lowQualScore : 111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 1 11 1 333333 1 11 11 1 11 7777777777777 1 11 11 11 1 1 1 333333333 11 1 1 2222 33333 1 222 11 2 2 2 2 333 6666666 2 2 33333 111111111111111 4 444444444444 4444444444444444444444444444444444444444444444444444444444444444444444 555555555555555555555555 4 1 33 1 111 111 111 3333333333
lowQualScore : 3 88 3 222222 3 7 88 88 3 99 3333333333333 3 1 88 88 88 3 3 3 8 777777777 1 88 3 3 8888 00000 6 3 333 99 0 0 0 3 0 111 6 9999999 2 4 0 2 2 3 0 4 55555 333333333333333 0 666666666666 6 3333333333333333333333333333333333333333333333333333333333333333333333 6 888888888888888888888888 0 5 2 55 3 66 4 2 2 0 222 000 5 77 55 1 999 999 5 5 666 77 0000000000 2 6 6
lowQualScore : . .. . ...... . . .. .. . .. ............. . . .. .. .. . . . . ......... . .. . . .... ..... . . ... .. . . . . . ... . ....... . . . . . . . . ..... ............... . ............ . ...................................................................... . ........................ . . . .. . .. . . . . ... ... . .. .. . ... ... . . ... .. .......... . . .
lowQualScore : 3 33 3 777777 3 3 33 33 3 33 3333333333333 3 0 33 33 33 3 3 3 3 000000000 0 33 3 3 3333 77777 7 3 333 00 0 0 0 0 0 555 0 0000000 5 0 0 5 5 0 0 0 00000 000000000000000 0 000000000000 0 0000000000000000000000000000000000000000000000000000000000000000000000 0 000000000000000000000000 0 0 5 55 0 55 0 5 5 8 666 000 7 00 99 7 333 666 7 7 000 99 7777777777 2 7 7
consensus : GTTAGA-TCATTGTTA--ATCGAGG-TTATACA--T---GA-ATTTAACGTTCAC--TCTCTAAGTCT--TGGT-TATC-CCTG-------------GTT-GTTCGCTG--TTGAG--AATTTTA--CATCGC-AC-TCATT-TCAAACATCT---CC----AACTCCA--GATTCCAGAT-AACGTAATATA-CAAC----TTAGG--TC-TCTCCTCTT-TGACAA---TATAATTCTGTCNAAATAGCAATGCCAGCAACNATATCCNGCCCAACTATNTGGGAAGNAAAGCATGAGAAANATCAATTGATATTCTNATNATTTGNTCCAATNTTAATTTAGATTTG---GAATTTA----GCTTTCCAAAATTAGCATCCTTATATATAGATC-GAAGAAAGA------AGTGCGGTTTAAACATAAAAATCATCATAAATTTCGCAGAAGTTTAGATTTAACACAAATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTACTTTNTACAACCNATNNCTTGTGTNANACAAGAGGCCCATG--GGCC---A-CATCGCTCA-CTCGAG-C-AGC--A-GT-T-C-CT--AGC----------AATAA-GC-AAGCTT
Reference ( gi|2 ) : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCT--TGGT-TATT-CCTG-------------GTT-GTTCACTG--TTGAG--AATTTTA--CATCGC-AC-TCATT-TCAAACTTCT---CC----AACTTCA--GATTCCAGAT-AATGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATG-CAG-AACAA-ATCCA--CCAGCTATTTTT--AACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAAT-CAATTTTAATTTAAATTTGTACAAATTTAATTTACTTTCCAAAATT-GCATCCTTTTCTTTGAATCTGAAAAAAGATATGATAATG-GGTTTGAAT-TAAAAATCATTATGATTAT----GAAGACTA-AGTTACCAC-GATAA-ATGTCCGATATATGATGC-ACC--------TCATATACT---GTAAA-TAATTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCGATT--GGCC---A-CATCACTCA-CTTAAA-G-AGT--A-GT-T-C-CT--AGC----------AATGA-GC-AAGCTT
gi|1 : GTTAGACTCATTGTTATGCTCAAGAATTACACACAT---GAGATTTA-CATTCACAATCTCTAAGTGTTATGGTGTATCGCATG-------------GTTAGTTCGCTGTTTTGAGGAAATTGTATCCATCGCGACTTCATTATCAAACATCTGGGTCTCAAAACTCCAGCGAATCCAGATAAACGTAATATAGCAACCAGGTTAGGAATCATCT-CTCTTATGACAAAGGGACTATTCTGT-AAAATAGCAATGCCAGCAACCATATCCAGCCCAACTATATGGGAAGAAAAACATGAGAAAAATCAATTGATATTTTGATGATTTGCTCCAATATTAAT-----TTTG---GAATTTA----GCTTTCCAAAATTAGCATCCTTATATATAGATC-GAAGAAAGA------AGTGCGGTTTAAACATAAAAATCATCATAAATTTCGCAGAAGTTTAGATTTAACACAAATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTACTTTCTAC--CCTATACCTTGTGTTAGACAA-AGGCCGATTGGGGCC---AGCGATACTC--CTTAAA-GCAGTAAA-GT-TCC-CT--AGC----------AATGA-GCGAAGCTT
gi|8 : tttcatgtgaaacattttcatGTTAGA-TCATTGTTA--ATCAAGG-TTATACA--TAATGA-ATTTAACATTCAC--TCTCTAAGTCT--TGGT-TATC-CCTG-------------GTT-GTTCGCTG--TTGAG--AATTTTA--CATCGC-AC-TCATT-TCAAACTTCT---CC----AACATCA--GATTCCAGAT-AATGTAATATA-CAAC----TTGGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTgagca
gi|3 : ttatgttaaaataatTAGA-TCATTGCTA--ATCGAGG-TTATACA--T---GA-ATTTAACGTTCAC--TCTCTAAGTCT--TGGT-TATC-CCTGGTTGTTATCCCTGGTT-GTTCACTG--TTGAA--AATTTTA--CATCGC-AC-TCATT-TCAAACATCT---CC----AACTCCA--GGTTCCAGAC-AATGTAATAGA-CAAC----TTAGA------CTCCTTTA-TGACAA---TATAATTCTGTCTAAAT-GCAATG-CAA-AACAA-ATCCT--CCAACTA-TTGA--AACAAAGCATGAGAAATATCAATT-ATATTCTCATTATTTAAT-CAATTTTAATTTAGATT
gi|5 : atttcatgtgaaattttatgttagatgatccTTTATACAACCGATTACTTGTGTAATACATGAGGCCCATT--GGCCTAAA-TATC-TTCGCCTCAGATG-AGC--ACGTGT-T-CT--AGCA---------AATAACAC-AAGCTTatacttttaact
gi|16 : CAAGAGGTCCATG--GGCT---A-CAGTGCTCA-CTTGAG-C-AGT--A-GT-T-CGCTTGAGC----------AATcaatataaaagcttaccactaattagccatcttggttcaggaaatacttttgcaaaggtagatgtcagactaaatttcattaattataaaataattactaactttaacttaaaaaccattaattcacataatttaccaattgtagagggtatgttttca
gi|4 : atagAAGAGGTTCATG--GGCC---A-CATGGCTCA-CATGAG-C-AGC--A-GT-T-C-GT--AGC----------AATAA-AC-tca
gi|6 : AGGCCCATT--GGCC---A-CATCACTCA-CTCGAG-C-AGC--A-GT-T-C-CT--AGC----------A---A-GC-AAtatgcttgataaaaattaccattataaaagcagcttatagttcagaaaaaaaacttttttcaaagataacgactacaagtcattatactatcaaacttaaattattgaatttgactaaaaattcagtaattatcgcatgtccttgttgaggggcatgtccttatatattaaaaaaaattatttaaggtaaatttgcgcaaagttcgattccttatacattcgcaggtaaaaatttgatccc
