGATTCTGTGTT-CT-CCATTA-AAG-TG---CAAA--C-TTGGCCCT-GCC-ATC-ATTAAAAAC-AGAAAACG-AAC-ATAGGT--Accagagaaaaaaccccaaattgtgtttcgttggattgtatcgttagcctaaattgaaagtccattacaaaacccgtgttgtgagtcagcaacactgctctttaaacccttcccgagcaaatattcaaacgaaataaacaccgtctctttgtgcacatataccatggcatgattctgtgttctccattaaagtgcaaacttggccctgccatcattaaaaacagaaaacgaacataggta
gi|7 : cgcccaaagaacgaaccccaattttagatactccacagcgagtgttgatttatgtcctgttagggaagaaatatgaggtattacccctggttaaaggaaaatcaaatcctacacccccaaatcgtacaccctaacctgacccagagaaaaaaccccaaattgtgtttcgttggattgtatcgttagcctaaattgaaagtccattacaaaacccgtgttgtgagtcagcaacactgctctttaaacccttcccgagcaaatattcaaacgaaC-TGTTATATA-TT-CTGAA---T-GCACGA-TGATA-AACCGC-------TGC-ACAT------AT-GCC-AT-ATTCTCT--T-A-------A-AAGCTGT--CAGATAC-TTG---CC-GC--ATCCATT-AAAAC-AGAAAACCGAAC-A-AGGT--AAAGAGAAC-ATT--AAACA-T--ACT-TTCCTAACCATA---CTTAGTTT--G-A--G-CAA-TGTAGT--T-GAGA-TTCGAA-GAGGGGAAGATA-AATTAA-AAT-TTT-TCC-ATC-ACCACTTCATAAATATTTC-ATT-TGTTTAGTT
gi|8 : gTT-GTAAAC-CT--CAGCGAGCTGCTTAAATTTAAATGT-------------------TATGAG----TAC-ACC-T-----GTATAA------AT-GAAATC-AATATC----------------G--TAC-A-CCTAA-------------------------TATTTA-AAG-CCTTCGTAG----------------------TGTTAT-----T-CTGAA---AT-CACGA-T-ATA-CACCGC-------TGC-GCAT---T-CAC-GCC-AT-ATTATTT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAAC-AGG-AACT-AAC-A-AGGT--AA-GAG----------AACATT--ACT-T---TAATT-TA---CCAAA-TT--A-A--A-CGA-T-TAATTAT-AAAAGTTGGAA-Gtccatagacgtaagcttacgtctatgtttaactacattgtaaatctgaaatggaaaaattaatatgctca
gi|9 : cccAAAAACAACCCCCA-TTTT-ATATAC-TCGACAGCGAGGTGCTTGAATTTAAATGTCCT-GT--AGGAAGA--AATATGAG----TAT-ACC-T-----GTA---------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTGA-AAG-TCTTTACAAAGC-GGT--------AT-A
Alignments
lowQualScore : 222 22 11 11111 111111 111111111 1111111111 22222 1111111 11111 1111 111 1 111 11 1111 4444444444 1111
lowQualScore : 222 8 6 1 6 88 7 5 11 9999 9999 4 4 11111 222222 4 4 1 777 4 8888 99 55 4 2 777777777 0 1 5 5 2 4 9999999999 8 4 1 88 4 77777 4 4 4 8888888 4 55555 4 0 4 4 5 66 5 0000 5 5 333 66 5 888 5 555 5 0 000 66 00 5 66 5 5 88 66 5 888 55 888 77 77 5 2222 5 77 77 5 6 5 5 0 5 6 5 5 5 5 0 8 66 4 4 4 0 6 6 7777777777 4444
lowQualScore : ... . . . . .. . . .. .... .... . . ..... ...... . . . ... . .... .. .. . . ......... . . . . . . .......... . . . .. . ..... . . . ....... . ..... . . . . . .. . .... . . ... .. . ... . ... . . ... .. .. . .. . . .. .. . ... .. ... .. .. . .... . .. .. . . . . . . . . . . . . . .. . . . . . . .......... ....
