lowQualScore : 1 1 11111 1111111 11111 1111 1 11 1 55 11 11
lowQualScore : 5 5 0 66 0 888 5 0 5 66 5 5 5 4 4 4 4 4 66 66 4 6666 4 4 4 4 0 00000 4 4 99 4 4 4 4 55 4 7777777 4 55 4 1 4 44 55 777 4 1 1 8 4 11111 3333 66 777 66 4 4 5 5 3 6 8 11 8 8 6 7 7 00 44 88
lowQualScore : . . . .. . ... . . . .. . . . . . . . . .. .. . .... . . . . . ..... . . .. . . . . .. . ....... . .. . . . .. .. ... . . . . . ..... .... .. ... .. . . . . . . . .. . . . . . .. .. ..
lowQualScore : 0 0 4 99 0 888 0 0 0 99 0 0 0 4 4 4 4 4 11 11 4 1111 0 0 0 0 1 00000 0 0 55 0 0 0 0 55 0 0000000 0 55 4 1 4 66 66 888 4 1 9 9 4 11111 9999 11 888 11 4 4 0 7 3 7 0 00 0 0 0 0 3 00 00 33
consensus : AAT-AA-TAGAATT--GGCCCGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-GGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AGTTTTACATTTATTGATTGCAAAA-GGTAACAA--TACACA
Reference ( gi|5 ) : AAT-AA-TAGAATT--GGCCTGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AATTTTACATTAATTGA--GCAAAG-GGTAACAA--TACACA
gi|4 : AAT-AA-TAGAATT--GGCACGA-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGT-A-CAT-AGA-C-GG--TG--GAA-GT--G-T-A-A-TA-ATTTTA-----G-TATATATAGGGCA-G--ATA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-TTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-GT--G-CA-AGTTTTACATTTATTGATTGCAAAA-AGTAACAA--TACACA
gi|7 : attAAT-AA-TAGAACT--GGCCTGG-CTGA---C-AT-GACC-CAG--TCCCAGG-TTTGGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAG-AGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAGCAG-TTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGAT----A--G---GCTG--CTTA-GAAG-CG-A-ATTtgtatatggtgga
gi|6 : attaAAT-AAATAGAATT--GGCCCGGGCTGA---C-AT-GACC-CAG--CCCAAGG-TT-GGGA-TTTAGC-A-CAT-GGA-C-GG--TG--GAA-CT--T-A-A-A-TA-ATTTCA-----G-CATATACA-GACATG--ACA-G-CAGGAGACA-TTGACC-TACA-CTACGA-------GA-GGAGAGATGAACATAACAG-CTG-CCACCAATGG-GTA-CCCCAGTA-GGG---A-T-TCGAACCTTAGCTG---TGCG-CTGTAAT-----CCCTGTTC---A--G---GCTG--C-TA-GCAG-CGAA-ATTA-AC-AAGAGTG-ATGAG-CA-AGT
gi|8 : gattAAT-AA-TAGAATT--G-CCCGG-CTGA---CCATTGACC-CAG--GCCCTAG-TT-GGGA-TTTAGCCA-CATTGGA-C-GG--TG--GAA-CT--G-TTA-A-TA-ATTTTA-----G-CATATACAGGACA-GA-ACA-G-CAGGAGACA-TTGA-C-T--A-CTACCA-------GA-G--GAGAGAAAC-TAACAGCCTGCCCAACAATGGTATA-GCCCATTA--GG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAA-----TCCTGTT----A--G---GCTG--CTTA-GCAG-CG-
gi|9 : attAATGAA-TAGA-TT--GGCCCGG--TGA---C-AT-GAAC-CAG--CTCCAGG-T--GGGA-TTTAGC-A-CAT-GGAGC-GG--TG--GA--CT--A-T-AGA-TA-ATT--A-----GGCATATACAGGACA-G--ACACG-CAGGAGACA-TTGACC-T--A-CTACCAA------GA-G--GAGATGA-CATAACA--CTGCCCAC-AATGG-GTA-GCCCAGTA-GGG---AGTGTCGAAC--TAGCTGGCTTGCG-CTGTAAT-----CCCTGTT----A--GGACGCTG--CTTA-GCAG-C
gi|1 : attAAT-AA-TAGAATTAAGACCTGG-CTGGGAGC-AT-GACCGCAAGCCCCCAGGATT-GGGACTTTAGC-AGCAT-AGA-C-GG--TGAGGAA-CTTGG-T-A-AATATGTTTAA-----G-CA-A-ACCATGCA-G--ACA-GGCAGGAGACAATTGACCAT--A-CTACCA-------GA-G--AGAATGAACATAGCAG-CTGCCCACCAATGG-TTAGGCCCAGTATGAGGATA-TGTCG-ACCTTAGCTGGCTTGCG-CTGTCATATCTGCACTGTT----AGGG---GCTG--CTTAGGCAGAAG-A-ATTATACGAAGAGTG-AT--GACA-AGTTTTACATTTA-TGATTGCAAAGTGGTTACAA--TAC