gi|10 : GCCCGTG--GGCC---A-CATCGCTCA-CCTGAA-C-AGC--A-GT-T-C-CT--AGC----------GATAA-AC-AAaattatcactctacaagcagcttgattcagagaaaggattgaacattcatcattatatacataactaaaaattcatagattatcatattcctttgtaaaggggtacatggccatttattttaaccaatttcatttaatgatgctttgtgcaaagtttggttccctatacatt
gi|14 : ATG--GACC---A-CATTGCTCA-CCTGAG-C-AAC--A-GT-T-T-CT--AGCCATAAACAAGAATGA-GC-AAatgttcacgagcaaaaccttcattgtaagaacattttgatttaaaaaaaaacctcaaaggcaacaactataaaaccgtgtatgtgtaagatctctcccttgttaagcatttt
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): CAAATGACACAAAGATAGACCACATTACTTATCTAACAACAGAGTAGTAATTATTATCATTAAGCTTGCATGAGCATTATCATCAGCTTGGTTCAGATTTTTTTTCAAAGATAACGACTAAAAATGTATTAATTATCAAACTTTATTAAATCAAATTTTACCAAAAAGTCATTAATTATCATATGCTCTTGTAGAGGGGTATG
Unaligned ( gi|9 ): GAATACCACAGCAGTCCATGGGCCAAATCGCTCACCTGAGCAGCAGTTTCTGCAATAAACAGCTTGAATAAACAATTCATTATACAAGCAATGATCAGAAAAAGTATTTCAAAAATTCATAAATTCATCATAAAACTAGATCATTGATAAATATTCATATGCC
Unaligned ( gi|11 ): ACAAGCTTGAATAAAACTATCATTATACAAGCAACTTGATTCAGAAAAAGATTTTCAAAAATTCATAAATTCAATCATCAAACTAGATCATTGATAAATATTCATATGCCCTTTCACTTTAACAAATCTCATCTGAGGATGCTTTATGCAAA
Unaligned ( gi|12 ): GAACAGCACTTCCTAGCAATAAAAAGCTTGAGCAAAACTTTCATTATACTAGCAATTAGATTCAGAAAAAAAATTCAAAGGAATTCATTATGTATATGTA
Unaligned ( gi|13 ): TGACTAAAATTCATAGACTGTCATATTCCTTTTATAAAGGGTACATGCCCATTTTTTCACAAATTTCATTTAAGGATGCTTTGTGGACAAGTTTG
Unaligned ( gi|15 ): TAAAAAATGTTCAAAAGAAACATTTTAAAACTTCACTTTCAGATATCATCATCATATTCCTTT
Unaligned ( gi|17 ): ACTTTAATGAATTTCATCTAGGGATGCTTTGTGCCAGGTTTGGTTTTCTATACATTT
Unaligned ( gi|18 ): TCAAAAATGTTCAAAACAAATATTTTAAAACTTCACTTTC
Alignments
lowQualScore : 1 11 1 222222 1 11 11 1 5555555555555 1 1 11 11 11 1 1 1 22222 11 11 11 1 2222 444444 1 111 2 22 2 333 22222 2 2 11 333 4444 1 2 555555 1 1 2222 1 1 1 1 33333333 222 1 2
lowQualScore : 0 33 2 0 222222 0 3 2 33 33 0 5555555555555 0 0 33 33 33 0 0 0 4 55555 33 33 22 0 1111 333333 2 0 777 77 3 6 11 1 3 111 88888 11 0 1 3 0 1 1 11 3 1 11 555 2222 5 4 3 4 0 777777 5 5 4 4 3333 4 5 3 3 5 5 5 55555555 111 5 2 1 3 1 22 1 1 66 888 5 2 5 77 66 4 4 4 4 66 4 6666
lowQualScore : . .. . . ...... . . . .. .. . ............. . . .. .. .. . . . . ..... .. .. .. . .... ...... . . ... .. . . .. . . ... ..... .. . . . . . . .. . . .. ... .... . . . . . ...... . . . . .... . . . . . . . ........ ... . . . . . .. . . .. ... . . . .. .. . . . . .. . ....
lowQualScore : 0 88 0 0 222222 0 2 0 88 88 0 0000000000000 0 0 88 88 88 0 0 0 0 00000 88 88 00 0 2222 222222 5 0 555 77 7 7 77 0 7 000 33333 77 7 0 3 7 0 0 77 3 0 00 000 5555 5 0 0 0 0 555555 0 5 0 0 0000 0 0 0 0 5 5 5 00000000 000 0 5 0 7 0 00 0 0 99 888 0 2 0 66 11 4 4 4 4 11 4 2222
consensus : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCC-TCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGCCAG-AACAA-ATCCA--CCAACTATTT--GAAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAAT-CAATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTAC-ACCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CATCGCTCA-CTC-GAGCAGC--A-GT-T-C-CT--AGC-AATAA-AC-AAGCTT
Reference ( family-5400 ) : GTTAGA-TCATTGTTA--ATCGAGG-TTATACA--T---GA-ATTTAACGTTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACATCT-----CCAA--CTCCAG--ATTCCAGATAA-CGTAATATA-CAAC----TTAGG--T-C-TCTCCTCTT-TGACAA---TATAATTCTGTCNAAATAGCAATGCCAGCAACNATATCCNGCCCAACTATNTGGGAAGNAAAGCATGAGAAANATCAATTGATATTCTNATNATTTGNTCCAATNTTAATTTAGATTTG---GAATTTA----GCTTTCCAAAATTAGCATCCTTATATATAGATC-GAAGAAAGA------AGTGCGGTTTAAACATAAAAATCATCATAAATTTCGCAGAAGTTTAGATTTAACACAAATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTACTTTNTACAACCNATNNCTTGTGTNANACAAGAGGCCCAT--GGGCC---A-CATCGCTCA-CTC-GAGCAGC--A-GT-T-C-CT--AGC-AATAA-GC-AAGCTT
gi|1 : GTTAGACTCATTGTTATGCTCAAGAATTACACACAT---GAGATTTA-CATTCACAATCTCTAAGTGTTATGGTGTA-------------TCGCATGGTTAGTTCGCTGTTTTGAGGAAATTGTATCCATCGCGACTTCATTATCAAACATCTGGGTCTCAAAACTCCAGCGAATCCAGATAAACGTAATATAGCAACCAGGTTAGGAAT-CATCTC-TCTTATGACAAAGGGACTATTCTGT-AAAATAGCAATGCCAGCAACCATATCCAGCCCAACTATATGGGAAGAAAAACATGAGAAAAATCAATTGATATTTTGATGATTTGCTCCAATATTAATTT-----TG---GAATTTA----GCTTTCCAAAATTAGCATCCTTATATATAGATC-GAAGAAAGA------AGTGCGGTTTAAACATAAAAATCATCATAAATTTCGCAGAAGTTTAGATTTAACACAAATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTACTTTCTAC--CCTATACCTTGTGTTAGACAA-AGGCCGATTGGGGCC---AGCGATACTCC-TTA-AAGCAGTAAA-GT-TCC-CT--AGC-AATGA-GCGAAGCTT
gi|10 : tttcatgtgaaacattttcatGCCCGT--GGGCC---A-CATCGCTCA-CCT-GAACAGC--A-GT-T-C-CT--AGC-GATAA-AC-AAgagca
gi|12 : -GAACAGC--A-CT-T-C-CT--AGC-AATAA-A--AAGCTTatgttcacgagcaaaaccttcattgtaagaacattttgatttaaaaaaaaacctcaaaggcaacaactataaaaccgtgtatgtgtaagatctctcccttgttaagcatttt
gi|16 : CAAGAGGTCCAT--GGGCT---A-CAGTGCTCA-CTT-GAGCAGT--A-GT-T-CGCTTGAGC-AATgagcaaaactttcattatactagcaattagattcagaaaaaaaattcaaaggaattcattatgtatatgta
