lowQualScore : 22 2 3 22 33 3333333 111111 1111111 22 11 222 11 2222222222222 111 1111 11111 11 2222222222222222222 11111 222222 1 111 1 1111 3 11 111111 11111 2222 2222
lowQualScore : 4 777 4 99 4 4 4 4 0 4 55 4 4 4 8 55 0 6 4 4 8 4 00 8 4 88 4 5 5 5 66 5 5 5 0 6666666 1 9999 666666 5 5 8 4444444 4 99 4 4 44 4 55 4 00 0 4 11 4 4 888 4 4 3 4 00 4 4 6666666666666 4 555 3 99999 99999 55 3 55 3 3 7777 000 3 0000 3 8888 55 3 55 7 3 3 3 7777 3 888 3 3 7 3 3 11111 55 4 4 1 1 4 22 3 7 3 3 3 7777 55 3333333333333333333 3 444 55 3 555 3 1 6666 55 3 3 55555 3 3 111111 66 4 55 4 3 4 4 4 4 4 55 4 4 999 3 000 4 4 4 8 3 7777 55 3 3 55 55 3 2 3 3 0000 3 3 6 3 3 7 55 3 3 3 44 3 44 6 3 555 3 3 111111 00000 3 3 3 8 0000 6 44 3333 44 6 3 3
lowQualScore : . ... . .. . . . . . . .. . . . . .. . . . . . . .. . . .. . . . . .. . . . . ....... . .... ...... . . . ....... . .. . . .. . .. . .. . . .. . . ... . . . . .. . . ............. . ... . ..... ..... .. . .. . . .... ... . .... . .... .. . .. . . . . .... . ... . . . . . ..... .. . . . . . .. . . . . . .... .. ................... . ... .. . ... . . .... .. . . ..... . . ...... .. . .. . . . . . . . .. . . ... . ... . . . . . .... .. . . .. .. . . . . .... . . . . . . .. . . . .. . .. . . ... . . ...... ..... . . . . .... . .. .... .. . . .
lowQualScore : 4 111 0 55 0 0 0 0 0 0 55 0 0 0 0 55 7 6 0 0 0 0 88 9 4 99 4 0 0 0 99 0 0 0 1 0000000 4 0000 000000 0 0 9 4444444 0 55 0 0 88 0 55 0 88 8 0 00 0 0 555 0 0 5 0 66 0 0 3333333333333 0 111 6 11111 11111 99 6 00 6 6 7777 000 6 6666 6 5555 00 6 00 3 3 3 3 6666 3 444 3 6 3 6 6 00000 55 0 4 9 8 8 00 4 3 6 6 6 7777 00 8888888888888888888 6 111 00 6 555 6 4 5555 00 6 6 66666 6 6 777777 55 0 55 0 0 0 0 0 0 0 55 0 0 999 6 000 0 0 0 0 6 7777 00 6 6 00 00 6 8 6 6 1111 6 6 4 6 6 3 66 6 6 6 66 3 66 7 3 444 1 1 999999 88888 1 1 1 1 2222 2 22 9999 22 2 1 1
consensus : AACGTGCAA-CC-TTAG-TTTCTCAA-TTT-AGA-CTGAGCT-AC-TTGC-T--CAAAAT-AA-T-GATT-CGT--GTTGTGGGTTC-TC-TCGG-C-TTTAT-TCCGAGATA-TT-GAAC-AG-CGATT-G-AG-GGT-AAAA--TGAT-T-TG-AGACAA---ATGATTAGATCAAAATGAT--T-ATTTA--T--TT-AC-CACG-AAG-------CAATCCA-AT--C-ACG-TA-TA-ATTA--T-A-ACAAA-A--TTCAATCG-ACTCAAAATT-ACTC-A-CTTCAA-TTAC-TCAAAA-TTGCT-CAA-TG---T---T-AT--ATAT-C-T-GC-TCAA-----AT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAG-A--AA--AA-C--TATAA-TAGAAG-T-AAG---GGT-GC--TA-GT-G-AGCAAT-G-T--C--TCATTCCTATCTAAA--GTA-T-TTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-A----A--AGA-C-T-AT-T--CA-G--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-AT--TG-CT-A-A---GTTT-TC-TCTCCTTA-CG-GATG-TTGTCT--C-TGTCACGAATG-AG-T-G-T-A--GA-C-TGA--CTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CTC-CGA----T--TGGATAATGATTGAGCG-TTA-TG--A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTA-GG-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATA-ATATACACA-TG--ATGA--AAAA--AT-AA-TA-CCAAACTCGTT
Reference ( gi|5 ) : AACGTGCAA-CC-TTAG-TTTCTCA--TTT-AGA-CTGAGCT-AC-T-GC-T--CAAAAT-AA-T-GATT-CGT--GTTGTGGGTTCGTC-TCGG-C-TTTAT-TCCGAGATAATT-GAAC-A--CGATT-G-AG-GGT-AAAA--TGAT-T-TG-AGACAA---ATG-TTAGATCAAAATGAT--T-ATTTA--T--TT-AC-CACG-AAG-------CAATCCA-AT--C-ACG-TA-TA-ATTA--T-A-TCAAA-A--TTCAATCG-ACTCAAAATT-ACTC-C-CTTCAA-TTAC-TCAAAA-TTACT-CAA-TG---T---T-AT--ATAT-C-T-GC-TCAA-----AT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAG-A--AA--AA-C--TATAA-TAAAAG-T-AAG---GGT-GC--TA-GT-G-AGCAAT-G-T--C--TCATTCCTATCTAAA--GTA-T-TTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-A----A--AGA-C-T-AT-T--CA-A--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-AT--TG-CT-A-A---GTTT-TC-TCTCCTTAGCG-GATG-TTGTCT--C-TGTCAAGAATG-AG-T-G-T-A--GA-C-TGG--CTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CCC-CGA----T--TGGATAATGATTGAGCG-TTA-TG--A--TT-GTTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-C-GT-G-TATT-GGTA-TG-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATGAGATA-ATATACACA-TG--ATGA--AGAA--AT-AA-TA-CCAAACTCGTT
gi|2 : AACGTGCAA-CCCTTAC-GTTCTCAA-TTT-AGA-CTGAGCTTAC-TTGC-T--CAAAATTAA-TTGATTTCGT--GT-GTAGGGTTATC-TCGTTC-TTTAT-TCCGACGTA-TT-GAAC-AA-CGATT-G-AG-GGT-AAAA--TGATAT-TG-AGACAA----TGATTAGATCAAA-TGAT--T-ATTT---T--TT-AC-CACG-AAG-------CAATCCA-AT--C-ACG-T--TATATTA--TTA-ACAAA-AATTTCAATCG-ACTCAAAATTTACTCAC-TTTCAA-TTAC-TCAAAA-T-GCT-CA--TG---T---TTAT--ATAT-C-T-GC-TCAA-----AA-----ATT-A-TCTTTGTCCAATT-CGA-CT-AAT------A---TAGTAAAAT-GAG-A--AA--AAAC--TATAA-TAGAAG-T-AAG---GGT-G---TA--T-GTAGCAATTG-T-----TCATTCCTATCTAAA--GTA-T-TTA-TAAA--TTATTTTATTACTGGAC-TTTGT-TA-GG-A----A--AGA-C-TTAT-T--CA-G--T-CA-C-GGTC--TA-TA-C-C-TTAC--A-AC--TG-CT-T-A---GTTTATC-TCTC-TTA-CG--ATG-T-GTCT--C-TGTCA-GAATG-AG-TCA-T-A--GA-C-TGA--CT--GATC-ACG---TATTTAT-ACACCTACTGCTTC-G-CTC-CGA----T--TGGATAATGATTGAGCG-TTA-TG--A--TT-GGTTAG-AAA--CTAGCTATTTG-AC-TT-GGT-CAGT-GTTAT---GTA-GGATTTCAA---C--CA-CTTTTCCGATTTCAC--A--TTTA-ATAC------TATATTAGGAAA-AAAAAATAAT-ATAAGATA---ATACACC-TG--ATGA--AAAA--TT-AATTA-CCAAACTCGTT
gi|19 : tgtAACGTGCAA-TC-GCAG-ATTCT-----------------------T-GC-T--CAAAAT-AA-T-AATT-AGT--GATGTGGGTTC-TC-TCGC-C-TTTAT-TCCGAGATA
gi|21 : tgtAACGAGCAA-CC-TT-G-TTTCTCAA-TTT-AGA-CTGAGCT-Att
gi|3 : attgtaCGTGCAA-CC-GTAG-TTTCTCAA-TTT-AGA-CTGAGCT-AC-TTGC-T--CAAACT-AA-T-GATT-CGT--GTGGTGGGTTC-TC-TCGG-C-TTTAT-TCCGAGATA-TT-GAAC-AGACGATTTG-AGTGGT-AAAA--TGAT-T-TG-AGACAA----TGATTAGATCAAAATGAT--T-ATTT-------T-AC-CAGA-AAG-------CAATTCA-AT--C-ACG-TA-TA-ATTA--T-A-ACAAA-A--TT-AATCG-ACTCAAAATC-ACTC-A-CTTCAA-TTAC-TCAAAA-TTGCT-CAAATG---TA--T-ATTAATAT-C-T-GC-TCAA-----AC-----AAT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAA-T-GAG-A--AA--AA-C--TATAAATAGAAGAT-AAG---GGTTGC--T--GT-G-AGCA-T-G-T--C--TCATTCCTATCTAAA--GTA-T-TTAATAAAA-TTATTTTATTACTGGAC-TTTGTATA-GG-A----A--AGA-C-TTAT-T--CA-G--T-CA-C-G-TC--TA-TA-C---TTGCTAA-GC--AG-CT-A-A---GTTT-TC-TCTCCTTACCG-GATG-TTGTAT--C-TGTTACGAATG-AG-T-G-T-A--GA-C-TGA--CTTGGTTC-ACGG--TGTTTAT-AC-CCTACTGCTTC-G-CCC-CGA----T--TGGATAATGATTGATCG-TTA-CG--A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTA-GG-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--TTTA-A-ATTACATGTATATC-----A-AAGGAAT-AT-ATAAGAT--ATATACACA-TG--ATGA--A-AA--CT-AA-TA-CCAAACTCGTTgct
gi|1 : CGTGCA---C-TAGG-TTTTCCAA-TTT-AGA-CTGAGCT-AT-T-GC-TGCCAAAAT-AA-T-GATT-CGT--GTTGTGAGTTC-TC-TCG----CTTATGTCCGAGATATTTTGAAC-AA-CGATT-G-AG-GGT-AAA---TGAT-T-TG-AGAC-A---ATGATTAGATCAAAATGATTGT-ATTTA--T--TT-AC-CACGTAAG-------C--TCCA-AT--C-AC--TA-TA-ATTA--T-A-ACAAA-AATTTCAATCG-ACTCAAAATT-A-TC-A-CTTCAA-TTACGTCAAAATTTGCTCCAA-TGTATT---T-AT--ATAT-C-TGGC-TCAA-----AT-----ATTAA-TCT--GCTCAATA-CGATCTCAATTTTGTTG---TA-TCCAAT-GAG-ACGAAATAA-C--TAAAA-TAAGAG-TCAAGTTCGGT-GCATTG-GT-G-AGCAAT-G-T--CTATCATT-CTATCTAAA--GTA-T-TTAAT-AAATTTATTTTATTACTG-AC-TTTGTATA-GATA----A--ATG-C-T-AT-TCCCA-G--TACA-C-G-TTCATA-TA-C-C-CCAC--ATAT--TG-CT-A-AAGTATTT-TCATCTCCTTACCGAGATG-TTGTCTTCT-TGTCAAGAATG-AG-T-GCT-ACGAA-C-TTGAACTTGGTTCAACGGGATATTTATGAC-CCTACTGCTTC-G-CTC-CGAATTGT--TGACTAATGATTGAGCG--TA-TG--A--TT-GGTTAG-AAA-TCTAGCTCTTTGTA--TT-GGT-CAGT-G-TATT-GGTA-TG-TTTCAA-T-CCACA-C--TTCC-GATTCAC-AATTTTTATA-AC------TATATT-----A-CAGGAAT-AT-ATAGGAT--ATATACACATTG--GTGA--A-AA--AT-AA-TA-
gi|7 : CGTGCAA-CG-T-AG-TTT-TCA--ATT-AGAACTGAGCT-ACTT-GC-T---AAAAT-AA-T-GATT-CGT--GTGGTGGGTTC-TCATCGG-CTTTTAT-T-CGAGAATATT-GAAC-AGGCGATT-G-AG-GGT-AAAA--TGAT-T-TGAAGACAA---GTGATTAGATAAAAATGAT--T-ACTTATTT--TT-AC-CACG-AAG-------CAATCCA-AT--T-AC--TATTA-ATTAGTT-A-AC-AA-A--TTCAATCG-GCTCAAAATT-ACTC------------AT-TC---A-TT--T-C--------T---T------TCT-C-T-GC-TCAA-----AT-----ATT-A-ATT--GCTCAATTCCAA-CTCAAT----TTGA--TA-TAAAATGGAG-A--AA--AA-A--TATAA-TAGAAG-T-AA----GGT-GC--TA-GT-G-AGCAAT-GCT--C--TCATTCCTATCTACA--GTA-T-T---TAAAAATTATTTTATTACTG-ACATTTGTATACGG-A----A--AGATT-T-AT-T--CA-C--T-CA-CGG-TC--TA-TT-CGT-TTAC--A-AT--TG-C--------------C-T-------------TG-TTGTCT--C-TGTCACGAATG-AG-T-G-T-A--GATC-TGA--CTTGGTTC-ACGT--TATTTAT-A--CCTACTG-TTC-G--CT-CGA----T--TGGATAATGATTGA--G-TTA-TG--AACTT-GGTTAGAAAA-CCTAGCTATTTG-A--CTAGGT-CAGTGG-TATTGGGTA-GG-TTTCAA-T-C--CAGC--TTCC-GATTCAC-AA--TTTA-A-A-------TATATT-----ATAAGGAAT--T-ATAAGATA-TGATACA-A-TGATATGA--A-AA--CT-AA-TACCCAAACTCGTT