gi|3 : gcgcgactccaccaggtcccgccctcacgcaaagccgaagagcgacggggtgtagatacacagcccattttaaaagcacaagaaaaacagaatcgaggcagcaaatgtaagccaaggagcggctctgacacagcagaaggactgaaaatggcgaaggtacccagggtgatgcatcgaggaatctaaaaatagaaaagaaaacaagcaaaacatgtcctaaaatcagagtgaaaacagactaagggatagggtggggtgttatatgtttcgttatggccgcctcaggtttgaaagagggtgcgagataacgtcgtaccaggatttgttttgatttaggaggctgacaactaaatcgacgagaattaattacagagaacgaataaagacgccaaaaactgagatagccatgaaggataccaatctatattagattgtaaagactatttgatatgcatgcaaataatcttgattaAT-AA-TGGATTG--GGCCTGGTCTGA---C-GTTGACC-CAA--GTCCAG--TT-GGGA-TTTAG--A-CAT-AGA-C-GGGGTG--GAAACT--GGT-A-A-TA-ATTTTA-----G-CATATACAGGGCA-GTAATA-G-CAGGA-ACA-TTGACC-T--ATCTAC---------AA-G--GAGATGAACATAGTAG-CTG-CCACCAAT-G-GTA--CCCAGTA--GG---A-T-TCG-ACCTTAGCTGGC-TGCGCCTGT-AT-----CCCTGTTGGTGG--G---ACTGGCTTTA-GCAG-CG-ATATAAGAC-AAGAGTGAAT--G-CATAGTTTTACATTTATTGAT-TCTAAA-GGTAACAATGTACACAc
gi|13 : tAT-AA-TAGAATT--GGCCTGG-CTGA---C-AT-GACC-CAG--CCCCATG-TT-GAGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-TATATACAGGGCA-G--ACA-G-CAGGAAACA-TTCACC-T--A-CTACCA-------GA-G--GAGATGAACATAACgtatgatggtggaaataacgccgcaactttgtgtggggaac
gi|10 : TATC-A-CAT-GGG-CTGG--TG--GAA-CT--C-C-T-T-TT-ACTTTAATGCTG-CATATACAGAACA-G--ACC-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-A--GTGTTGAACATAACGA-TTTCCCACCATTGG-GTA-ACCCAGTA-GTG---A-TGTCAAACCGTTGTTGAC-TGTA-CTGTAAT-----CCCAGTT----A--A---GCTG--CTTA-ACAG-CG-G-ATTA-AC-AAGA
gi|11 : tgT--G-T-A-A-TA-ATTTAA-----G-TATATACTGAGCA-G--ACA-G-TAGGAGACA-TTGACC-T--A-CTACCAAGGAGATGANG--GAGATAAACACAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTTGCTGAC-TGCA-CTGTAAT-----TCCAGGT----A--G---GCTC--CTTA-GCAG-CG-A-TGTA-AC-AAGAATG-AT--G-CA-AGTTTTACA
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): GCGAAAGAGCGAAACGGTGATTGAATATACAGCCCATTTTTAAAGCAAGAAAAACATAAATCGAGCAGCAAATGTACGCCAAGGAACGGCTATCGCAGCAGACGCTTGAAAATGGCGATGGTCCAGGTGATGTGATCGGGATCTAAAAATAGAAAGAAAAAGCAGCAATACATGTCTATAAAGTACCGATGGATAAGACAAGATAAGGGGATGGGTGGGTGGGTTTATTGTTCGTTATGGTGACCCAGTTTGTAAGAGTGCGAGATATTCGTGACCGGATCTGAGTTGATTTTAGGTGTGACACTCATTACGAAGAATTAGTTGATTAAACGATACCAAAAAGAGTGCCAGGCCAATCTATATTAATTTGGACTATTTGATATCATCAAATAAT
Unaligned ( gi|12 ): CCGACCTCAGGTTTGAAGAGGGTGCGAGATAAGTCGAACTAGGATTTGTTGATTTTAGGGGTGACAATTCATACGAGAATTACTTCAGAAACGATACCAAAACTGAGTGCCAGGCCAATCTATATTAATTGTGGACTATTTGATATGCATCAAATAATCT
Unaligned ( gi|14 ): TTCGTAAACATGAGATTTGAATTGCATTTTATCCAGGATTAATTCGTAAACAGTGCAAAATTAGAGCTCCATGCAATCAAAATTAATTGTGGACTGTTTGATAAGCATCAAATAATC
Unaligned ( gi|15 ): GATAGCTCATACAAGGTTTGATTCGTAAACAATAGGAGTTGGCCAATCTTAATTAATTGTGATATGTATCCAATAACTTT
Unaligned ( gi|16 ): ATTAATTTATTAGGCATGATATTAAAGATTAACGAATGCGAGGGCAAATCGGTTGTTTTCTTCAATTAAAGTG
Unaligned ( gi|17 ): TATTTAGATAATGAAGTTTCTCCTTACTATTTTTACAGCTTTTTAT
Alignments
lowQualScore : 1111111 11111 1111 1 1 11
lowQualScore : 4 4 66 8 777 4 8 4 66 4 4 4 4 4 4 4 4 55 55 4 55 3 3 3 3 3 99999 3 3 88 3 3 3 3 55 3 5555555 3 55 4 4 4 4 777 4 0 8 4 00000 2222 55 777 55 4 4 4 5 1 5 6 99 6 6 3 3 2 0 33
lowQualScore : . . .. . ... . . . .. . . . . . . . . .. .. . .. . . . . . ..... . . .. . . . . .. . ....... . .. . . . . ... . . . . ..... .... .. ... .. . . . . . . . .. . . . . . . ..
