lowQualScore : 22222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111 11111111111
lowQualScore : 2 1 2 333333 1 222222222 11 1111 11 33333 111 11 11 2222 55555 11 111 1 5555555555555 22 1111 33 1111 2 11 1111 1111 333 11111111 22222 11 111 666666666666666666666666666666666 111 444444444 1 2 1 22 11 1 22 11 11 1 1 4444444444444444444 2 2 111 333 444444444 55555555555 1 00000000000000000000000000000000000000000000000000000 55 4 4 666666 1 4 4 4444444444 22 55 4 666666666 44 3333 2 1 1 2 22 333 2 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 2 22 2 22 00000000000000000000000000000000000000000000000 33 2 555555555 1 22 22 11111111111
lowQualScore : 0 3 6 444444 3 999999999 8 11 4444 8 8 2 44 8 99999 8 444 11 11 4444 99999 88 777 0 2 4444444444444 33 7777 66 3 5 0 2222 1 5 0 6 5 5 77 77 77 77 00 2222 77 6 1 5 2222 77 9999 5 5 111 77 66 88888888 5 66 5 77 5 5 5 6 99999 1 11 444 999999999999999999999999999999999 111 88 3 666666666 1 77 0 2 0 3 3 33 66 3 7 8 55 11 3 66 33 0 0 6666666666666666666 6 7 3 777 000 4 222222222 00000000000 5 11111111111111111111111111111111111111111111111111111 55 0 0 777777 5 0 0 9999999999 77 00 2 0 555555555 33 4 7777 0 7 6 7 55 3 555 0 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 77 3 0 77 0 77 33333333333333333333333333333333333333333333333 55 0 2 777777777 3 5 77 44 88888888888
lowQualScore : . . . ...... . ......... . .. .... . . . .. . ..... . ... .. .. .... ..... .. ... . . ............. .. .... .. . . . .... . . . . . . .. .. .. .. .. .... .. . . . .... .. .... . . ... .. .. ........ . .. . .. . . . . ..... . .. ... ................................. ... .. . ......... . .. . . . . . .. .. . . . .. .. . .. .. . . ................... . . . ... ... . ......... ........... . ..................................................... .. . . ...... . . . .......... .. .. . . ......... .. . .... . . . . .. . ... . . ............................................................................................................ .. . . .. . .. ............................................... .. . . ......... . . .. .. ...........
lowQualScore : 0 3 7 333333 3 000000000 0 00 4444 0 0 2 88 0 22222 0 222 00 00 3333 00000 33 777 0 2 2222222222222 00 9999 44 9 7 1 1111 4 7 1 1 7 7 99 99 99 99 77 1111 99 0 4 7 1111 99 4444 7 7 444 99 99 88888888 7 33 7 99 7 7 7 7 00000 0 00 000 000000000000000000000000000000000 888 88 2 222222222 2 22 5 0 0 2 2 88 55 3 3 0 00 66 0 00 88 0 0 3333333333333333333 7 3 7 000 000 0 777777777 55555555555 5 00000000000000000000000000000000000000000000000000000 00 0 0 000000 0 0 0 0000000000 55 55 5 0 555555555 00 0 5555 0 0 0 5 55 0 000 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 0 0 55 0 55 55555555555555555555555555555555555555555555555 55 0 5 000000000 0 5 55 00 00000000000
consensus : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA----TNTN-ACACCG-CC--ATTN-C-GG-GA-ATGAACTTGT-AAAAA-N--TTCGTAT-AAA-T-CGT--AAA--TTCATAATATGT-AC-ATGTAAGTA-ATGATGAATAT--GAAAC-A-ATGAA-GACTTTTA-----A----T--CTATGTCG-CAGGG---GTCCAA-CAAAT-GTAA----AACACAA-AAACGTT-GG-T-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA----C--AAC-ACATA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACGGACGTTTAG--ACA---TT-TA-CA---TTTCAAC-------A-TA-CGTTGGCAGTACAAA--TAA-CACAACATTT-AGAAT-ACGCTACCANTGAAAATAA-TTA-TCAATATAAT-AAATA-CAAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAANGAAG-TTTATAT--TATA-GTTCA-AT-A-GT-TACCTC--TG-A-GCGACCGTGAAGGTAT-ACAGAAAATCCTCATGCGTGTNTTAAAAA--GCGGCG-GAGTTGCTTTTATGTTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCTCAACAAACAGTCTCCATCATGACTGGA--CACATACCGTACTATCGTTACTGATCGCTTGTTACACCAC-CACACGTCGCACACGTAGTCGATTGGCTATGCGCGCGCGCACATA-CAGTCTAAACAGCA-AACTGTGGNAT-CTATTTATTATTAAATCGAATTTCAT-TCAGAACTNTTATTCGCCCTGTTATCTAATAAGGAATTATTCCTACNCAAANCAATATATAAAAACTGATTTTTTCGAT-----CA-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAACCTTCGGTTCTTCTTTGGCCAAATGTTCACTCAGATGGGCANGAAGTATACGCGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTTTAGACTTTGTGTTGATGTCTAATCGAGAGGTCGAGTNTTTNCCGAAT-NTTNTTTCTGATTTTTCTTACACCTATTTGGCNGGGAGAT-CGTCTATTTCTGCTGTCACC
Reference ( gi|2 ) : ATA-TCTGGAAATT-CATCA-TGGATTGT----TGGTA-TA----TTTA-ACACTG-CC--ATTA-C-GG-GA-ATGAACTTGT-AAAA--T--TTCGTAT-AAA-T-CGT--AAA--TTCATAATATGT-AC-ATGTAA----ATGATGAATAT--GAAAC-A-ATGAA-GATTTTTA-----A----T--CTATGTCC-CAGGG---GTCCA--CAAAT-GTAA----AACACAA-AAACGTTTGG-T-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGAAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA----C--TAC-ACATA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAAGAATTTAG--ACA---TTATA-C----TTTCAAC-------A-TA-CGT--GCAGTACAAA--TAA-CACAACATTTTAGAAT-ACGCTACCAATGAAAAAAATTTA-TCAATATAA--AAATA-CAAATAT-AAATCTTACCAG-GACTCCAGTA-TATAATATAAATGAAA-TTTATAT--TATA-GTTTA-AT-A-GT-TACTTC--TG-A-GCGACC-TGAAGGTATAACAGAAAGTCCTCATG-G-GTATTAAAAA-TGCGGCG-GAGTTGCTTTTATAT-G-AGTGA---GGTGAGTAC---ATGCAT--A-TTAATT--CA-GTT-TAAAGGC--AACAAACA----TCA-CATGACTGGAACCACAT-CCGTACTATC-TTACT-ATC--TTGTTACAACACACACAC-TCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATAGCAG--TAAACAGCGCAACTGTGACATGCTATTTATTATAACATC---TTTCATGTCAGAACTTTTAT--G-CCTGTTATC-AAAAATGAATTATGCCTACCTAAAACAATA---AAAAA-TGA-TTTT----------CATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAA-TTTTGCACACGG--TCCTCCC--ATTCTGTA-ATT--AAGC-TTTCCAGACTTT-T-----TATT---TCAAGA-GTCGA-TCTTTGC--AATCTTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGATACG--TAT---TGCTGTCACC
gi|4 : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTAATA----TGTT-ATACCATCC--ATTAAC-GGTGA-ATGAACTTGT-AAAA--AAATTCGTAT-AAAAT-CGT--AAA--TTCATAATATGT-A---TGTAA-----TGATGAATAT--GAAAC-A-ATGAA-GACTTGTATCTACA----T--GTATATTG-CAGGG----TCCAA-CAAAT-GTAA----AACGCAA-AAACGTT-GG-T-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAAAC-ACA--AATT--CTCA----C--AAC-ACGTG-AA-AC--ACTC-ACG-CTAC-
gi|1 : aatcaatcaatcaatttagtcaagcaaA-TCTGGAAATTTCATCAATGGATTGTCTTTTTGTA-TACGTTTTTACACACTG-CCCCATTA-C-GG-GCCATGA--TTGT-AAAAATTG-TTCGTAT-AAA-T-CGT--AAAATTCCATAATATGTTACCATGTAAGTAAATGATGAATATCTGCAACTACATGAAAGACCTTTT-----A----TTCCTATGTGCGCAGGG---GTCCAACCAAAT-GTAA----AACACAAGAAACGT--GG-TGC--T--G--ATTTCGTA--TCAACTTTA----ATACGTGTATGGA-GAAA-A----A--A-C---T-ATAAGGAAAA---ACA--AACT--CTCA----CCTTACCACATA-AA-ACCAACTC-ACG-CTACCATTTTAAACGACAGTTTAG--ACA---TTTTAGCA---TTTCAACTACCACCA-TAACGTTGGCGGTACAA---TA--CACAACATTT-AGAATTACGTAGCCATTGAAAATAATTAAATCAATATAATAAAATAGCACATAT-AA-TCTTACCAGTGACTCCAGTA-GATA-TATAAATGAAGCTTTATATCTTATAAGTTCACATTA-GTGTAACTC--TGTACGCGACG-TGA-GGTATAGCAGAAAAGTCTCATGCGTGTATTAAAAAGTGCGGCG-GAGTTGCTTTTATATTGCAGTGATCAGGTG-GTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCTCAACAAACAGTCTCCATCATGACTGGA--CACATACCGTACTATCGTTACTGATCGCTTGTTACACCAC-CACACGTCGCACACGTAGTCGATTGGCTATGCGCGTGCGCACATA-CAGTCTAAACAGCA-AACTGTAGAAT-CTATTTATTAT----TCGAATTTCA--TCAGAACTATTATTCGCCCTGTTATCTAATAAGGAATTATTCCTACACAAACTAATA---AAAAA-TGA-TTTTTCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAACCTTTGGTTCTTC---------AT-----CTCAGATGGGCAAGAAGTATACGCGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTTTAGACTTT-TGTTGATGTCTAATCGAG--GTCGAGTCTTTGTCGAAT-TTTGTTTCTGATTTTTCTT-TACCTATTTGGCTGGGAGAT-CGTCTATTTCTGCTGTCACC
gi|5 : aatcaatcatactcaaattcttaattcagcaatcAAATT-CATCA-TGGATTGT----TTGTA-TA----TNNN-NNNNNN-NN--NNNN-N-NN-NN-NNNNNNNNNN-NNNN--N--NNNNNNN-NNN-N-NNNNNAAA--TTCATAATATGT-AC-ATGTAAGTA-ATGATGAATAT--GAAAC-A-ATGAA-GACTTTTA----------T--CTATGTCG-CAGGG----TCCAA-CAAAT-GTAA----AACACAA-AAACGTT-GG-T-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA----C--TAC-ACATA-AA-AC--ACTC-ACG-CTAC-ATTT-AAA
gi|15 : -ACACTG-TC--ATTT-G-GG-GA-AT--ACTTGA-AAAAA-C--TTTGTATTAAA-T-CGT--AAA--TTCA
gi|14 : CTG-TC--ATTG-CAGG-GA-GTGA--TTGTTAAAG--T--CTTGTAT-AAA-AACGT--AAA--TTCATAATAT
gi|8 : TAAA-AATTTTTA-----ACAATT--CTGTATC-----GGCACGTCCAA-CAATT-G---------CACAA-AA-CGTTAGTCT-C--T--G--GGTTCGTA--TATA-TTGA----AT--GTGTA-GGAAGAAA-AAAACA--A-C--CTCCTAAG-AAAAAC-ACA--AACT---TCA----
gi|16 : tgatctttgacacatgttaccattaaaaaaataaaatctcccaaaataggggttTGTCG-CAGGG---CCCAA--CAA-T-GTAA----AACAC---AAACG-TTGA-T-CTGT--G--GATTCGT