lowQualScore : 222 0 7 0 7 88 5 0 99 2222 4444 4 4 11111 888888 4 4 0 222 0 5555 55 88 0 7 888888888 8 2 0 0 1 4 1111111111 9 4 7 33 4 88888 4 4 4 9999999 4 88888 4 1 4 4 9 99 0 1111 0 0 888 99 0 888 0 888 0 0 444 00 22 0 11 0 0 99 99 0 888 11 888 44 99 7 4444 7 44 99 7 6 0 7 1 0 6 0 0 0 0 8 9 77 4 4 4 9 7 7 0000000000 2222
consensus : AAAAAACGACCCCCA-TTTT-ATANAC-CC-ACAGCGAGNTGCTTGAATTTAAATGTCCT-GT--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAGAGC-GTT--------AT-ATC-TGTTATATC-TT-CTGAA---TTGCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-GCC-AT-ATTNTCT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAAC-GGGAAACN-AAC-A-AGGT--AA-GAGAAC-ATT-AAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--A-CGA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-TCC-TTC-ACTCTTTCAT-GATA-TTC-A-T-TGTTTAGCTACATT-GT-ACA-A---T---ATGTGCAT----ACCCTTACCGGG
Reference ( family-5441 ) : AAAAAACGACCCCCA-TTTT-ATANAC-CC-ACAGCGAGNTGCTTGAATTTAAATGTCCT-GT--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAGAGC-GTT--------AT-ATC-TGTTATATC-TT-CTGAA---TTGCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-GCC-AT-ATTNTCT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAAC-GGGAAACN-AAC-A-AGGT--AA-GAGAAC-ATT-AAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--A-CGA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-TCC-TTC-ACTCTTTCAT-GATA-TTC-A-T-TGTTTAGCTACATT-GT-ACA-A---T---ATGTGCAT----ACCCTTACCGGG
gi|1 : CCCCA-TTTTTATAAAC-CT--CAGTGAGCTGCTTAAATTTAAATGTCCTAGT--AAGAAGA--G--ATCAG----TACAACC-T------TATAA------AG-AAAATC-AAAATC-GACAAC----CAATCAACTATAA-CCTAACCCTGACAAGGCCTACCTGTAGCTATATTTAGAAG-TCTTTACAGAGC-GTT--------ATAATCTTGTTCTATC-GT-TTGAA----TGCACGA-T-ATAGCACCACT------TGCAACAT---T-CACAGCC-AT-ATTGACT--TAAT-C--TTA-AAG-TG---CAAA--CATTG---CC-G-T-ATC-ATT-AGAATAGGGAAACT-AGT-A-AAG------AAGAAC-ATTGAAAACATT--TCT-T---TAATT-TAACGCAAAG-TTAAA-A--A-CGATT-TAAT--T-GAAAGTTGGAA-GA-GAG-AGACA-AATTAAGAAT-TTC-TCC-TTCTACTCTTTCAT-GATA--TC-A-TCTGTTTA-CTACATTGGTAACA-A---T----CGT-CAT----ATCCTTACCGGG
gi|10 : accattTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-CCC-TTC-ACTCTTTCAT-GATA-TTC-T-T-TGTTTAGCTACACT-GT-ACATACACC---ATGTGCATTATAATCCTTACCGGGtatttacaatcaaatgaggaaaaatgatataactgttca
gi|11 : CCT-GT--AAGAAGA--CATATGAA----TAC-ACC-T-----GTATAA------AG-AGAATC-AACATT-GTC-AC----AAACCA--TAG-A-CCAAGTGCCGACAG---------GAATCTTTATTTG-AAT-TCTTTACAGAGCTGT----------T-ATC-TGTTATATC-TC-CTGAA---Ttatttacaaatcttaatcaaatgaggaaaattatattgtt
gi|12 : TTAAATTTAAATGTCCT-GC--AGGAAGA--GAGATGAG----TAC-AGC-T-----GTTTAA------AG-AAAATC-AATATC-TTT-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTg
gi|13 : AAT-TTC-TCC-TTC-ACTCTTTCAC-GATA-TTC-A-T-TGTGTAGCTACAAT-GT-AC----------ATGTGCAT----ACCCTTACCGGG
gi|14 : TACAGAGC-GTT--------AT-ATT-TGTTCTATC-TT-TTGAG---T-GCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-ACC-AT-ATTtatt
gi|15 : -GATA-TGC-A-T-TGTTTAGCTACATT-GT-ACA-A---TATCATGTGCAT----ACCCTTACCGGG
gi|16 : GGT--AG-GAGAAC-ATT-GAAACATT--ACT-T---TAATT-TA---CCtattta
gi|2 : AAAACA--CCCCA-TTTT-ATATAC-TCGACAGCGAGGTGCTTGAATTTTAATGTCCT-GTA-AGGAAGAAGAATATG--------C-ACCGTTTTGAGTATAAGTCTGTAA-GAAATCAAATATA-TAC-AC----AAATCG--TA--A---TAACGCTGAAGG---------ATAG-TATATTGA-AGT-TCTTTACA-AGC-GGT--------ATAAGT-TGTTATAT--TT-CTGAA-----GCACGA-T-ATC-CAACGC-------TG--ACAT---T-CAT-AGC-AT-ATT-TCT--T-ATAT--TTAGAAG-TGTTTC-AA--C-TTG---CC-G-C-ATC-ATT-AAAA---AGAAAAG-AACGA-AGGT--AA-GAGAAC-ATT-AGAA-ATT--AAT-T---TGACC------CTAAA-TT--ATAGTA-TGA-T-AAGT--T-GGAA-TTCGAA-GAGGGA-AG--ATAATTAA-AATGTTC-TC---TC-A--CCTTCAT-GATA-TTCAA-T-TTTTTAGTT-CAT
gi|3 : AAAAAAC--CTCCCA-TTTT-ATAAAC-CT--TAGTGAGATGCT-AAATTTAAATGTCCT-GA--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAACCG--TAT-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAAAGC-GTT--------AT-ATC-TGTTCTATG-TT-CTGAATTCTTACATGA-T-ATG-CACCGC-------TGC-ACAT---T-CAC-GTC-AT-ATCCTGT--T-AT-C--TTA-AAG-TG---CAAA--C-TGG---CT-GCC-ATC-ATT-AGAAT-AGGAAGCT-AAT-A-AGGT--AA-GAAAAT-ATT-AAAACATA--ACT-T---T-ATT-TA---CCAAG-TT--A-A--A-TGA-T-TAAT--T-GAAAGTTGGAA-GAGGGT-AGACATAACTAAGAAT-TTC-TCG-TTC-ACTATTTCAT-GATA-ATC-A-T-TGTTTAGTTACATT-GT-AC----------ATGTGCAT----ACCCTTACCGGGagagtaaagcttacgtacttgtttaactacaattgtacaattaaattgagaaaaattataattgctca
gi|4 : AC-AC----AAATCGT-TAC-A-CCT-ACCCTGACAG---------GTAGCTATATTGA-AAGTTCTTTACAAAGC-GGT--------AT-AGC-TGTTATATCATTACTGAA---ATGCACGATT-ATA-CACCGC-------T-C-A-AT---TGCAT-GCCAAT-ATCTTCT--T-AT-A--TTA-AAG-TG---CAAA--C-TTG---CCTGCCTATC-ATTAAAAAC-AGAAAACG-AACAA-AGGTAAAA-GAGAACGATT-AAAACATCTGACTCC---TA-----A---CCAA--TT--A-G--ATTGA-T---AT--TGGAGAATTCGAACGAGGGA-AAGAATA--TAAAATT-TTCATCCATAC-ACCTCTTCATAGATA-ATC-A-T-TGTTTAG-TACAT
gi|5 : aattagaattagacaa----TAC-ACC-T-----GTATAC------AG-AAAATC-AATATC-TCT-AC----AAATCN--NNN-N-NNNNNNNNNNNNNN---------NNNNNNNNNNNNN-NNN-NNNNNNNNNNNN-NNNNNNNNNNAAT-ATC-TGTTCTATC-TT-CTGAA---T-GTACGA-T-ATA-CACCGC-------TGC-ACAT----------------ATTATCT--T-AT-C--TTA-AAG-TG---CAAA--C-TGG---CC-GCC-ATC-ATT-GAAAT-GGGAAACT-AA-----GGT--AA-GAGAAC-ATT-GAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--AACAA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTT-TCC-TTC-ATGCTTTCAT-GATA-TTC-A-T-TGTTTAGCAACATT-GT-ACATG---T---ATGTGCAT----ACCCTTACCGGGagagattaaaagctttacgtctaatgtttaactacattgttacaatcaaatgcagaaaaattatttgctcaatattc