lowQualScore : 4 4 11 9 888 4 9 4 11 4 4 4 0 0 0 0 0 55 55 0 00 6 6 6 6 6 11111 6 6 66 6 6 6 6 00 6 5555555 6 00 0 0 0 0 000 0 8 0 0 00000 5555 55 000 55 0 0 4 0 4 7 7 22 7 7 2 2 5 0 88
consensus : AAT-AA-TAGAATT--GGCCCGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AGTTTTACATTTATTGATTGCAAAG-GGTAACAA--TACACA
Reference ( family-5363 ) : AAT-AA-TAGAATT--GGCCCGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-GGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AGTTTTACATTTATTGATTGCAAAA-GGTAACAA--TACACA
gi|1 : AAT-AA-TAGAATTAAGACCTGG-CTGGGAGC-AT-GACCGCAAGCCCCCAGGATT-GGGACTTTAGC-AGCAT-AGA-C-GG--TGAGGAA-CTTGG-T-A-AATATGTTTAA-----G-CA-A-ACCATGCA-G--ACA-GGCAGGAGACAATTGACCAT--A-CTACCA-------GA-G--AGAATGAACATAGCAG-CTGCCCACCAATGG-TTAGGCCCAGTATGAGGATA-TGTCG-ACCTTAGCTGGCTTGCG-CTGTCATATCTGCACTGTT----AGGG---GCTG--CTTAGGCAGAAG-A-ATTATACGAAGAGTG-AT--GACA-AGTTTTACATTTA-TGATTGCAAAGTGGTTACAA--TAC
gi|10 : gcgcgactccaccaggtcccgccctcacgcaaagccgaagagcgacggggtgtagatacacagcccattttaaaagcacaagaaaaacagaatcgaggcagcaaatgtaagccaaggagcggctctgacacagcagaaggactgaaaatggcgaaggtacccagggtgatgcatcgaggaatctaaaaatagaaaagaaaacaagcaaaacatgtcctaaaatcagagtgaaaacagactaagggatagggtggggtgttatatgtttcgttatggccgcctcaggtttgaaagagggtgcgagataacgtcgtaccaggatttgttttgatttaggaggctgacaactaaatcgacgagaattaattacagagaacgaataaagacgccaaaaactgagatagccatgaaggataccaatctatattagattgtaaagactatttgatatgcatgcaaataatcttgattaTATC-A-CAT-GGG-CTGG--TG--GAA-CT--C-C-T-T-TT-ACTTTAATGCTG-CATATACAGAACA-G--ACC-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-A--GTGTTGAACATAACGA-TTTCCCACCATTGG-GTA-ACCCAGTA-GTG---A-TGTCAAACCGTTGTTGAC-TGTA-CTGTAAT-----CCCAGTT----A--A---GCTG--CTTA-ACAG-CG-G-ATTA-AC-AAGAc
gi|11 : tgT--G-T-A-A-TA-ATTTAA-----G-TATATACTGAGCA-G--ACA-G-TAGGAGACA-TTGACC-T--A-CTACCAAGGAGATGANG--GAGATAAACACAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTTGCTGAC-TGCA-CTGTAAT-----TCCAGGT----A--G---GCTC--CTTA-GCAG-CG-A-TGTA-AC-AAGAATG-AT--G-CA-AGTTTTACA
gi|13 : AT-AA-TAGAATT--GGCCTGG-CTGA---C-AT-GACC-CAG--CCCCATG-TT-GAGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-TATATACAGGGCA-G--ACA-G-CAGGAAACA-TTCACC-T--A-CTACCA-------GA-G--GAGATGAACATAAC
gi|3 : AT-AA-TGGATTG--GGCCTGGTCTGA---C-GTTGACC-CAA--GTCCAG--TT-GGGA-TTTAG--A-CAT-AGA-C-GGGGTG--GAAACT--GGT-A-A-TA-ATTTTA-----G-CATATACAGGGCA-GTAATA-G-CAGGA-ACA-TTGACC-T--ATCTAC---------AA-G--GAGATGAACATAGTAG-CTG-CCACCAAT-G-GTA--CCCAGTA--GG---A-T-TCG-ACCTTAGCTGGC-TGCGCCTGT-AT-----CCCTGTTGGTGG--G---ACTGGCTTTA-GCAG-CG-ATATAAGAC-AAGAGTGAAT--G-CATAGTTTTACATTTATTGATT-CTAAA-GGTAACAATGTACACA