gi|6 : GG---GTCCAA-CAAAT-GTAA----AACA----AAACGTT-GG-T-C--T--GTGGGTTC--------A-TTTA----AT--GTGTATGGAAGAAA-A----A--AAC--CT-ATAAG-AAAAC--ACA--AACT--CTCA----C--ACC-ACAAT-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGACATTTCG--ACA---TT-TA-CA---TTTCAAC-------A-TA-CTTTGGCAGTACAAAATTAACCACAACAT-------T-ACGCTACCAATGAAAATAA-TTA-TCAA-AT-A--AAATA-CAAATATAAAATCTTACCAG-GACTTCAGTA-AATAA-ATA
gi|7 : cgcaGG---GTCCAA-CAAGTTGCAATAAGAACACAA-AAGCGTT-GG-T-C--TCTG--GGTTCGTAATTCA--TTTA----AT--GTGTATGGAAGAAA-A----A--A-AAACT-ATAAG-AAAA---ACACAAACT--CTCA----C--AAC-ACAAATAA-AC--ACTC-ACA-CTAC-ATTT-AAAC--------AG--ACA---TT-TA-CA---TTTCAAC-------A-TA-CATTGGCAGTACAAA--TAA-CACAACAT-------T-ACGCTACCAA-GAAAATAA-TTA-TCAATATAA--AAATA--AAATAT-AAAT
gi|9 : cgcaATTCTCA--TTA--TTTATATTAT--GTATGTGGACGAAATA----AGGA-T--CT-TTAAG-AAAATGAACA--AAATTCCTCAACAAC--CAC-AAATA-AACAC--ACTCCACGGCTAC-ATTT-AAAC-AGAGTTAAGCAACATTGTTATA-CATTGTTCGAGC-------ATTA-CGTGGGCAATGTGAA--CAA-
gi|10 : tcgttaACT--CT-A----T--AAC-ACATT-AA-AC--ACTC-ATG-TTAC-ATTT-AAATAGACATTTAG--ACA---TCGCA-CA---TTTAAAC---------TA-AATTGGCATTACAAA--TAA-T---ACATTTTAGAAT-ATGCCAACATTGAAAAATAATTA-TCAATAGAAT-AAATA-TAAATaattac
gi|13 : TACCAG-GACTCCAGTAATATAATATAAAGAAAG-TTTATAT--TATA-GTTCA-AT-A-GT-TAC-AC--T--A-GCGACCGTGAAGGTAT-ACAGAAAATC
gi|17 : TACCAG-GACTCCAGTAATATAATACAAAGGAAG-TTTATAT--TATA-GTTTA-tc
gi|11 : G-GACTCCAGTAATATAATGTAAATGAAG-TTTGTAT--TATA-GTCTA-AT-ATCC-CACTTCTTTG-A-GTGACCATGGAGGTAT-ACAGAAAAT-CTCATG-G-GTTATAAAAA----------AGTTGCTTTT
gi|1 : TTAAAAT-GGTAGCGTGAGTTGGTTTTATGT-G--GTAA---GGTGAG
gi|3 : aatcaatcatactcaaattcttaattcagcaatcatctggaaatttcatcaatggattgtctttttgtatacgtttttacacactgccccattacgggccatgattgtaaaaattgttcgtataaatcgtaaaattccataatatgttaccatgtaagtaaatgatgaatatctgcaactacatgaaagaccttttattcctatgtgcgcaggggtccaaccaaatgtaaaacacaagaaacgtggtgctgatttcgtatcaactttaatacgtgtatggagaaaaaactataaggaaaaacaaactCGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGC--AACTGTGACAT-CTATTTATTATTAAATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAAAGAATTAT-CTTACC-AAAACAATATATAAAAACTGATTTTT----------CA-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAA-CCTTC--TTCTTCTTTGGCCAAATGTTCATTCAGAT--GCACGAAG-ATA--CGTGTATNNNNNNNNN-NNNNNNNNNNNN--NNNNNNN--NNNNNNNN-NNN--NNNN-NNNNNNNNNNTTGT-----TA-T---TCAAGAGGTCGA-TGTTTTC--AA--ATTTTTTCTGATTTTTCTTACATCTA--TGGCA-GGAGATacgacagtttagacattttagcatttcaactaccaccataacgttggcggtacaatacacaacatttagaattacgtagccattgaaaataattaaatcaatataataaaatagcacatataatcttaccagtgactccagtagatatataaatgaagctttatatcttataagttcacattagtgtaactctgtacgcgacgtgaggtatagcagaaaagtctcatgcgtgtattaaaaagtgcggcggagttgcttttatattgcagtgatcaggtggtaccaagtgcattcacttaatttccatgttctaaagtctcaacaaacagtctccatcatgactggacacataccgtactatcgttactgatcgcttgttacaccaccacacgtcgcacacgtagtcgattggctatgcgcgtgcgcacatacagtctaaacagcaaactgtagaatctatttattattcgaatttcatcagaactattattcgccctgttatctaataaggaattattcctacacaaactaataaaaaatgatttttcgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaacctttggttcttcatctcagatgggcaagaagtatacgcgtgtatataattaaatttttgcacacggtctcctccctgatcctgtagatttcaggcgtttttagacttttgttgatgtctaatcgaggtcgagtctttgtcgaattttgtttctgatttttctttacctatttggctgggagatcgtctatttctgctgtcacc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TGATCTTTGACCACATGACCTTAACAATCAAATGGGGTTATTCACATCTGTCGCAGCTCCAACAATTGCAAAAACGTTGTTCTCTGGGTTCGT
Unaligned ( gi|18 ): AACATCTAGAAATCGCATATTGAATTTGCTTCATATATTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 2222 1 111 1111111 1111 111111 111 1 11 1 11 111 3333333333333 22 11 1111 1111 222 222222 3333333 222222222 111111 11 11 11 1 11 111111 22 111 111 1111 3333 22 1 222 1 222 2222 11 1 1 222 2222 1 22 1 1 1 11 2 1 444444 1 22 1 1 333333333 22 33 2 1 1 333 2 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 33 2 33 1 11 11 1 11 1 33333333333 777777777 1 2 3333333 33 22 1 11 222
lowQualScore : 5 0 9 1111 0 777 1 1 9999999 0000 6 6 0 99 555555 6 000 6 99 0 33 2 0 33 111 8 9999999999999 4 4 44 4 3 4 3 9999 4 4 66 4 66 22 66 77 5 0000 66 0 5 0000 66 7777 5 5 777 66 66 4 888 5 88888 5 66 5 5 5 5 777777 99 0000000 99 6 777777777 6 3 99 6 0 8 333333 8 11 8 8 11 0 66 8 11 0 3 6 7 1 8 11 8 8 222222 33 6 111 99 3 111 6 9999 88 8888 11 5 111 5 111 4444 88 5 5 111 3333 5 77 5 5 5 77 2 0 5 111111 3 22 3 7 11 3 999999999 00 1 00 6 6 3 3 5 4 1 777 3 7 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 00 1 3 00 0 22 22 0 22 0 00000000000 111111111 7 6 3 1 1 3333333 1 7 0 00 44 3 88 111
lowQualScore : . . . .... . ... . . ....... .... . . . .. ...... . ... . .. . .. . . .. ... . ............. . . .. . . . . .... . . .. . .. .. .. .. . .... .. . . .... .. .... . . ... .. .. . ... . ..... . .. . . . . ...... .. ....... .. . ......... . . .. . . . ...... . .. . . .. . .. . .. . . . . . . .. . . ...... .. . ... .. . ... . .... .. .... .. . ... . ... .... .. . . ... .... . .. . . . .. . . . ...... . .. . . .. . ......... .. . .. . . . . . . . ... . . ............................................................................................................. .. . . .. . .. .. . .. . ........... ......... . . . . . ....... . . . .. .. . .. ...
lowQualScore : 0 0 0 2222 0 555 0 0 3333333 3333 7 7 2 22 333333 7 333 7 22 0 22 5 0 88 000 0 8888888888888 4 4 44 4 9 4 6 4444 4 4 11 4 11 22 11 99 0 6666 99 1 0 6666 99 0000 0 0 555 99 11 4 888 0 88888 0 99 0 0 0 7 222222 22 2222222 22 7 555555555 7 2 22 7 8 0 000000 0 88 0 0 00 8 22 0 22 0 2 7 3 0 0 00 0 0 000000 88 5 000 00 2 000 5 0000 33 3333 55 0 000 5 000 0000 00 5 0 000 5555 5 55 5 0 0 55 5 0 0 000000 3 33 3 3 77 3 333333333 77 0 33 7 7 7 7 3 0 0 777 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 00 0 7 00 7 77 77 3 77 3 33333333333 000000000 3 7 3 0 0 7777777 0 3 7 77 33 3 00 000
consensus : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA---TTTTACAC----CG-CCATTA-C-GG-GA-ATGAACTTGTAAAAAT-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA-----A----T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACG-TTG--GT-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---AAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGAC-GTTTAG--ACATTG---T--ACAT--TTC-AAC-------A-TA-CGTTGGCAGTACAAA--TAA-CACAACA-TTTAGAAT-ACGCTACCAATG-AAAATAA-TTA--TCAATATAATAAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAATGAAG-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--CTCTG-A-GCGACCGTGAAGGTAT-A-CAGAAAATCCTCATG-GTGTATTAAAAA-G--CGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCNCAACAAACAGTCTCCATCATGACTGGAACCACATACCGTACTATCGTTACTGATCGCTTGTTACANCACACACACGTCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAGT-TAAACAGCG-AACTGTGACAT-CTATTTATTAT-A-ATC---TTTCAT-TCAGAACTTTTAT--GCCCTGTTATC-AATAANGAATTAT-CCTAC-CAAAACAATA---AAAAA-TGATTTTT---AT------CATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC-TT------AT-----CTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTCCAGACTTT-TGTT-AT------TCAAGAGGTCGA-TCTTTGC--AAT-TTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGAT-CGTCTATTTCTGCTGTCACC
Reference ( family-543 ) : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA---TNTNACAC----CG-CCATTN-C-GG-GA-ATGAACTTGTAAAAAN-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA-----A----T--CTATGT-CG-CAGGGGTCCAAC-AAAT-GTAA----AACACAA-AAACG-TTG--GT-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---AAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACGGAC-GTTTAG--ACATT----T--ACAT--TTC-AAC-------A-TA-CGTTGGCAGTACAAA--TAA-CACAACA-TTTAGAAT-ACGCTACCANTG-AAAATAA-TTA--TCAATATAATAAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAANGAAG-TTTATAT--TATA-GTTCA-AT-A-GT-TAC--CTCTG-A-GCGACCGTGAAGGTAT-A-CAGAAAATCCTCATGCGTGTNTTAAAAA-G--CGGCGGAGTTGCTTTTATGTTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCTCAACAAACAGTCTCCATCATGACTGGA--CACATACCGTACTATCGTTACTGATCGCTTGTTACACCAC-CACACGTCGCACACGTAGTCGATTGGCTATGCGCGCGCGCACATA-CAGTCTAAACAGCA-AACTGTGGNAT-CTATTTATTATTAAATCGAATTTCAT-TCAGAACTNTTATTCGCCCTGTTATCTAATAAGGAATTATTCCTACNCAAANCAATATATAAAAACTGATTTTTTCGAT------CATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAACCTTCGGTTCTTCTTTGGCCAAATGTTCACTCAGATGGGCANGAAGTATACGCGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTTTAGACTTTGTGTTGATGTCTAATCGAGAGGTCGAGTNTTTNCCGAAT-NTTNTTTCTGATTTTTCTTACACCTATTTGGCNGGGAGAT-CGTCTATTTCTGCTGTCACC