gi|6 : GTGCAAGCC-GTAG-TTCCTCA--TTTTAGA-CTGAGCT-AC-TTGC-T--CAAAAT-AA-T-GATTTCGT--GTTGTGGGTTC-TC-TCGG-C-TTTAT-TCCGC-ATAGTTTAAAC-AG-TGATT-GGAT-GGT-AAAA--TGAT-T-TG-AGACAAG--ATG-ATAGATTAAAA-GAT--T-ATTTA--TACTT-TC-CACG-ACG-------CAATCCA-ATTTC-ACGGTA-TA-ATTA--T-A-ACAAACA--TTTAATCA-ACTCAAAATT-ACTC-GACTTC---------CAA---TTACT-CAG-TG---T---T--T--ATATAC-T-GCCTCAA-----AA-----AT--A-TCT--GCTCA-TT-TAA-CTCAAT----TTG---TA-TAA--T-GGG-A--AA--AA-C--TATAA-TAGAAG-T-AA----GGT-G---TATGT---AGCAAT-G-T--C--TCATTCCTATCTAAA---TA-T-TTAATTAAAATTGTTTTA-TA-TG-AC-TTTTGAT-----A----A--AGC-T-T-A-----CA-GCTC-CA-C-G-TC--TA-TATC-C-TTAC----AT--TGTTT-A-C---GTTT-TC-TCT--TTAGCC-GATGCTTGTTG--C-TG-CAACATTG-AGTT-G-T-A--GA-CTTGA--CTTGGTT--ACGGT-TATTTAT--T-CCT-CTGCTTC-GACTC-CGA----TGCTGGATAATGATT-AGCG-TTATTG--A--TT-GGTTAA-AAAGTCTAACTATTTG-AAGTG-GGT-C-GT-G-TATT-GGTA-GG-TTTC-A-T-C--CA-C--CTTCTGATTCACTAA--CTTA-A-ACT-----TATAAT-----T-AAGGAAT-CT-ATAAGAAG-ATATACACACTG--ATGA----AA--AT-AA-TA-TCAAACTCGTT
gi|4 : GCAA-CC-TTAGATTTCTCAAGTTT-AGA-CTGAGCT-AC-T-TCGT--CAAAAT-AAGT-GATT-CGTCAATTGTGG-TTC-TC-T-GG-CGTTTAT-TC-GAGATATAT-GAAC-AA-CGGCT-G-AG-G-T-AAAAACTGAT-TCTG-AGACAATGAATG-T-AGATCAAAATGAT----ATT-A--T--TT-AC-TACG-AAG-------CAATCCATATG-C-AGG-TA-TA-ATTA--T-AAGCAAA-A--TTCAATCG-ACTCAAAATT-CCTC-AACTTCAA-TTAC-TCAAAA-T-GCT-CGA-TG---T---T-ATG-ATAT-C---GC-TTCA-----AT------TT-ACTCT--GCTCAATT-CGA-CTCAAT----TTGGAATA-TA---T-GAG-A--A------C--TATAC-TAGAAG---AAG---GAT-GA--TA-GT-G-AGCAAT-G-G--TGGTCATTCCTCTTTAAAAAGTAAT-TTGATAGC-----TTCTTTTACTG-AC-TTTGTATA-GG-A----A--AGATC-T-ATAT--CG-GC-T-CA-C-G-TC--TA-TA-C-CATTA---A-AT--CA-CT-A-AT--GTTT-TC-TC--CATACCG--ATG-TTGTCC--T-CGTCAAGAATG-GA-T-G-T-A--GA-C--GA--CGGGTTTC-ACG----ATTATT-AC-TCTACTGCTTC-G-CTC-CGA----T--TGGATAA-GATTGAGCGTTTA-TG--A--AT-GGTTAG-AAA-CCTAGCTATTTG-A--TT-GGTACAGT-G-TATTAGGTAGCG-TTTCAACT-C--CA-C--TTCC-GATTTAC-AA---TTA-A-AC------TACATT-----A-AGGAAAT-AT-ATAAGAT--ATATACACA-TG--ATGATGAAAA--AT-AA-TA-CCAAACTCGTT
gi|16 : gGCAA-AC-GTAG-TTTCTCAA-TTT-AGA-TTGAGCT-AT-TTGC-T--CAAAAT-AA-T-TATT-TGT--GTTGTGGGTTC-TT-TCAG-T-TTCAT-TCCGGTGT-ATT-GAAC-AG-CGATT-
gi|10 : AG-TTTCTCAA-TTT-AGA-CTGAGCT-AC-TTGC-T--CAAAAT-AA-T-GATT-CGT--GTTGTGGGTTC-TC-TTGG-C-TTTAT-TCCGAGATA-TT-GAAC-AG-CGATT-G-AT-GGT-AAAA--TGAT-T-TG-AGACAA----TGATTAGATCAAAATGAT--T-ATTTA--T--TTTAC-CACG-AAGGCGGAAGCAATCCA-AT--C-ACG-TA-TA-ATTT--T-A-ACAAA-A--TTTAATCA-ATTCAAAATT-ACTC-A-TTTCAA-TTAC-TCAATA-TTGCT-CAA-TG---T---T------TAT-C-A-AG-T-AA-----ATAATCAATA-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-T-AAAT-GAG-A--AA--AA-CTATATAA-TAGAAG-T-AAT---GGT-GC--TA-
gi|8 : -T-GC-T--CAAA-T-AA-T-GATT-CGT--GGTGAGGGTTC-TC-TCGG-C-TTTAT-TCCGAGAT-CTT-GAACAA--CAATT-G-AG-CGTAAAAA--TGAT-T-TG-AGAACA---ATGATTAGAT-AAAATGAT--TAATCTAT-T--TT-ATACACGAAAG-------CAATCC--AT--CAACG-T--TA-ATTA--T-A-AC-AA-A--TTC-ATCGAACTCAAAATT-ACTT-CACTTCAAGTTAC-TCAAAA-TT-CT-CAA-TG---T---T------TTT-CTT-GC-TC-A-----AT-----ATT-A-TAT--GCTCAATT-TG--------------G---TA-T-AAAT-GAG----AA--AA-C--TATAACTAGAAG-T-AAG---GGT-GC--TA-GTCG-AGCAAT-G-T--C--TTATTCCTATCTATA--GTA-T-TTAAT-AAAACTATTTT-TTTCTG-AC-TTTGTATA-GG-A----A--AGG--------------------A-C---TC--TACTA-C-C-TTCA--A-AT--TG-CT-A-A---GTGT-TC-TCTCTTC--CG-GATG-TTGTCT--CTTGTCA--GATG-AG-T-G-TGG--GA-C-TGA--CTTGGTT--ACGG--TATTTAT-AC-CCTACTGCTTTGG-CCCGCGC----T--TGA--AATATTTGAGCG-TTA-TGAAA--TG-GTT--G-AAA-TCTAGC-ATTTG----TT-GGT-CAGT-G-TATT-GGTA-GG-TTTCAA-TCC--CA-C--TTCTGTATTCAC-AA--CTT--A-AC------TA---T-----A-AAAGAAT-A-----AAATG-AT--------TG--A-------AA--ATCAA-TA-CCAAACTCGTTacgttattttattattgacttggtaaaggaaagacttgttcagtcacgtctataccttacaattgttaggatgttatctcggtcacgacagagtatagactgacttggttcacag
gi|12 : act-AAG-------CAATCCA-AT--C-ACG-TA-TA-ATTA--T-A-ACACA-T--TTCTTTCA-ACTCCAAATT-ACTC-A-CTTCAA-TTAC-TCAATA-TTGCT-CAA-TG---TTTAT-AT--ATAT-A-T-AC-TCAA-----AG-----CTT-A-TCT--GTTCAATT-CGA-TTCAAT----TTG---TA-T-AAAT-GAG---------------------AAAAG-T-AAG---GGT-GC--TA-GT-G-AGCTAT-G-T--C--TCATTCCTATCTAAA--GTA-t
gi|9 : A-AT--C-ACG-TA-TA-ATTA--T-A-ACAAA-A--TTCAATTG-GCTCAAAATT-ACTC-A-CTTCAA-TTAC-TCAGAA-TTACG-CAA-TGT--T---T-AT--ATTT-C-T-GC-TCAA-----AT-----ATT-A-TTT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAATT-GAGAA--AA--AA-C--TATAA-TAGAAG-T--AG---GGT-GC--TA-GT-GAAGCAAT-G-TCAC--TCA-TCCTATCT-AA--GTA-T-T---TAAAAATAATTTT-TTACTG-AC-TTTGTATA-GG-AAATTA--AGA-C-T-AT-T--C--A--T-CAGC-G-TC--T--TA---C-TTAC--A-ATTCTG-CTCA-A---ATTT-TC-TCT-CTTAACG-GATG-TTGTCT--C-TGTCACGAATGAAG-T-G-T-T--GA-C-TGA--CTTGGTTC-ACCG--TATTTAT-AC-CCTACTGCTTC-GTTCC-CGA----T--TGGAT-ATGATTGAGCG-TTA-TG--A--TTGGGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTA-GG-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TGTATTA----A-AAGGAAT-AT-ATAAGAT--ATATACACA-TG--ATGA----AA--ATCAA-TA-CCAAACTCGT
gi|15 : -T-GC-TCAATGTTTAT-----AT--A-TCT--GCTCAATT-CAA-CTCAAT----TTG---TA-TCAA-T-GAG-A--AA--AA-C--TATTA-TAGAAG-T-AAG---AGT-GA--TA-GT-G-AGCAAT-G-T--C--TCATTCCTATC
gi|3 : tAAG-T-ATA---GAC-GT--GA-CT-G-AATAA--G-T--C--T--TTCCTATACAAA--GTC-CAGTAATAAAA-TAATTTTATTAAAT-AC-TTTAGATA-GG-A----ATGAGA-CAT-GC-T--CACA--G-CA-A-C-CC--T--TA-T-C-TT-C--T-AT--T---T-ATA---GTTT-T--TCTCATTc
gi|10 : cgtgcaaccgtagtttctcaatttagactgagctacttgctcaaactaatgattcgtgtggtgggttctctcggctttattccgagatattgaacagacgatttgagtggtaaaatgatttgagacaatgattagatcaaaatgattattttaccagaaagcaattcaatcacgtataattataacaaaattaatcgactcaaaatcactcacttcaattactcaaaattgctcaaatgtatattaatatctgctcaaacaatatctgctcaattcgactcaatttgtataTTATTTTATTATTG-AC-TTGGTAAA-GG-A----A--AGA-C-TTGT-T--CA-G--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-AT--TG-TT-A-----------------------G-GATG-TTATCT--C-GGTCACGACAG-AG-T-A-T-A--GA-C-TGA--CTTGGTTC-ACAG--gctaagcagctaagttttctctccttaccggatgttgtatctgttacgaatgagtgtagactgacttggttcacggtgtttataccctactgcttcgccccgattggataatgattgatcgttacgattggttagaaatctagctatttgattggtcagtgtattggtaggtttcaatccacttccggattcacaatttaaattacatgtatatcaaaggaatatataagatatatacacatgatgaaaactaataccaaactcgtt
gi|11 : agtttctcaatttagactgagctacttgctcaaaataatgattcgtgttgtgggttctcttggctttattccgagatattgaacagcgattgatggtaaaatgatttgagacaatgattagatcaaaatgattatttattttaccacgaaggcggaagcaatccaatcacgtataattttaacaaaatttaatcaattcaaaattactcatttcaattactcaatattgctcaatgtttatcaagtaaataatcaataatctgctcaattcgactcaatttgtataaatgagaaaaactatataatagaagtaatggtgctaacgTG-AC-TTTGTATA-GG-A----A--AGA-C-TTAT-T--CA-G--T-CA-C-G-TC--CA-TA-A-C-TTTC--A-AT--TC-CT-A-C---GTTT-TC-TCTTCTTATTG-GATG-TTTTCT--C-TGTCATGATTG-AT-T-G-T-A--GA-C-TAA--CTTGGTTC-ACGG--TATTTAT-AC-CCTACAGCTTC-G-CTC-CGA----T--TGGATAATGATTGAGCG-TTA-TG--A--TT-GGAAAA-AAA-TCTTGTTGTTTG-A--TT-AGT-CAAT-G-TATT-GGTA-GG-TTTCAA-T-C--CG-C--TTCCTGATTCAC-AA--CTTA-A-AC------TATATC-----A-AAGGAAT-ATAATAAGA-A-ATATATACA-TG--ATGA--AAAA--AG-TA-TA-CCAA
gi|13 : tTTC-ACAG--TATTTAT-AC-CCTACAGCCTC-G-CTC-CGA----T--TGGATAATGATTGAGCG-TTA-TG--A--TT-GGTTAA-AAA-TCTAGTTATTTG-T--TT-GGT-CAGT-G-TATT-GGTA-GG-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGGAT-AT-AT----T-------CACA-TG--AT-A--AAAA--GC-AA-TA-CCAAACTCGTTcttctt
gi|14 : C-CGA----T--TGGATAATGATTGAGCG-TTA-TG--A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTA-GG-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATATATATACACA-TG--ATGA--A-AA--AT-AA-TA-CCAAACTCGT
gi|18 : --CA-C--TTCCGGATTCAC-AA--TTTA-A-AC------TATATC-----A-AAGGAAT-AT-ATAAGA-A-TTTTATACA-TG--ATGA--AAAATTAT-AA-TA-CTAAATTCGTT
gi|20 : -A-AC------TATATT-----A-AAGGAAT-AT-ATGAGAT--ATAGGCACA-TG--AT-A--TGAA--AT-AA-TA-CCAAACTCGTT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|22 ): ATAACTCGTACAAGAAATGACTAACAAATAT
Alignments
lowQualScore : 11 1111 111 1111111 11 222222222 111111 1 11 1 1111 111111111 111111 11111 2222 11111
lowQualScore : 4 4 4 4 3 55 3 3 3 3 3 55 3 3 3 3 3 3 3 3 33 3 99 8 4 4 66 4 4 4 4 5555 1 0 7777 666 66 4 4444444 8 3 55 3 3 3 3 3 55 3 3 3 00 3 3 3 3 3 3 3 3 3 2 3 3 555 333333333 3 555 3 000000 3 3 44 3 3 7777 999 3 1 3 3 44 44 6 44 6 3 3 6666 3 777 3 3 3 3 3 3 55 55 4 7 66 3 7 3 3 3 7777 7 4 3 55 999 3 3 3 3 55 3 3 777 55 3 55 3 3 2222 3 3 888888888 3 55 3 7 3 3 3 3 3 55 3 3 55 3 888 3 3 3 3 3 3 7777 44 3 3 3 44 3 3 3 8888 3 3 3 3 6 3 3 3 3 44 3 44 5 3 44 2 2 111111 00000 2 2 2 0000 5 77777 33 2 2 2
lowQualScore : . . . . . .. . . . . . .. . . . . . . . . .. . .. . . . .. . . . . .... . . .... ... .. . ....... . . .. . . . . . .. . . . .. . . . . . . . . . . . . ... ......... . ... . ...... . . .. . . .... ... . . . . .. .. . .. . . . .... . ... . . . . . . .. .. . . .. . . . . . .... . . . .. ... . . . . .. . . ... .. . .. . . .... . . ......... . .. . . . . . . . .. . . .. . ... . . . . . . .... .. . . . .. . . . .... . . . . . . . . . .. . .. . . .. . . ...... ..... . . . .... . ..... .. . . .