gi|2 : atagGTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TTCC-TGGTT-GTTCACTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACTTCT-----CCAA--CTTCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCC-TCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATG-CAG-AACAA-ATCCA--CCAGCTATTTTT--AACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAAT-CAATTTTAATTTAAATTTGTACAAATTTAATTTACTTTCCAAAATT-GCATCCTTTTCTTTGAATCTGAAAAAAGATATGATAATG-GGTTTGAAT-TAAAAATCATTATGATTAT----GAAGACTA-AGTTACCAC-GATAA-ATGTCCGATATATGATGC-ACC--------TCATATACT---GTAAA-TAATTTCTAC-ACCTATACCTTGTGTAAGACAAGAGGCCGAT--TGGCC---A-CATCACTCA-CTT-AAAGAGT--A-GT-T-C-CT--AGC-AATGA-GC-AAGCTTtca
gi|3 : TAGA-TCATTGCTA--ATCGAGG-TTATACA--T---GA-ATTTAACGTTCAC--TCTCTAAGTCTT--GGT-TATCCCTGGTTGTTATCCC-TGGTT-GTTCACTGTT--GAA--AATTTTA--CATCGC-ACT-CATT-TCAAACATCT-----CCAA--CTCCAG--GTTCCAGACAA-TGTAATAGA-CAAC----TTAGA-------CTCCTTTA-TGACAA---TATAATTCTGTCTAAAT-GCAATGCAA--AACAA-ATCCT--CCAACTATT---GAAACAAAGCATGAGAAATATCAATT-ATATTCTCATTATTTAAT-CAATTTTAATTTAGATT
gi|4 : atttcatgtgaaattttatgttagatgatccAAGAGGTTCAT--GGGCC---A-CATGGCTCA-CAT-GAGCAGC--A-GT-T-C-GT--AGC-AATAA-AC-atacttttaact
gi|5 : TTTATACAACCGATTACTTGTGTAATACATGAGGCCCAT--TGGCCTAAA-TATC-TTCGCCTCAGATGAGC--ACGTGT-T-CT--AGCAAATAACAC-AAGCTTtatgcttgataaaaattaccattataaaagcagcttatagttcagaaaaaaaacttttttcaaagataacgactacaagtcattatactatcaaacttaaattattgaatttgactaaaaattcagtaattatcgcatgtccttgttgaggggcatgtccttatatattaaaaaaaattatttaaggtaaatttgcgcaaagttcgattccttatacattcgcaggtaaaaatttgatccc
gi|6 : AGGCCCAT--TGGCC---A-CATCACTCA-CTC-GAGCAGC--A-GT-T-C-CT--AGC----AA-GC-AAcaatataaaagcttaccactaattagccatcttggttcaggaaatacttttgcaaaggtagatgtcagactaaatttcattaattataaaataattactaactttaacttaaaaaccattaattcacataatttaccaattgtagagggtatgttttca
gi|8 : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--TAATGA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACTTCT-----CCAA--CATCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTGGG--TCC-TCTCCTCTT-TGACAA---TATAATTCTGTaattatcactctacaagcagcttgattcagagaaaggattgaacattcatcattatatacataactaaaaattcatagattatcatattcctttgtaaaggggtacatggccatttattttaaccaatttcatttaatgatgctttgtgcaaagtttggttccctatacatt
gi|9 : ttatgttaaaataatGTCCAT--GGGCC---A-AATCGCTCA-CCT-GAGCAGC--A-GT-T-T-CT---GC-AATAA-AC--AGCTT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CAAATGACACAAAGATAGACCACATTACTTATCTAACAACAGAGTAGTAATTATTATCATTAAGCTTGCATGAGCATTATCATCAGCTTGGTTCAGATTTTTTTTCAAAGATAACGACTAAAAATGTATTAATTATCAAACTTTATTAAATCAAATTTTACCAAAAAGTCATTAATTATCATATGCTCTTGTAGAGGGGTATG
Unaligned ( gi|11 ): ACAAGCTTGAATAAAACTATCATTATACAAGCAACTTGATTCAGAAAAAGATTTTCAAAAATTCATAAATTCAATCATCAAACTAGATCATTGATAAATATTCATATGCCCTTTCACTTTAACAAATCTCATCTGAGGATGCTTTATGCAAA
Unaligned ( gi|13 ): TGACTAAAATTCATAGACTGTCATATTCCTTTTATAAAGGGTACATGCCCATTTTTTCACAAATTTCATTTAAGGATGCTTTGTGGACAAGTTTG
Unaligned ( gi|14 ): GAATGACACAGAAATGGACCACATTGCTCACCTGAGCAACAGTTTCTAGCCATAAACAAGAATGAGCAAAACTATCATTATAAA
Unaligned ( gi|15 ): TAAAAAATGTTCAAAAGAAACATTTTAAAACTTCACTTTCAGATATCATCATCATATTCCTTT
Unaligned ( gi|17 ): ACTTTAATGAATTTCATCTAGGGATGCTTTGTGCCAGGTTTGGTTTTCTATACATTT
Unaligned ( gi|18 ): TCAAAAATGTTCAAAACAAATATTTTAAAACTTCACTTTC
Alignments
lowQualScore : 1 11 1 222222 1 11 11 1 5555555555555 1 1 11 11 11 1 1 1 22222 11 11 1 1 2222 111 1 111 1 2 1 1 11 11 1 1 11 222 2222 1 1 333333 1 1 2222 1 1 1 1 33333333 222 1 22
lowQualScore : 0 33 0 222222 0 3 33 33 0 5555555555555 0 0 33 33 33 0 0 0 1 55555 33 33 0 0 1111 777 2 2 0 777 6 3 3 3 3 88 7 88 3 3 11 111 4444 5 1 1 1 5 000000 5 5 1 1 3333 1 5 1 1 5 5 5 55555555 111 5 1 00 66 777 4 0 4 77 55 4 4 4 4 55 4 5 5
lowQualScore : . .. . ...... . . .. .. . ............. . . .. .. .. . . . . ..... .. .. . . .... ... . . . ... . . . . . .. . .. . . .. ... .... . . . . . ...... . . . . .... . . . . . . . ........ ... . . .. .. ... . . . .. .. . . . . .. . . .
lowQualScore : 0 88 0 222222 0 2 88 88 0 0000000000000 0 0 88 88 88 0 0 0 0 00000 88 88 0 0 2222 000 5 5 0 555 7 3 3 3 3 33 3 33 3 3 00 000 5555 5 0 0 0 5 000000 0 5 0 0 0000 0 0 0 0 5 5 5 00000000 000 0 0 77 11 888 4 9 4 44 55 0 0 0 0 55 0 0 0
consensus : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATG-CAG-AACAA-ATCCA--CCAACTATTTG--AAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CATCGCTCA-CTT-GAGCAGC--A-GT-T-C-CT--AGC-AATAA-AC-AAGCTT
Reference ( family-5400 ) : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGCCAG-AACAA-ATCCA--CCAACTATTTG--AAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CATCGCTCA-CTC-GAGCAGC--A-GT-T-C-CT--AGC-AATAA-AC-AAGCTT
gi|1 : GTTAGACTCATTGTTATGCTCAAGAATTACACACAT---GAGATTTA-CATTCACAATCTCTAAGTGTTATGGTGTA-------------TCGCATGGTTAGTTCGCTGTTTTGAGGAAATTGTATCCATCGCGACTTCATTATCAAACATCTGGGTCTCAAAACTCCAGCGAATCCAGATAAACGTAATATAGCAACCAGGTTAGGAATCATCTC-TCTTATGACAAAGGGACTATTCTGT-AAAATAGCAATGCCAGCAACCATATCCAGCCCAACTATATGGGAAGAAAAACATGAGAAAAATCAATTGATATTTTGATGATTTGCTCCAATATTAATTT-----TG---GAATTTA----GCTTTCCAAAATTAGCATCCTTATATATAGATC-GAAGAAAGA------AGTGCGGTTTAAACATAAAAATCATCATAAATTTCGCAGAAGTTTAGATTTAACACAAATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTACTTTCTAC--CCTATACCTTGTGTTAGACAA-AGGCCGATTGGGGCC---AGCGATACTCC-TTA-AAGCAGTAAA-GT-TCC-CT--AGC-AATGA-GCGAAGCTT