gi|1 : TCTGGAAATTTCATCAATGGATTGTCTTTTTGTA-TACGTTTTTACACACTGCC-CCATTA-C-GG-GCCATGA--TTGTAAAAAT-TGTTCGTAT-AAA-T-CGT-AAAATTCCATAATATGTTACCATGTAAGTAAATGATGAATATCTGCAACTACATGAAAGACCTTTT-----A----TTCCTATGTGCG-CAGGGGTCCAACCAAAT-GTAA----AACACAAGAAACG-T-G--GTGC--T--G--ATTTCGTA--TCAACTTTA----ATACGTGTATGGA-GAAA-A----A--A-C---T-ATAAGGAAAA---ACA--AACT--CTCA-CCTTACC-ACA--TA-AA-ACCAACTC-ACG-CTACCATTTTAAACG-ACAGTTTAG--ACATT----TTAGCAT--TTC-AACTACCACCA-TAACGTTGGCGGTACAA---TA--CACAACA-TTTAGAATTACGTAGCCATTG-AAAATAA-TTAAATCAATATAATAAAATAGCACATAT-AA-TCTTACCAGTGACTCCAGTAG-ATA-TATAAATGAAGCTTTATATCTTATAAGTTCACATTA-GTGTAA--CTCTGTACGCGAC-GTGA-GGTAT-AGCAGAAAAGTCTCATGCGTGTATTAAAAA-GTGCGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTG-GTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCTCAACAAACAGTCTCCATCATGACTGGA--CACATACCGTACTATCGTTACTGATCGCTTGTTACACCAC-CACACGTCGCACACGTAGTCGATTGGCTATGCGCGTGCGCACATA-CAGTCTAAACAGCA-AACTGTAGAAT-CTATTTATTAT----TCGAATTTCA--TCAGAACTATTATTCGCCCTGTTATCTAATAAGGAATTATTCCTACACAAACTAATA---AAAAA-TGA-TTTTTCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAACCTTTGGTTCTTC---------AT-----CTCAGATGGGCAAGAAGTATACGCGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTTTAGACTTT-TGTTGATGTCTAATC--GAGGTCGAGTCTTTGTCGAAT-TTTGTTTCTGATTTTTCTT-TACCTATTTGGCTGGGAGAT-CGTCTATTTCTGCTGTCACC
gi|10 : aatcaatcatactcaaattcttaattcagcaatcaACT--CT-A-T---AAC-ACA--TT-AA-AC--ACTC-ATG-TTAC-ATTT-AAATAGAC-ATTTAG--ACATCG---C--ACAT--TTA-AAC---------TA-AATTGGCATTACAAA--TAA-TACA--T-TTTAGAAT-ATGCCAACATTGAAAAATAA-TTA--TCAATAGAATAAA-TA-TAAAT
gi|11 : G-GACTCCAGTAATATAATGTAAATGAAG-TTTGTAT--TATA-GTCTA-AT-ATCC-CACTTCTTTG-A-GTGACCATGGAGGTAT-A-CAGAAAAT-CTCATGGGT-TA-TAAAAA----------AGTTGCTTTT
gi|12 : TGT-CG-CAGC--TCCAAC-AATT-G-----------CAA-AAACG-TTGTTCT-C--T--G--GGTTCGT
gi|13 : tgatctttgaccacatgaccttaacaatcaaatggggttattcacatcTACCAG-GACTCCAGTAATATAATATAAAGAAAG-TTTATAT--TATA-GTTCA-AT-A-GT-TACA-CT----A-GCGACCGTGAAGGTAT-A-CAGAAAATC
gi|14 : C----TG-TCATTG-CAGG-GA-GTGA--TTGTTAAAGT-C--TTGTAT-AAA-AACGT-AAA--TTCATAATATtc
gi|15 : ACAC----TG-TCATTT-G-GG-GA-AT--ACTTGAAAAAAC-T--TTGTATTAAA-T-CGT-AAA--TTCA
gi|16 : TGT-CG-CAGGG-CCCAAC-AA-T-GTAA----AACAC---AAACG-TTG--AT-CTGT--G--GATTCGT
gi|17 : TACCAG-GACTCCAGTAATATAATACAAAGGAAG-TTTATAT--TATA-GTTTA-
gi|2 : ATA-TCTGGAAATT-CATCA-TGGATTGT----TGGTA-TA---TTTAACAC----TG-CCATTA-C-GG-GA-ATGAACTTGTAAAA-T-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAA---A-TGATGAATAT--GAAAC-A-ATGAA-GATTTTTA-----A----T--CTATGT-CC-CAGGGGTCC-AC-AAAT-GTAA----AACACAA-AAACGTTTG--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGAAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---TAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAAGA-ATTTAG--ACATTA---T--AC-T--TTC-AAC-------A-TA-CGT--GCAGTACAAA--TAA-CACAACATTTTAGAAT-ACGCTACCAATG-AAAAAAATTTA--TCAATATAA-AAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGT-ATATAATATAAATGAAA-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--TTCTG-A-GCGACC-TGAAGGTATAA-CAGAAAGTCCTCATG-G-GTATTAAAAATG--CGGCGGAGTTGCTTTTATA-TG-AGTG---AGGTGAGTAC---ATGCAT--A-TTAATT--CA-GTT-TAAAG--GCAACAAACA----TCA-CATGACTGGAACCACAT-CCGTACTATC-TTACT-AT--CTTGTTACAACACACACAC-TCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATAGCAG--TAAACAGCGCAACTGTGACATGCTATTTATTATAACATC---TTTCATGTCAGAACTTTTAT--G-CCTGTTATC-AAAAATGAATTATGCCTACCTAAAACAATA---AAAAA-TGATTTTC---AT--------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTCATT--------------TCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAA-TTTTGCACACGG--TCCTCCC--ATTCTGTA-ATT--AAGC-TTTCCAGACTTTTTATT---------TCAAGA-GTCGA-TCTTTGC--AATCTTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGATACG--TAT---TGCTGTCACC
gi|3 : CGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAGT--AAACAGCA-A-CTGTGACAT-CTATTTATTATTAAATC---TTTCAT-TCAGAACTTTTAT--GCC-TGTTATC-AATAAAGAATTAT-CTTAC-CAAAACAATATATAAAAACTGATTTTT-----------CATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAA-CCTTC--TTCTTCTTTGGCCAAATGTTCATTCAGAT--GCACGAAG-ATA--CGTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-----------TGTT-AT------TCAAGAGGTCGA-TGTTTTC--AA--ATTTTTTCTGATTTTTCTTACATCTA--TGGCA-GGAGAT-
gi|4 : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTAATA---TGTTATAC----CATCCATTAAC-GGTGA-ATGAACTTGTAAAAAAAT--TCGTAT-AAAAT-CGT-AAA--TTCATAATATGT-AT-------GTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTGTATCTACA----T--GTATAT-TG-CAGGG-TCCAAC-AAAT-GTAA----AACGCAA-AAACG-TTG--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAAAC-ACA--AATT--CTCA-C---AAC-ACG--TG-AA-AC--ACTC-ACG-CTAC-
gi|5 : aatcaatcaatcaatttagtcaagcaaAAATT-CATCA-TGGATTGT----TTGTA-TA---TNNNNNNN----NN-NNNNNN-N-NN-NN-NNNNNNNNNNNNNNNN-N--NNNNNN-NNN-N-NNNNAAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA----------T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACG-TTG--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---TAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAA
gi|6 : -CG-CAGGG-TCCAAC-AAAT-GTAA----AACA----AAACG-TTG--GT-C--T--GTGGGTTC--------A-TTTA----AT--GTGTATGGAAGAAA-A----A--AAC--CT-ATAAG-AAAAC--ACA--AACT--CTCA-C---ACC-ACA--AT-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGAC-ATTTCG--ACATT----T--ACAT--TTC-AAC-------A-TA-CTTTGGCAGTACAAAATTAACCACAACA-T------T-ACGCTACCAATG-AAAATAA-TTA--TCAA-ATA--AAA-TA-CAAATATAAAATCTTACCAG-GACTTCAGTAA-ATAA-ATA
gi|7 : -CG-CAGGG-TCCAAC-AAGTTGCAATAAGAACACAA-AAGCG-TTG--GT-C--TCTG--GGTTCGTAATTCA--TTTA----AT--GTGTATGGAAGAAA-A----A--A-AAACT-ATAAG-AAAA---ACACAAACT--CTCA-C---AAC-ACA--AATAA-AC--ACTC-ACA-CTAC-ATTT-AAAC---------AG--ACATT----T--ACAT--TTC-AAC-------A-TA-CATTGGCAGTACAAA--TAA-CACAACA-T------T-ACGCTACCAA-G-AAAATAA-TTA--TCAATATAA-AAA-TA--AAATAT-AAAT
gi|8 : TAAA-AATTTTTA-----ACAATT--CTGTAT-CGGCACG--TCCAAC-AATT-G---------CACAA-AA-CG-TTA--GT-C--TCTG--GGTTCGTA--TATA-TTGA----AT--GTGTA-GGAAGAAA-AAAACA--A-C--CTCCTAAG-AAAAAC-ACA--AACT---TCA-
gi|9 : tgatctttgacacatgttaccattaaaaaaataaaatctcccaaaataggggttA-TTTATATTAT--GTATGTGGACGAAATA----AGGA-T--CT-TTAAG-AAAATGAACA--AAATTCCTCAAC---AACCACAAATA-AACAC--ACTCCACGGCTAC-ATTT-AAACAGA--GTTAAGCAACATTGTTAT--ACATTGTTCGAGC-------ATTA-CGTGGGCAATGTGAA--CAA-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AACATCTAGAAATCGCATATTGAATTTGCTTCATATATTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 2222 1 111 1111111 111111 111 1 11 1 11 111 3333333333333 11 11 1111 1111 222 2222 222222222 111111 11 11 11 1 11 111111 22 111 111 111 3333 1 1 222 1 222 2222 11 1 1 111 2222 1 11 1 1 1 11 1 1 222 1 1 33 22 1 44444444444 22 3333 1 111 111 222 1 22222222222222222222222222222222222222222222222222222222222222222222222222 1 11 99999999999999999 11 1 11 11 11 1 11 1 22222 1 11 1 222222 11 1 1 11 222
lowQualScore : 5 0 9 1111 0 777 9999999 999 6 6 0 99 333333 6 000 6 99 0 33 2 0 33 111 8 9999999999999 4 4 00 4 4 3 9999 4 4 66 4 66 22 66 77 5 0000 66 0 5 0000 66 7777 5 5 777 66 66 4 888 5 88888 5 66 5 5 5 5 999 99 1111 6 99 6 777777777 6 3 99 6 0 8 333333 8 22 8 8 11 0 66 8 11 0 3 6 7 0 8 11 8 8 222222 33 6 111 99 3 111 6 888 7 8888 5 5 111 5 111 4444 88 5 5 999 3333 5 88 5 5 5 77 1 5 5 333 3 3 77 55 3 77777777777 00 1111 3 1 777 666 333 3 44444444444444444444444444444444444444444444444444444444444444444444444444 2 88 00000000000000000 88 3 88 7 7 22 22 0 22 0 7 22222 3 88 6 3 111111 7 88 3 3 88 111
lowQualScore : . . . .... . ... ....... ... . . . .. ...... . ... . .. . .. . . .. ... . ............. . . .. . . . .... . . .. . .. .. .. .. . .... .. . . .... .. .... . . ... .. .. . ... . ..... . .. . . . . ... .. .... . .. . ......... . . .. . . . ...... . .. . . .. . .. . .. . . . . . . .. . . ...... .. . ... .. . ... . ... . .... . . ... . ... .... .. . . ... .... . .. . . . .. . . . ... . . .. .. . ........... .. .... . . ... ... ... . .......................................................................... . .. ................. .. . .. . . .. .. . .. . . ..... . .. . . ...... . .. . . .. ...