lowQualScore : 4 4 0 0 6 00 6 6 6 6 6 00 6 6 6 6 6 6 6 6 66 6 44 0 4 4 11 4 4 4 6 8888 9 1 0000 999 11 4 4444444 0 6 00 6 6 6 6 6 00 6 6 6 00 6 6 6 6 6 6 6 6 3 3 3 3 888 111111111 3 999 3 888888 3 3 66 3 3 1111 222 3 3 3 3 66 66 7 66 7 3 3 2222 3 111 3 6 6 6 6 6 00 55 0 4 66 4 3 6 6 6 7777 3 5 6 00 222 6 6 6 6 00 6 6 888 00 6 00 6 6 0000 6 6 777777777 6 00 6 4 6 6 6 6 6 00 6 6 00 3 333 6 6 6 6 3 3 1111 66 3 3 3 66 3 3 3 5555 3 3 3 3 7 3 3 3 3 22 1 22 4 1 22 9 9 111111 00000 9 9 9 9999 7 55555 99 9 9 9
consensus : AACGTGCAA-CC-TTAG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAG-CGATT-GAG-GGT-AAAA--TGAT-T-TGA-GACAA---ATGATTAGATCAAAATGAT--T-ATTTA--T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TTCAATCG-ACTCAAAATT-AC-TC-A-CTT-CAA-TTAC-TCAAAA-TTGCT-CAA-TG---T---T-AT--ATAT-C-T-G-CTCAAAT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAGA--AA--AA-C--TATAA-TAGAAG-T-AAG---GGT-GC--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-AAA----GA-CT-AT-T--CAG--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-CT-AA---GTTT-TC-TCTCCTTA-C--GGATG-TTGTCT--C-TGTCACGAATGA-G-T-G-T-A--GA-C-T--GACTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATA-ATATACACA-TGATG-A--AAAA--AT-AA-TA-CCAAACTCGTT
Reference ( family-5383 ) : AACGTGCAA-CC-TTAG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAG-CGATT-GAG-GGT-AAAA--TGAT-T-TGA-GACAA---ATGATTAGATCAAAATGAT--T-ATTTA--T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TTCAATCG-ACTCAAAATT-AC-TC-A-CTT-CAA-TTAC-TCAAAA-TTGCT-CAA-TG---T---T-AT--ATAT-C-T-G-CTCAAAT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAGA--AA--AA-C--TATAA-TAGAAG-T-AAG---GGT-GC--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-AAA----GA-CT-AT-T--CAG--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-CT-AA---GTTT-TC-TCTCCTTA-C--GGATG-TTGTCT--C-TGTCACGAATGA-G-T-G-T-A--GA-C-T--GACTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATA-ATATACACA-TGATG-A--AAAA--AT-AA-TA-CCAAACTCGTT
gi|1 : CGTGCA---C-TAGG-TTTTCCAA-TTTAGACTGAGCT-A-TTGCTGCCAAAAT-AA-T-GA-TT-CGT--GTTGT-GAGTTC-TC-TCG----CTT-ATGTCCGAGA-TATTT-TGAACAA-CGATT-GAG-GGT--AAA--TGAT-T-TGA-GAC-A---ATGATTAGATCAAAATGATTGT-ATTTA--T--TTAC-CAC-------GTAAGC--TCCA-A--T-C-AC--T-A-TAATTA--T-AA-CAAA-AATTTCAATCG-ACTCAAAATT-A--TC-A-CTT-CAA-TTACGTCAAAATTTGCTCCAA-TGTATT---T-AT--ATAT-C-TGG-CTCAAAT-----ATTAA-TCT--GCTCAATA-CGATCTCAATTTTGTTG---TA-TCCAAT-GAGACGAAATAA-C--TAAAA-TAAGAG-TCAAGTTCGGT-GCATTG-GT-G-A-GCAAT-G-TCTATCATT-CTATCTAAA--GTA-TTTAAT-AAATTTATTTTATTACTG-AC-TTTGTATA-GATAAA----TG-CT-AT-TCCCAG--TACA-C-G-TTCATA-TA-C-C-CCAC--ATATT--G-CT-AAAGTATTT-TCATCTCCTTA-CCGAGATG-TTGTCTTCT-TGTCAAGAATGA-G-T-GCT-ACGAA-C-TTGAACTTGGTTCAACGGGATATTTATGAC-CCTACTGCTTC-G-CTC-C-GAATTGT--TGACTAATGATTGAGCG--TA-TG-A--TT-GGTTAG-AAA-TCTAGCTCTTTGTA--TT-GGT-CAGT-G-TATT-GGTAT-G-TTTCAA-T-CCACA-C--TTCC-GATTCAC-AATTTTTATA-AC------TATATT-----A-CAGGAAT-AT-ATAGGAT--ATATACACATTGGTG----AAAA--AT-AA-TA-
gi|10 : AG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTC-TC-TTGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAG-CGATT-GAT-GGT-AAAA--TGAT-T-TGA-GAC-A---ATGATTAGATCAAAATGAT--T-ATTTAT-T--TTAC-CACGAAGGCGG-AAGCAATCCA-A--T-C-AC-GT-A-TAATTT--T-AA-CAAA-A--TTTAATCA-ATTCAAAATT-AC-TC-A-TTT-CAA-TTAC-TCAATA-TTGCT-CAA-TG---T---T------TAT-C-A-A-GT-AAATAATCAATA-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-T-AAAT-GAGA--AA--AA-CTATATAA-TAGAAG-T-AAT---GGT-GC--TA-
gi|10 : TTATTTTATTATTG-AC-TTGGTAAA-GG-AAA----GA-CTTGT-T--CAG--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-TT-A------------------------GGATG-TTATCT--C-GGTCACGACAGA-G-T-A-T-A--GA-C-T--GACTTGGTTC-ACAG--acgttattttattattgacttggtaaaggaaagacttgttcagtcacgtctataccttacaattgttaggatgttatctcggtcacgacagagtatagactgacttggttcacag
gi|11 : agtttctcaatttagactgagctacttgctcaaaataatgattcgtgttgtgggttctcttggctttattccgagatattgaacagcgattgatggtaaaatgatttgagacaatgattagatcaaaatgattatttattttaccacgaaggcggaagcaatccaatcacgtataattttaacaaaatttaatcaattcaaaattactcatttcaattactcaatattgctcaatgtttatcaagtaaataatcaataatctgctcaattcgactcaatttgtataaatgagaaaaactatataatagaagtaatggtgctaacgTG-AC-TTTGTATA-GG-AAA----GA-CTTAT-T--CAG--T-CA-C-G-TC--CA-TA-A-C-TTTC--A-ATT--C-CT-AC---GTTT-TC-TCTTCTTA-TT-GGATG-TTTTCT--C-TGTCATGATTGA-T-T-G-T-A--GA-C-T--AACTTGGTTC-ACGG--TATTTAT-AC-CCTACAGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGAAAA-AAA-TCTTGTTGTTTG-A--TT-AGT-CAAT-G-TATT-GGTAG-G-TTTCAA-T-C--CG-C--TTCCTGATTCAC-AA--CTTA-A-AC------TATATC-----A-AAGGAAT-ATAATAAGA-A-ATATATACA-TGATG-A--AAAA--AG-TA-TA-CCAA
gi|12 : t-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AA-CACA-T--TTCTTTCA-ACTCCAAATT-AC-TC-A-CTT-CAA-TTAC-TCAATA-TTGCT-CAA-TG---TTTAT-AT--ATAT-A-T-A-CTCAAAG-----CTT-A-TCT--GTTCAATT-CGA-TTCAAT----TTG---TA-T-AAAT-GAGA--A------------------AAG-T-AAG---GGT-GC--TA-GT-G-A-GCTAT-G-TC--TCATTCCTATCTAAA--GTA-cttctt
gi|13 : TTC-ACAG--TATTTAT-AC-CCTACAGCCTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAA-AAA-TCTAGTTATTTG-T--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGGAT-AT-AT----T-------CACA-TGAT--A--AAAA--GC-AA-TA-CCAAACTCGTT
gi|14 : C-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATATATATACACA-TGATG----AAAA--AT-AA-TA-CCAAACTCGT
gi|15 : -TTGCT-CAA-TG---T---T--T--ATAT-----------------------A-TCT--GCTCAATT-CAA-CTCAAT----TTG---TA-TCAA-T-GAGA--AA--AA-C--TATTA-TAGAAG-T-AAG---AGT-GA--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATC
gi|16 : GCAA-AC-GTAG-TTTCTCAA-TTTAGATTGAGCT-ATTTGCT--CAAAAT-AA-T-TA-TT-TGT--GTTGT-GGGTTC-TT-TCAG-T-TTC-AT-TCCGGTG-TA--T-TGAACAG-CGATT-c
gi|18 : --CA-C--TTCCGGATTCAC-AA--TTTA-A-AC------TATATC-----A-AAGGAAT-AT-ATAAGA-A-TTTTATACA-TGATG-A--AAAATTAT-AA-TA-CTAAATTCGTT
gi|19 : CTTGCT--CAAAAT-AA-T-AA-TT-AGT--GATGT-GGGTTC-TC-TCGC-C-TTT-AT-TCCGAGA-TA--T-T
gi|2 : tgtaacgtgcaatcgcagattAACGTGCAA-CCCTTAC-GTTCTCAA-TTTAGACTGAGCTTACTTGCT--CAAAATTAA-TTGA-TTTCGT--GT-GTAGGGTTA-TC-TCGTTC-TTT-AT-TCCGACG-TA--T-TGAACAA-CGATT-GAG-GGT-AAAA--TGATAT-TGA-GACAA----TGATTAGATCAAA-TGAT--T-ATTT---T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GTTA-TA-TTA--TTAA-CAAA-AATTTCAATCG-ACTCAAAATTTAC-TC-A-CTTTCAA-TTAC-TCAAAA-T-GCT-CA--TG---T---TTAT--ATAT-C-T-G-CTCAAAA-----ATT-A-TCTTTGTCCAATT-CGA-CT-AAT------A---TAGTAAAAT-GAGA--AA--AAAC--TATAA-TAGAAG-T-AAG---GGT-G---TATGT---A-GCAATTG-T---TCATTCCTATCTAAA--GTA-TTTA-TAAA--TTATTTTATTACTGGAC-TTTGT-TA-GG-AAA----GA-CTTAT-T--CAG--T-CA-C-GGTC--TA-TA-C-C-TTAC--A-ACT--G-CT-TA---GTTTATC-TCTC-TTA-C--G-ATG-T-GTCT--C-TGTCA-GAATGA-G-TCA-T-A--GA-C-T--GACT--GATC-ACG---TATTTAT-ACACCTACTGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA--CTAGCTATTTG-AC-TT-GGT-CAGT-GTTAT---GTAG-GATTTCAA---C--CA-CTTTTCCGATTTCAC--A--TTTA-ATAC------TATATTAGGAAA-AAAAAATAAT-ATAAGATA---ATACACC-TGATG-A--AAAA--TT-AATTA-CCAAACTCGTT
gi|20 : tgt-A-AC------TATATT-----A-AAGGAAT-AT-ATGAGAT--ATAGGCACA-TGAT--A--TGAA--AT-AA-TA-CCAAACTCGTT
gi|21 : AACGAGCAA-CC-TT-G-TTTCTCAA-TTTAGACTGAGCT-At