gi|6 : AAAGAACGAACCCCAATTTT-AGATACTCC-ACAGCGAG-TG-TTGA-TTTA--TGTCCT-GTTAGGGAAGA--AATATGAGGTATTAC-CCC-T-----GGTTAA------AGGAAAATC-AA-ATCCTAC-ACCCCCAAATCG--TAC-ACCCTAA-CCTGACtatttataaatcaaatgaggaaaatgatattgttca
gi|6 : cgcccA-T-AAA-CACCGTCTCTTTGTGC-ACATATAC-CAT-GGC-ATGATTCTGTGTT-CT-CCATTA-AAG-TG---CAAA--C-TTGGCCCT-GCC-ATC-ATTAAAAAC-AGAAAACG-AAC-ATAGGT--Accagagaaaaaaccccaaattgtgtttcgttggattgtatcgttagcctaaattgaaagtccattacaaaacccgtgttgtgagtcagcaacactgctctttaaacccttcccgagcaaatattcaaacgaaataaacaccgtctctttgtgcacatataccatggcatgattctgtgttctccattaaagtgcaaacttggccctgccatcattaaaaacagaaaacgaacataggta
gi|7 : cgcccaaagaacgaaccccaattttagatactccacagcgagtgttgatttatgtcctgttagggaagaaatatgaggtattacccctggttaaaggaaaatcaaatcctacacccccaaatcgtacaccctaacctgacccagagaaaaaaccccaaattgtgtttcgttggattgtatcgttagcctaaattgaaagtccattacaaaacccgtgttgtgagtcagcaacactgctctttaaacccttcccgagcaaatattcaaacgaaC-TGTTATATA-TT-CTGAA---T-GCACGA-TGATA-AACCGC-------TGC-ACAT------AT-GCC-AT-ATTCTCT--T-A-------A-AAGCTGT--CAGATAC-TTG---CC-GC--ATCCATT-AAAAC-AGAAAACCGAAC-A-AGGT--AAAGAGAAC-ATT--AAACA-T--ACT-TTCCTAACCATA---CTTAGTTT--G-A--G-CAA-TGTAGT--T-GAGA-TTCGAA-GAGGGGAAGATA-AATTAA-AAT-TTT-TCC-ATC-ACCACTTCATAAATATTTC-ATT-TGTTTAGTT
gi|8 : gTT-GTAAAC-CT--CAGCGAGCTGCTTAAATTTAAATGT-------------------TATGAG----TAC-ACC-T-----GTATAA------AT-GAAATC-AATATC----------------G--TAC-A-CCTAA-------------------------TATTTA-AAG-CCTTCGTAG----------------------TGTTAT-----T-CTGAA---AT-CACGA-T-ATA-CACCGC-------TGC-GCAT---T-CAC-GCC-AT-ATTATTT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAAC-AGG-AACT-AAC-A-AGGT--AA-GAG----------AACATT--ACT-T---TAATT-TA---CCAAA-TT--A-A--A-CGA-T-TAATTAT-AAAAGTTGGAA-Gtccatagacgtaagcttacgtctatgtttaactacattgtaaatctgaaatggaaaaattaatatgctca
gi|9 : cccAAAAACAACCCCCA-TTTT-ATATAC-TCGACAGCGAGGTGCTTGAATTTAAATGTCCT-GT--AGGAAGA--AATATGAG----TAT-ACC-T-----GTA---------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTGA-AAG-TCTTTACAAAGC-GGT--------AT-A
blockSeqs : GAA A . T T GA G . TA AGAA GTAT . G TTTGA GTCTGT G A C CTA . CCCC T G C T . T . T G T NNNNNNNNNA A . A CA A TTCTT T G . CTCTTTG . ATAC . A G C GT . CCA G C TTT TA . GCC T CCT C A TA CG CG T AA A G G TG C TCC AT . GT . T GTA . GT TA G G C A T G G A A . A TT A T . . . ATACACC TATA
blockSeqs : AAC . . A . GA A . A CA . . . . . . . T GT . . . C . C . G . . G . TT . . C C . AT . . . . . TG . . . T . . AT . . T . . . . CC . A CA G CA . . . . A . . . T . A . . AT . A . . A . . T G . . . . A T . . . . . AATATC .