lowQualScore : 0 0 0 2222 0 555 3333333 333 7 7 2 22 888888 7 333 7 22 0 22 5 0 88 000 0 8888888888888 4 4 00 4 4 6 4444 4 4 11 4 11 22 11 99 0 6666 99 1 0 6666 99 0000 0 0 555 99 11 4 888 0 88888 0 99 0 0 0 7 888 22 0000 7 22 7 555555555 7 2 22 7 8 0 000000 0 22 0 0 00 8 22 0 22 0 2 7 3 6 0 00 0 0 000000 88 5 000 00 2 000 5 777 3 3333 5 0 000 5 000 0000 00 5 0 000 5555 5 00 5 0 0 55 0 5 0 333 3 3 00 33 3 33333333333 77 7777 3 0 777 777 333 3 33333333333333333333333333333333333333333333333333333333333333333333333333 0 33 00000000000000000 33 3 33 3 3 77 77 3 77 3 3 00000 3 33 7 3 000000 3 33 3 3 00 000
consensus : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA---TTTTACAC----CG-CCATTA-C-GG-GA-ATGAACTTGTAAAAAT-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA-----A----T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---AAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGAC-GTTTAG--ACATTG---TA-CAT--TTC-AAC-------A-TA-CGTTGGCAGTACAAA--TAA-CACAACA-TTTAGAAT-ACGCTACCAATG-AAAATAA-TTA--TCAATATAATAAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAATGAAG-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--CTCTG-A-GCGACCGTGAAGGTAT-A-CAGAAAATCCTCATG-G-GTATTAAAAA-G--CGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCNCAACAAACAGTCTCCATCATGACTGGAACCACATACCGTACTATCGTTACTGATCGCTTGTTACANCACACACACGTCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGCG-AACTGTGACAT-CTATTTATTAT--A--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAANGAATTA-T-CCTAC-C-AAAACAATA---AAAAA-TGATTTTC--------ATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTCCAGACTTTTGTT-A-T-TC-AA--GAGGTCGA-TCTTTGC--AAT-TTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGAT-CGTCTATTTCTGCTGTCACC
Reference ( family-543 ) : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA---TTTTACAC----CG-CCATTA-C-GG-GA-ATGAACTTGTAAAAAT-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA-----A----T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---AAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGAC-GTTTAG--ACATTG---TA-CAT--TTC-AAC-------A-TA-CGTTGGCAGTACAAA--TAA-CACAACA-TTTAGAAT-ACGCTACCAATG-AAAATAA-TTA--TCAATATAATAAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAATGAAG-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--CTCTG-A-GCGACCGTGAAGGTAT-A-CAGAAAATCCTCATG-GTGTATTAAAAA-G--CGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCNCAACAAACAGTCTCCATCATGACTGGAACCACATACCGTACTATCGTTACTGATCGCTTGTTACANCACACACACGTCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAGT-TAAACAGCG-AACTGTGACAT-CTATTTATTAT--A--ATC---TTTCAT-TCAGAACTTTTAT--GCCCTGTTATC-AATAANGAATTA-T-CCTAC-C-AAAACAATA---AAAAA-TGATTTTT--------ATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTCTT-------AT-----CTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTCCAGACTTTTGTT-A-T-TC-AA--GAGGTCGA-TCTTTGC--AAT-TTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGAT-CGTCTATTTCTGCTGTCACC
gi|1 : TCTGGAAATTTCATCAATGGATTGTCTTTTTGTA-TACGTTTTTACACACTGCC-CCATTA-C-GG-GCCATGA--TTGTAAAAAT-TGTTCGTAT-AAA-T-CGT-AAAATTCCATAATATGTTACCATGTAAGTAAATGATGAATATCTGCAACTACATGAAAGACCTTTT-----A----TTCCTATGTGCG-CAGGGGTCCAACCAAAT-GTAA----AACACAAGAAACGT--G--GTGC--T--G--ATTTCGTA--TCAACTTTA----ATACGTGTATGGA-GAAA-A----A--A-C---T-ATAAGGAAAA---ACA--AACT--CTCA-CCTTACC-ACA--TA-AA-ACCAACTC-ACG-CTACCATTTTAAAC-GACAGTTTAG--ACATTT---TAGCAT--TTC-AACTACCACCA-TAACGTTGGCGGTACAA---TA--CACAACA-TTTAGAATTACGTAGCCATTG-AAAATAA-TTAAATCAATATAATAAAATAGCACATAT-AA-TCTTACCAGTGACTCCAGTAG-ATA-TATAAATGAAGCTTTATATCTTATAAGTTCACATTA-GTGTAA--CTCTGTACGCGAC-GTGA-GGTAT-AGCAGAAAAGTCTCATGCGTGTATTAAAAA-GTGCGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTG-GTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCTCAACAAACAGTCTCCATCATGACTGGA--CACATACCGTACTATCGTTACTGATCGCTTGTTACACCAC-CACACGTCGCACACGTAGTCGATTGGCTATGCGCGTGCGCACATA-CAGTCTAAACAGCA-AACTGTAGAAT-CTATTTATTAT------TCGAATTTCA--TCAGAACTATTATTCGCCCTGTTATCTAATAAGGAATTATT-CCTACAC-AAACTAATA---AAAAA-TGATTTTTCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAACCTTTGGTTCTTC---------AT-----CTCAGATGGGCAAGAAGTATACGCGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTTTAGACTTTTGTTGA-TGTCTAATCGAGGTCGAGTCTTTGTCGAAT-TTTGTTTCTGATTTTTCTT-TACCTATTTGGCTGGGAGAT-CGTCTATTTCTGCTGTCACC
gi|10 : aatcaatcatactcaaattcttaattcagcaatcaACT--CT-A-T---AAC-ACA--TT-AA-AC--ACTC-ATG-TTAC-ATTT-AAATAGAC-ATTTAG--ACATCG---CA-CAT--TTA-AAC---------TA-AATTGGCATTACAAA--TAA-TACA--T-TTTAGAAT-ATGCCAACATTGAAAAATAA-TTA--TCAATAGAATAAA-TA-TAAAT
gi|11 : G-GACTCCAGTAATATAATGTAAATGAAG-TTTGTAT--TATA-GTCTA-AT-ATCC-CACTTCTTTG-A-GTGACCATGGAGGTAT-A-CAGAAAAT-CTCATG-GGTTA-TAAAAA----------AGTTGCTTTT
gi|12 : TGT-CG-CAGC--TCCAAC-AATT-G-----------CAA-AAACGTT-GTTCT-C--T--G--GGTTCGT
gi|13 : tgatctttgaccacatgaccttaacaatcaaatggggttattcacatcTACCAG-GACTCCAGTAATATAATATAAAGAAAG-TTTATAT--TATA-GTTCA-AT-A-GT-TACA-CT----A-GCGACCGTGAAGGTAT-A-CAGAAAATC
gi|14 : C----TG-TCATTG-CAGG-GA-GTGA--TTGTTAAAGT-C--TTGTAT-AAA-AACGT-AAA--TTCATAATATtc
gi|15 : ACAC----TG-TCATTT-G-GG-GA-AT--ACTTGAAAAAAC-T--TTGTATTAAA-T-CGT-AAA--TTCA
gi|16 : TGT-CG-CAGGG-CCCAAC--AAT-GTAA----AACAC---AAACGTT-G--AT-CTGT--G--GATTCGT
gi|17 : TACCAG-GACTCCAGTAATATAATACAAAGGAAG-TTTATAT--TATA-GTTTA-
gi|2 : ATA-TCTGGAAATT-CATCA-TGGATTGT----TGGTA-TA---TTTAACAC----TG-CCATTA-C-GG-GA-ATGAACTTGTAAAA-T-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAA---A-TGATGAATAT--GAAAC-A-ATGAA-GATTTTTA-----A----T--CTATGT-CC-CAGGGGTCCA-C-AAAT-GTAA----AACACAA-AAACGTTTG--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGAAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---TAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAAGA-ATTTAG--ACATTA---TA-C-T--TTC-AAC-------A-TA-CGT--GCAGTACAAA--TAA-CACAACATTTTAGAAT-ACGCTACCAATG-AAAAAAATTTA--TCAATATAA-AAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGT-ATATAATATAAATGAAA-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--TTCTG-A-GCGACC-TGAAGGTATAA-CAGAAAGTCCTCATG-G-GTATTAAAAATG--CGGCGGAGTTGCTTTTATA-TG-AGTG---AGGTGAGTAC---ATGCAT--A-TTAATT--CA-GTT-TAAAG--GCAACAAACA----TCA-CATGACTGGAACCACAT-CCGTACTATC-TTACT-AT--CTTGTTACAACACACACAC-TCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATAGCAG--TAAACAGCGCAACTGTGACATGCTATTTATTAT--AACATC---TTTCATGTCAGAACTTTTAT--G-CCTGTTATC-AAAAATGAATTA-TGCCTAC-CTAAAACAATA---AAAAA-TGATTTTC--------AT--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAA-TTTTGCACACGG--TCCTCCC--ATTCTGTA-ATT--AAGC-TTTCCAGACTTT--TT-ATT-TC-AA--GA-GTCGA-TCTTTGC--AATCTTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGATACG--TAT---TGCTGTCACC
gi|3 : CGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGC--AACTGTGACAT-CTATTTATTATTAA--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAAAGAATTA-T-CTTAC-C-AAAACAATATATAAAAACTGATTTT----------TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAA-CCTTC--TTCTTCTTTGGCCAAATGTTCATTCAGAT--GCACGAAG-ATA--CGTGT----------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTT-A-T-TC-AA--GAGGTCGA-TGTTTTC--AA--ATTTTTTCTGATTTTTCTTACATCTA--TGGCA-GGAGAT-
gi|4 : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTAATA---TGTTATAC----CATCCATTAAC-GGTGA-ATGAACTTGTAAAAAAAT--TCGTAT-AAAAT-CGT-AAA--TTCATAATATGT-AT-------GTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTGTATCTACA----T--GTATAT-TG-CAGGG-TCCAAC-AAAT-GTAA----AACGCAA-AAACGTT-G--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAAAC-ACA--AATT--CTCA-C---AAC-ACG--TG-AA-AC--ACTC-ACG-CTAC-
gi|5 : aatcaatcaatcaatttagtcaagcaaAAATT-CATCA-TGGATTGT----TTGTA-TA---TNNNNNNN----NN-NNNNNN-N-NN-NN-NNNNNNNNNNNNNNNN-N--NNNNNN-NNN-N-NNNNAAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA----------T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---TAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAA
gi|6 : -CG-CAGGG-TCCAAC-AAAT-GTAA----AACA----AAACGTT-G--GT-C--T--GTGGGTTC--------A-TTTA----AT--GTGTATGGAAGAAA-A----A--AAC--CT-ATAAG-AAAAC--ACA--AACT--CTCA-C---ACC-ACA--AT-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGAC-ATTTCG--ACATT----TA-CAT--TTC-AAC-------A-TA-CTTTGGCAGTACAAAATTAACCACAACA-T------T-ACGCTACCAATG-AAAATAA-TTA--TCAA-ATA--AAA-TA-CAAATATAAAATCTTACCAG-GACTTCAGTAA-ATAA-ATA
gi|7 : -CG-CAGGG-TCCAAC-AAGTTGCAATAAGAACACAA-AAGCGTT-G--GT-C--TCTG--GGTTCGTAATTCA--TTTA----AT--GTGTATGGAAGAAA-A----A--A-AAACT-ATAAG-AAAA---ACACAAACT--CTCA-C---AAC-ACA--AATAA-AC--ACTC-ACA-CTAC-ATTT-AAACAGAC-ATTTA---------------CAT--TTC-AAC-------A-TA-CATTGGCAGTACAAA--TAA-CACAACA-T------T-ACGCTACCAA-G-AAAATAA-TTA--TCAATATAA-AAA-TA--AAATAT-AAAT
gi|8 : TAAA-AATTTTTA-----ACAATT--CTGTAT-CGGCACG--TCCAAC-AATT-G---------CACAA-AA-CGTT-A--GT-C--TCTG--GGTTCGTA--TATA-TTGA----AT--GTGTA-GGAAGAAA-AAAACA--A-C--CTCCTAAG-AAAAAC-ACA--AACT---TCA-
gi|9 : tgatctttgacacatgttaccattaaaaaaataaaatctcccaaaataggggttA-TTTATATTAT--GTATGTGGACGAAATA----AGGA-T--CT-TTAAG-AAAATGAACA--AAATTCCTCAAC---AACCACAAATA-AACAC--ACTCCACGGCTAC-ATTT-AAACAGA--GTTAAGCAACATTGTTATA-CATTGTTCGAGC-------ATTA-CGTGGGCAATGTGAA--CAA-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AACATCTAGAAATCGCATATTGAATTTGCTTCATATATTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 2222 1 111 1111111 111111 111 1 11 1 11 111 3333333333333 11 11 1111 1111 222 2222 222222222 111111 11 11 11 1 11 111111 22 111 111 111 3333 1 1 222 1 222 2222 11 1 1 111 2222 1 11 1 1 1 11 1 1 222 1 1 11 22 1 44444444444 22 2222 1 111 111 222 1 22222222222222222222222222222222222222222222222222222222222222222222222222 1 11 6666666666666666 11 1 11 11 11 1 11 1 22222 1 11 1 222222 11 1 1 11 222
lowQualScore : 5 0 9 1111 0 777 9999999 999 6 6 0 99 333333 6 000 6 99 0 33 2 0 33 111 8 9999999999999 4 4 00 4 4 3 9999 4 4 66 4 66 22 66 77 5 0000 66 0 5 0000 66 7777 5 5 777 66 66 4 888 5 88888 5 66 5 5 5 5 999 99 1111 6 99 6 777777777 6 3 99 6 0 8 333333 8 22 8 8 11 0 66 8 11 0 3 6 7 0 8 11 8 8 222222 33 6 111 99 3 111 6 666 8888 5 5 111 5 111 4444 88 5 5 999 3333 5 88 5 5 5 77 1 5 5 333 3 3 88 55 3 77777777777 00 1111 3 1 777 666 333 3 22222222222222222222222222222222222222222222222222222222222222222222222222 2 88 8888888888888888 88 3 88 7 7 22 22 0 22 0 7 22222 3 88 6 3 111111 7 88 3 3 88 111
lowQualScore : . . . .... . ... ....... ... . . . .. ...... . ... . .. . .. . . .. ... . ............. . . .. . . . .... . . .. . .. .. .. .. . .... .. . . .... .. .... . . ... .. .. . ... . ..... . .. . . . . ... .. .... . .. . ......... . . .. . . . ...... . .. . . .. . .. . .. . . . . . . .. . . ...... .. . ... .. . ... . ... .... . . ... . ... .... .. . . ... .... . .. . . . .. . . . ... . . .. .. . ........... .. .... . . ... ... ... . .......................................................................... . .. ................ .. . .. . . .. .. . .. . . ..... . .. . . ...... . .. . . .. ...