gi|4 : tAAT-AA-TAGAATT--GGCACGA-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGT-A-CAT-AGA-C-GG--TG--GAA-GT--G-T-A-A-TA-ATTTTA-----G-TATATATAGGGCA-G--ATA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-TTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-GT--G-CA-AGTTTTACATTTATTGATTGCAAAA-AGTAACAA--TACACAgtatgatggtggaaataacgccgcaactttgtgtggggaac
gi|5 : attAAT-AA-TAGAATT--GGCCTGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AATTTTACATTAATTGA--GCAAAG-GGTAACAA--TACACAtgtatatggtgga
gi|6 : AAT-AAATAGAATT--GGCCCGGGCTGA---C-AT-GACC-CAG--CCCAAGG-TT-GGGA-TTTAGC-A-CAT-GGA-C-GG--TG--GAA-CT--T-A-A-A-TA-ATTTCA-----G-CATATACA-GACATG--ACA-G-CAGGAGACA-TTGACC-TACA-CTACGA-------GA-GGAGAGATGAACATAACAG-CTG-CCACCAATGG-GTA-CCCCAGTA-GGG---A-T-TCGAACCTTAGCTG---TGCG-CTGTAAT-----CCCTGTTC---A--G---GCTG--C-TA-GCAG-CGAA-ATTA-AC-AAGAGTG-ATGAG-CA-AGT
gi|7 : gattAAT-AA-TAGAACT--GGCCTGG-CTGA---C-AT-GACC-CAG--TCCCAGG-TTTGGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAG-AGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAGCAG-TTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGAT----A--G---GCTG--CTTA-GAAG-CG-A-ATT
gi|8 : attaAAT-AA-TAGAATT--G-CCCGG-CTGA---CCATTGACC-CAG--GCCCTAG-TT-GGGA-TTTAGCCA-CATTGGA-C-GG--TG--GAA-CT--G-TTA-A-TA-ATTTTA-----G-CATATACAGGACA-GA-ACA-G-CAGGAGACA-TTGA-C-T--A-CTACCA-------GA-G--GAGAGAAAC-TAACAGCCTGCCCAACAATGGTATA-GCCCATTA--GG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAA-----TCCTGTT----A--G---GCTG--CTTA-GCAG-CG-
gi|9 : attAATGAA-TAGA-TT--GGCCCGG--TGA---C-AT-GAAC-CAG--CTCCAGG-T--GGGA-TTTAGC-A-CAT-GGAGC-GG--TG--GA--CT--A-T-AGA-TA-ATT--A-----GGCATATACAGGACA-G--ACACG-CAGGAGACA-TTGACC-T--A-CTACCAA------GA-G--GAGATGA-CATAACA--CTGCCCAC-AATGG-GTA-GCCCAGTA-GGG---AGTGTCGAAC--TAGCTGGCTTGCG-CTGTAAT-----CCCTGTT----A--GGACGCTG--CTTA-GCAG-C
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GCGAAAGAGCGAAACGGTGATTGAATATACAGCCCATTTTTAAAGCAAGAAAAACATAAATCGAGCAGCAAATGTACGCCAAGGAACGGCTATCGCAGCAGACGCTTGAAAATGGCGATGGTCCAGGTGATGTGATCGGGATCTAAAAATAGAAAGAAAAAGCAGCAATACATGTCTATAAAGTACCGATGGATAAGACAAGATAAGGGGATGGGTGGGTGGGTTTATTGTTCGTTATGGTGACCCAGTTTGTAAGAGTGCGAGATATTCGTGACCGGATCTGAGTTGATTTTAGGTGTGACACTCATTACGAAGAATTAGTTGATTAAACGATACCAAAAAGAGTGCCAGGCCAATCTATATTAATTTGGACTATTTGATATCATCAAATAAT
Unaligned ( gi|12 ): CCGACCTCAGGTTTGAAGAGGGTGCGAGATAAGTCGAACTAGGATTTGTTGATTTTAGGGGTGACAATTCATACGAGAATTACTTCAGAAACGATACCAAAACTGAGTGCCAGGCCAATCTATATTAATTGTGGACTATTTGATATGCATCAAATAATCT