gi|10 : tttcatgtgaaacattttcatGCCCGT--GGGCC---A-CATCGCTCA-CCT-GAACAGC--A-GT-T-C-CT--AGC-GATAA-AC-AAgagca
gi|12 : -GAACAGC--A-CT-T-C-CT--AGC-AATAA-A--AAGCTTatgttcacgagcaaaaccttcattgtaagaacattttgatttaaaaaaaaacctcaaaggcaacaactataaaaccgtgtatgtgtaagatctctcccttgttaagcatttt
gi|14 : AT--GGACC---A-CATTGCTCA-CCT-GAGCAAC--A-GT-T-T-CT--AGC-CATAA-AC-AAGgagcaaaactttcattatactagcaattagattcagaaaaaaaattcaaaggaattcattatgtatatgta
gi|16 : gaatgacacagaaCAAGAGGTCCAT--GGGCT---A-CAGTGCTCA-CTT-GAGCAGT--A-GT-T-CGCTTGAGC-AATaatgagcaaaactatcattataaa
gi|2 : atagGTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TTCC-TGGTT-GTTCACTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACTTCT-----CCAA--CTTCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATG-CAG-AACAA-ATCCA--CCAGCTATTTT--TAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAAATTTGTACAAATTTAATTTACTTTCCAAAATT-GCATCCTTTTCTTTGAATCTGAAAAAAGATATGATAATG-GGTTTGAAT-TAAAAATCATTATGATTAT----GAAGACTA-AGTTACCAC-GATAA-ATGTCCGATATATGATGC-ACC--------TCATATACT---GTAAA-TAATTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCGAT--TGGCC---A-CATCACTCA-CTT-AAAGAGT--A-GT-T-C-CT--AGC-AATGA-GC-AAGCTTtca
gi|3 : TAGA-TCATTGCTA--ATCGAGG-TTATACA--T---GA-ATTTAACGTTCAC--TCTCTAAGTCTT--GGT-TATCCCTGGTTGTTATCCC-TGGTT-GTTCACTGTT--GAA--AATTTTA--CATCGC-ACT-CATT-TCAAACATCT-----CCAA--CTCCAG--GTTCCAGACAA-TGTAATAGA-CAAC----TTAGA------CTCCTTTA-TGACAA---TATAATTCTGTCTAAAT-GCAATG-CAA-AACAA-ATCCT--CCAACTA-TTG--AAACAAAGCATGAGAAATATCAATT-ATATTCTCATTATTTAATC-AATTTTAATTTAGATT
gi|4 : atttcatgtgaaattttatgttagatgatccAAGAGGTTCAT--GGGCC---A-CATGGCTCA-CAT-GAGCAGC--A-GT-T-C-GT--AGC-AATAA-AC-atacttttaact
gi|5 : TTTATACAACCGATTACTTGTGTAATACATGAGGCCCAT--TGGCCTAAA-TATC-TTCGCCTCAGATGAGC--ACGTGT-T-CT--AGCAAATAACAC-AAGCTTtatgcttgataaaaattaccattataaaagcagcttatagttcagaaaaaaaacttttttcaaagataacgactacaagtcattatactatcaaacttaaattattgaatttgactaaaaattcagtaattatcgcatgtccttgttgaggggcatgtccttatatattaaaaaaaattatttaaggtaaatttgcgcaaagttcgattccttatacattcgcaggtaaaaatttgatccc
gi|6 : AGGCCCAT--TGGCC---A-CATCACTCA-CTC-GAGCAGC--A-GT-T-C-CT--AGC-AAcaatataaaagcttaccactaattagccatcttggttcaggaaatacttttgcaaaggtagatgtcagactaaatttcattaattataaaataattactaactttaacttaaaaaccattaattcacataatttaccaattgtagagggtatgttttca
gi|8 : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--TAATGA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACTTCT-----CCAA--CATCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTGGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTgcaaaattatcactctacaagcagcttgattcagagaaaggattgaacattcatcattatatacataactaaaaattcatagattatcatattcctttgtaaaggggtacatggccatttattttaaccaatttcatttaatgatgctttgtgcaaagtttggttccctatacatt
gi|9 : ttatgttaaaataatGTCCAT--GGGCC---A-AATCGCTCA-CCT-GAGCAGC--A-GT-T-T-CT---GC-AATAA-AC--AGCTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CAAATGACACAAAGATAGACCACATTACTTATCTAACAACAGAGTAGTAATTATTATCATTAAGCTTGCATGAGCATTATCATCAGCTTGGTTCAGATTTTTTTTCAAAGATAACGACTAAAAATGTATTAATTATCAAACTTTATTAAATCAAATTTTACCAAAAAGTCATTAATTATCATATGCTCTTGTAGAGGGGTATG
Unaligned ( gi|11 ): ACAAGCTTGAATAAAACTATCATTATACAAGCAACTTGATTCAGAAAAAGATTTTCAAAAATTCATAAATTCAATCATCAAACTAGATCATTGATAAATATTCATATGCCCTTTCACTTTAACAAATCTCATCTGAGGATGCTTTATGCAAA
Unaligned ( gi|13 ): TGACTAAAATTCATAGACTGTCATATTCCTTTTATAAAGGGTACATGCCCATTTTTTCACAAATTTCATTTAAGGATGCTTTGTGGACAAGTTTG
Unaligned ( gi|15 ): TAAAAAATGTTCAAAAGAAACATTTTAAAACTTCACTTTCAGATATCATCATCATATTCCTTT
Unaligned ( gi|17 ): ACTTTAATGAATTTCATCTAGGGATGCTTTGTGCCAGGTTTGGTTTTCTATACATTT
Unaligned ( gi|18 ): TCAAAAATGTTCAAAACAAATATTTTAAAACTTCACTTTC
Alignments
lowQualScore : 1 11 1 222222 1 11 11 1 5555555555555 1 1 11 11 11 1 1 1 22222 11 11 1 1 2222 111 1 111 1 1 1 1 11 11 1 1 11 222 2222 1 1 333333 1 1 2222 1 1 1 1 33333333 222 1 22
lowQualScore : 0 33 0 222222 0 3 33 33 0 5555555555555 0 0 33 33 33 0 0 0 1 55555 33 33 0 0 1111 777 2 2 0 777 6 3 3 3 3 88 7 88 3 3 11 111 4444 5 1 1 1 5 000000 5 5 1 1 3333 1 5 1 1 5 5 5 55555555 111 5 1 00 66 777 4 777 4 1 4 55 4 4 4 55 4 5 5
lowQualScore : . .. . ...... . . .. .. . ............. . . .. .. .. . . . . ..... .. .. . . .... ... . . . ... . . . . . .. . .. . . .. ... .... . . . . . ...... . . . . .... . . . . . . . ........ ... . . .. .. ... . ... . . . .. . . . .. . . .
lowQualScore : 0 88 0 222222 0 2 88 88 0 0000000000000 0 0 88 88 88 0 0 0 0 00000 88 88 0 0 2222 000 5 5 0 555 7 3 3 3 3 33 3 33 3 3 00 000 5555 5 0 0 0 5 000000 0 5 0 0 0000 0 0 0 0 5 5 5 00000000 000 0 0 77 11 888 4 888 4 8 0 55 0 0 0 55 0 0 0
consensus : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAACTATTTG--AAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CA---TCG-CTCACCT-GAGCAGC--AGT-T-C-CT--AGC-AATAA-AC-AAGCTT
Reference ( family-5400 ) : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAACTATTTG--AAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CA---TCG-CTCACTT-GAGCAGC--AGT-T-C-CT--AGC-AATAA-AC-AAGCTT