lowQualScore : 0 0 0 2222 0 555 3333333 333 7 7 2 22 888888 7 333 7 22 0 22 5 0 88 000 0 8888888888888 4 4 00 4 4 6 4444 4 4 11 4 11 22 11 99 0 6666 99 1 0 6666 99 0000 0 0 555 99 11 4 888 0 88888 0 99 0 0 0 7 888 22 0000 7 22 7 555555555 7 2 22 7 8 0 000000 0 22 0 0 00 8 22 0 22 0 2 7 3 6 0 00 0 0 000000 88 5 000 00 2 000 5 777 3333 5 0 000 5 000 0000 00 5 0 000 5555 5 00 5 0 0 55 0 5 0 333 3 3 33 33 3 33333333333 77 7777 3 0 777 777 333 3 33333333333333333333333333333333333333333333333333333333333333333333333333 0 33 7777777777777777 33 3 33 3 3 77 77 3 77 3 3 00000 3 33 7 3 000000 3 33 3 3 00 000
consensus : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA---TTTTACAC----CG-CCATTA-C-GG-GA-ATGAACTTGTAAAAAT-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA-----A----T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---AAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGAC-GTTTAG--ACATTG---TA-CAT--TTC-AAC-------A-TA-CGTTGGCAGTACAAA--TAA-CACAACA-TTTAGAAT-ACGCTACCAATG-AAAATAA-TTA--TCAATATAATAAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAATGAAG-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--CTCTG-A-GCGACCGTGAAGGTAT-A-CAGAAAATCCTCATG-G-GTATTAAAAA-G--CGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCNCAACAAACAGTCTCCATCATGACTGGAACCACATACCGTACTATCGTTACTGATCGCTTGTTACANCACACACACGTCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGCG-AACTGTGACAT-CTATTTATTAT--A--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAANGAATTA-T-CCTAC-C-AAAACAATA---AAAAA-TGATTTT--------CATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTCCAGACTTTTGTT-A-T-TC-AA--GAGGTCGA-TCTTTGC--AAT-TTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGAT-CGTCTATTTCTGCTGTCACC
Reference ( family-543 ) : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA---TTTTACAC----CG-CCATTA-C-GG-GA-ATGAACTTGTAAAAAT-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA-----A----T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---AAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGAC-GTTTAG--ACATTG---TA-CAT--TTC-AAC-------A-TA-CGTTGGCAGTACAAA--TAA-CACAACA-TTTAGAAT-ACGCTACCAATG-AAAATAA-TTA--TCAATATAATAAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAATGAAG-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--CTCTG-A-GCGACCGTGAAGGTAT-A-CAGAAAATCCTCATG-G-GTATTAAAAA-G--CGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCNCAACAAACAGTCTCCATCATGACTGGAACCACATACCGTACTATCGTTACTGATCGCTTGTTACANCACACACACGTCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGCG-AACTGTGACAT-CTATTTATTAT--A--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAANGAATTA-T-CCTAC-C-AAAACAATA---AAAAA-TGATTTT--------CATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTCCAGACTTTTGTT-A-T-TC-AA--GAGGTCGA-TCTTTGC--AAT-TTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGAT-CGTCTATTTCTGCTGTCACC
gi|1 : TCTGGAAATTTCATCAATGGATTGTCTTTTTGTA-TACGTTTTTACACACTGCC-CCATTA-C-GG-GCCATGA--TTGTAAAAAT-TGTTCGTAT-AAA-T-CGT-AAAATTCCATAATATGTTACCATGTAAGTAAATGATGAATATCTGCAACTACATGAAAGACCTTTT-----A----TTCCTATGTGCG-CAGGGGTCCAACCAAAT-GTAA----AACACAAGAAACGT--G--GTGC--T--G--ATTTCGTA--TCAACTTTA----ATACGTGTATGGA-GAAA-A----A--A-C---T-ATAAGGAAAA---ACA--AACT--CTCA-CCTTACC-ACA--TA-AA-ACCAACTC-ACG-CTACCATTTTAAAC-GACAGTTTAG--ACATTT---TAGCAT--TTC-AACTACCACCA-TAACGTTGGCGGTACAA---TA--CACAACA-TTTAGAATTACGTAGCCATTG-AAAATAA-TTAAATCAATATAATAAAATAGCACATAT-AA-TCTTACCAGTGACTCCAGTAG-ATA-TATAAATGAAGCTTTATATCTTATAAGTTCACATTA-GTGTAA--CTCTGTACGCGAC-GTGA-GGTAT-AGCAGAAAAGTCTCATGCGTGTATTAAAAA-GTGCGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTG-GTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCTCAACAAACAGTCTCCATCATGACTGGA--CACATACCGTACTATCGTTACTGATCGCTTGTTACACCAC-CACACGTCGCACACGTAGTCGATTGGCTATGCGCGTGCGCACATA-CAGTCTAAACAGCA-AACTGTAGAAT-CTATTTATTAT------TCGAATTTCA--TCAGAACTATTATTCGCCCTGTTATCTAATAAGGAATTATT-CCTACAC-AAACTAATA---AAAAA-TGATTTTTCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAACCTTTGGTTCTTC---------AT-----CTCAGATGGGCAAGAAGTATACGCGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTTTAGACTTTTGTTGA-TGTCTAATCGAGGTCGAGTCTTTGTCGAAT-TTTGTTTCTGATTTTTCTT-TACCTATTTGGCTGGGAGAT-CGTCTATTTCTGCTGTCACC
gi|10 : aatcaatcatactcaaattcttaattcagcaatcaACT--CT-A-T---AAC-ACA--TT-AA-AC--ACTC-ATG-TTAC-ATTT-AAATAGAC-ATTTAG--ACATCG---CA-CAT--TTA-AAC---------TA-AATTGGCATTACAAA--TAA-TACA--T-TTTAGAAT-ATGCCAACATTGAAAAATAA-TTA--TCAATAGAATAAA-TA-TAAAT
gi|11 : G-GACTCCAGTAATATAATGTAAATGAAG-TTTGTAT--TATA-GTCTA-AT-ATCC-CACTTCTTTG-A-GTGACCATGGAGGTAT-A-CAGAAAAT-CTCATG-G-GTTATAAAAA----------AGTTGCTTTT
gi|12 : TGT-CG-CAGC--TCCAAC-AATT-G-----------CAA-AAACGTT-GTTCT-C--T--G--GGTTCGT
gi|13 : tgatctttgaccacatgaccttaacaatcaaatggggttattcacatcTACCAG-GACTCCAGTAATATAATATAAAGAAAG-TTTATAT--TATA-GTTCA-AT-A-GT-TACA-CT----A-GCGACCGTGAAGGTAT-A-CAGAAAATC
gi|14 : C----TG-TCATTG-CAGG-GA-GTGA--TTGTTAAAGT-C--TTGTAT-AAA-AACGT-AAA--TTCATAATATtc
gi|15 : ACAC----TG-TCATTT-G-GG-GA-AT--ACTTGAAAAAAC-T--TTGTATTAAA-T-CGT-AAA--TTCA
gi|16 : TGT-CG-CAGGG-CCCAAC--AAT-GTAA----AACAC---AAACGTT-G--AT-CTGT--G--GATTCGT
gi|17 : TACCAG-GACTCCAGTAATATAATACAAAGGAAG-TTTATAT--TATA-GTTTA-
gi|2 : ATA-TCTGGAAATT-CATCA-TGGATTGT----TGGTA-TA---TTTAACAC----TG-CCATTA-C-GG-GA-ATGAACTTGTAAAA-T-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAA---A-TGATGAATAT--GAAAC-A-ATGAA-GATTTTTA-----A----T--CTATGT-CC-CAGGGGTCCA-C-AAAT-GTAA----AACACAA-AAACGTTTG--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGAAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---TAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAAGA-ATTTAG--ACATTA---TA-C-T--TTC-AAC-------A-TA-CGT--GCAGTACAAA--TAA-CACAACATTTTAGAAT-ACGCTACCAATG-AAAAAAATTTA--TCAATATAA-AAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGT-ATATAATATAAATGAAA-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--TTCTG-A-GCGACC-TGAAGGTATAA-CAGAAAGTCCTCATG-G-GTATTAAAAATG--CGGCGGAGTTGCTTTTATA-TG-AGTG---AGGTGAGTAC---ATGCAT--A-TTAATT--CA-GTT-TAAAG--GCAACAAACA----TCA-CATGACTGGAACCACAT-CCGTACTATC-TTACT-AT--CTTGTTACAACACACACAC-TCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATAGCAG--TAAACAGCGCAACTGTGACATGCTATTTATTAT--AACATC---TTTCATGTCAGAACTTTTAT--G-CCTGTTATC-AAAAATGAATTA-TGCCTAC-CTAAAACAATA---AAAAA-TGATTTT--------CAT--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAA-TTTTGCACACGG--TCCTCCC--ATTCTGTA-ATT--AAGC-TTTCCAGACTTT--TT-ATT-TC-AA--GA-GTCGA-TCTTTGC--AATCTTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGATACG--TAT---TGCTGTCACC
gi|3 : CGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGC--AACTGTGACAT-CTATTTATTATTAA--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAAAGAATTA-T-CTTAC-C-AAAACAATATATAAAAACTGATTTT----------TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAA-CCTTC--TTCTTCTTTGGCCAAATGTTCATTCAGAT--GCACGAAG-ATA--CGTGT----------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTT-A-T-TC-AA--GAGGTCGA-TGTTTTC--AA--ATTTTTTCTGATTTTTCTTACATCTA--TGGCA-GGAGAT-
gi|4 : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTAATA---TGTTATAC----CATCCATTAAC-GGTGA-ATGAACTTGTAAAAAAAT--TCGTAT-AAAAT-CGT-AAA--TTCATAATATGT-AT-------GTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTGTATCTACA----T--GTATAT-TG-CAGGG-TCCAAC-AAAT-GTAA----AACGCAA-AAACGTT-G--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAAAC-ACA--AATT--CTCA-C---AAC-ACG--TG-AA-AC--ACTC-ACG-CTAC-
gi|5 : aatcaatcaatcaatttagtcaagcaaAAATT-CATCA-TGGATTGT----TTGTA-TA---TNNNNNNN----NN-NNNNNN-N-NN-NN-NNNNNNNNNNNNNNNN-N--NNNNNN-NNN-N-NNNNAAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA----------T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---TAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAA
gi|6 : -CG-CAGGG-TCCAAC-AAAT-GTAA----AACA----AAACGTT-G--GT-C--T--GTGGGTTC--------A-TTTA----AT--GTGTATGGAAGAAA-A----A--AAC--CT-ATAAG-AAAAC--ACA--AACT--CTCA-C---ACC-ACA--AT-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGAC-ATTTCG--ACATT----TA-CAT--TTC-AAC-------A-TA-CTTTGGCAGTACAAAATTAACCACAACA-T------T-ACGCTACCAATG-AAAATAA-TTA--TCAA-ATA--AAA-TA-CAAATATAAAATCTTACCAG-GACTTCAGTAA-ATAA-ATA
gi|7 : -CG-CAGGG-TCCAAC-AAGTTGCAATAAGAACACAA-AAGCGTT-G--GT-C--TCTG--GGTTCGTAATTCA--TTTA----AT--GTGTATGGAAGAAA-A----A--A-AAACT-ATAAG-AAAA---ACACAAACT--CTCA-C---AAC-ACA--AATAA-AC--ACTC-ACA-CTAC-ATTT-AAACAGAC-ATTTA---------------CAT--TTC-AAC-------A-TA-CATTGGCAGTACAAA--TAA-CACAACA-T------T-ACGCTACCAA-G-AAAATAA-TTA--TCAATATAA-AAA-TA--AAATAT-AAAT
gi|8 : TAAA-AATTTTTA-----ACAATT--CTGTAT-CGGCACG--TCCAAC-AATT-G---------CACAA-AA-CGTT-A--GT-C--TCTG--GGTTCGTA--TATA-TTGA----AT--GTGTA-GGAAGAAA-AAAACA--A-C--CTCCTAAG-AAAAAC-ACA--AACT---TCA-
gi|9 : tgatctttgacacatgttaccattaaaaaaataaaatctcccaaaataggggttA-TTTATATTAT--GTATGTGGACGAAATA----AGGA-T--CT-TTAAG-AAAATGAACA--AAATTCCTCAAC---AACCACAAATA-AACAC--ACTCCACGGCTAC-ATTT-AAACAGA--GTTAAGCAACATTGTTATA-CATTGTTCGAGC-------ATTA-CGTGGGCAATGTGAA--CAA-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AACATCTAGAAATCGCATATTGAATTTGCTTCATATATTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 2222 1 111 1111111 111111 111 1 11 1 11 111 3333333333333 11 11 1111 1111 222 2222 222222222 111111 11 11 11 1 11 111111 22 111 111 111 3333 1 1 222 1 222 2222 11 1 1 111 2222 1 11 1 1 1 11 1 1 222 1 1 11 22 1 44444444444 22 2222 1 111 111 222 1 22222222222222222222222222222222222222222222222222222222222222222222222222 1 11 6666666666666666 11 1 11 11 11 1 11 1 22222 1 11 1 222222 11 1 1 11 222
lowQualScore : 5 0 9 1111 0 777 9999999 999 6 6 0 99 333333 6 000 6 99 0 33 2 0 33 111 8 9999999999999 4 4 00 4 4 3 9999 4 4 66 4 66 22 66 77 5 0000 66 0 5 0000 66 7777 5 5 777 66 66 4 888 5 88888 5 66 5 5 5 5 999 99 1111 6 99 6 777777777 6 3 99 6 0 8 333333 8 22 8 8 11 0 66 8 11 0 3 6 7 0 8 11 8 8 222222 33 6 111 99 3 111 6 666 8888 5 5 111 5 111 4444 88 5 5 999 3333 5 88 5 5 5 77 1 5 5 333 3 3 88 55 3 77777777777 00 1111 3 1 777 666 333 3 22222222222222222222222222222222222222222222222222222222222222222222222222 2 88 8888888888888888 88 3 88 7 7 22 22 0 22 0 7 22222 3 88 6 3 111111 7 88 3 3 88 111
lowQualScore : . . . .... . ... ....... ... . . . .. ...... . ... . .. . .. . . .. ... . ............. . . .. . . . .... . . .. . .. .. .. .. . .... .. . . .... .. .... . . ... .. .. . ... . ..... . .. . . . . ... .. .... . .. . ......... . . .. . . . ...... . .. . . .. . .. . .. . . . . . . .. . . ...... .. . ... .. . ... . ... .... . . ... . ... .... .. . . ... .... . .. . . . .. . . . ... . . .. .. . ........... .. .... . . ... ... ... . .......................................................................... . .. ................ .. . .. . . .. .. . .. . . ..... . .. . . ...... . .. . . .. ...