Unaligned ( gi|14 ): TTCGTAAACATGAGATTTGAATTGCATTTTATCCAGGATTAATTCGTAAACAGTGCAAAATTAGAGCTCCATGCAATCAAAATTAATTGTGGACTGTTTGATAAGCATCAAATAATC
Unaligned ( gi|15 ): GATAGCTCATACAAGGTTTGATTCGTAAACAATAGGAGTTGGCCAATCTTAATTAATTGTGATATGTATCCAATAACTTT
Unaligned ( gi|16 ): ATTAATTTATTAGGCATGATATTAAAGATTAACGAATGCGAGGGCAAATCGGTTGTTTTCTTCAATTAAAGTG
Unaligned ( gi|17 ): TATTTAGATAATGAAGTTTCTCCTTACTATTTTTACAGCTTTTTAT
Alignments
lowQualScore : 1111111 11111 1111 1 11 11
lowQualScore : 4 4 66 8 777 4 8 4 66 4 4 4 4 4 4 4 4 55 55 4 55 3 3 3 3 3 99999 3 3 88 3 3 3 3 55 3 5555555 3 55 4 4 4 4 777 4 0 8 4 00000 2222 55 777 55 4 4 4 5 1 5 6 99 6 6 3 3 66 33
lowQualScore : . . .. . ... . . . .. . . . . . . . . .. .. . .. . . . . . ..... . . .. . . . . .. . ....... . .. . . . . ... . . . . ..... .... .. ... .. . . . . . . . .. . . . . .. ..
lowQualScore : 4 4 11 9 888 4 9 4 11 4 4 4 0 0 0 0 0 55 55 0 00 6 6 6 6 6 11111 6 6 66 6 6 6 6 00 6 5555555 6 00 0 0 0 0 000 0 8 0 0 00000 5555 55 000 55 0 0 4 0 4 7 7 22 7 7 2 2 55 88
consensus : AAT-AA-TAGAATT--GGCCCGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AGTTTTACATTTATTGATTGCAAAG-GGTAACAA--TACACA
Reference ( family-5363 ) : AAT-AA-TAGAATT--GGCCCGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AGTTTTACATTTATTGATTGCAAAG-GGTAACAA--TACACA
gi|1 : AAT-AA-TAGAATTAAGACCTGG-CTGGGAGC-AT-GACCGCAAGCCCCCAGGATT-GGGACTTTAGC-AGCAT-AGA-C-GG--TGAGGAA-CTTGG-T-A-AATATGTTTAA-----G-CA-A-ACCATGCA-G--ACA-GGCAGGAGACAATTGACCAT--A-CTACCA-------GA-G--AGAATGAACATAGCAG-CTGCCCACCAATGG-TTAGGCCCAGTATGAGGATA-TGTCG-ACCTTAGCTGGCTTGCG-CTGTCATATCTGCACTGTT----AGGG---GCTG--CTTAGGCAGAAG-A-ATTATACGAAGAGTG-AT--GACA-AGTTTTACATTTA-TGATTGCAAAGTGGTTACAA--TAC
gi|10 : gcgcgactccaccaggtcccgccctcacgcaaagccgaagagcgacggggtgtagatacacagcccattttaaaagcacaagaaaaacagaatcgaggcagcaaatgtaagccaaggagcggctctgacacagcagaaggactgaaaatggcgaaggtacccagggtgatgcatcgaggaatctaaaaatagaaaagaaaacaagcaaaacatgtcctaaaatcagagtgaaaacagactaagggatagggtggggtgttatatgtttcgttatggccgcctcaggtttgaaagagggtgcgagataacgtcgtaccaggatttgttttgatttaggaggctgacaactaaatcgacgagaattaattacagagaacgaataaagacgccaaaaactgagatagccatgaaggataccaatctatattagattgtaaagactatttgatatgcatgcaaataatcttgattaTATC-A-CAT-GGG-CTGG--TG--GAA-CT--C-C-T-T-TT-ACTTTAATGCTG-CATATACAGAACA-G--ACC-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-A--GTGTTGAACATAACGA-TTTCCCACCATTGG-GTA-ACCCAGTA-GTG---A-TGTCAAACCGTTGTTGAC-TGTA-CTGTAAT-----CCCAGTT----A--A---GCTG--CTTA-ACAG-CG-G-ATTA-AC-AAGAc