gi|1 : GTTAGACTCATTGTTATGCTCAAGAATTACACACAT---GAGATTTA-CATTCACAATCTCTAAGTGTTATGGTGTA-------------TCGCATGGTTAGTTCGCTGTTTTGAGGAAATTGTATCCATCGCGACTTCATTATCAAACATCTGGGTCTCAAAACTCCAGCGAATCCAGATAAACGTAATATAGCAACCAGGTTAGGAATCATCTC-TCTTATGACAAAGGGACTATTCTGT-AAAATAGCAATGCCAGCAACCATATCCAGCCCAACTATATGGGAAGAAAAACATGAGAAAAATCAATTGATATTTTGATGATTTGCTCCAATATTAATTT-----TG---GAATTTA----GCTTTCCAAAATTAGCATCCTTATATATAGATC-GAAGAAAGA------AGTGCGGTTTAAACATAAAAATCATCATAAATTTCGCAGAAGTTTAGATTTAACACAAATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTACTTTCTAC--CCTATACCTTGTGTTAGACAA-AGGCCGATTGGGGCC---AGCG---ATA-CTC-CTTAAAGCAGTAAAGT-TCC-CT--AGC-AATGA-GCGAAGCTT
gi|10 : tttcatgtgaaacattttcatGCCCGT--GGGCC---A-CA---TCG-CTCACCT-GAACAGC--AGT-T-C-CT--AGC-GATAA-AC-AAgagca
gi|12 : -GAACAGC--ACT-T-C-CT--AGC-AATAA-A--AAGCTTatgttcacgagcaaaaccttcattgtaagaacattttgatttaaaaaaaaacctcaaaggcaacaactataaaaccgtgtatgtgtaagatctctcccttgttaagcatttt
gi|14 : AT--GGACC---A-CA---TTG-CTCACCT-GAGCAAC--AGT-T-T-CT--AGC-CATAA-AC-AAGgagcaaaactttcattatactagcaattagattcagaaaaaaaattcaaaggaattcattatgtatatgta
gi|16 : gaatgacacagaaCAAGAGGTCCAT--GGGCT---A-CA---GTG-CTCACTT-GAGCAGT--AGT-T-CGCTTGAGC-AATaatgagcaaaactatcattataaa
gi|2 : atagGTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TTCC-TGGTT-GTTCACTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACTTCT-----CCAA--CTTCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAGCTATTTT--TAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAAATTTGTACAAATTTAATTTACTTTCCAAAATT-GCATCCTTTTCTTTGAATCTGAAAAAAGATATGATAATG-GGTTTGAAT-TAAAAATCATTATGATTAT----GAAGACTA-AGTTACCAC-GATAA-ATGTCCGATATATGATGC-ACC--------TCATATACT---GTAAA-TAATTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCGAT--TGGCC---A-CA---TCA-CTCACTT-AAAGAGT--AGT-T-C-CT--AGC-AATGA-GC-AAGCTTtca
gi|3 : TAGA-TCATTGCTA--ATCGAGG-TTATACA--T---GA-ATTTAACGTTCAC--TCTCTAAGTCTT--GGT-TATCCCTGGTTGTTATCCC-TGGTT-GTTCACTGTT--GAA--AATTTTA--CATCGC-ACT-CATT-TCAAACATCT-----CCAA--CTCCAG--GTTCCAGACAA-TGTAATAGA-CAAC----TTAGA------CTCCTTTA-TGACAA---TATAATTCTGTCTAAAT-GCAATGC-AA-AACAA-ATCCT--CCAACTA-TTG--AAACAAAGCATGAGAAATATCAATT-ATATTCTCATTATTTAATC-AATTTTAATTTAGATT
gi|4 : atttcatgtgaaattttatgttagatgatccAAGAGGTTCAT--GGGCC---A-CA---TGG-CTCACAT-GAGCAGC--AGT-T-C-GT--AGC-AATAA-AC-atacttttaact
gi|5 : TTTATACAACCGATTACTTGTGTAATACATGAGGCCCAT--TGGCCTAAA-TATCTTCGCCTCAGAT-GAGCA-C---GTGT-T-CT--AGCAAATAACAC-AAGCTTtatgcttgataaaaattaccattataaaagcagcttatagttcagaaaaaaaacttttttcaaagataacgactacaagtcattatactatcaaacttaaattattgaatttgactaaaaattcagtaattatcgcatgtccttgttgaggggcatgtccttatatattaaaaaaaattatttaaggtaaatttgcgcaaagttcgattccttatacattcgcaggtaaaaatttgatccc
gi|6 : AGGCCCAT--TGGCC---A-CA---TCA-CTCACTC-GAGCAGC--AGT-T-C-CT--AGC-AAcaatataaaagcttaccactaattagccatcttggttcaggaaatacttttgcaaaggtagatgtcagactaaatttcattaattataaaataattactaactttaacttaaaaaccattaattcacataatttaccaattgtagagggtatgttttca
gi|8 : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--TAATGA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACTTCT-----CCAA--CATCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTGGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTgcaaaattatcactctacaagcagcttgattcagagaaaggattgaacattcatcattatatacataactaaaaattcatagattatcatattcctttgtaaaggggtacatggccatttattttaaccaatttcatttaatgatgctttgtgcaaagtttggttccctatacatt
gi|9 : ttatgttaaaataatGTCCAT--GGGCC---A-AA---TCG-CTCACCT-GAGCAGC--AGT-T-T-CT---GC-AATAA-AC--AGCTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CAAATGACACAAAGATAGACCACATTACTTATCTAACAACAGAGTAGTAATTATTATCATTAAGCTTGCATGAGCATTATCATCAGCTTGGTTCAGATTTTTTTTCAAAGATAACGACTAAAAATGTATTAATTATCAAACTTTATTAAATCAAATTTTACCAAAAAGTCATTAATTATCATATGCTCTTGTAGAGGGGTATG
Unaligned ( gi|11 ): ACAAGCTTGAATAAAACTATCATTATACAAGCAACTTGATTCAGAAAAAGATTTTCAAAAATTCATAAATTCAATCATCAAACTAGATCATTGATAAATATTCATATGCCCTTTCACTTTAACAAATCTCATCTGAGGATGCTTTATGCAAA
Unaligned ( gi|13 ): TGACTAAAATTCATAGACTGTCATATTCCTTTTATAAAGGGTACATGCCCATTTTTTCACAAATTTCATTTAAGGATGCTTTGTGGACAAGTTTG
Unaligned ( gi|15 ): TAAAAAATGTTCAAAAGAAACATTTTAAAACTTCACTTTCAGATATCATCATCATATTCCTTT
Unaligned ( gi|17 ): ACTTTAATGAATTTCATCTAGGGATGCTTTGTGCCAGGTTTGGTTTTCTATACATTT
Unaligned ( gi|18 ): TCAAAAATGTTCAAAACAAATATTTTAAAACTTCACTTTC
Alignments
lowQualScore : 1 11 1 222222 1 11 11 1 5555555555555 1 1 11 11 11 1 1 1 22222 11 11 1 1 2222 111 1 111 1 1 1 1 11 11 1 1 11 222 2222 1 1 333333 1 1 2222 1 1 1 1 33333333 222 1 22
lowQualScore : 0 33 0 222222 0 3 33 33 0 5555555555555 0 0 33 33 33 0 0 0 1 55555 33 33 0 0 1111 777 2 2 0 777 6 3 3 3 3 88 7 88 3 3 11 111 4444 5 1 1 1 5 000000 5 5 1 1 3333 1 5 1 1 5 5 5 55555555 111 5 1 00 66 777 4 0 99 55 4 4 4 4 55 4 5 5
lowQualScore : . .. . ...... . . .. .. . ............. . . .. .. .. . . . . ..... .. .. . . .... ... . . . ... . . . . . .. . .. . . .. ... .... . . . . . ...... . . . . .... . . . . . . . ........ ... . . .. .. ... . . .. .. . . . . .. . . .