lowQualScore : 0 0 0 2222 0 555 3333333 333 7 7 2 22 888888 7 333 7 22 0 22 5 0 88 000 0 8888888888888 4 4 00 4 4 6 4444 4 4 11 4 11 22 11 99 0 6666 99 1 0 6666 99 0000 0 0 555 99 11 4 888 0 88888 0 99 0 0 0 7 888 22 0000 7 22 7 555555555 7 2 22 7 8 0 000000 0 22 0 0 00 8 22 0 22 0 2 7 3 6 0 00 0 0 000000 88 5 000 00 2 000 5 777 3333 5 0 000 5 000 0000 00 5 0 000 5555 5 00 5 0 0 55 0 5 0 333 3 3 33 33 3 33333333333 77 7777 3 0 777 777 333 3 33333333333333333333333333333333333333333333333333333333333333333333333333 0 33 7777777777777777 33 3 33 3 3 77 77 3 77 3 3 00000 3 33 7 3 000000 3 33 3 3 00 000
consensus : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA---TTTTACAC----CG-CCATTA-C-GG-GA-ATGAACTTGTAAAAAT-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA-----A----T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---AAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGAC-GTTTAG--ACATTG---TA-CAT--TTC-AAC-------A-TA-CGTTGGCAGTACAAA--TAA-CACAACA-TTTAGAAT-ACGCTACCAATG-AAAATAA-TTA--TCAATATAATAAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAATGAAG-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--CTCTG-A-GCGACCGTGAAGGTAT-A-CAGAAAATCCTCATG-G-GTATTAAAAA-G--CGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCNCAACAAACAGTCTCCATCATGACTGGAACCACATACCGTACTATCGTTACTGATCGCTTGTTACANCACACACACGTCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGCG-AACTGTGACAT-CTATTTATTAT--A--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAANGAATTA-T-CCTAC-C-AAAACAATA---AAAAA-TGATTTT--------CATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTCCAGACTTTTGTT-A-T-TC-AA--GAGGTCGA-TCTTTGC--AAT-TTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGAT-CGTCTATTTCTGCTGTCACC
Reference ( family-543 ) : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA---TTTTACAC----CG-CCATTA-C-GG-GA-ATGAACTTGTAAAAAT-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA-----A----T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---AAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGAC-GTTTAG--ACATTG---TA-CAT--TTC-AAC-------A-TA-CGTTGGCAGTACAAA--TAA-CACAACA-TTTAGAAT-ACGCTACCAATG-AAAATAA-TTA--TCAATATAATAAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAATGAAG-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--CTCTG-A-GCGACCGTGAAGGTAT-A-CAGAAAATCCTCATG-G-GTATTAAAAA-G--CGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCNCAACAAACAGTCTCCATCATGACTGGAACCACATACCGTACTATCGTTACTGATCGCTTGTTACANCACACACACGTCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGCG-AACTGTGACAT-CTATTTATTAT--A--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAANGAATTA-T-CCTAC-C-AAAACAATA---AAAAA-TGATTTT--------CATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTCCAGACTTTTGTT-A-T-TC-AA--GAGGTCGA-TCTTTGC--AAT-TTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGAT-CGTCTATTTCTGCTGTCACC
gi|1 : TCTGGAAATTTCATCAATGGATTGTCTTTTTGTA-TACGTTTTTACACACTGCC-CCATTA-C-GG-GCCATGA--TTGTAAAAAT-TGTTCGTAT-AAA-T-CGT-AAAATTCCATAATATGTTACCATGTAAGTAAATGATGAATATCTGCAACTACATGAAAGACCTTTT-----A----TTCCTATGTGCG-CAGGGGTCCAACCAAAT-GTAA----AACACAAGAAACGT--G--GTGC--T--G--ATTTCGTA--TCAACTTTA----ATACGTGTATGGA-GAAA-A----A--A-C---T-ATAAGGAAAA---ACA--AACT--CTCA-CCTTACC-ACA--TA-AA-ACCAACTC-ACG-CTACCATTTTAAAC-GACAGTTTAG--ACATTT---TAGCAT--TTC-AACTACCACCA-TAACGTTGGCGGTACAA---TA--CACAACA-TTTAGAATTACGTAGCCATTG-AAAATAA-TTAAATCAATATAATAAAATAGCACATAT-AA-TCTTACCAGTGACTCCAGTAG-ATA-TATAAATGAAGCTTTATATCTTATAAGTTCACATTA-GTGTAA--CTCTGTACGCGAC-GTGA-GGTAT-AGCAGAAAAGTCTCATGCGTGTATTAAAAA-GTGCGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTG-GTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCTCAACAAACAGTCTCCATCATGACTGGA--CACATACCGTACTATCGTTACTGATCGCTTGTTACACCAC-CACACGTCGCACACGTAGTCGATTGGCTATGCGCGTGCGCACATA-CAGTCTAAACAGCA-AACTGTAGAAT-CTATTTATTAT------TCGAATTTCA--TCAGAACTATTATTCGCCCTGTTATCTAATAAGGAATTATT-CCTACAC-AAACTAATA---AAAAA-TGATTTTTCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAACCTTTGGTTCTTC---------AT-----CTCAGATGGGCAAGAAGTATACGCGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTTTAGACTTTTGTTGA-TGTCTAATCGAGGTCGAGTCTTTGTCGAAT-TTTGTTTCTGATTTTTCTT-TACCTATTTGGCTGGGAGAT-CGTCTATTTCTGCTGTCACC
gi|10 : aatcaatcatactcaaattcttaattcagcaatcaACT--CT-A-T---AAC-ACA--TT-AA-AC--ACTC-ATG-TTAC-ATTT-AAATAGAC-ATTTAG--ACATCG---CA-CAT--TTA-AAC---------TA-AATTGGCATTACAAA--TAA-TACA--T-TTTAGAAT-ATGCCAACATTGAAAAATAA-TTA--TCAATAGAATAAA-TA-TAAAT
gi|11 : G-GACTCCAGTAATATAATGTAAATGAAG-TTTGTAT--TATA-GTCTA-AT-ATCC-CACTTCTTTG-A-GTGACCATGGAGGTAT-A-CAGAAAAT-CTCATG-G-GTTATAAAAA----------AGTTGCTTTT
gi|12 : TGT-CG-CAGC--TCCAAC-AATT-G-----------CAA-AAACGTT-GTTCT-C--T--G--GGTTCGT
gi|13 : tgatctttgaccacatgaccttaacaatcaaatggggttattcacatcTACCAG-GACTCCAGTAATATAATATAAAGAAAG-TTTATAT--TATA-GTTCA-AT-A-GT-TACA-CT----A-GCGACCGTGAAGGTAT-A-CAGAAAATC
gi|14 : C----TG-TCATTG-CAGG-GA-GTGA--TTGTTAAAGT-C--TTGTAT-AAA-AACGT-AAA--TTCATAATATtc
gi|15 : ACAC----TG-TCATTT-G-GG-GA-AT--ACTTGAAAAAAC-T--TTGTATTAAA-T-CGT-AAA--TTCA
gi|16 : TGT-CG-CAGGG-CCCAAC--AAT-GTAA----AACAC---AAACGTT-G--AT-CTGT--G--GATTCGT
gi|17 : TACCAG-GACTCCAGTAATATAATACAAAGGAAG-TTTATAT--TATA-GTTTA-
gi|2 : ATA-TCTGGAAATT-CATCA-TGGATTGT----TGGTA-TA---TTTAACAC----TG-CCATTA-C-GG-GA-ATGAACTTGTAAAA-T-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAA---A-TGATGAATAT--GAAAC-A-ATGAA-GATTTTTA-----A----T--CTATGT-CC-CAGGGGTCCA-C-AAAT-GTAA----AACACAA-AAACGTTTG--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGAAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---TAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAAGA-ATTTAG--ACATTA---TA-C-T--TTC-AAC-------A-TA-CGT--GCAGTACAAA--TAA-CACAACATTTTAGAAT-ACGCTACCAATG-AAAAAAATTTA--TCAATATAA-AAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGT-ATATAATATAAATGAAA-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--TTCTG-A-GCGACC-TGAAGGTATAA-CAGAAAGTCCTCATG-G-GTATTAAAAATG--CGGCGGAGTTGCTTTTATA-TG-AGTG---AGGTGAGTAC---ATGCAT--A-TTAATT--CA-GTT-TAAAG--GCAACAAACA----TCA-CATGACTGGAACCACAT-CCGTACTATC-TTACT-AT--CTTGTTACAACACACACAC-TCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATAGCAG--TAAACAGCGCAACTGTGACATGCTATTTATTAT--AACATC---TTTCATGTCAGAACTTTTAT--G-CCTGTTATC-AAAAATGAATTA-TGCCTAC-CTAAAACAATA---AAAAA-TGATTTT--------CAT--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAA-TTTTGCACACGG--TCCTCCC--ATTCTGTA-ATT--AAGC-TTTCCAGACTTT--TT-ATT-TC-AA--GA-GTCGA-TCTTTGC--AATCTTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGATACG--TAT---TGCTGTCACC
gi|3 : CGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGC--AACTGTGACAT-CTATTTATTATTAA--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAAAGAATTA-T-CTTAC-C-AAAACAATATATAAAAACTGATTTT----------TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAA-CCTTC--TTCTTCTTTGGCCAAATGTTCATTCAGAT--GCACGAAG-ATA--CGTGT----------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTT-A-T-TC-AA--GAGGTCGA-TGTTTTC--AA--ATTTTTTCTGATTTTTCTTACATCTA--TGGCA-GGAGAT-
gi|4 : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTAATA---TGTTATAC----CATCCATTAAC-GGTGA-ATGAACTTGTAAAAAAAT--TCGTAT-AAAAT-CGT-AAA--TTCATAATATGT-AT-------GTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTGTATCTACA----T--GTATAT-TG-CAGGG-TCCAAC-AAAT-GTAA----AACGCAA-AAACGTT-G--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAAAC-ACA--AATT--CTCA-C---AAC-ACG--TG-AA-AC--ACTC-ACG-CTAC-