gi|11 : tgT--G-T-A-A-TA-ATTTAA-----G-TATATACTGAGCA-G--ACA-G-TAGGAGACA-TTGACC-T--A-CTACCAAGGAGATGANG--GAGATAAACACAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTTGCTGAC-TGCA-CTGTAAT-----TCCAGGT----A--G---GCTC--CTTA-GCAG-CG-A-TGTA-AC-AAGAATG-AT--G-CA-AGTTTTACA
gi|13 : AT-AA-TAGAATT--GGCCTGG-CTGA---C-AT-GACC-CAG--CCCCATG-TT-GAGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-TATATACAGGGCA-G--ACA-G-CAGGAAACA-TTCACC-T--A-CTACCA-------GA-G--GAGATGAACATAAC
gi|3 : AT-AA-TGGATTG--GGCCTGGTCTGA---C-GTTGACC-CAA--GTCCAG--TT-GGGA-TTTAG--A-CAT-AGA-C-GGGGTG--GAAACT--GGT-A-A-TA-ATTTTA-----G-CATATACAGGGCA-GTAATA-G-CAGGA-ACA-TTGACC-T--ATCTAC---------AA-G--GAGATGAACATAGTAG-CTG-CCACCAAT-G-GTA--CCCAGTA--GG---A-T-TCG-ACCTTAGCTGGC-TGCGCCTGT-AT-----CCCTGTTGGTGG--G---ACTGGCTTTA-GCAG-CG-ATATAAGAC-AAGAGTGAAT--G-CATAGTTTTACATTTATTGATTCTAAA--GGTAACAATGTACACA
gi|4 : tAAT-AA-TAGAATT--GGCACGA-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGT-A-CAT-AGA-C-GG--TG--GAA-GT--G-T-A-A-TA-ATTTTA-----G-TATATATAGGGCA-G--ATA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-TTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-GT--G-CA-AGTTTTACATTTATTGATTGCAAAA-AGTAACAA--TACACAgtatgatggtggaaataacgccgcaactttgtgtggggaac
gi|5 : attAAT-AA-TAGAATT--GGCCTGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AATTTTACATTAATTGA--GCAAAG-GGTAACAA--TACACAtgtatatggtgga
gi|6 : AAT-AAATAGAATT--GGCCCGGGCTGA---C-AT-GACC-CAG--CCCAAGG-TT-GGGA-TTTAGC-A-CAT-GGA-C-GG--TG--GAA-CT--T-A-A-A-TA-ATTTCA-----G-CATATACA-GACATG--ACA-G-CAGGAGACA-TTGACC-TACA-CTACGA-------GA-GGAGAGATGAACATAACAG-CTG-CCACCAATGG-GTA-CCCCAGTA-GGG---A-T-TCGAACCTTAGCTG---TGCG-CTGTAAT-----CCCTGTTC---A--G---GCTG--C-TA-GCAG-CGAA-ATTA-AC-AAGAGTG-ATGAG-CA-AGT
gi|7 : gattAAT-AA-TAGAACT--GGCCTGG-CTGA---C-AT-GACC-CAG--TCCCAGG-TTTGGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAG-AGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAGCAG-TTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGAT----A--G---GCTG--CTTA-GAAG-CG-A-ATT
gi|8 : attaAAT-AA-TAGAATT--G-CCCGG-CTGA---CCATTGACC-CAG--GCCCTAG-TT-GGGA-TTTAGCCA-CATTGGA-C-GG--TG--GAA-CT--G-TTA-A-TA-ATTTTA-----G-CATATACAGGACA-GA-ACA-G-CAGGAGACA-TTGA-C-T--A-CTACCA-------GA-G--GAGAGAAAC-TAACAGCCTGCCCAACAATGGTATA-GCCCATTA--GG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAA-----TCCTGTT----A--G---GCTG--CTTA-GCAG-CG-