lowQualScore : 0 88 0 222222 0 2 88 88 0 0000000000000 0 0 88 88 88 0 0 0 0 00000 88 88 0 0 2222 000 5 5 0 555 7 3 3 3 3 33 3 33 3 3 00 000 5555 5 0 0 0 5 000000 0 5 0 0 0000 0 0 0 0 5 5 5 00000000 000 0 0 77 11 888 4 9 55 55 0 0 0 0 55 0 0 0
consensus : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAACTATTTG--AAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CATCGCTCACCT--GAGCAGC--A-GT-T-C-CT--AGC-AATAA-AC-AAGCTT
Reference ( family-5400 ) : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAACTATTTG--AAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CATCGCTCACCT--GAGCAGC--A-GT-T-C-CT--AGC-AATAA-AC-AAGCTT
gi|1 : GTTAGACTCATTGTTATGCTCAAGAATTACACACAT---GAGATTTA-CATTCACAATCTCTAAGTGTTATGGTGTA-------------TCGCATGGTTAGTTCGCTGTTTTGAGGAAATTGTATCCATCGCGACTTCATTATCAAACATCTGGGTCTCAAAACTCCAGCGAATCCAGATAAACGTAATATAGCAACCAGGTTAGGAATCATCTC-TCTTATGACAAAGGGACTATTCTGT-AAAATAGCAATGCCAGCAACCATATCCAGCCCAACTATATGGGAAGAAAAACATGAGAAAAATCAATTGATATTTTGATGATTTGCTCCAATATTAATTT-----TG---GAATTTA----GCTTTCCAAAATTAGCATCCTTATATATAGATC-GAAGAAAGA------AGTGCGGTTTAAACATAAAAATCATCATAAATTTCGCAGAAGTTTAGATTTAACACAAATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTACTTTCTAC--CCTATACCTTGTGTTAGACAA-AGGCCGATTGGGGCC---AGCGATACTC-CTTA-AAGCAGTAAA-GT-TCC-CT--AGC-AATGA-GCGAAGCTT
gi|10 : tttcatgtgaaacattttcatGCCCGT--GGGCC---A-CATCGCTCACCT--GAACAGC--A-GT-T-C-CT--AGC-GATAA-AC-AAgagca
gi|12 : --GAACAGC--A-CT-T-C-CT--AGC-AATAA-A--AAGCTTatgttcacgagcaaaaccttcattgtaagaacattttgatttaaaaaaaaacctcaaaggcaacaactataaaaccgtgtatgtgtaagatctctcccttgttaagcatttt
gi|14 : AT--GGACC---A-CATTGCTCACCT--GAGCAAC--A-GT-T-T-CT--AGC-CATAA-AC-AAGgagcaaaactttcattatactagcaattagattcagaaaaaaaattcaaaggaattcattatgtatatgta
gi|16 : gaatgacacagaaCAAGAGGTCCAT--GGGCT---A-CAGTGCTCACTT--GAGCAGT--A-GT-T-CGCTTGAGC-AATaatgagcaaaactatcattataaa
gi|2 : atagGTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TTCC-TGGTT-GTTCACTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACTTCT-----CCAA--CTTCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAGCTATTTT--TAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAAATTTGTACAAATTTAATTTACTTTCCAAAATT-GCATCCTTTTCTTTGAATCTGAAAAAAGATATGATAATG-GGTTTGAAT-TAAAAATCATTATGATTAT----GAAGACTA-AGTTACCAC-GATAA-ATGTCCGATATATGATGC-ACC--------TCATATACT---GTAAA-TAATTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCGAT--TGGCC---A-CATCACTCACTT--AAAGAGT--A-GT-T-C-CT--AGC-AATGA-GC-AAGCTTtca
gi|3 : TAGA-TCATTGCTA--ATCGAGG-TTATACA--T---GA-ATTTAACGTTCAC--TCTCTAAGTCTT--GGT-TATCCCTGGTTGTTATCCC-TGGTT-GTTCACTGTT--GAA--AATTTTA--CATCGC-ACT-CATT-TCAAACATCT-----CCAA--CTCCAG--GTTCCAGACAA-TGTAATAGA-CAAC----TTAGA------CTCCTTTA-TGACAA---TATAATTCTGTCTAAAT-GCAATGC-AA-AACAA-ATCCT--CCAACTA-TTG--AAACAAAGCATGAGAAATATCAATT-ATATTCTCATTATTTAATC-AATTTTAATTTAGATT
gi|4 : atttcatgtgaaattttatgttagatgatccAAGAGGTTCAT--GGGCC---A-CATGGCTCACAT--GAGCAGC--A-GT-T-C-GT--AGC-AATAA-AC-atacttttaact
gi|5 : TTTATACAACCGATTACTTGTGTAATACATGAGGCCCAT--TGGCCTAAA-TATC-TTCGCCTCAGATGAGC--ACGTGT-T-CT--AGCAAATAACAC-AAGCTTtatgcttgataaaaattaccattataaaagcagcttatagttcagaaaaaaaacttttttcaaagataacgactacaagtcattatactatcaaacttaaattattgaatttgactaaaaattcagtaattatcgcatgtccttgttgaggggcatgtccttatatattaaaaaaaattatttaaggtaaatttgcgcaaagttcgattccttatacattcgcaggtaaaaatttgatccc
gi|6 : AGGCCCAT--TGGCC---A-CATCACTCACTC--GAGCAGC--A-GT-T-C-CT--AGC-AAcaatataaaagcttaccactaattagccatcttggttcaggaaatacttttgcaaaggtagatgtcagactaaatttcattaattataaaataattactaactttaacttaaaaaccattaattcacataatttaccaattgtagagggtatgttttca
gi|8 : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--TAATGA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACTTCT-----CCAA--CATCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTGGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTgcaaaattatcactctacaagcagcttgattcagagaaaggattgaacattcatcattatatacataactaaaaattcatagattatcatattcctttgtaaaggggtacatggccatttattttaaccaatttcatttaatgatgctttgtgcaaagtttggttccctatacatt
gi|9 : ttatgttaaaataatGTCCAT--GGGCC---A-AATCGCTCACCT--GAGCAGC--A-GT-T-T-CT---GC-AATAA-AC--AGCTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CAAATGACACAAAGATAGACCACATTACTTATCTAACAACAGAGTAGTAATTATTATCATTAAGCTTGCATGAGCATTATCATCAGCTTGGTTCAGATTTTTTTTCAAAGATAACGACTAAAAATGTATTAATTATCAAACTTTATTAAATCAAATTTTACCAAAAAGTCATTAATTATCATATGCTCTTGTAGAGGGGTATG
Unaligned ( gi|11 ): ACAAGCTTGAATAAAACTATCATTATACAAGCAACTTGATTCAGAAAAAGATTTTCAAAAATTCATAAATTCAATCATCAAACTAGATCATTGATAAATATTCATATGCCCTTTCACTTTAACAAATCTCATCTGAGGATGCTTTATGCAAA
Unaligned ( gi|13 ): TGACTAAAATTCATAGACTGTCATATTCCTTTTATAAAGGGTACATGCCCATTTTTTCACAAATTTCATTTAAGGATGCTTTGTGGACAAGTTTG
Unaligned ( gi|15 ): TAAAAAATGTTCAAAAGAAACATTTTAAAACTTCACTTTCAGATATCATCATCATATTCCTTT
Unaligned ( gi|17 ): ACTTTAATGAATTTCATCTAGGGATGCTTTGTGCCAGGTTTGGTTTTCTATACATTT
Unaligned ( gi|18 ): TCAAAAATGTTCAAAACAAATATTTTAAAACTTCACTTTC
Alignments
lowQualScore : 1 11 1 222222 1 11 11 1 5555555555555 1 1 11 11 11 1 1 1 22222 11 11 1 1 2222 111 1 111 1 1 1 1 11 11 1 1 11 222 2222 1 1 333333 1 1 2222 1 1 1 1 33333333 222 1 22
lowQualScore : 0 33 0 222222 0 3 33 33 0 5555555555555 0 0 33 33 33 0 0 0 1 55555 33 33 0 0 1111 777 2 2 0 777 6 3 3 3 3 88 7 88 3 3 11 111 4444 5 1 1 1 5 000000 5 5 1 1 3333 1 5 1 1 5 5 5 55555555 111 5 1 00 66 777 4 0 99 55 4 4 4 4 55 4 5 5
lowQualScore : . .. . ...... . . .. .. . ............. . . .. .. .. . . . . ..... .. .. . . .... ... . . . ... . . . . . .. . .. . . .. ... .... . . . . . ...... . . . . .... . . . . . . . ........ ... . . .. .. ... . . .. .. . . . . .. . . .