gi|3 : attgtaCGTGCAA-CC-GTAG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAACT-AA-T-GA-TT-CGT--GTGGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAGACGATTTGAGTGGT-AAAA--TGAT-T-TGA-GACAA----TGATTAGATCAAAATGAT--T-ATTT-------TAC-CAG-------A-AAGCAATTCA-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TT-AATCG-ACTCAAAATC-AC-TC-A-CTT-CAA-TTAC-TCAAAA-TTGCT-CAAATG---TA--T-ATTAATAT-C-T-G-CTCAAAC-----AAT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAA-T-GAGA--AA--AA-C--TATAAATAGAAGAT-AAG---GGTTGC--T--GT-G-A-GCA-T-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAA-TTATTTTATTACTGGAC-TTTGTATA-GG-AAA----GA-CTTAT-T--CAG--T-CA-C-G-TC--TA-TA-C---TTGCTAA-GCA--G-CT-AA---GTTT-TC-TCTCCTTA-CC-GGATG-TTGTAT--C-TGTTACGAATGA-G-T-G-T-A--GA-C-T--GACTTGGTTC-ACGG--TGTTTAT-AC-CCTACTGCTTC-G-CCC-C-GA----T--TGGATAATGATTGATCG-TTA-CG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--TTTA-A-ATTACATGTATATC-----A-AAGGAAT-AT-ATAAGAT--ATATACACA-TGATG----AAAA--CT-AA-TA-CCAAACTCGTTgct
gi|4 : GCAA-CC-TTAGATTTCTCAAGTTTAGACTGAGCT-ACTTCGT--CAAAAT-AAGT-GA-TT-CGTCAATTGT-GG-TTC-TC-T-GG-CGTTT-AT-TC-GAGA-TA--TATGAACAA-CGGCT-GAG-G-T-AAAAACTGAT-TCTGA-GACAATGAATG--TAGATCAAAATGAT----ATT-A--T--TTAC-TAC-------G-AAGCAATCCATA--TGC-AG-GT-A-TAATTA--T-AAGCAAA-A--TTCAATCG-ACTCAAAATT-CC-TC-AACTT-CAA-TTAC-TCAAAA-T-GCT-CGA-TG---T---T-ATG-ATAT-C---G-CTTCAAT------TT-ACTCT--GCTCAATT-CGA-CTCAAT----TTGGAATA-TA---T-GAGA--A------C--TATAC-TAGAAG---AAG---GAT-GA--TA-GT-G-A-GCAAT-G-GTGGTCATTCCTCTTTAAAAAGTAATTTGATAGC-----TTCTTTTACTG-AC-TTTGTATA-GG-AAA----GATCT-ATAT--CGGC-T-CA-C-G-TC--TA-TA-C-CATTA---A-ATC--A-CT-AAT--GTTT-TC-TC--CATA-C--CGATG-TTGTCC--T-CGTCAAGAATGG-A-T-G-T-A--GA-C----GACGGGTTTC-ACG----ATTATT-AC-TCTACTGCTTC-G-CTC-C-GA----T--TGGATAA-GATTGAGCGTTTA-TG-A--AT-GGTTAG-AAA-CCTAGCTATTTG-A--TT-GGTACAGT-G-TATTAGGTAGCG-TTTCAACT-C--CA-C--TTCC-GATTTAC-AA---TTA-A-AC------TACATT-----A-AGGAAAT-AT-ATAAGAT--ATATACACA-TGATG-ATGAAAA--AT-AA-TA-CCAAACTCGTT
gi|5 : gAACGTGCAA-CC-TTAG-TTTCTCA--TTTAGACTGAGCT-ACT-GCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTCGTC-TCGG-C-TTT-AT-TCCGAGA-TAA-T-TGAACA--CGATT-GAG-GGT-AAAA--TGAT-T-TGA-GACAA---ATG-TTAGATCAAAATGAT--T-ATTTA--T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AT-CAAA-A--TTCAATCG-ACTCAAAATT-AC-TC-C-CTT-CAA-TTAC-TCAAAA-TTACT-CAA-TG---T---T-AT--ATAT-C-T-G-CTCAAAT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAGA--AA--AA-C--TATAA-TAAAAG-T-AAG---GGT-GC--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-AAA----GA-CT-AT-T--CAA--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-CT-AA---GTTT-TC-TCTCCTTAGC--GGATG-TTGTCT--C-TGTCAAGAATGA-G-T-G-T-A--GA-C-T--GGCTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CCC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GTTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-C-GT-G-TATT-GGTAT-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATGAGATA-ATATACACA-TGATG-A--AGAA--AT-AA-TA-CCAAACTCGTT
gi|6 : GTGCAAGCC-GTAG-TTCCTCAT-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GATTT-CGT--GTTGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCG-CA-TAGTT-TAAACAG-TGATTGGAT-GGT-AAAA--TGAT-T-TGA-GACAAG--ATGA-TAGATTAAAA-GAT--T-ATTTA--TACTTTC-CAC-------G-ACGCAATCCA-ATTT-C-ACGGT-A-TAATTA--T-AA-CAAACA--TTTAATCA-ACTCAAAATT-AC-TCGA-CTT-C------C-----AA-TTACT-CAG-TG---T---T--T--ATATAC-T-GCCTCAAA------AAT-A-TCT--GCTC-ATT-TAA-CTCAAT----TTG---TA-T--AAT-GGGA--AA--AA-C--TATAA-TAGAAG-T-AA----GGT-G---TA--T-GTA-GCAAT-G-TC--TCATTCCTATCTAAA---TA-TTTAATTAAAATTGTTTTA-TA-TG-AC-TTTTGAT-----AAA----GC-TT-A-----CAGCTC-CA-C-G-TC--TA-TATC-C-TTAC----ATT--GTTT-AC---GTTT-TC-TCT--TTAGC--CGATGCTTGTTG--C-TGCAAC-ATTGA-GTT-G-T-A--GA-CTT--GACTTGGTT--ACGGT-TATTTAT--T-CCT-CTGCTTC-GACTC-C-GA----TGCTGGATAATGATT-AGCG-TTATTG-A--TT-GGTTAA-AAAGTCTAACTATTTG-AAGTG-GGT-C-GT-G-TATT-GGTAG-G-TTTC-A-T-C--CA-C--CTTCTGATTCACTAA--CTTA-A-ACT-----TATAAT-----T-AAGGAAT-CT-ATAAGAAG-ATATACACACTGATG-----AAA--AT-AA-TA-TCAAACTCGTT
gi|7 : CGTGCAA-CG-T-AG-TTT-TCAA-TTAGAACTGAGCT-ACTTGCT---AAAAT-AA-T-GA-TT-CGT--GTGGT-GGGTTC-TCATCGG-C-TTTTAT-TC-GAGAATA--T-TGAACAGGCGATT-GAG-GGT-AAAA--TGAT-T-TGAAGACAA---GTGATTAGATAAAAATGAT--T-ACTTATTT--TTAC-CAC-------G-AAGCAATCCA-A--T-T-AC--T-ATTAATTAGTT-AA-C-AA-A--TTCAATCG-GCTCAAAATT-AC-TC-A--TT-C-A-TT---TC-----TT--T-C---------------------T-C-T-G-CTCAAAT-----ATT-A-ATT--GCTCAATTCCAA-CTCAAT----TTGA--TA-TAAAATGGAGA--AA--AA-A--TATAA-TAGAAG-T-AA----GGT-GC--TA-GT-G-A-GCAAT-GCTC--TCATTCCTATCTACA--GTA-TT---TAAAAATTATTTTATTACTG-ACATTTGTATACGG-AAA----GATTT-AT-T--CAC--T-CA-CGG-TC--TA-TT-CGT-TTAC--A-ATT--G-C-------------C-T--------------TG-TTGTCT--C-TGTCACGAATGA-G-T-G-T-A--GATC-T--GACTTGGTTC-ACGT--TATTTAT-A--CCTACTG-TTC-G-CT--C-GA----T--TGGATAATGATTGA--G-TTA-TG-AACTT-GGTTAGAAAA-CCTAGCTATTTG-A--CTAGGT-CAGTGG-TATTGGGTAG-G-TTTCAA-T-C--CAGC--TTCC-GATTCAC-AA--TTTA-A-A-------TATATT-----ATAAGGAAT--T-ATAAGATA-TGATACA-A-TGATATG--AAAA--CT-AA-TACCCAAACTCGTT
gi|8 : -ACTTGCT--CAAA-T-AA-T-GA-TT-CGT--GGTGA-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TC--T-TGAACAA-CAATT-GAG-CGTAAAAA--TGAT-T-TGA-GAACA---ATGATTAGAT-AAAATGAT--TAATCTAT-T--TTATACAC-------GAAAGCAATCC--A--T-CAAC-GT---TAATTA--T-AA-C-AA-A--TTC-ATCGAACTCAAAATT-ACTTC-A-CTT-CAAGTTAC-TCAAAA-TT-CT-CAA-TG---T---T------TTT-CTT-G-CTC-AAT-----ATT-A-TAT--GCTCAATT-TG--------------G---TA-T-AAAT-GAG---AA--AA-C--TATAACTAGAAG-T-AAG---GGT-GC--TA-GTCG-A-GCAAT-G-TC--TTATTCCTATCTATA--GTA-TTTAAT-AAAACTATTTT-TTTCTG-AC-TTTGTATA-GG-AAA----GG------------------A-C---TC--TACTA-C-C-TTCA--A-ATT--G-CT-AA---GTGT-TC-TCT-CTTC-C--GGATG-TTGTCT--CTTGTCA--GATGA-G-T-G-TGG--GA-C-T--GACTTGGTT--ACGG--TATTTAT-AC-CCTACTGCTTTGG-CCCGC-GC----T--TGA--AATATTTGAGCG-TTA-TGAA--AT-GGTT-G-AAA-TCTAGC-ATTTG----TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-TCC--CA-C--TTCTGTATTCAC-AA--CTT--A-AC------TA---T-----A-AAAGAAT-A----AA-------------A-TGATT-G--AAAA--TC-AA-TA-CCAAACTCGTT
gi|9 : A-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TTCAATTG-GCTCAAAATT-AC-TC-A-CTT-CAA-TTAC-TCAGAA-TTACG-CAA-TG---T---TTAT--ATTT-C-T-G-CTCAAAT-----ATT-A-TTT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAATT-GAGA--AA--AAAC--TATAA-TAGAAG-T-A-G---GGT-GC--TA-GT-G-AAGCAAT-G-TCACTCAT-CCTATCTAA---GTA-TTTAA---AAATAATTTT-TTACTG-AC-TTTGTATA-GG-AAATTAAGA-CT-AT-T--CA---T-CAGC-G-TC--T--TA-C---TTAC--A-ATTCTG-CTCAA---ATTT-TC-TCTCTTAA-C--GGATG-TTGTCT--C-TGTCACGAATGAAG-T-G-T-T--GA-C-T--GACTTGGTTC-ACCG--TATTTAT-AC-CCTACTGCTTC-G-TTC-CCGA----T--TGGAT-ATGATTGAGCG-TTA-TG-A--TTGGGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TGTATTA----A-AAGGAAT-AT-ATAAGAT--ATATACACA-TGATG-----AAA--ATCAA-TA-CCAAACTCGTt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|22 ): ATAACTCGTACAAGAAATGACTAACAAATAT
Alignments
lowQualScore : 11 1111 111 1111111 11 222222222 111111 1 11 1 1111 111111111 111111 11111 2222 11111
lowQualScore : 4 4 4 4 3 55 3 3 3 3 3 55 3 3 3 3 3 3 3 3 33 3 99 8 4 4 66 4 4 4 4 5555 1 0 7777 666 66 4 4444444 8 3 55 3 3 3 3 3 55 3 3 3 00 3 3 3 3 3 3 3 3 3 2 3 3 555 333333333 3 555 3 000000 3 3 44 3 3 7777 999 3 1 3 3 44 44 6 44 6 3 3 6666 3 777 3 3 3 3 3 3 55 55 4 7 66 3 7 3 3 3 7777 7 4 3 55 999 3 3 3 3 55 3 3 777 55 3 55 3 3 2222 3 3 888888888 3 55 3 7 3 3 3 3 3 55 3 3 55 3 888 3 3 3 3 3 3 7777 44 3 3 3 44 3 3 3 8888 3 3 3 3 6 3 3 3 3 44 3 44 5 3 44 2 2 111111 00000 2 2 2 0000 5 77777 33 2 2 2
lowQualScore : . . . . . .. . . . . . .. . . . . . . . . .. . .. . . . .. . . . . .... . . .... ... .. . ....... . . .. . . . . . .. . . . .. . . . . . . . . . . . . ... ......... . ... . ...... . . .. . . .... ... . . . . .. .. . .. . . . .... . ... . . . . . . .. .. . . .. . . . . . .... . . . .. ... . . . . .. . . ... .. . .. . . .... . . ......... . .. . . . . . . . .. . . .. . ... . . . . . . .... .. . . . .. . . . .... . . . . . . . . . .. . .. . . .. . . ...... ..... . . . .... . ..... .. . . .