blockSeqs : C . . T . A C . . GA . . . . . . . T TT . . . T . C . T . . A . GT . . A C . AT . . . . . T . . . A . . C . . . . . . . CC . . TG T T . . . . A . . . T . G . . AA . T . . G . . T A . . . . . T . . . . . ATGT .
blockSeqs : . . A . . G . . GA . . . . . . . T TA . . . C . C . G . . A . TT . . C G . T . . . . . T . . . C . . A . . . . . . . CC . . CA G C . . . . A . . . T . G . . A . T . . G . . T G . . . . . T . . . . . . .
blockSeqs : . T . . . . . AA . . . . . . . T TA . . . N . C . N . . N . GT . . A C . T . . . . . T . . . C . . C . . . . . . . CC . . CA T C . . . . G . . . T . A . . G . T . . . . . T . . . . . . T . . . . . . .
blockSeqs : . . AA . . . . . . . T TC . . . C . N . T . . G . GT . . C A . T . . . . . T . . . A . . C . . . . . . . C . . CA G C . . . . . . . . . . . . . A . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . T TA . . . C . C . G . . A . T . . A . . . . . . . . . . . . . . . . . . . . . . . C . . . T . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . C . . . . . . . . A . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . .
blockSeqCons : GA** ** C* ********* ******* CC* CA* A* *** ** T* ACGC******
originalCons : AAAAAACGACCCCCA-TTTT-ATANAC-CC-ACAGCGAGNTGCTTGAATTTAAATGTCCT-GT--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAGAGC-GTT--------AT-ATC-TGTTATATC-TT-CTGAA---TTGCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-GCC-AT-ATTNTCT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAAC-GGGAAACN-AAC-A-AGGT--AA-GAGAAC-ATT-AAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--A-CGA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-TCC-TTC-ACTCTTTCAT-GATA-TTC-A-T-TGTTTAGCTACATT-GT-ACA-A---T---ATGTGCAT----ACCCTTACCGGG
finalCons : AAAAAACGACCCCCA-TTTT-ATANAC-CC-ACAGCGAGNTGCTTGAATTTAAATGTCCT-GT--AGGAAGAGA--TATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAGAGC-GTT--------AT-ATC-TGTTATATC-TT-CTGAA---TTGCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-GCC-AT-ATTNTCT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAACA-GGAAACN-AAC-A-AGGT--AA-GAGAAC-ATTA-AAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--A-CGA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-TCC-TTC-ACTCTTTCAT-GATAT-TC-A-T-TGTTTAGCTACATT-GT-ACACGC------ATGTGCAT----ACCCTTACCGGG
Alignments
lowQualScore : 222 22 11 11111 111111 111111111 1111111111 22222 1111111 11111 1111 111 1 11 11 1111 5555555555 1111
lowQualScore : 222 8 6 1 6 88 7 5 11 9999 9999 4 4 11111 222222 4 4 1 777 4 8888 99 55 4 2 777777777 0 1 5 5 2 4 9999999999 8 4 1 88 4 77777 4 4 4 8888888 4 55555 4 0 4 4 5 66 5 0000 5 5 333 66 5 888 5 555 5 0 2 5 5 1 00 5 00 5 88 66 5 888 55 888 77 77 5 2222 5 77 77 5 6 5 5 0 5 6 5 5 5 5 0 8 66 4 4 4 0 6 1111111111 6 4444
lowQualScore : ... . . . . .. . . .. .... .... . . ..... ...... . . . ... . .... .. .. . . ......... . . . . . . .......... . . . .. . ..... . . . ....... . ..... . . . . . .. . .... . . ... .. . ... . ... . . . . . . .. . .. . .. .. . ... .. ... .. .. . .... . .. .. . . . . . . . . . . . . . .. . . . . . .......... . ....