gi|9 : attAATGAA-TAGA-TT--GGCCCGG--TGA---C-AT-GAAC-CAG--CTCCAGG-T--GGGA-TTTAGC-A-CAT-GGAGC-GG--TG--GA--CT--A-T-AGA-TA-ATT--A-----GGCATATACAGGACA-G--ACACG-CAGGAGACA-TTGACC-T--A-CTACCAA------GA-G--GAGATGA-CATAACA--CTGCCCAC-AATGG-GTA-GCCCAGTA-GGG---AGTGTCGAAC--TAGCTGGCTTGCG-CTGTAAT-----CCCTGTT----A--GGACGCTG--CTTA-GCAG-C
blockSeqs : G A . T . C T . . . T . C . T G T GG . A . G T G . . ATGCT G T TA C . . . AC T AGGAGAT N GA C T . . . G T C . GGTG . GAC GC . . A T G . A GA . T T T A TG
blockSeqs : . . . G . . T . . . . . . . . . . . . . . . . . . . . . . A . . . . . . A . . . . . . . . . . . C . . . . . . . . . . . . . T T G .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqCons : ** *** ** ** ** *** ***** **
originalCons : AAT-AA-TAGAATT--GGCCCGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AGTTTTACATTTATTGATTGCAAAG-GGTAACAA--TACACA
finalCons : AAT-AA-TAGAATT--GGCCCGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AGTTTTACATTTATTGATTGCAAAG-GGTAACAA--TACACA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GCGAAAGAGCGAAACGGTGATTGAATATACAGCCCATTTTTAAAGCAAGAAAAACATAAATCGAGCAGCAAATGTACGCCAAGGAACGGCTATCGCAGCAGACGCTTGAAAATGGCGATGGTCCAGGTGATGTGATCGGGATCTAAAAATAGAAAGAAAAAGCAGCAATACATGTCTATAAAGTACCGATGGATAAGACAAGATAAGGGGATGGGTGGGTGGGTTTATTGTTCGTTATGGTGACCCAGTTTGTAAGAGTGCGAGATATTCGTGACCGGATCTGAGTTGATTTTAGGTGTGACACTCATTACGAAGAATTAGTTGATTAAACGATACCAAAAAGAGTGCCAGGCCAATCTATATTAATTTGGACTATTTGATATCATCAAATAAT
Unaligned ( gi|12 ): CCGACCTCAGGTTTGAAGAGGGTGCGAGATAAGTCGAACTAGGATTTGTTGATTTTAGGGGTGACAATTCATACGAGAATTACTTCAGAAACGATACCAAAACTGAGTGCCAGGCCAATCTATATTAATTGTGGACTATTTGATATGCATCAAATAATCT
Unaligned ( gi|14 ): TTCGTAAACATGAGATTTGAATTGCATTTTATCCAGGATTAATTCGTAAACAGTGCAAAATTAGAGCTCCATGCAATCAAAATTAATTGTGGACTGTTTGATAAGCATCAAATAATC
Unaligned ( gi|15 ): GATAGCTCATACAAGGTTTGATTCGTAAACAATAGGAGTTGGCCAATCTTAATTAATTGTGATATGTATCCAATAACTTT
Unaligned ( gi|16 ): ATTAATTTATTAGGCATGATATTAAAGATTAACGAATGCGAGGGCAAATCGGTTGTTTTCTTCAATTAAAGTG
Unaligned ( gi|17 ): TATTTAGATAATGAAGTTTCTCCTTACTATTTTTACAGCTTTTTAT
Alignments
lowQualScore : 1111111 11111 1111 1 11 11
lowQualScore : 4 4 66 8 777 4 8 4 66 4 4 4 4 4 4 4 4 55 55 4 55 3 3 3 3 3 99999 3 3 88 3 3 3 3 55 3 5555555 3 55 4 4 4 4 777 4 0 8 4 00000 2222 55 777 55 4 4 4 5 1 5 6 99 6 6 3 3 66 33
lowQualScore : . . .. . ... . . . .. . . . . . . . . .. .. . .. . . . . . ..... . . .. . . . . .. . ....... . .. . . . . ... . . . . ..... .... .. ... .. . . . . . . . .. . . . . .. ..