gi|5 : aatcaatcaatcaatttagtcaagcaaAAATT-CATCA-TGGATTGT----TTGTA-TA---TNNNNNNN----NN-NNNNNN-N-NN-NN-NNNNNNNNNNNNNNNN-N--NNNNNN-NNN-N-NNNNAAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA----------T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---TAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAA
gi|6 : -CG-CAGGG-TCCAAC-AAAT-GTAA----AACA----AAACGTT-G--GT-C--T--GTGGGTTC--------A-TTTA----AT--GTGTATGGAAGAAA-A----A--AAC--CT-ATAAG-AAAAC--ACA--AACT--CTCA-C---ACC-ACA--AT-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGAC-ATTTCG--ACATT----TA-CAT--TTC-AAC-------A-TA-CTTTGGCAGTACAAAATTAACCACAACA-T------T-ACGCTACCAATG-AAAATAA-TTA--TCAA-ATA--AAA-TA-CAAATATAAAATCTTACCAG-GACTTCAGTAA-ATAA-ATA
gi|7 : -CG-CAGGG-TCCAAC-AAGTTGCAATAAGAACACAA-AAGCGTT-G--GT-C--TCTG--GGTTCGTAATTCA--TTTA----AT--GTGTATGGAAGAAA-A----A--A-AAACT-ATAAG-AAAA---ACACAAACT--CTCA-C---AAC-ACA--AATAA-AC--ACTC-ACA-CTAC-ATTT-AAACAGAC-ATTTA---------------CAT--TTC-AAC-------A-TA-CATTGGCAGTACAAA--TAA-CACAACA-T------T-ACGCTACCAA-G-AAAATAA-TTA--TCAATATAA-AAA-TA--AAATAT-AAAT
gi|8 : TAAA-AATTTTTA-----ACAATT--CTGTAT-CGGCACG--TCCAAC-AATT-G---------CACAA-AA-CGTT-A--GT-C--TCTG--GGTTCGTA--TATA-TTGA----AT--GTGTA-GGAAGAAA-AAAACA--A-C--CTCCTAAG-AAAAAC-ACA--AACT---TCA-
gi|9 : tgatctttgacacatgttaccattaaaaaaataaaatctcccaaaataggggttA-TTTATATTAT--GTATGTGGACGAAATA----AGGA-T--CT-TTAAG-AAAATGAACA--AAATTCCTCAAC---AACCACAAATA-AACAC--ACTCCACGGCTAC-ATTT-AAACAGA--GTTAAGCAACATTGTTATA-CATTGTTCGAGC-------ATTA-CGTGGGCAATGTGAA--CAA-
blockSeqs : G . G . A . CAT CA T . AC AAAT T AA N . . A G . . A . TCTACAT . G GG . T T TAAG . T TT . TG CT TG AT . TATT . T AAAC GG AAA C . TGA CA TC A . C AATA C . C G . . CA CA GTTA . TG G AT . T AT C T TTAGAA . TT A T . AT . T A A . T . . . . ATCC TT T A CA A AA C G TG . . . A . A . . . G . . AC . . . . A A . . . G . GC G AACATC TG G . T TG CT TAT C CATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G . TTTGGCCAAATGTTCA . . . A T NN NN N NN N T ATT . . G . AATC A . . A . .
blockSeqs : . . . . . TG AC . . AC GTC . AT . . . A G . . A . ACAATT . . G . . T . . . . . . CT . . . . . . . . AC . . AC . . . . . AAT . . . . . . AA . G . . . A . T . . . TTAGAA . AT . . . A . C . A . T . . . . AGT A C A CG A A C G . . . . . . . TAAATC T G . A T C . . TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . AT . . . . . . . . . . . AT . . . . AA A . . .
blockSeqs : . . . . . TG G . . AC ACT . T . . . . . . . A . AT . . G . . T . . . . . . . . . . . . . . . C . . AC . . . . . TT . . . . . . CA . A . . . A . T . . . . . AT . . . A . C . A . T . . . . AGT . . A C A A .
blockSeqs : TG C . . NN NNN . T . . . T . . G . . T . . . . . . . . . . . . . . . C . . C . . . . . TA . . . . . . CA . . . . . A . G . . . . . A . . . . . . . T . . . .
blockSeqs : NN N . . . TT . N . . . . G . . T . . . . . . . . . . . . . . . C . . . . . . . . TG . . . . . . G . . . . . . . . . . . .
blockSeqs : . . G . . C . . . . . . . . . . . . . . . C . . . . . . . . TA . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . . . . . . . . AT . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqCons : TG***** AC GCC*** ** AT*********** G* ** *** ** CA* G*** A******** ****** ** A* C* **
originalCons : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA---TTTTACAC----CG-CCATTA-C-GG-GA-ATGAACTTGTAAAAAT-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA-----A----T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---AAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGAC-GTTTAG--ACATTG---TA-CAT--TTC-AAC-------A-TA-CGTTGGCAGTACAAA--TAA-CACAACA-TTTAGAAT-ACGCTACCAATG-AAAATAA-TTA--TCAATATAATAAA-TA-CAAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAATGAAG-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--CTCTG-A-GCGACCGTGAAGGTAT-A-CAGAAAATCCTCATG-G-GTATTAAAAA-G--CGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCNCAACAAACAGTCTCCATCATGACTGGAACCACATACCGTACTATCGTTACTGATCGCTTGTTACANCACACACACGTCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGCG-AACTGTGACAT-CTATTTATTAT--A--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAANGAATTA-T-CCTAC-C-AAAACAATA---AAAAA-TGATTTT--------CATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTCCAGACTTTTGTT-A-T-TC-AA--GAGGTCGA-TCTTTGC--AAT-TTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGAT-CGTCTATTTCTGCTGTCACC
finalCons : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA---TTTTACACTG-----CCATTA-C-GG-GA-ATGAACTTGTAAAAGCC---TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTAAT-----------CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---AAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGACA-TTTAG--ACATTG---TA-CAT--TTC-AACA--------TA-CGTTGGCAGTACAAA--TAA-CACAACA-T------T-ACGCTACCAATG-AAAATAA-TTA--TCAATATAA-AAA-TAC-AAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAATGAAG-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--CTCTG-A-GCGACCGTGAAGGTAT-A-CAGAAAATCCTCATG-G-GTATTAAAAA-G--CGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCNCAACAAACAGTCTCCATCATGACTGGAACCACATACCGTACTATCGTTACTGATCGCTTGTTACANCACACACACGTCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGCG-AACTGTGACAT-CTATTTATTAT--A--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAANGAATTA-T-CCTAC-C-AAAACAATA---AAAAA-TGATTTT--------CATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTCCAGACTTTTGTT-A-T-TC-AA--GAGGTCGA-TCTTTGC--AAT-TTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGAT-CGTCTATTTCTGCTGTCACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AACATCTAGAAATCGCATATTGAATTTGCTTCATATATTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 2222 1 111 333333 111 1 11 1 11 111 3333333333333 11 11 1111 1111 222 2222 222222222 111 1111 333333333333333 11 11 11 1 11 111111 22 111 111 111 3333 1 1 222 1 222 2222 11 1 1 111 2222 1 11 1 1 1 11 1 1 222 1 1 11 22 1 44444444444 22 2222 1 111 111 222 1 22222222222222222222222222222222222222222222222222222222222222222222222222 1 11 6666666666666666 11 1 11 11 11 1 11 1 22222 1 11 1 222222 11 1 1 11 222
lowQualScore : 5 0 9 1111 0 777 99 6 99 999 6 6 0 99 000000 6 000 6 99 0 33 2 0 33 111 8 9999999999999 4 4 00 4 4 3 9999 4 4 66 4 66 22 66 77 5 0000 66 0 5 0000 66 7777 5 5 777 66 66 4 888 5 88888 5 66 5 5 5 5 2 6 99 1111 6 99 6 777777777 6 3 666 99 4444 444444444444444 22 8 8 11 0 0 99 11 0 3 6 7 0 8 11 8 8 222222 33 6 111 99 3 111 6 666 8888 5 5 111 5 111 4444 88 5 5 999 3333 5 88 5 5 5 77 1 5 5 333 3 3 88 55 3 77777777777 00 1111 3 1 777 666 333 3 22222222222222222222222222222222222222222222222222222222222222222222222222 2 88 8888888888888888 88 3 88 7 7 22 22 0 22 0 7 22222 3 88 6 3 111111 7 88 3 3 88 111
lowQualScore : . . . .... . ... .. . .. ... . . . .. ...... . ... . .. . .. . . .. ... . ............. . . .. . . . .... . . .. . .. .. .. .. . .... .. . . .... .. .... . . ... .. .. . ... . ..... . .. . . . . . . .. .... . .. . ......... . . ... .. .... ............... .. . . .. . . .. .. . . . . . . .. . . ...... .. . ... .. . ... . ... .... . . ... . ... .... .. . . ... .... . .. . . . .. . . . ... . . .. .. . ........... .. .... . . ... ... ... . .......................................................................... . .. ................ .. . .. . . .. .. . .. . . ..... . .. . . ...... . .. . . .. ...