lowQualScore : 222 0 7 0 7 88 5 0 99 2222 4444 4 4 11111 888888 4 4 0 222 0 5555 55 88 0 7 888888888 8 2 0 0 1 4 1111111111 9 4 7 33 4 88888 4 4 4 9999999 4 88888 4 1 4 4 9 99 0 1111 0 0 888 99 0 888 0 888 0 0 2 0 0 0 22 0 66 0 99 99 0 888 11 888 44 99 7 4444 7 44 99 7 6 0 7 1 0 6 0 0 0 0 8 9 77 4 4 4 9 7 5555555555 7 2222
consensus : AAAAAACGACCCCCA-TTTT-ATANAC-CC-ACAGCGAGNTGCTTGAATTTAAATGTCCT-GT--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAGAGC-GTT--------AT-ATC-TGTTATATC-TT-CTGAA---TTGCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-GCC-AT-ATTNTCT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAACA-GGAAA-CNAAC-A-AGGT--AAGAGAAC-ATT-AAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--A-CGA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-TCC-TTC-ACTCTTTCAT-GATA-TTC-A-T-TGTTTAGCTACATT-GTACA-------CAT-GTGCAT----ACCCTTACCGGG
Reference ( family-5441 ) : AAAAAACGACCCCCA-TTTT-ATANAC-CC-ACAGCGAGNTGCTTGAATTTAAATGTCCT-GT--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAGAGC-GTT--------AT-ATC-TGTTATATC-TT-CTGAA---TTGCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-GCC-AT-ATTNTCT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAACA-GGAAA-CNAAC-A-AGGT--AAGAGAAC-ATT-AAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--A-CGA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-TCC-TTC-ACTCTTTCAT-GATA-TTC-A-T-TGTTTAGCTACATT-GTACA--CG---CAT-GTGCAT----ACCCTTACCGGG
gi|1 : CCCCA-TTTTTATAAAC-CT--CAGTGAGCTGCTTAAATTTAAATGTCCTAGT--AAGAAGA--G--ATCAG----TACAACC-T------TATAA------AG-AAAATC-AAAATC-GACAAC----CAATCAACTATAA-CCTAACCCTGACAAGGCCTACCTGTAGCTATATTTAGAAG-TCTTTACAGAGC-GTT--------ATAATCTTGTTCTATC-GT-TTGAA----TGCACGA-T-ATAGCACCACT------TGCAACAT---T-CACAGCC-AT-ATTGACT--TAAT-C--TTA-AAG-TG---CAAA--CATTG---CC-G-T-ATC-ATT-AGAATAGGGAAA-CTAGT-A-AAG-----AAGAAC-ATTGAAAACATT--TCT-T---TAATT-TAACGCAAAG-TTAAA-A--A-CGATT-TAAT--T-GAAAGTTGGAA-GA-GAG-AGACA-AATTAAGAAT-TTC-TCC-TTCTACTCTTTCAT-GATA--TC-A-TCTGTTTA-CTACATTGGTA-A--CA----ATCGT-CAT----ATCCTTACCGGG
gi|10 : accattTGGAA-GAGGGG-AGACATAATTAAGAAT-TTC-CCC-TTC-ACTCTTTCAT-GATA-TTC-T-T-TGTTTAGCTACACT-GTACA--TACACCAT-GTGCATTATAATCCTTACCGGGtatttacaatcaaatgaggaaaaatgatataactgttca
gi|11 : CCT-GT--AAGAAGA--CATATGAA----TAC-ACC-T-----GTATAA------AG-AGAATC-AACATT-GTC-AC----AAACCA--TAG-A-CCAAGTGCCGACAG---------GAATCTTTATTTG-AAT-TCTTTACAGAGCTGT----------T-ATC-TGTTATATC-TC-CTGAA---Ttatttacaaatcttaatcaaatgaggaaaattatattgtt