lowQualScore : 4 4 0 0 6 00 6 6 6 6 6 00 6 6 6 6 6 6 6 6 66 6 44 0 4 4 11 4 4 4 6 8888 9 1 0000 999 11 4 4444444 0 6 00 6 6 6 6 6 00 6 6 6 00 6 6 6 6 6 6 6 6 3 3 3 3 888 111111111 3 999 3 888888 3 3 66 3 3 1111 222 3 3 3 3 66 66 7 66 7 3 3 2222 3 111 3 6 6 6 6 6 00 55 0 4 66 4 3 6 6 6 7777 3 5 6 00 222 6 6 6 6 00 6 6 888 00 6 00 6 6 0000 6 6 777777777 6 00 6 4 6 6 6 6 6 00 6 6 00 3 333 6 6 6 6 3 3 1111 66 3 3 3 66 3 3 3 5555 3 3 3 3 7 3 3 3 3 22 1 22 4 1 22 9 9 111111 00000 9 9 9 9999 7 55555 99 9 9 9
consensus : AACGTGCAA-CC-TTAG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAG-CGATT-GAG-GGT-AAAA--TGAT-T-TGA-GACAA---ATGATTAGATCAAAATGAT--T-ATTTA--T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TTCAATCG-ACTCAAAATT-AC-TC-A-CTT-CAA-TTAC-TCAAAA-TTGCT-CAA-TG---T---T-AT--ATAT-C-T-G-CTCAAAT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAGA--AA--AA-C--TATAA-TAGAAG-T-AAG---GGT-GC--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-AAA----GA-CT-AT-T--CAG--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-CT-AA---GTTT-TC-TCTCCTTA-C--GGATG-TTGTCT--C-TGTCACGAATGA-G-T-G-T-A--GA-C-T--GACTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATA-ATATACACA-TGATG-A--AAAA--AT-AA-TA-CCAAACTCGTT
Reference ( family-5383 ) : AACGTGCAA-CC-TTAG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAG-CGATT-GAG-GGT-AAAA--TGAT-T-TGA-GACAA---ATGATTAGATCAAAATGAT--T-ATTTA--T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TTCAATCG-ACTCAAAATT-AC-TC-A-CTT-CAA-TTAC-TCAAAA-TTGCT-CAA-TG---T---T-AT--ATAT-C-T-G-CTCAAAT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAGA--AA--AA-C--TATAA-TAGAAG-T-AAG---GGT-GC--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-AAA----GA-CT-AT-T--CAG--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-CT-AA---GTTT-TC-TCTCCTTA-C--GGATG-TTGTCT--C-TGTCACGAATGA-G-T-G-T-A--GA-C-T--GACTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATA-ATATACACA-TGATG-A--AAAA--AT-AA-TA-CCAAACTCGTT
gi|1 : CGTGCA---C-TAGG-TTTTCCAA-TTTAGACTGAGCT-A-TTGCTGCCAAAAT-AA-T-GA-TT-CGT--GTTGT-GAGTTC-TC-TCG----CTT-ATGTCCGAGA-TATTT-TGAACAA-CGATT-GAG-GGT--AAA--TGAT-T-TGA-GAC-A---ATGATTAGATCAAAATGATTGT-ATTTA--T--TTAC-CAC-------GTAAGC--TCCA-A--T-C-AC--T-A-TAATTA--T-AA-CAAA-AATTTCAATCG-ACTCAAAATT-A--TC-A-CTT-CAA-TTACGTCAAAATTTGCTCCAA-TGTATT---T-AT--ATAT-C-TGG-CTCAAAT-----ATTAA-TCT--GCTCAATA-CGATCTCAATTTTGTTG---TA-TCCAAT-GAGACGAAATAA-C--TAAAA-TAAGAG-TCAAGTTCGGT-GCATTG-GT-G-A-GCAAT-G-TCTATCATT-CTATCTAAA--GTA-TTTAAT-AAATTTATTTTATTACTG-AC-TTTGTATA-GATAAA----TG-CT-AT-TCCCAG--TACA-C-G-TTCATA-TA-C-C-CCAC--ATATT--G-CT-AAAGTATTT-TCATCTCCTTA-CCGAGATG-TTGTCTTCT-TGTCAAGAATGA-G-T-GCT-ACGAA-C-TTGAACTTGGTTCAACGGGATATTTATGAC-CCTACTGCTTC-G-CTC-C-GAATTGT--TGACTAATGATTGAGCG--TA-TG-A--TT-GGTTAG-AAA-TCTAGCTCTTTGTA--TT-GGT-CAGT-G-TATT-GGTAT-G-TTTCAA-T-CCACA-C--TTCC-GATTCAC-AATTTTTATA-AC------TATATT-----A-CAGGAAT-AT-ATAGGAT--ATATACACATTGGTG----AAAA--AT-AA-TA-
gi|10 : AG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTC-TC-TTGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAG-CGATT-GAT-GGT-AAAA--TGAT-T-TGA-GAC-A---ATGATTAGATCAAAATGAT--T-ATTTAT-T--TTAC-CACGAAGGCGG-AAGCAATCCA-A--T-C-AC-GT-A-TAATTT--T-AA-CAAA-A--TTTAATCA-ATTCAAAATT-AC-TC-A-TTT-CAA-TTAC-TCAATA-TTGCT-CAA-TG---T---T------TAT-C-A-A-GT-AAATAATCAATA-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-T-AAAT-GAGA--AA--AA-CTATATAA-TAGAAG-T-AAT---GGT-GC--TA-
gi|10 : TTATTTTATTATTG-AC-TTGGTAAA-GG-AAA----GA-CTTGT-T--CAG--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-TT-A------------------------GGATG-TTATCT--C-GGTCACGACAGA-G-T-A-T-A--GA-C-T--GACTTGGTTC-ACAG--acgttattttattattgacttggtaaaggaaagacttgttcagtcacgtctataccttacaattgttaggatgttatctcggtcacgacagagtatagactgacttggttcacag
gi|11 : agtttctcaatttagactgagctacttgctcaaaataatgattcgtgttgtgggttctcttggctttattccgagatattgaacagcgattgatggtaaaatgatttgagacaatgattagatcaaaatgattatttattttaccacgaaggcggaagcaatccaatcacgtataattttaacaaaatttaatcaattcaaaattactcatttcaattactcaatattgctcaatgtttatcaagtaaataatcaataatctgctcaattcgactcaatttgtataaatgagaaaaactatataatagaagtaatggtgctaacgTG-AC-TTTGTATA-GG-AAA----GA-CTTAT-T--CAG--T-CA-C-G-TC--CA-TA-A-C-TTTC--A-ATT--C-CT-AC---GTTT-TC-TCTTCTTA-TT-GGATG-TTTTCT--C-TGTCATGATTGA-T-T-G-T-A--GA-C-T--AACTTGGTTC-ACGG--TATTTAT-AC-CCTACAGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGAAAA-AAA-TCTTGTTGTTTG-A--TT-AGT-CAAT-G-TATT-GGTAG-G-TTTCAA-T-C--CG-C--TTCCTGATTCAC-AA--CTTA-A-AC------TATATC-----A-AAGGAAT-ATAATAAGA-A-ATATATACA-TGATG-A--AAAA--AG-TA-TA-CCAA
gi|12 : t-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AA-CACA-T--TTCTTTCA-ACTCCAAATT-AC-TC-A-CTT-CAA-TTAC-TCAATA-TTGCT-CAA-TG---TTTAT-AT--ATAT-A-T-A-CTCAAAG-----CTT-A-TCT--GTTCAATT-CGA-TTCAAT----TTG---TA-T-AAAT-GAGA--A------------------AAG-T-AAG---GGT-GC--TA-GT-G-A-GCTAT-G-TC--TCATTCCTATCTAAA--GTA-cttctt
gi|13 : TTC-ACAG--TATTTAT-AC-CCTACAGCCTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAA-AAA-TCTAGTTATTTG-T--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGGAT-AT-AT----T-------CACA-TGAT--A--AAAA--GC-AA-TA-CCAAACTCGTT
gi|14 : C-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATATATATACACA-TGATG----AAAA--AT-AA-TA-CCAAACTCGT
gi|15 : -TTGCT-CAA-TG---T---T--T--ATAT-----------------------A-TCT--GCTCAATT-CAA-CTCAAT----TTG---TA-TCAA-T-GAGA--AA--AA-C--TATTA-TAGAAG-T-AAG---AGT-GA--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATC
gi|16 : GCAA-AC-GTAG-TTTCTCAA-TTTAGATTGAGCT-ATTTGCT--CAAAAT-AA-T-TA-TT-TGT--GTTGT-GGGTTC-TT-TCAG-T-TTC-AT-TCCGGTG-TA--T-TGAACAG-CGATT-c
gi|18 : --CA-C--TTCCGGATTCAC-AA--TTTA-A-AC------TATATC-----A-AAGGAAT-AT-ATAAGA-A-TTTTATACA-TGATG-A--AAAATTAT-AA-TA-CTAAATTCGTT
gi|19 : CTTGCT--CAAAAT-AA-T-AA-TT-AGT--GATGT-GGGTTC-TC-TCGC-C-TTT-AT-TCCGAGA-TA--T-T
gi|2 : tgtaacgtgcaatcgcagattAACGTGCAA-CCCTTAC-GTTCTCAA-TTTAGACTGAGCTTACTTGCT--CAAAATTAA-TTGA-TTTCGT--GT-GTAGGGTTA-TC-TCGTTC-TTT-AT-TCCGACG-TA--T-TGAACAA-CGATT-GAG-GGT-AAAA--TGATAT-TGA-GACAA----TGATTAGATCAAA-TGAT--T-ATTT---T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GTTA-TA-TTA--TTAA-CAAA-AATTTCAATCG-ACTCAAAATTTAC-TC-A-CTTTCAA-TTAC-TCAAAA-T-GCT-CA--TG---T---TTAT--ATAT-C-T-G-CTCAAAA-----ATT-A-TCTTTGTCCAATT-CGA-CT-AAT------A---TAGTAAAAT-GAGA--AA--AAAC--TATAA-TAGAAG-T-AAG---GGT-G---TATGT---A-GCAATTG-T---TCATTCCTATCTAAA--GTA-TTTA-TAAA--TTATTTTATTACTGGAC-TTTGT-TA-GG-AAA----GA-CTTAT-T--CAG--T-CA-C-GGTC--TA-TA-C-C-TTAC--A-ACT--G-CT-TA---GTTTATC-TCTC-TTA-C--G-ATG-T-GTCT--C-TGTCA-GAATGA-G-TCA-T-A--GA-C-T--GACT--GATC-ACG---TATTTAT-ACACCTACTGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA--CTAGCTATTTG-AC-TT-GGT-CAGT-GTTAT---GTAG-GATTTCAA---C--CA-CTTTTCCGATTTCAC--A--TTTA-ATAC------TATATTAGGAAA-AAAAAATAAT-ATAAGATA---ATACACC-TGATG-A--AAAA--TT-AATTA-CCAAACTCGTT
gi|20 : tgt-A-AC------TATATT-----A-AAGGAAT-AT-ATGAGAT--ATAGGCACA-TGAT--A--TGAA--AT-AA-TA-CCAAACTCGTT
gi|21 : AACGAGCAA-CC-TT-G-TTTCTCAA-TTTAGACTGAGCT-At
gi|3 : attgtaCGTGCAA-CC-GTAG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAACT-AA-T-GA-TT-CGT--GTGGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAGACGATTTGAGTGGT-AAAA--TGAT-T-TGA-GACAA----TGATTAGATCAAAATGAT--T-ATTT-------TAC-CAG-------A-AAGCAATTCA-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TT-AATCG-ACTCAAAATC-AC-TC-A-CTT-CAA-TTAC-TCAAAA-TTGCT-CAAATG---TA--T-ATTAATAT-C-T-G-CTCAAAC-----AAT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAA-T-GAGA--AA--AA-C--TATAAATAGAAGAT-AAG---GGTTGC--T--GT-G-A-GCA-T-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAA-TTATTTTATTACTGGAC-TTTGTATA-GG-AAA----GA-CTTAT-T--CAG--T-CA-C-G-TC--TA-TA-C---TTGCTAA-GCA--G-CT-AA---GTTT-TC-TCTCCTTA-CC-GGATG-TTGTAT--C-TGTTACGAATGA-G-T-G-T-A--GA-C-T--GACTTGGTTC-ACGG--TGTTTAT-AC-CCTACTGCTTC-G-CCC-C-GA----T--TGGATAATGATTGATCG-TTA-CG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--TTTA-A-ATTACATGTATATC-----A-AAGGAAT-AT-ATAAGAT--ATATACACA-TGATG----AAAA--CT-AA-TA-CCAAACTCGTTgct
gi|4 : GCAA-CC-TTAGATTTCTCAAGTTTAGACTGAGCT-ACTTCGT--CAAAAT-AAGT-GA-TT-CGTCAATTGT-GG-TTC-TC-T-GG-CGTTT-AT-TC-GAGA-TA--TATGAACAA-CGGCT-GAG-G-T-AAAAACTGAT-TCTGA-GACAATGAATG--TAGATCAAAATGAT----ATT-A--T--TTAC-TAC-------G-AAGCAATCCATA--TGC-AG-GT-A-TAATTA--T-AAGCAAA-A--TTCAATCG-ACTCAAAATT-CC-TC-AACTT-CAA-TTAC-TCAAAA-T-GCT-CGA-TG---T---T-ATG-ATAT-C---G-CTTCAAT------TT-ACTCT--GCTCAATT-CGA-CTCAAT----TTGGAATA-TA---T-GAGA--A------C--TATAC-TAGAAG---AAG---GAT-GA--TA-GT-G-A-GCAAT-G-GTGGTCATTCCTCTTTAAAAAGTAATTTGATAGC-----TTCTTTTACTG-AC-TTTGTATA-GG-AAA----GATCT-ATAT--CGGC-T-CA-C-G-TC--TA-TA-C-CATTA---A-ATC--A-CT-AAT--GTTT-TC-TC--CATA-C--CGATG-TTGTCC--T-CGTCAAGAATGG-A-T-G-T-A--GA-C----GACGGGTTTC-ACG----ATTATT-AC-TCTACTGCTTC-G-CTC-C-GA----T--TGGATAA-GATTGAGCGTTTA-TG-A--AT-GGTTAG-AAA-CCTAGCTATTTG-A--TT-GGTACAGT-G-TATTAGGTAGCG-TTTCAACT-C--CA-C--TTCC-GATTTAC-AA---TTA-A-AC------TACATT-----A-AGGAAAT-AT-ATAAGAT--ATATACACA-TGATG-ATGAAAA--AT-AA-TA-CCAAACTCGTT