lowQualScore : 0 88 0 222222 0 2 88 88 0 0000000000000 0 0 88 88 88 0 0 0 0 00000 88 88 0 0 2222 000 5 5 0 555 7 3 3 3 3 33 3 33 3 3 00 000 5555 5 0 0 0 5 000000 0 5 0 0 0000 0 0 0 0 5 5 5 00000000 000 0 0 77 11 888 4 9 55 55 0 0 0 0 55 0 0 0
consensus : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAACTATTTG--AAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CATCGCTCACCT--GAGCAGC--A-GT-T-C-CT--AGC-AATAA-AC-AAGCTT
Reference ( family-5400 ) : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAACTATTTG--AAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CATCGCTCACCT--GAGCAGC--A-GT-T-C-CT--AGC-AATAA-AC-AAGCTT
gi|1 : GTTAGACTCATTGTTATGCTCAAGAATTACACACAT---GAGATTTA-CATTCACAATCTCTAAGTGTTATGGTGTA-------------TCGCATGGTTAGTTCGCTGTTTTGAGGAAATTGTATCCATCGCGACTTCATTATCAAACATCTGGGTCTCAAAACTCCAGCGAATCCAGATAAACGTAATATAGCAACCAGGTTAGGAATCATCTC-TCTTATGACAAAGGGACTATTCTGT-AAAATAGCAATGCCAGCAACCATATCCAGCCCAACTATATGGGAAGAAAAACATGAGAAAAATCAATTGATATTTTGATGATTTGCTCCAATATTAATTT-----TG---GAATTTA----GCTTTCCAAAATTAGCATCCTTATATATAGATC-GAAGAAAGA------AGTGCGGTTTAAACATAAAAATCATCATAAATTTCGCAGAAGTTTAGATTTAACACAAATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTACTTTCTAC--CCTATACCTTGTGTTAGACAA-AGGCCGATTGGGGCC---AGCGATACTC-CTTA-AAGCAGTAAA-GT-TCC-CT--AGC-AATGA-GCGAAGCTT
gi|10 : tttcatgtgaaacattttcatGCCCGT--GGGCC---A-CATCGCTCACCT--GAACAGC--A-GT-T-C-CT--AGC-GATAA-AC-AAgagca
gi|12 : --GAACAGC--A-CT-T-C-CT--AGC-AATAA-A--AAGCTTatgttcacgagcaaaaccttcattgtaagaacattttgatttaaaaaaaaacctcaaaggcaacaactataaaaccgtgtatgtgtaagatctctcccttgttaagcatttt
gi|14 : AT--GGACC---A-CATTGCTCACCT--GAGCAAC--A-GT-T-T-CT--AGC-CATAA-AC-AAGgagcaaaactttcattatactagcaattagattcagaaaaaaaattcaaaggaattcattatgtatatgta
gi|16 : gaatgacacagaaCAAGAGGTCCAT--GGGCT---A-CAGTGCTCACTT--GAGCAGT--A-GT-T-CGCTTGAGC-AATaatgagcaaaactatcattataaa
gi|2 : atagGTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TTCC-TGGTT-GTTCACTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACTTCT-----CCAA--CTTCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAGCTATTTT--TAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAAATTTGTACAAATTTAATTTACTTTCCAAAATT-GCATCCTTTTCTTTGAATCTGAAAAAAGATATGATAATG-GGTTTGAAT-TAAAAATCATTATGATTAT----GAAGACTA-AGTTACCAC-GATAA-ATGTCCGATATATGATGC-ACC--------TCATATACT---GTAAA-TAATTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCGAT--TGGCC---A-CATCACTCACTT--AAAGAGT--A-GT-T-C-CT--AGC-AATGA-GC-AAGCTTtca
gi|3 : TAGA-TCATTGCTA--ATCGAGG-TTATACA--T---GA-ATTTAACGTTCAC--TCTCTAAGTCTT--GGT-TATCCCTGGTTGTTATCCC-TGGTT-GTTCACTGTT--GAA--AATTTTA--CATCGC-ACT-CATT-TCAAACATCT-----CCAA--CTCCAG--GTTCCAGACAA-TGTAATAGA-CAAC----TTAGA------CTCCTTTA-TGACAA---TATAATTCTGTCTAAAT-GCAATGC-AA-AACAA-ATCCT--CCAACTA-TTG--AAACAAAGCATGAGAAATATCAATT-ATATTCTCATTATTTAATC-AATTTTAATTTAGATT
gi|4 : atttcatgtgaaattttatgttagatgatccAAGAGGTTCAT--GGGCC---A-CATGGCTCACAT--GAGCAGC--A-GT-T-C-GT--AGC-AATAA-AC-atacttttaact
gi|5 : TTTATACAACCGATTACTTGTGTAATACATGAGGCCCAT--TGGCCTAAA-TATC-TTCGCCTCAGATGAGC--ACGTGT-T-CT--AGCAAATAACAC-AAGCTTtatgcttgataaaaattaccattataaaagcagcttatagttcagaaaaaaaacttttttcaaagataacgactacaagtcattatactatcaaacttaaattattgaatttgactaaaaattcagtaattatcgcatgtccttgttgaggggcatgtccttatatattaaaaaaaattatttaaggtaaatttgcgcaaagttcgattccttatacattcgcaggtaaaaatttgatccc
gi|6 : AGGCCCAT--TGGCC---A-CATCACTCACTC--GAGCAGC--A-GT-T-C-CT--AGC-AAcaatataaaagcttaccactaattagccatcttggttcaggaaatacttttgcaaaggtagatgtcagactaaatttcattaattataaaataattactaactttaacttaaaaaccattaattcacataatttaccaattgtagagggtatgttttca
gi|8 : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--TAATGA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACTTCT-----CCAA--CATCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTGGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTgcaaaattatcactctacaagcagcttgattcagagaaaggattgaacattcatcattatatacataactaaaaattcatagattatcatattcctttgtaaaggggtacatggccatttattttaaccaatttcatttaatgatgctttgtgcaaagtttggttccctatacatt
gi|9 : ttatgttaaaataatGTCCAT--GGGCC---A-AATCGCTCACCT--GAGCAGC--A-GT-T-T-CT---GC-AATAA-AC--AGCTT
blockSeqs : . . . TAAT . A . . . TCCCTGGTTGTTA . . . . . . . . T . . . . . . T C C . . C . . . . . T . . . AA TAC ATTT . T C T T TATGAT . . T A . A . G C . . . . . . A AA . TAA . CA . C G . G TG A C .
blockSeqs : . . . T . A . . . . . . . . . . . . A . . . . . . T C C . . C . . . . . . . . . AG A . . . . . . . . . . . . .
blockSeqs : . . . T . A . . . . . . . . . . . . T . . . . . . . . C . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : ** ** **
originalCons : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAACTATTTG--AAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CATCGCTCACCT--GAGCAGC--A-GT-T-C-CT--AGC-AATAA-AC-AAGCTT
finalCons : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAACTATTTG--AAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CATCGCTCACCT--GAGCAGC--A-GT-T-C-CT--AGC-AATAA-AC-AAGCTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CAAATGACACAAAGATAGACCACATTACTTATCTAACAACAGAGTAGTAATTATTATCATTAAGCTTGCATGAGCATTATCATCAGCTTGGTTCAGATTTTTTTTCAAAGATAACGACTAAAAATGTATTAATTATCAAACTTTATTAAATCAAATTTTACCAAAAAGTCATTAATTATCATATGCTCTTGTAGAGGGGTATG
Unaligned ( gi|11 ): ACAAGCTTGAATAAAACTATCATTATACAAGCAACTTGATTCAGAAAAAGATTTTCAAAAATTCATAAATTCAATCATCAAACTAGATCATTGATAAATATTCATATGCCCTTTCACTTTAACAAATCTCATCTGAGGATGCTTTATGCAAA
Unaligned ( gi|13 ): TGACTAAAATTCATAGACTGTCATATTCCTTTTATAAAGGGTACATGCCCATTTTTTCACAAATTTCATTTAAGGATGCTTTGTGGACAAGTTTG
Unaligned ( gi|15 ): TAAAAAATGTTCAAAAGAAACATTTTAAAACTTCACTTTCAGATATCATCATCATATTCCTTT
Unaligned ( gi|17 ): ACTTTAATGAATTTCATCTAGGGATGCTTTGTGCCAGGTTTGGTTTTCTATACATTT
Unaligned ( gi|18 ): TCAAAAATGTTCAAAACAAATATTTTAAAACTTCACTTTC
Alignments
lowQualScore : 1 11 1 222222 1 11 11 1 5555555555555 1 1 11 11 11 1 1 1 22222 11 11 1 1 2222 111 1 111 1 1 1 1 11 11 1 1 11 222 2222 1 1 333333 1 1 2222 1 1 1 1 33333333 222 1 22
lowQualScore : 0 33 0 222222 0 3 33 33 0 5555555555555 0 0 33 33 33 0 0 0 1 55555 33 33 0 0 1111 777 2 2 0 777 6 3 3 3 3 88 7 88 3 3 11 111 4444 5 1 1 1 5 000000 5 5 1 1 3333 1 5 1 1 5 5 5 55555555 111 5 1 00 66 777 4 0 99 55 4 4 4 4 55 4 5 5
lowQualScore : . .. . ...... . . .. .. . ............. . . .. .. .. . . . . ..... .. .. . . .... ... . . . ... . . . . . .. . .. . . .. ... .... . . . . . ...... . . . . .... . . . . . . . ........ ... . . .. .. ... . . .. .. . . . . .. . . .