lowQualScore : 0 0 0 2222 0 555 22 7 22 333 7 7 2 22 555555 7 333 7 22 0 22 5 0 88 000 0 8888888888888 4 4 00 4 4 6 4444 4 4 11 4 11 22 11 99 0 6666 99 1 0 6666 99 0000 0 0 555 99 11 4 888 0 88888 0 99 0 0 0 7 5 7 22 0000 7 22 7 555555555 7 2 555 88 2222 333333333333333 22 0 0 00 8 8 00 22 0 2 7 3 6 0 00 0 0 000000 88 5 000 00 2 000 5 777 3333 5 0 000 5 000 0000 00 5 0 000 5555 5 00 5 0 0 55 0 5 0 333 3 3 33 33 3 33333333333 77 7777 3 0 777 777 333 3 33333333333333333333333333333333333333333333333333333333333333333333333333 0 33 7777777777777777 33 3 33 3 3 77 77 3 77 3 3 00000 3 33 7 3 000000 3 33 3 3 00 000
consensus : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA---TTTTACAC--TG-CC--ATTA-C-GG-GA-ATGAACTTGTAAAAAT-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA-----A----T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---AAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGACA-TTTAG--ACATTG---TA-CAT--TTC-AAC-------A-TA-CGTTGGCAGTACAAA--TAA-CACA----ACAT-------T-------ACGCTACCAATG-AAAATAA-TTA--TCAATATAAT-AAATA-CAAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAATGAAG-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--CTCTG-A-GCGACCGTGAAGGTAT-A-CAGAAAATCCTCATG-G-GTATTAAAAA-G--CGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCNCAACAAACAGTCTCCATCATGACTGGAACCACATACCGTACTATCGTTACTGATCGCTTGTTACANCACACACACGTCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGCG-AACTGTGACAT-CTATTTATTAT--A--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAANGAATTA-T-CCTAC-C-AAAACAATA---AAAAA-TGATTTT--------CATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTCCAGACTTTTGTT-A-T-TC-AA--GAGGTCGA-TCTTTGC--AAT-TTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGAT-CGTCTATTTCTGCTGTCACC
Reference ( family-543 ) : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTA-TA---TTTTACAC--TG-CC--ATTA-C-GG-GA-ATGAACTTGTAAAAGC-C--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA-----A----T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GGTTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---AAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGACA-TTTAG--ACATTG---TA-CAT--TTC-AAC-------A-TA-CGTTGGCAGTACAAA--TAA-CACA----ACAT-------T-------ACGCTACCAATG-AAAATAA-TTA--TCAATATAA--AAATA-CAAATAT-AAATCTTACCAG-GACTCCAGTAATATAATATAAATGAAG-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--CTCTG-A-GCGACCGTGAAGGTAT-A-CAGAAAATCCTCATG-G-GTATTAAAAA-G--CGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTGAGTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCNCAACAAACAGTCTCCATCATGACTGGAACCACATACCGTACTATCGTTACTGATCGCTTGTTACANCACACACACGTCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGCG-AACTGTGACAT-CTATTTATTAT--A--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAANGAATTA-T-CCTAC-C-AAAACAATA---AAAAA-TGATTTT--------CATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTCCAGACTTTTGTT-A-T-TC-AA--GAGGTCGA-TCTTTGC--AAT-TTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGAT-CGTCTATTTCTGCTGTCACC
gi|1 : TCTGGAAATTTCATCAATGGATTGTCTTTTTGTA-TACGTTTTTACACACTG-CCCCATTA-C-GG-GCCATGA--TTGTAAAAAT-TGTTCGTAT-AAA-T-CGT-AAAATTCCATAATATGTTACCATGTAAGTAAATGATGAATATCTGCAACTACATGAAAGACCTTTT-----A----TTCCTATGTGCG-CAGGGGTCCAACCAAAT-GTAA----AACACAAGAAACGT--G--GTGC--T--G--ATTTCGTA--TCAACTTTA----ATACGTGTATGGA-GAAA-A----A--A-C---T-ATAAGGAAAA---ACA--AACT--CTCA-CCTTACC-ACA--TA-AA-ACCAACTC-ACG-CTACCATTTTAAAC-GACAGTTTAG--ACATTT---TAGCAT--TTC-AACTACCACCA-TAACGTTGGCGGTACAA---TA--CACA----ACAT-------TTAGAATTACGTAGCCATTG-AAAATAA-TTAAATCAATATAATAAAATAGCACATAT-AA-TCTTACCAGTGACTCCAGTAG-ATA-TATAAATGAAGCTTTATATCTTATAAGTTCACATTA-GTGTAA--CTCTGTACGCGAC-GTGA-GGTAT-AGCAGAAAAGTCTCATGCGTGTATTAAAAA-GTGCGGCGGAGTTGCTTTTATATTGCAGTGATCAGGTG-GTACCAAGTGCATTCACTTAATTTCCATGTTCTAAAGTCTCAACAAACAGTCTCCATCATGACTGGA--CACATACCGTACTATCGTTACTGATCGCTTGTTACACCAC-CACACGTCGCACACGTAGTCGATTGGCTATGCGCGTGCGCACATA-CAGTCTAAACAGCA-AACTGTAGAAT-CTATTTATTAT------TCGAATTTCA--TCAGAACTATTATTCGCCCTGTTATCTAATAAGGAATTATT-CCTACAC-AAACTAATA---AAAAA-TGATTTTTCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAACCTTTGGTTCTTC---------AT-----CTCAGATGGGCAAGAAGTATACGCGTGTATATAATTAAATTTTTGCACACGGTCTCCTCCCTGATCCTGTAGATTTCAGGCGTTTTTAGACTTTTGTTGA-TGTCTAATCGAGGTCGAGTCTTTGTCGAAT-TTTGTTTCTGATTTTTCTT-TACCTATTTGGCTGGGAGAT-CGTCTATTTCTGCTGTCACC
gi|10 : aatcaatcatactcaaattcttaattcagcaatcaACT--CT-A-T---AAC-ACA--TT-AA-AC--ACTC-ATG-TTAC-ATTT-AAATAGACA-TTTAG--ACATCG---CA-CAT--TTA-AAC---------TA-AATTGGCATTACAAA--TAA-TACATTTTAGAA-------T-------ATGCCAACATTGAAAAATAA-TTA--TCAATAGAAT-AAATA-TAAAT
gi|11 : G-GACTCCAGTAATATAATGTAAATGAAG-TTTGTAT--TATA-GTCTA-AT-ATCC-CACTTCTTTG-A-GTGACCATGGAGGTAT-A-CAGAAAAT-CTCATG-G-GTTATAAAAA----------AGTTGCTTTT
gi|12 : TGT-CG-CAGC--TCCAAC-AATT-G-----------CAA-AAACGTT-GTTCT-C--T--G--GGTTCGT
gi|13 : tgatctttgaccacatgaccttaacaatcaaatggggttattcacatcTACCAG-GACTCCAGTAATATAATATAAAGAAAG-TTTATAT--TATA-GTTCA-AT-A-GT-TACA-CT----A-GCGACCGTGAAGGTAT-A-CAGAAAATC
gi|14 : C--TG-TC--ATTG-CAGG-GA-GTGA--TTGTTAAAGT-C--TTGTAT-AAA-AACGT-AAA--TTCATAATATtc
gi|15 : ACAC--TG-TC--ATTT-G-GG-GA-AT--ACTTGAAAAAAC-T--TTGTATTAAA-T-CGT-AAA--TTCA
gi|16 : TGT-CG-CAGGG-CCCAAC--AAT-GTAA----AACAC---AAACGTT-G--AT-CTGT--G--GATTCGT
gi|17 : TACCAG-GACTCCAGTAATATAATACAAAGGAAG-TTTATAT--TATA-GTTTA-
gi|2 : ATA-TCTGGAAATT-CATCA-TGGATTGT----TGGTA-TA---TTTAACAC--TG-CC--ATTA-C-GG-GA-ATGAACTTGTAAAA-T-T--TCGTAT-AAA-T-CGT-AAA--TTCATAATATGT-AC-ATGTAA---A-TGATGAATAT--GAAAC-A-ATGAA-GATTTTTA-----A----T--CTATGT-CC-CAGGGGTCCA-C-AAAT-GTAA----AACACAA-AAACGTTTG--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGAAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---TAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAAGAA-TTTAG--ACATTA---TA-C-T--TTC-AAC-------A-TA-CGT--GCAGTACAAA--TAA-CACA----ACATTTTAGAAT-------ACGCTACCAATG-AAAAAAATTTA--TCAATATAA--AAATA-CAAATAT-AAATCTTACCAG-GACTCCAGT-ATATAATATAAATGAAA-TTTATAT--TATA-GTTTA-AT-A-GT-TAC--TTCTG-A-GCGACC-TGAAGGTATAA-CAGAAAGTCCTCATG-G-GTATTAAAAATG--CGGCGGAGTTGCTTTTATA-TG-AGTG---AGGTGAGTAC---ATGCAT--A-TTAATT--CA-GTT-TAAAG--GCAACAAACA----TCA-CATGACTGGAACCACAT-CCGTACTATC-TTACT-AT--CTTGTTACAACACACACAC-TCGCACACGTAGTCGATTGGCTATGCGCGC---CA-ATAGCAG--TAAACAGCGCAACTGTGACATGCTATTTATTAT--AACATC---TTTCATGTCAGAACTTTTAT--G-CCTGTTATC-AAAAATGAATTA-TGCCTAC-CTAAAACAATA---AAAAA-TGATTTT--------CAT--TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCCTTC--TTCTTC---------AT-----TTCAGAT--GCAAGAAG-ATA--CGTGTATATAATTAAA-TTTTGCACACGG--TCCTCCC--ATTCTGTA-ATT--AAGC-TTTCCAGACTTT--TT-ATT-TC-AA--GA-GTCGA-TCTTTGC--AATCTTTTTTTCTGATTTTTCTTACATCTA--TGGCT-GGAGATACG--TAT---TGCTGTCACC
gi|3 : CGTAGTCGATTGGCTATGCGCGC---CA-ATA-CAG--TAAACAGC--AACTGTGACAT-CTATTTATTATTAA--ATC---TTTCAT-TCAGAACTTTTAT--G-CCTGTTATC-AATAAAGAATTA-T-CTTAC-C-AAAACAATATATAAAAACTGATTTT----------TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAA-CCTTC--TTCTTCTTTGGCCAAATGTTCATTCAGAT--GCACGAAG-ATA--CGTGT----------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTT-A-T-TC-AA--GAGGTCGA-TGTTTTC--AA--ATTTTTTCTGATTTTTCTTACATCTA--TGGCA-GGAGAT-
gi|4 : ATAGTCTGGAAATT-CATCAGTGGATTGT----TTGTAATA---TGTTATAC--CATCC--ATTAAC-GGTGA-ATGAACTTGTAAAAAAAT--TCGTAT-AAAAT-CGT-AAA--TTCATAATATGT-AT-------GTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTGTATCTACA----T--GTATAT-TG-CAGGG-TCCAAC-AAAT-GTAA----AACGCAA-AAACGTT-G--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAAAC-ACA--AATT--CTCA-C---AAC-ACG--TG-AA-AC--ACTC-ACG-CTAC-
gi|5 : aatcaatcaatcaatttagtcaagcaaAAATT-CATCA-TGGATTGT----TTGTA-TA---TNNNNNNN--NN-NN--NNNN-N-NN-NN-NNNNNNNNNNNNNNNN-N--NNNNNN-NNN-N-NNNNAAA--TTCATAATATGT-AC-ATGTAAGTAA-TGATGAATAT--GAAAC-A-ATGAA-GACTTTTA----------T--CTATGT-CG-CAGGG-TCCAAC-AAAT-GTAA----AACACAA-AAACGTT-G--GT-C--T--G--GATTCGTA--TCAA-TTTA----AT--GTGTATGGAAGAAA-A----A--A-C--CT-ATAAG-AAAA---ACA--AACT--CTCA-C---TAC-ACA--TA-AA-AC--ACTC-ACG-CTAC-ATTT-AAA
gi|6 : -CG-CAGGG-TCCAAC-AAAT-GTAA----AACA----AAACGTT-G--GT-C--T--GTGGGTTC--------A-TTTA----AT--GTGTATGGAAGAAA-A----A--AAC--CT-ATAAG-AAAAC--ACA--AACT--CTCA-C---ACC-ACA--AT-AA-AC--ACTC-ACG-CTAC-ATTT-AAACAGACA-TTTCG--ACATT----TA-CAT--TTC-AAC-------A-TA-CTTTGGCAGTACAAAATTAACCACA----ACAT-------T-------ACGCTACCAATG-AAAATAA-TTA--TCAA-AT-A--AAATA-CAAATATAAAATCTTACCAG-GACTTCAGTAA-ATAA-ATA
gi|7 : -CG-CAGGG-TCCAAC-AAGTTGCAATAAGAACACAA-AAGCGTT-G--GT-C--TCTG--GGTTCGTAATTCA--TTTA----AT--GTGTATGGAAGAAA-A----A--A-AAACT-ATAAG-AAAA---ACACAAACT--CTCA-C---AAC-ACA--AATAA-AC--ACTC-ACA-CTAC-ATTT-AAACAGACA-TTTA---------------CAT--TTC-AAC-------A-TA-CATTGGCAGTACAAA--TAA-CACA----ACAT-------T-------ACGCTACCAA-G-AAAATAA-TTA--TCAATATAA--AAATA--AAATAT-AAAT
gi|8 : TAAA-AATTTTTA-----ACAATT--CTGTAT-CGGCACG--TCCAAC-AATT-G---------CACAA-AA-CGTT-A--GT-C--TCTG--GGTTCGTA--TATA-TTGA----AT--GTGTA-GGAAGAAA-AAAACA--A-C--CTCCTAAG-AAAAAC-ACA--AACT---TCA-
gi|9 : tgatctttgacacatgttaccattaaaaaaataaaatctcccaaaataggggttA-TTTATATTAT--GTATGTGGACGAAATA----AGGA-T--CT-TTAAG-AAAATGAACA--AAATTCCTCAAC---AACCACAAATA-AACAC--ACTCCACGGCTAC-ATTT-AAACAGA-G-TTAAGCAACATTGTTATA-CATTGTTCGAGC-------ATTA-CGTGGGCAATGTGA--------ACA----AAAT-------T-------AC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AACATCTAGAAATCGCATATTGAATTTGCTTCATATATTT