gi|5 : gAACGTGCAA-CC-TTAG-TTTCTCA--TTTAGACTGAGCT-ACT-GCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTCGTC-TCGG-C-TTT-AT-TCCGAGA-TAA-T-TGAACA--CGATT-GAG-GGT-AAAA--TGAT-T-TGA-GACAA---ATG-TTAGATCAAAATGAT--T-ATTTA--T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AT-CAAA-A--TTCAATCG-ACTCAAAATT-AC-TC-C-CTT-CAA-TTAC-TCAAAA-TTACT-CAA-TG---T---T-AT--ATAT-C-T-G-CTCAAAT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAGA--AA--AA-C--TATAA-TAAAAG-T-AAG---GGT-GC--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-AAA----GA-CT-AT-T--CAA--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-CT-AA---GTTT-TC-TCTCCTTAGC--GGATG-TTGTCT--C-TGTCAAGAATGA-G-T-G-T-A--GA-C-T--GGCTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CCC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GTTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-C-GT-G-TATT-GGTAT-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATGAGATA-ATATACACA-TGATG-A--AGAA--AT-AA-TA-CCAAACTCGTT
gi|6 : GTGCAAGCC-GTAG-TTCCTCAT-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GATTT-CGT--GTTGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCG-CA-TAGTT-TAAACAG-TGATTGGAT-GGT-AAAA--TGAT-T-TGA-GACAAG--ATGA-TAGATTAAAA-GAT--T-ATTTA--TACTTTC-CAC-------G-ACGCAATCCA-ATTT-C-ACGGT-A-TAATTA--T-AA-CAAACA--TTTAATCA-ACTCAAAATT-AC-TCGA-CTT-C------C-----AA-TTACT-CAG-TG---T---T--T--ATATAC-T-GCCTCAAA------AAT-A-TCT--GCTC-ATT-TAA-CTCAAT----TTG---TA-T--AAT-GGGA--AA--AA-C--TATAA-TAGAAG-T-AA----GGT-G---TA--T-GTA-GCAAT-G-TC--TCATTCCTATCTAAA---TA-TTTAATTAAAATTGTTTTA-TA-TG-AC-TTTTGAT-----AAA----GC-TT-A-----CAGCTC-CA-C-G-TC--TA-TATC-C-TTAC----ATT--GTTT-AC---GTTT-TC-TCT--TTAGC--CGATGCTTGTTG--C-TGCAAC-ATTGA-GTT-G-T-A--GA-CTT--GACTTGGTT--ACGGT-TATTTAT--T-CCT-CTGCTTC-GACTC-C-GA----TGCTGGATAATGATT-AGCG-TTATTG-A--TT-GGTTAA-AAAGTCTAACTATTTG-AAGTG-GGT-C-GT-G-TATT-GGTAG-G-TTTC-A-T-C--CA-C--CTTCTGATTCACTAA--CTTA-A-ACT-----TATAAT-----T-AAGGAAT-CT-ATAAGAAG-ATATACACACTGATG-----AAA--AT-AA-TA-TCAAACTCGTT
gi|7 : CGTGCAA-CG-T-AG-TTT-TCAA-TTAGAACTGAGCT-ACTTGCT---AAAAT-AA-T-GA-TT-CGT--GTGGT-GGGTTC-TCATCGG-C-TTTTAT-TC-GAGAATA--T-TGAACAGGCGATT-GAG-GGT-AAAA--TGAT-T-TGAAGACAA---GTGATTAGATAAAAATGAT--T-ACTTATTT--TTAC-CAC-------G-AAGCAATCCA-A--T-T-AC--T-ATTAATTAGTT-AA-C-AA-A--TTCAATCG-GCTCAAAATT-AC-TC-A--TT-C-A-TT---TC-----TT--T-C---------------------T-C-T-G-CTCAAAT-----ATT-A-ATT--GCTCAATTCCAA-CTCAAT----TTGA--TA-TAAAATGGAGA--AA--AA-A--TATAA-TAGAAG-T-AA----GGT-GC--TA-GT-G-A-GCAAT-GCTC--TCATTCCTATCTACA--GTA-TT---TAAAAATTATTTTATTACTG-ACATTTGTATACGG-AAA----GATTT-AT-T--CAC--T-CA-CGG-TC--TA-TT-CGT-TTAC--A-ATT--G-C-------------C-T--------------TG-TTGTCT--C-TGTCACGAATGA-G-T-G-T-A--GATC-T--GACTTGGTTC-ACGT--TATTTAT-A--CCTACTG-TTC-G-CT--C-GA----T--TGGATAATGATTGA--G-TTA-TG-AACTT-GGTTAGAAAA-CCTAGCTATTTG-A--CTAGGT-CAGTGG-TATTGGGTAG-G-TTTCAA-T-C--CAGC--TTCC-GATTCAC-AA--TTTA-A-A-------TATATT-----ATAAGGAAT--T-ATAAGATA-TGATACA-A-TGATATG--AAAA--CT-AA-TACCCAAACTCGTT
gi|8 : -ACTTGCT--CAAA-T-AA-T-GA-TT-CGT--GGTGA-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TC--T-TGAACAA-CAATT-GAG-CGTAAAAA--TGAT-T-TGA-GAACA---ATGATTAGAT-AAAATGAT--TAATCTAT-T--TTATACAC-------GAAAGCAATCC--A--T-CAAC-GT---TAATTA--T-AA-C-AA-A--TTC-ATCGAACTCAAAATT-ACTTC-A-CTT-CAAGTTAC-TCAAAA-TT-CT-CAA-TG---T---T------TTT-CTT-G-CTC-AAT-----ATT-A-TAT--GCTCAATT-TG--------------G---TA-T-AAAT-GAG---AA--AA-C--TATAACTAGAAG-T-AAG---GGT-GC--TA-GTCG-A-GCAAT-G-TC--TTATTCCTATCTATA--GTA-TTTAAT-AAAACTATTTT-TTTCTG-AC-TTTGTATA-GG-AAA----GG------------------A-C---TC--TACTA-C-C-TTCA--A-ATT--G-CT-AA---GTGT-TC-TCT-CTTC-C--GGATG-TTGTCT--CTTGTCA--GATGA-G-T-G-TGG--GA-C-T--GACTTGGTT--ACGG--TATTTAT-AC-CCTACTGCTTTGG-CCCGC-GC----T--TGA--AATATTTGAGCG-TTA-TGAA--AT-GGTT-G-AAA-TCTAGC-ATTTG----TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-TCC--CA-C--TTCTGTATTCAC-AA--CTT--A-AC------TA---T-----A-AAAGAAT-A----AA-------------A-TGATT-G--AAAA--TC-AA-TA-CCAAACTCGTT
gi|9 : A-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TTCAATTG-GCTCAAAATT-AC-TC-A-CTT-CAA-TTAC-TCAGAA-TTACG-CAA-TG---T---TTAT--ATTT-C-T-G-CTCAAAT-----ATT-A-TTT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAATT-GAGA--AA--AAAC--TATAA-TAGAAG-T-A-G---GGT-GC--TA-GT-G-AAGCAAT-G-TCACTCAT-CCTATCTAA---GTA-TTTAA---AAATAATTTT-TTACTG-AC-TTTGTATA-GG-AAATTAAGA-CT-AT-T--CA---T-CAGC-G-TC--T--TA-C---TTAC--A-ATTCTG-CTCAA---ATTT-TC-TCTCTTAA-C--GGATG-TTGTCT--C-TGTCACGAATGAAG-T-G-T-T--GA-C-T--GACTTGGTTC-ACCG--TATTTAT-AC-CCTACTGCTTC-G-TTC-CCGA----T--TGGAT-ATGATTGAGCG-TTA-TG-A--TTGGGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TGTATTA----A-AAGGAAT-AT-ATAAGAT--ATATACACA-TGATG-----AAA--ATCAA-TA-CCAAACTCGTt
blockSeqs : G C A G T . T G T T T CA A G A T G T . A GT A GA T T A AC A C A A TGAA A TA ATT AC A GAAGGCG A T TT G A G T T GT T G C AT A T T G A T G . . G . A . TTATAT A TT C TAATCA . C TT C . . GAA G C A G . . A TA A A . T T C T C T A T C GG AA A A AA A G A C . TTAA T T A . GCT . G G G . C T CA TA . CT T C AT A . TCTTATT C . T C A T C . G . T T . . GT . A G A G C . GC T T A AC G A G AAG A A G T A C A C C . G TT T T . . T TACATG AGGAA T A A TATA C GATG TT C T C
blockSeqs : . . . . . . . . . . . . . . . . . . . . A . GG G . . . . . . A GA A T AT . . . . . . . . . . . . . . . . . . . . . . . . . G . . . ATATTA . A . G . . . . . . A . A A . . . A . C . . G . C . . . . . . AC . . A AA A G . . . . T T . . GC . . . . . . . GT . . . . . C . . CCTTACC . . . T . . . . . . . . . . G . . . . . . . . . . . . . . . AC . . . . G . . . . . . . G . . . . T A . . . TAA . ATG . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . A A A T AT . . . . . . . . . . . . . . . . . . . . . . . . . G . . . TTAT . T . A . . . . . . . . A A . . . . . . . . G . A . . . . . . . . . A AA A . . . . . . T . . G . . . . . . . C . . . . . A . . CCTTAGC . . . C . . . . . . . . . . G . . . . . . . . . . . . . . . A . . . . . . . . . . . . G . . . . . . . . . AGA . GA . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . A A A T A . . . . . . . . . . . . . . . . . . . . . . . . . G . . . TATG . T . C . . . . . . . . A A . . . . . . . . G . C . . . . . . . . . A AA T . . . . . . T . . G . . . . . . . C . . . . . A . . CTTAAC . . . A . . . . . . . . . . G . . . . . . . . . . . . . . . T . . . . . . . . . . . . G . . . . . . . . . TAT . GA . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . A G A T A . . . . . . . . . . . . . . . . . . . . . . . . . G . . . TTAT . T . T . . . . . . . . A A . . . . . . . . G . A . . . . . . . . . T AA A . . . . . . . . . G . . . . . . . C . . . . . A . . CTTAC . . . A . . . . . . . . . . G . . . . . . . . . . . . . . . A . . . . . . . . . . . . G . . . . . . . . . AA . GA . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . A A A T A . . . . . . . . . . . . . . . . . . . . . . . . . G . . . TAT . T . T . . . . . . . . A A . . . . . . . . G . C . . . . . . . . . A A A . . . . . . . . . G . . . . . . . C . . . . . C . . CATAC . . . C . . . . . . . . . . G . . . . . . . . . . . . . . . A . . . . . . . . . . . . G . . . . . . . . . AT . GA . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . C . . T . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TT . T . T . . . . . . . . A A . . . . . . . . G . C . . . . . . . . . . . A . . . . . . . . . A . . . . . . . C . . . . . A . . TTAGC . . . C . . . . . . . . . . T . . . . . . . . . . . . . . . A . . . . . . . . . . . . G . . . . . . . . . TA . TG . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TT . T . T . . . . . . . . . T . . . . . . . . G . C . . . . . . . . . . . . . . . . . . . . . C . . . . . . . C . . . . . A . . CTTCC . . . C . . . . . . . . . . G . . . . . . . . . . . . . . . A . . . . . . . . . . . . T . . . . . . . . . TA . A . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . T . T . T . . . . . . . . . . . . . . . . . . G . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . A . . . . . . . . . . . . G . . . . . . . . . TA . G . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . G . . . . . . . . . TA . A . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TA . G . . . .
blockSeqs : . . . . . . . . . . . . . T . G . . . .
blockSeqs : . . . . . . . . . G . . . .