lowQualScore : 0 88 0 222222 0 2 88 88 0 0000000000000 0 0 88 88 88 0 0 0 0 00000 88 88 0 0 2222 000 5 5 0 555 7 3 3 3 3 33 3 33 3 3 00 000 5555 5 0 0 0 5 000000 0 5 0 0 0000 0 0 0 0 5 5 5 00000000 000 0 0 77 11 888 4 9 55 55 0 0 0 0 55 0 0 0
consensus : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAACTATTTG--AAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CATCGCTCACCT--GAGCAGC--A-GT-T-C-CT--AGC-AATAA-AC-AAGCTT
Reference ( family-5400 ) : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACNTCT-----CCAA--CTCCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAACTATTTG--AAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAGATTTGTACGAATTTAATTTGCTTTCCAAAATTAGCATCCTTNTNTNTGGATCTGAAGAAAGATATGATAGTGCGGTTTGAACATAAAAATCATCATGANTNTCGCAGAAGNCTAGANTTANCACAGATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTANTTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCCAT--GGGCC---A-CATCGCTCACCT--GAGCAGC--A-GT-T-C-CT--AGC-AATAA-AC-AAGCTT
gi|1 : GTTAGACTCATTGTTATGCTCAAGAATTACACACAT---GAGATTTA-CATTCACAATCTCTAAGTGTTATGGTGTA-------------TCGCATGGTTAGTTCGCTGTTTTGAGGAAATTGTATCCATCGCGACTTCATTATCAAACATCTGGGTCTCAAAACTCCAGCGAATCCAGATAAACGTAATATAGCAACCAGGTTAGGAATCATCTC-TCTTATGACAAAGGGACTATTCTGT-AAAATAGCAATGCCAGCAACCATATCCAGCCCAACTATATGGGAAGAAAAACATGAGAAAAATCAATTGATATTTTGATGATTTGCTCCAATATTAATTT-----TG---GAATTTA----GCTTTCCAAAATTAGCATCCTTATATATAGATC-GAAGAAAGA------AGTGCGGTTTAAACATAAAAATCATCATAAATTTCGCAGAAGTTTAGATTTAACACAAATAATGTGTCCGATACATGATGCAACCATCATCAGTCATGTACTTAGGTAAAGTACTTTCTAC--CCTATACCTTGTGTTAGACAA-AGGCCGATTGGGGCC---AGCGATACTC-CTTA-AAGCAGTAAA-GT-TCC-CT--AGC-AATGA-GCGAAGCTT
gi|10 : tttcatgtgaaacattttcatGCCCGT--GGGCC---A-CATCGCTCACCT--GAACAGC--A-GT-T-C-CT--AGC-GATAA-AC-AAgagca
gi|12 : --GAACAGC--A-CT-T-C-CT--AGC-AATAA-A--AAGCTTatgttcacgagcaaaaccttcattgtaagaacattttgatttaaaaaaaaacctcaaaggcaacaactataaaaccgtgtatgtgtaagatctctcccttgttaagcatttt
gi|14 : AT--GGACC---A-CATTGCTCACCT--GAGCAAC--A-GT-T-T-CT--AGC-CATAA-AC-AAGgagcaaaactttcattatactagcaattagattcagaaaaaaaattcaaaggaattcattatgtatatgta
gi|16 : gaatgacacagaaCAAGAGGTCCAT--GGGCT---A-CAGTGCTCACTT--GAGCAGT--A-GT-T-CGCTTGAGC-AATaatgagcaaaactatcattataaa
gi|2 : atagGTTAGA-TCATTGTTA--ATCAAGG-TTATACA--T---GA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TTCC-TGGTT-GTTCACTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACTTCT-----CCAA--CTTCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTAGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTCAAAAT-GCAATGC-AG-AACAA-ATCCA--CCAGCTATTTT--TAACAAAACATGAGAAAAATCAATT-ATATTTTGATGATTTAATC-AATTTTAATTTAAATTTGTACAAATTTAATTTACTTTCCAAAATT-GCATCCTTTTCTTTGAATCTGAAAAAAGATATGATAATG-GGTTTGAAT-TAAAAATCATTATGATTAT----GAAGACTA-AGTTACCAC-GATAA-ATGTCCGATATATGATGC-ACC--------TCATATACT---GTAAA-TAATTTCTACA-CCTATACCTTGTGTAAGACAAGAGGCCGAT--TGGCC---A-CATCACTCACTT--AAAGAGT--A-GT-T-C-CT--AGC-AATGA-GC-AAGCTTtca
gi|3 : TAGA-TCATTGCTA--ATCGAGG-TTATACA--T---GA-ATTTAACGTTCAC--TCTCTAAGTCTT--GGT-TATCCCTGGTTGTTATCCC-TGGTT-GTTCACTGTT--GAA--AATTTTA--CATCGC-ACT-CATT-TCAAACATCT-----CCAA--CTCCAG--GTTCCAGACAA-TGTAATAGA-CAAC----TTAGA------CTCCTTTA-TGACAA---TATAATTCTGTCTAAAT-GCAATGC-AA-AACAA-ATCCT--CCAACTA-TTG--AAACAAAGCATGAGAAATATCAATT-ATATTCTCATTATTTAATC-AATTTTAATTTAGATT
gi|4 : atttcatgtgaaattttatgttagatgatccAAGAGGTTCAT--GGGCC---A-CATGGCTCACAT--GAGCAGC--A-GT-T-C-GT--AGC-AATAA-AC-atacttttaact
gi|5 : TTTATACAACCGATTACTTGTGTAATACATGAGGCCCAT--TGGCCTAAA-TATC-TTCGCCTCAGATGAGC--ACGTGT-T-CT--AGCAAATAACAC-AAGCTTtatgcttgataaaaattaccattataaaagcagcttatagttcagaaaaaaaacttttttcaaagataacgactacaagtcattatactatcaaacttaaattattgaatttgactaaaaattcagtaattatcgcatgtccttgttgaggggcatgtccttatatattaaaaaaaattatttaaggtaaatttgcgcaaagttcgattccttatacattcgcaggtaaaaatttgatccc
gi|6 : AGGCCCAT--TGGCC---A-CATCACTCACTC--GAGCAGC--A-GT-T-C-CT--AGC-AAcaatataaaagcttaccactaattagccatcttggttcaggaaatacttttgcaaaggtagatgtcagactaaatttcattaattataaaataattactaactttaacttaaaaaccattaattcacataatttaccaattgtagagggtatgttttca
gi|8 : GTTAGA-TCATTGTTA--ATCAAGG-TTATACA--TAATGA-ATTTAACATTCAC--TCTCTAAGTCTT--GGT-TA-------------TCCC-TGGTT-GTTCGCTGTT--GAG--AATTTTA--CATCGC-ACT-CATT-TCAAACTTCT-----CCAA--CATCAG--ATTCCAGATAA-TGTAATATA-CAAC----TTGGG--TCCTCTCCTCTT-TGACAA---TATAATTCTGTgcaaaattatcactctacaagcagcttgattcagagaaaggattgaacattcatcattatatacataactaaaaattcatagattatcatattcctttgtaaaggggtacatggccatttattttaaccaatttcatttaatgatgctttgtgcaaagtttggttccctatacatt
gi|9 : ttatgttaaaataatGTCCAT--GGGCC---A-AATCGCTCACCT--GAGCAGC--A-GT-T-T-CT---GC-AATAA-AC--AGCTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CAAATGACACAAAGATAGACCACATTACTTATCTAACAACAGAGTAGTAATTATTATCATTAAGCTTGCATGAGCATTATCATCAGCTTGGTTCAGATTTTTTTTCAAAGATAACGACTAAAAATGTATTAATTATCAAACTTTATTAAATCAAATTTTACCAAAAAGTCATTAATTATCATATGCTCTTGTAGAGGGGTATG
Unaligned ( gi|11 ): ACAAGCTTGAATAAAACTATCATTATACAAGCAACTTGATTCAGAAAAAGATTTTCAAAAATTCATAAATTCAATCATCAAACTAGATCATTGATAAATATTCATATGCCCTTTCACTTTAACAAATCTCATCTGAGGATGCTTTATGCAAA
Unaligned ( gi|13 ): TGACTAAAATTCATAGACTGTCATATTCCTTTTATAAAGGGTACATGCCCATTTTTTCACAAATTTCATTTAAGGATGCTTTGTGGACAAGTTTG
Unaligned ( gi|15 ): TAAAAAATGTTCAAAAGAAACATTTTAAAACTTCACTTTCAGATATCATCATCATATTCCTTT
Unaligned ( gi|17 ): ACTTTAATGAATTTCATCTAGGGATGCTTTGTGCCAGGTTTGGTTTTCTATACATTT
Unaligned ( gi|18 ): TCAAAAATGTTCAAAACAAATATTTTAAAACTTCACTTTC