gi|12 : TTAAATTTAAATGTCCT-GC--AGGAAGA--GAGATGAG----TAC-AGC-T-----GTTTAA------AG-AAAATC-AATATC-TTT-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTg
gi|13 : AAT-TTC-TCC-TTC-ACTCTTTCAC-GATA-TTC-A-T-TGTGTAGCTACAAT-GTA---------CAT-GTGCAT----ACCCTTACCGGG
gi|14 : TACAGAGC-GTT--------AT-ATT-TGTTCTATC-TT-TTGAG---T-GCACGA-T-ATA-CACCGC-------TGC-ACAT---T-CAC-ACC-AT-ATTtatt
gi|15 : -GATA-TGC-A-T-TGTTTAGCTACATT-GTACAATAT---CAT-GTGCAT----ACCCTTACCGGG
gi|16 : GGT--AGGAGAAC-ATT-GAAACATT--ACT-T---TAATT-TA---CCtattta
gi|2 : AAAACA--CCCCA-TTTT-ATATAC-TCGACAGCGAGGTGCTTGAATTTTAATGTCCT-GTA-AGGAAGAAGAATATG--------C-ACCGTTTTGAGTATAAGTCTGTAA-GAAATCAAATATA-TAC-AC----AAATCG--TA--A---TAACGCTGAAGG---------ATAG-TATATTGA-AGT-TCTTTACA-AGC-GGT--------ATAAGT-TGTTATAT--TT-CTGAA-----GCACGA-T-ATC-CAACGC-------TG--ACAT---T-CAT-AGC-AT-ATT-TCT--T-ATAT--TTAGAAG-TGTTTC-AA--C-TTG---CC-G-C-ATC-ATT-AAAA-A-GAAAA--GAACGA-AGGT--AAGAGAAC-ATT-AGAA-ATT--AAT-T---TGACC------CTAAA-TT--ATAGTA-TGA-T-AAGT--T-GGAA-TTCGAA-GAGGGA-AG--ATAATTAA-AATGTTC-TC---TC-A--CCTTCAT-GATA-TTCAA-T-TTTTTAGTT-CAT
gi|3 : AAAAAAC--CTCCCA-TTTT-ATAAAC-CT--TAGTGAGATGCT-AAATTTAAATGTCCT-GA--AGGAAGA--GATATGAG----TAC-ACC-T-----GTATAA------AG-AAAATC-AATATC-TAC-AC----AAACCG--TAT-A-CCTAACCCTGACAG---------GTAGCTATATTTA-AAG-TCTTTACAAAGC-GTT--------AT-ATC-TGTTCTATG-TT-CTGAATTCTTACATGA-T-ATG-CACCGC-------TGC-ACAT---T-CAC-GTC-AT-ATCCTGT--T-AT-C--TTA-AAG-TG---CAAA--C-TGG---CT-GCC-ATC-ATT-AGAATA-GGAAG-CTAAT-A-AGGT--AAGAAAAT-ATT-AAAACATA--ACT-T---T-ATT-TA---CCAAG-TT--A-A--A-TGA-T-TAAT--T-GAAAGTTGGAA-GAGGGT-AGACATAACTAAGAAT-TTC-TCG-TTC-ACTATTTCAT-GATA-ATC-A-T-TGTTTAGTTACATT-GTA---------CAT-GTGCAT----ACCCTTACCGGGagagtaaagcttacgtacttgtttaactacaattgtacaattaaattgagaaaaattataattgctca
gi|4 : AC-AC----AAATCGT-TAC-A-CCT-ACCCTGACAG---------GTAGCTATATTGA-AAGTTCTTTACAAAGC-GGT--------AT-AGC-TGTTATATCATTACTGAA---ATGCACGATT-ATA-CACCGC-------T-C-A-AT---TGCAT-GCCAAT-ATCTTCT--T-AT-A--TTA-AAG-TG---CAAA--C-TTG---CCTGCCTATC-ATTAAAAACA-GAAAA-CGAACAA-AGGTAAAAGAGAACGATT-AAAACATCTGACTCC---TA-----A---CCAA--TT--A-G--ATTGA-T---AT--TGGAGAATTCGAACGAGGGA-AAGAATA--TAAAATT-TTCATCCATAC-ACCTCTTCATAGATA-ATC-A-T-TGTTTAG-TACAT