blockSeqCons : ** ** T*** ** *** TAT****** T** **** ** ** G*** C** ** ** ** A*** CTTAC**** ** ** ** G** **** A*** ** **
originalCons : AACGTGCAA-CC-TTAG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAG-CGATT-GAG-GGT-AAAA--TGAT-T-TGA-GACAA---ATGATTAGATCAAAATGAT--T-ATTTA--T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TTCAATCG-ACTCAAAATT-AC-TC-A-CTT-CAA-TTAC-TCAAAA-TTGCT-CAA-TG---T---T-AT--ATAT-C-T-G-CTCAAAT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAGA--AA--AA-C--TATAA-TAGAAG-T-AAG---GGT-GC--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-AAA----GA-CT-AT-T--CAG--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-CT-AA---GTTT-TC-TCTCCTTA-C--GGATG-TTGTCT--C-TGTCACGAATGA-G-T-G-T-A--GA-C-T--GACTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATA-ATATACACA-TGATG-A--AAAA--AT-AA-TA-CCAAACTCGTT
finalCons : AACGTGCAA-CC-TTAG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAG-CGATT-GAG-GGT-AAAA--TGAT-T-TGA-GACAA---ATGATTAGATCAAAATGATT---ATTTA--T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TTCAATCG-ACTCAAAATT-AC-TC-A-CTT-CAA-TTAC-TCAAAA-TTGCT-CAA-TG---TTAT------ATAT-CT--G-CTCAAAT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAGA--AA--AA-C--TATAA-TAGAAG-T-AAG---GGT-GC--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-AAA----GA-CT-AT-T--CAG--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-CT-AA---GTTT-TC-TCTCTTAC----GGATG-TTGTCT--C-TGTCACGAATGA-G-T-G-T-A--GA-C-T--GACTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA-TCTAGCTATTTGA---TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATA-ATATACACA-TGATG-A--AAAA--AT-AA-TA-CCAAACTCGTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|22 ): ATAACTCGTACAAGAAATGACTAACAAATAT
Alignments
lowQualScore : 11 1111 111 1111111 11 222222222 111111 1 11 1 1111 2222222222 111111 11111 2222 11111
lowQualScore : 4 4 4 4 3 55 3 3 3 3 3 55 3 3 3 3 3 3 3 3 33 3 99 8 4 4 66 4 4 4 4 5555 1 0 7777 666 66 4 4444444 8 3 55 3 3 3 3 3 55 3 3 3 00 3 3 3 3 3 3 3 3 3 2 3 3 555 333333333 3 555 3 000000 3 3 44 3 3 7777 999 3 1 3 3 44 44 6 44 6 3 3 6666 3 777 3 3 3 3 3 3 55 55 4 7 66 3 7 3 3 3 7777 7 4 3 55 999 3 3 3 3 55 3 3 777 55 3 55 3 3 2222 3 3 0000000000 3 55 3 7 3 3 3 3 3 55 3 3 55 3 888 3 3 3 3 3 3 7777 44 3 3 3 44 3 3 3 8888 3 3 3 3 6 3 3 3 3 44 3 44 5 3 44 2 2 111111 00000 2 2 2 0000 5 77777 33 2 2 2
lowQualScore : . . . . . .. . . . . . .. . . . . . . . . .. . .. . . . .. . . . . .... . . .... ... .. . ....... . . .. . . . . . .. . . . .. . . . . . . . . . . . . ... ......... . ... . ...... . . .. . . .... ... . . . . .. .. . .. . . . .... . ... . . . . . . .. .. . . .. . . . . . .... . . . .. ... . . . . .. . . ... .. . .. . . .... . . .......... . .. . . . . . . . .. . . .. . ... . . . . . . .... .. . . . .. . . . .... . . . . . . . . . .. . .. . . .. . . ...... ..... . . . .... . ..... .. . . .
lowQualScore : 4 4 0 0 6 00 6 6 6 6 6 00 6 6 6 6 6 6 6 6 66 6 44 0 4 4 11 4 4 4 6 8888 9 1 0000 999 11 4 4444444 0 6 00 6 6 6 6 6 00 6 6 6 00 6 6 6 6 6 6 6 6 3 3 3 3 888 111111111 3 999 3 888888 3 3 66 3 3 1111 222 3 3 3 3 66 66 7 66 7 3 3 2222 3 111 3 6 6 6 6 6 00 55 0 4 66 4 3 6 6 6 7777 3 5 6 00 222 6 6 6 6 00 6 6 888 00 6 00 6 6 0000 6 6 5555555555 6 00 6 4 6 6 6 6 6 00 6 6 00 3 333 6 6 6 6 3 3 1111 66 3 3 3 66 3 3 3 5555 3 3 3 3 7 3 3 3 3 22 1 22 4 1 22 9 9 111111 00000 9 9 9 9999 7 55555 99 9 9 9
consensus : AACGTGCAA-CC-TTAG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAG-CGATT-GAG-GGT-AAAA--TGAT-T-TGA-GACAA---ATGATTAGATCAAAATGAT--T-ATTTA--T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TTCAATCG-ACTCAAAATT-AC-TC-A-CTT-CAA-TTAC-TCAAAA-TTGCT-CAA-TG---T---T-AT--ATAT-C-T-G-CTCAAAT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAGA--AA--AA-C--TATAA-TAGAAG-T-AAG---GGT-GC--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-AAA----GA-CT-AT-T--CAG--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-CT-AA---GTTT-TC-TCT-C-TTA-C--GGATG-TTGTCT--C-TGTCACGAATGA-G-T-G-T-A--GA-C-T--GACTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATA-ATATACACA-TGATG-A--AAAA--AT-AA-TA-CCAAACTCGTT
Reference ( family-5383 ) : AACGTGCAA-CC-TTAG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAG-CGATT-GAG-GGT-AAAA--TGAT-T-TGA-GACAA---ATGATTAGATCAAAATGAT--T-ATTTA--T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TTCAATCG-ACTCAAAATT-AC-TC-A-CTT-CAA-TTAC-TCAAAA-TTGCT-CAA-TG---T---T-AT--ATAT-C-T-G-CTCAAAT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAGA--AA--AA-C--TATAA-TAGAAG-T-AAG---GGT-GC--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-AAA----GA-CT-AT-T--CAG--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-CT-AA---GTTT-TC-TCT-C-TTA-C--GGATG-TTGTCT--C-TGTCACGAATGA-G-T-G-T-A--GA-C-T--GACTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATA-ATATACACA-TGATG-A--AAAA--AT-AA-TA-CCAAACTCGTT
gi|1 : CGTGCA---C-TAGG-TTTTCCAA-TTTAGACTGAGCT-A-TTGCTGCCAAAAT-AA-T-GA-TT-CGT--GTTGT-GAGTTC-TC-TCG----CTT-ATGTCCGAGA-TATTT-TGAACAA-CGATT-GAG-GGT--AAA--TGAT-T-TGA-GAC-A---ATGATTAGATCAAAATGATTGT-ATTTA--T--TTAC-CAC-------GTAAGC--TCCA-A--T-C-AC--T-A-TAATTA--T-AA-CAAA-AATTTCAATCG-ACTCAAAATT-A--TC-A-CTT-CAA-TTACGTCAAAATTTGCTCCAA-TGTATT---T-AT--ATAT-C-TGG-CTCAAAT-----ATTAA-TCT--GCTCAATA-CGATCTCAATTTTGTTG---TA-TCCAAT-GAGACGAAATAA-C--TAAAA-TAAGAG-TCAAGTTCGGT-GCATTG-GT-G-A-GCAAT-G-TCTATCATT-CTATCTAAA--GTA-TTTAAT-AAATTTATTTTATTACTG-AC-TTTGTATA-GATAAA----TG-CT-AT-TCCCAG--TACA-C-G-TTCATA-TA-C-C-CCAC--ATATT--G-CT-AAAGTATTT-TCATCTCC-TTA-CCGAGATG-TTGTCTTCT-TGTCAAGAATGA-G-T-GCT-ACGAA-C-TTGAACTTGGTTCAACGGGATATTTATGAC-CCTACTGCTTC-G-CTC-C-GAATTGT--TGACTAATGATTGAGCG--TA-TG-A--TT-GGTTAG-AAA-TCTAGCTCTTTGTA--TT-GGT-CAGT-G-TATT-GGTAT-G-TTTCAA-T-CCACA-C--TTCC-GATTCAC-AATTTTTATA-AC------TATATT-----A-CAGGAAT-AT-ATAGGAT--ATATACACATTGGTG----AAAA--AT-AA-TA-
gi|10 : AG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTC-TC-TTGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAG-CGATT-GAT-GGT-AAAA--TGAT-T-TGA-GAC-A---ATGATTAGATCAAAATGAT--T-ATTTAT-T--TTAC-CACGAAGGCGG-AAGCAATCCA-A--T-C-AC-GT-A-TAATTT--T-AA-CAAA-A--TTTAATCA-ATTCAAAATT-AC-TC-A-TTT-CAA-TTAC-TCAATA-TTGCT-CAA-TG---T---T------TAT-C-A-A-GT-AAATAATCAATA-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-T-AAAT-GAGA--AA--AA-CTATATAA-TAGAAG-T-AAT---GGT-GC--TA-
gi|10 : TTATTTTATTATTG-AC-TTGGTAAA-GG-AAA----GA-CTTGT-T--CAG--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-TT-A-------------------------GGATG-TTATCT--C-GGTCACGACAGA-G-T-A-T-A--GA-C-T--GACTTGGTTC-ACAG--acgttattttattattgacttggtaaaggaaagacttgttcagtcacgtctataccttacaattgttaggatgttatctcggtcacgacagagtatagactgacttggttcacag
gi|11 : agtttctcaatttagactgagctacttgctcaaaataatgattcgtgttgtgggttctcttggctttattccgagatattgaacagcgattgatggtaaaatgatttgagacaatgattagatcaaaatgattatttattttaccacgaaggcggaagcaatccaatcacgtataattttaacaaaatttaatcaattcaaaattactcatttcaattactcaatattgctcaatgtttatcaagtaaataatcaataatctgctcaattcgactcaatttgtataaatgagaaaaactatataatagaagtaatggtgctaacgTG-AC-TTTGTATA-GG-AAA----GA-CTTAT-T--CAG--T-CA-C-G-TC--CA-TA-A-C-TTTC--A-ATT--C-CT-AC---GTTT-TC-TCTTC-TTA-TT-GGATG-TTTTCT--C-TGTCATGATTGA-T-T-G-T-A--GA-C-T--AACTTGGTTC-ACGG--TATTTAT-AC-CCTACAGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGAAAA-AAA-TCTTGTTGTTTG-A--TT-AGT-CAAT-G-TATT-GGTAG-G-TTTCAA-T-C--CG-C--TTCCTGATTCAC-AA--CTTA-A-AC------TATATC-----A-AAGGAAT-ATAATAAGA-A-ATATATACA-TGATG-A--AAAA--AG-TA-TA-CCAA
gi|12 : t-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AA-CACA-T--TTCTTTCA-ACTCCAAATT-AC-TC-A-CTT-CAA-TTAC-TCAATA-TTGCT-CAA-TG---TTTAT-AT--ATAT-A-T-A-CTCAAAG-----CTT-A-TCT--GTTCAATT-CGA-TTCAAT----TTG---TA-T-AAAT-GAGA--A------------------AAG-T-AAG---GGT-GC--TA-GT-G-A-GCTAT-G-TC--TCATTCCTATCTAAA--GTA-cttctt
gi|13 : TTC-ACAG--TATTTAT-AC-CCTACAGCCTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAA-AAA-TCTAGTTATTTG-T--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGGAT-AT-AT----T-------CACA-TGAT--A--AAAA--GC-AA-TA-CCAAACTCGTT
gi|14 : C-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATAAGATATATATACACA-TGATG----AAAA--AT-AA-TA-CCAAACTCGT
gi|15 : -TTGCT-CAA-TG---T---T--T--ATAT-----------------------A-TCT--GCTCAATT-CAA-CTCAAT----TTG---TA-TCAA-T-GAGA--AA--AA-C--TATTA-TAGAAG-T-AAG---AGT-GA--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATC
gi|16 : GCAA-AC-GTAG-TTTCTCAA-TTTAGATTGAGCT-ATTTGCT--CAAAAT-AA-T-TA-TT-TGT--GTTGT-GGGTTC-TT-TCAG-T-TTC-AT-TCCGGTG-TA--T-TGAACAG-CGATT-c
gi|18 : --CA-C--TTCCGGATTCAC-AA--TTTA-A-AC------TATATC-----A-AAGGAAT-AT-ATAAGA-A-TTTTATACA-TGATG-A--AAAATTAT-AA-TA-CTAAATTCGTT
gi|19 : CTTGCT--CAAAAT-AA-T-AA-TT-AGT--GATGT-GGGTTC-TC-TCGC-C-TTT-AT-TCCGAGA-TA--T-T
gi|2 : tgtaacgtgcaatcgcagattAACGTGCAA-CCCTTAC-GTTCTCAA-TTTAGACTGAGCTTACTTGCT--CAAAATTAA-TTGA-TTTCGT--GT-GTAGGGTTA-TC-TCGTTC-TTT-AT-TCCGACG-TA--T-TGAACAA-CGATT-GAG-GGT-AAAA--TGATAT-TGA-GACAA----TGATTAGATCAAA-TGAT--T-ATTT---T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GTTA-TA-TTA--TTAA-CAAA-AATTTCAATCG-ACTCAAAATTTAC-TC-A-CTTTCAA-TTAC-TCAAAA-T-GCT-CA--TG---T---TTAT--ATAT-C-T-G-CTCAAAA-----ATT-A-TCTTTGTCCAATT-CGA-CT-AAT------A---TAGTAAAAT-GAGA--AA--AAAC--TATAA-TAGAAG-T-AAG---GGT-G---TATGT---A-GCAATTG-T---TCATTCCTATCTAAA--GTA-TTTA-TAAA--TTATTTTATTACTGGAC-TTTGT-TA-GG-AAA----GA-CTTAT-T--CAG--T-CA-C-GGTC--TA-TA-C-C-TTAC--A-ACT--G-CT-TA---GTTTATC-TCT-C-TTA-C--G-ATG-T-GTCT--C-TGTCA-GAATGA-G-TCA-T-A--GA-C-T--GACT--GATC-ACG---TATTTAT-ACACCTACTGCTTC-G-CTC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GGTTAG-AAA--CTAGCTATTTG-AC-TT-GGT-CAGT-GTTAT---GTAG-GATTTCAA---C--CA-CTTTTCCGATTTCAC--A--TTTA-ATAC------TATATTAGGAAA-AAAAAATAAT-ATAAGATA---ATACACC-TGATG-A--AAAA--TT-AATTA-CCAAACTCGTT
gi|20 : tgt-A-AC------TATATT-----A-AAGGAAT-AT-ATGAGAT--ATAGGCACA-TGAT--A--TGAA--AT-AA-TA-CCAAACTCGTT
gi|21 : AACGAGCAA-CC-TT-G-TTTCTCAA-TTTAGACTGAGCT-At
gi|3 : attgtaCGTGCAA-CC-GTAG-TTTCTCAA-TTTAGACTGAGCT-ACTTGCT--CAAACT-AA-T-GA-TT-CGT--GTGGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TA--T-TGAACAGACGATTTGAGTGGT-AAAA--TGAT-T-TGA-GACAA----TGATTAGATCAAAATGAT--T-ATTT-------TAC-CAG-------A-AAGCAATTCA-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TT-AATCG-ACTCAAAATC-AC-TC-A-CTT-CAA-TTAC-TCAAAA-TTGCT-CAAATG---TA--T-ATTAATAT-C-T-G-CTCAAAC-----AAT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAA-T-GAGA--AA--AA-C--TATAAATAGAAGAT-AAG---GGTTGC--T--GT-G-A-GCA-T-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAA-TTATTTTATTACTGGAC-TTTGTATA-GG-AAA----GA-CTTAT-T--CAG--T-CA-C-G-TC--TA-TA-C---TTGCTAA-GCA--G-CT-AA---GTTT-TC-TCT-CCTTA-CC-GGATG-TTGTAT--C-TGTTACGAATGA-G-T-G-T-A--GA-C-T--GACTTGGTTC-ACGG--TGTTTAT-AC-CCTACTGCTTC-G-CCC-C-GA----T--TGGATAATGATTGATCG-TTA-CG-A--TT-GGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--TTTA-A-ATTACATGTATATC-----A-AAGGAAT-AT-ATAAGAT--ATATACACA-TGATG----AAAA--CT-AA-TA-CCAAACTCGTTgct
gi|4 : GCAA-CC-TTAGATTTCTCAAGTTTAGACTGAGCT-ACTTCGT--CAAAAT-AAGT-GA-TT-CGTCAATTGT-GG-TTC-TC-T-GG-CGTTT-AT-TC-GAGA-TA--TATGAACAA-CGGCT-GAG-G-T-AAAAACTGAT-TCTGA-GACAATGAATG--TAGATCAAAATGAT----ATT-A--T--TTAC-TAC-------G-AAGCAATCCATA--TGC-AG-GT-A-TAATTA--T-AAGCAAA-A--TTCAATCG-ACTCAAAATT-CC-TC-AACTT-CAA-TTAC-TCAAAA-T-GCT-CGA-TG---T---T-ATG-ATAT-C---G-CTTCAAT------TT-ACTCT--GCTCAATT-CGA-CTCAAT----TTGGAATA-TA---T-GAGA--A------C--TATAC-TAGAAG---AAG---GAT-GA--TA-GT-G-A-GCAAT-G-GTGGTCATTCCTCTTTAAAAAGTAATTTGATAGC-----TTCTTTTACTG-AC-TTTGTATA-GG-AAA----GATCT-ATAT--CGGC-T-CA-C-G-TC--TA-TA-C-CATTA---A-ATC--A-CT-AAT--GTTT-TC-TC--C-ATA-C--CGATG-TTGTCC--T-CGTCAAGAATGG-A-T-G-T-A--GA-C----GACGGGTTTC-ACG----ATTATT-AC-TCTACTGCTTC-G-CTC-C-GA----T--TGGATAA-GATTGAGCGTTTA-TG-A--AT-GGTTAG-AAA-CCTAGCTATTTG-A--TT-GGTACAGT-G-TATTAGGTAGCG-TTTCAACT-C--CA-C--TTCC-GATTTAC-AA---TTA-A-AC------TACATT-----A-AGGAAAT-AT-ATAAGAT--ATATACACA-TGATG-ATGAAAA--AT-AA-TA-CCAAACTCGTT
gi|5 : gAACGTGCAA-CC-TTAG-TTTCTCA--TTTAGACTGAGCT-ACT-GCT--CAAAAT-AA-T-GA-TT-CGT--GTTGT-GGGTTCGTC-TCGG-C-TTT-AT-TCCGAGA-TAA-T-TGAACA--CGATT-GAG-GGT-AAAA--TGAT-T-TGA-GACAA---ATG-TTAGATCAAAATGAT--T-ATTTA--T--TTAC-CAC-------G-AAGCAATCCA-A--T-C-AC-GT-A-TAATTA--T-AT-CAAA-A--TTCAATCG-ACTCAAAATT-AC-TC-C-CTT-CAA-TTAC-TCAAAA-TTACT-CAA-TG---T---T-AT--ATAT-C-T-G-CTCAAAT-----ATT-A-TCT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAAAT-GAGA--AA--AA-C--TATAA-TAAAAG-T-AAG---GGT-GC--TA-GT-G-A-GCAAT-G-TC--TCATTCCTATCTAAA--GTA-TTTAATAAAAATTATTTTATTACTG-AC-TTTGTATA-GG-AAA----GA-CT-AT-T--CAA--T-CA-C-G-TC--TA-TA-C-C-TTAC--A-ATT--G-CT-AA---GTTT-TC-TCTCC-TTAGC--GGATG-TTGTCT--C-TGTCAAGAATGA-G-T-G-T-A--GA-C-T--GGCTTGGTTC-ACGG--TATTTAT-AC-CCTACTGCTTC-G-CCC-C-GA----T--TGGATAATGATTGAGCG-TTA-TG-A--TT-GTTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-C-GT-G-TATT-GGTAT-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TATATT-----A-AAGGAAT-AT-ATGAGATA-ATATACACA-TGATG-A--AGAA--AT-AA-TA-CCAAACTCGTT
gi|6 : GTGCAAGCC-GTAG-TTCCTCAT-TTTAGACTGAGCT-ACTTGCT--CAAAAT-AA-T-GATTT-CGT--GTTGT-GGGTTC-TC-TCGG-C-TTT-AT-TCCG-CA-TAGTT-TAAACAG-TGATTGGAT-GGT-AAAA--TGAT-T-TGA-GACAAG--ATGA-TAGATTAAAA-GAT--T-ATTTA--TACTTTC-CAC-------G-ACGCAATCCA-ATTT-C-ACGGT-A-TAATTA--T-AA-CAAACA--TTTAATCA-ACTCAAAATT-AC-TCGA-CTT-C------C-----AA-TTACT-CAG-TG---T---T--T--ATATAC-T-GCCTCAAA------AAT-A-TCT--GCTC-ATT-TAA-CTCAAT----TTG---TA-T--AAT-GGGA--AA--AA-C--TATAA-TAGAAG-T-AA----GGT-G---TA--T-GTA-GCAAT-G-TC--TCATTCCTATCTAAA---TA-TTTAATTAAAATTGTTTTA-TA-TG-AC-TTTTGAT-----AAA----GC-TT-A-----CAGCTC-CA-C-G-TC--TA-TATC-C-TTAC----ATT--GTTT-AC---GTTT-TC-TCT-T-TAG-C--CGATGCTTGTTG--C-TGCAAC-ATTGA-GTT-G-T-A--GA-CTT--GACTTGGTT--ACGGT-TATTTAT--T-CCT-CTGCTTC-GACTC-C-GA----TGCTGGATAATGATT-AGCG-TTATTG-A--TT-GGTTAA-AAAGTCTAACTATTTG-AAGTG-GGT-C-GT-G-TATT-GGTAG-G-TTTC-A-T-C--CA-C--CTTCTGATTCACTAA--CTTA-A-ACT-----TATAAT-----T-AAGGAAT-CT-ATAAGAAG-ATATACACACTGATG-----AAA--AT-AA-TA-TCAAACTCGTT
gi|7 : CGTGCAA-CG-T-AG-TTT-TCAA-TTAGAACTGAGCT-ACTTGCT---AAAAT-AA-T-GA-TT-CGT--GTGGT-GGGTTC-TCATCGG-C-TTTTAT-TC-GAGAATA--T-TGAACAGGCGATT-GAG-GGT-AAAA--TGAT-T-TGAAGACAA---GTGATTAGATAAAAATGAT--T-ACTTATTT--TTAC-CAC-------G-AAGCAATCCA-A--T-T-AC--T-ATTAATTAGTT-AA-C-AA-A--TTCAATCG-GCTCAAAATT-AC-TC-A--TT-C-A-TT---TC-----TT--T-C---------------------T-C-T-G-CTCAAAT-----ATT-A-ATT--GCTCAATTCCAA-CTCAAT----TTGA--TA-TAAAATGGAGA--AA--AA-A--TATAA-TAGAAG-T-AA----GGT-GC--TA-GT-G-A-GCAAT-GCTC--TCATTCCTATCTACA--GTA-TT---TAAAAATTATTTTATTACTG-ACATTTGTATACGG-AAA----GATTT-AT-T--CAC--T-CA-CGG-TC--TA-TT-CGT-TTAC--A-ATT--G-C-------------C-T---------------TG-TTGTCT--C-TGTCACGAATGA-G-T-G-T-A--GATC-T--GACTTGGTTC-ACGT--TATTTAT-A--CCTACTG-TTC-G-CT--C-GA----T--TGGATAATGATTGA--G-TTA-TG-AACTT-GGTTAGAAAA-CCTAGCTATTTG-A--CTAGGT-CAGTGG-TATTGGGTAG-G-TTTCAA-T-C--CAGC--TTCC-GATTCAC-AA--TTTA-A-A-------TATATT-----ATAAGGAAT--T-ATAAGATA-TGATACA-A-TGATATG--AAAA--CT-AA-TACCCAAACTCGTT
gi|8 : -ACTTGCT--CAAA-T-AA-T-GA-TT-CGT--GGTGA-GGGTTC-TC-TCGG-C-TTT-AT-TCCGAGA-TC--T-TGAACAA-CAATT-GAG-CGTAAAAA--TGAT-T-TGA-GAACA---ATGATTAGAT-AAAATGAT--TAATCTAT-T--TTATACAC-------GAAAGCAATCC--A--T-CAAC-GT---TAATTA--T-AA-C-AA-A--TTC-ATCGAACTCAAAATT-ACTTC-A-CTT-CAAGTTAC-TCAAAA-TT-CT-CAA-TG---T---T------TTT-CTT-G-CTC-AAT-----ATT-A-TAT--GCTCAATT-TG--------------G---TA-T-AAAT-GAG---AA--AA-C--TATAACTAGAAG-T-AAG---GGT-GC--TA-GTCG-A-GCAAT-G-TC--TTATTCCTATCTATA--GTA-TTTAAT-AAAACTATTTT-TTTCTG-AC-TTTGTATA-GG-AAA----GG------------------A-C---TC--TACTA-C-C-TTCA--A-ATT--G-CT-AA---GTGT-TC-TCT-C-TTC-C--GGATG-TTGTCT--CTTGTCA--GATGA-G-T-G-TGG--GA-C-T--GACTTGGTT--ACGG--TATTTAT-AC-CCTACTGCTTTGG-CCCGC-GC----T--TGA--AATATTTGAGCG-TTA-TGAA--AT-GGTT-G-AAA-TCTAGC-ATTTG----TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-TCC--CA-C--TTCTGTATTCAC-AA--CTT--A-AC------TA---T-----A-AAAGAAT-A----AA-------------A-TGATT-G--AAAA--TC-AA-TA-CCAAACTCGTT
gi|9 : A-A--T-C-AC-GT-A-TAATTA--T-AA-CAAA-A--TTCAATTG-GCTCAAAATT-AC-TC-A-CTT-CAA-TTAC-TCAGAA-TTACG-CAA-TG---T---TTAT--ATTT-C-T-G-CTCAAAT-----ATT-A-TTT--GCTCAATT-CGA-CTCAAT----TTG---TA-TAAATT-GAGA--AA--AAAC--TATAA-TAGAAG-T-A-G---GGT-GC--TA-GT-G-AAGCAAT-G-TCACTCAT-CCTATCTAA---GTA-TTTAA---AAATAATTTT-TTACTG-AC-TTTGTATA-GG-AAATTAAGA-CT-AT-T--CA---T-CAGC-G-TC--T--TA-C---TTAC--A-ATTCTG-CTCAA---ATTT-TC-TCT-C-TTAAC--GGATG-TTGTCT--C-TGTCACGAATGAAG-T-G-T-T--GA-C-T--GACTTGGTTC-ACCG--TATTTAT-AC-CCTACTGCTTC-G-TTC-CCGA----T--TGGAT-ATGATTGAGCG-TTA-TG-A--TTGGGTTAG-AAA-TCTAGCTATTTG-A--TT-GGT-CAGT-G-TATT-GGTAG-G-TTTCAA-T-C--CA-C--TTCCGGATTCAC-AA--CTTA-A-AC------TGTATTA----A-AAGGAAT-AT-ATAAGAT--ATATACACA-TGATG-----AAA--ATCAA-TA-CCAAACTCGTt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|22 ): ATAACTCGTACAAGAAATGACTAACAAATAT