gi|5 : aattagaattagacaa----TAC-ACC-T-----GTATAC------AG-AAAATC-AATATC-TCT-AC----AAATCN--NNN-N-NNNNNNNNNNNNNN---------NNNNNNNNNNNNN-NNN-NNNNNNNNNNNN-NNNNNNNNNNAAT-ATC-TGTTCTATC-TT-CTGAA---T-GTACGA-T-ATA-CACCGC-------TGC-ACAT----------------ATTATCT--T-AT-C--TTA-AAG-TG---CAAA--C-TGG---CC-GCC-ATC-ATT-GAAATG-GGAAA-CTAA-----GGT--AAGAGAAC-ATT-GAAACATT--ACT-T---TAATT-TA---CCAAG-TT--A-A--AACAA-T-TAAT--T-GAAAGTTGGAA-GAGGGG-AGACATAATTAAGAAT-TTT-TCC-TTC-ATGCTTTCAT-GATA-TTC-A-T-TGTTTAGCAACATT-GTACA--TG---TAT-GTGCAT----ACCCTTACCGGGagagattaaaagctttacgtctaatgtttaactacattgttacaatcaaatgcagaaaaattatttgctcaatattc
gi|6 : AAAGAACGAACCCCAATTTT-AGATACTCC-ACAGCGAG-TG-TTGA-TTTA--TGTCCT-GTTAGGGAAGA--AATATGAGGTATTAC-CCC-T-----GGTTAA------AGGAAAATC-AA-ATCCTAC-ACCCCCAAATCG--TAC-ACCCTAA-CCTGACtatttataaatcaaatgaggaaaatgatattgttca
gi|6 : cgcccA-T-AAA-CACCGTCTCTTTGTGC-ACATATAC-CAT-GGC-ATGATTCTGTGTT-CT-CCATTA-AAG-TG---CAAA--C-TTGGCCCT-GCC-ATC-ATTAAAAACA-GAAAA-CGAAC-ATAGGT--Accagagaaaaaaccccaaattgtgtttcgttggattgtatcgttagcctaaattgaaagtccattacaaaacccgtgttgtgagtcagcaacactgctctttaaacccttcccgagcaaatattcaaacgaaataaacaccgtctctttgtgcacatataccatggcatgattctgtgttctccattaaagtgcaaacttggccctgccatcattaaaaacagaaaacgaacataggta
gi|7 : cgcccaaagaacgaaccccaattttagatactccacagcgagtgttgatttatgtcctgttagggaagaaatatgaggtattacccctggttaaaggaaaatcaaatcctacacccccaaatcgtacaccctaacctgacccagagaaaaaaccccaaattgtgtttcgttggattgtatcgttagcctaaattgaaagtccattacaaaacccgtgttgtgagtcagcaacactgctctttaaacccttcccgagcaaatattcaaacgaaC-TGTTATATA-TT-CTGAA---T-GCACGA-TGATA-AACCGC-------TGC-ACAT------AT-GCC-AT-ATTCTCT--T-A-------A-AAGCTGT--CAGATAC-TTG---CC-GC--ATCCATT-AAAACA-GAAAACCGAAC-A-AGGTA-AAGAGAAC-ATT--AAACA-T--ACT-TTCCTAACCATA---CTTAGTTT--G-A--G-CAA-TGTAGT--T-GAGA-TTCGAA-GAGGGGAAGATA-AATTAA-AAT-TTT-TCC-ATC-ACCACTTCATAAATATTTC-ATT-TGTTTAGTT
gi|8 : gTT-GTAAAC-CT--CAGCGAGCTGCTTAAATTTAAATGT-------------------TATGAG----TAC-ACC-T-----GTATAA------AT-GAAATC-AATATC----------------G--TAC-A-CCTAA-------------------------TATTTA-AAG-CCTTCGTAG----------------------TGTTAT-----T-CTGAA---AT-CACGA-T-ATA-CACCGC-------TGC-GCAT---T-CAC-GCC-AT-ATTATTT--T-AT-C--TTA-AAG-TG---CAAA--C-TTG---CC-GCC-ATC-ATT-AAAACA-GG-AA-CTAAC-A-AGGT--AAGAG----------AACATT--ACT-T---TAATT-TA---CCAAA-TT--A-A--A-CGA-T-TAATTAT-AAAAGTTGGAA-Gtccatagacgtaagcttacgtctatgtttaactacattgtaaatctgaaatggaaaaattaatatgctca
gi|9 : cccAAAAACAACCCCCA-TTTT-ATATAC-TCGACAGCGAGGTGCTTGAATTTAAATGTCCT-GT--AGGAAGA--AATATGAG----TAT-ACC-T-----GTA---------AG-AAAATC-AATATC-TAC-AC----AAATCG--TAC-A-CCTAACCCTGACAG---------GTAGCTATATTGA-AAG-TCTTTACAAAGC-GGT--------AT-A