lowQualScore : 4 4 11 9 888 4 9 4 11 4 4 4 0 0 0 0 0 55 55 0 00 6 6 6 6 6 11111 6 6 66 6 6 6 6 00 6 5555555 6 00 0 0 0 0 000 0 8 0 0 00000 5555 55 000 55 0 0 4 0 4 7 7 22 7 7 2 2 55 88
consensus : AAT-AA-TAGAATT--GGCCCGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AGTTTTACATTTATTGATTGCAAAG-GGTAACAA--TACACA
Reference ( family-5363 ) : AAT-AA-TAGAATT--GGCCCGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AGTTTTACATTTATTGATTGCAAAG-GGTAACAA--TACACA
gi|1 : AAT-AA-TAGAATTAAGACCTGG-CTGGGAGC-AT-GACCGCAAGCCCCCAGGATT-GGGACTTTAGC-AGCAT-AGA-C-GG--TGAGGAA-CTTGG-T-A-AATATGTTTAA-----G-CA-A-ACCATGCA-G--ACA-GGCAGGAGACAATTGACCAT--A-CTACCA-------GA-G--AGAATGAACATAGCAG-CTGCCCACCAATGG-TTAGGCCCAGTATGAGGATA-TGTCG-ACCTTAGCTGGCTTGCG-CTGTCATATCTGCACTGTT----AGGG---GCTG--CTTAGGCAGAAG-A-ATTATACGAAGAGTG-AT--GACA-AGTTTTACATTTA-TGATTGCAAAGTGGTTACAA--TAC
gi|10 : gcgcgactccaccaggtcccgccctcacgcaaagccgaagagcgacggggtgtagatacacagcccattttaaaagcacaagaaaaacagaatcgaggcagcaaatgtaagccaaggagcggctctgacacagcagaaggactgaaaatggcgaaggtacccagggtgatgcatcgaggaatctaaaaatagaaaagaaaacaagcaaaacatgtcctaaaatcagagtgaaaacagactaagggatagggtggggtgttatatgtttcgttatggccgcctcaggtttgaaagagggtgcgagataacgtcgtaccaggatttgttttgatttaggaggctgacaactaaatcgacgagaattaattacagagaacgaataaagacgccaaaaactgagatagccatgaaggataccaatctatattagattgtaaagactatttgatatgcatgcaaataatcttgattaTATC-A-CAT-GGG-CTGG--TG--GAA-CT--C-C-T-T-TT-ACTTTAATGCTG-CATATACAGAACA-G--ACC-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-A--GTGTTGAACATAACGA-TTTCCCACCATTGG-GTA-ACCCAGTA-GTG---A-TGTCAAACCGTTGTTGAC-TGTA-CTGTAAT-----CCCAGTT----A--A---GCTG--CTTA-ACAG-CG-G-ATTA-AC-AAGAc
gi|11 : tgT--G-T-A-A-TA-ATTTAA-----G-TATATACTGAGCA-G--ACA-G-TAGGAGACA-TTGACC-T--A-CTACCAAGGAGATGANG--GAGATAAACACAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTTGCTGAC-TGCA-CTGTAAT-----TCCAGGT----A--G---GCTC--CTTA-GCAG-CG-A-TGTA-AC-AAGAATG-AT--G-CA-AGTTTTACA
gi|13 : AT-AA-TAGAATT--GGCCTGG-CTGA---C-AT-GACC-CAG--CCCCATG-TT-GAGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-TATATACAGGGCA-G--ACA-G-CAGGAAACA-TTCACC-T--A-CTACCA-------GA-G--GAGATGAACATAAC
gi|3 : AT-AA-TGGATTG--GGCCTGGTCTGA---C-GTTGACC-CAA--GTCCAG--TT-GGGA-TTTAG--A-CAT-AGA-C-GGGGTG--GAAACT--GGT-A-A-TA-ATTTTA-----G-CATATACAGGGCA-GTAATA-G-CAGGA-ACA-TTGACC-T--ATCTAC---------AA-G--GAGATGAACATAGTAG-CTG-CCACCAAT-G-GTA--CCCAGTA--GG---A-T-TCG-ACCTTAGCTGGC-TGCGCCTGT-AT-----CCCTGTTGGTGG--G---ACTGGCTTTA-GCAG-CG-ATATAAGAC-AAGAGTGAAT--G-CATAGTTTTACATTTATTGATTCTAAA--GGTAACAATGTACACA
gi|4 : tAAT-AA-TAGAATT--GGCACGA-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGT-A-CAT-AGA-C-GG--TG--GAA-GT--G-T-A-A-TA-ATTTTA-----G-TATATATAGGGCA-G--ATA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-TTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-GT--G-CA-AGTTTTACATTTATTGATTGCAAAA-AGTAACAA--TACACAgtatgatggtggaaataacgccgcaactttgtgtggggaac
gi|5 : attAAT-AA-TAGAATT--GGCCTGG-CTGA---C-AT-GACC-CAG--CCCCAGG-TT-GGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAGGAGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAACAG-CTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGTT----A--G---GCTG--CTTA-GCAG-CG-A-ATTA-AC-AAGAGTG-AT--G-CA-AATTTTACATTAATTGA--GCAAAG-GGTAACAA--TACACAtgtatatggtgga
gi|6 : AAT-AAATAGAATT--GGCCCGGGCTGA---C-AT-GACC-CAG--CCCAAGG-TT-GGGA-TTTAGC-A-CAT-GGA-C-GG--TG--GAA-CT--T-A-A-A-TA-ATTTCA-----G-CATATACA-GACATG--ACA-G-CAGGAGACA-TTGACC-TACA-CTACGA-------GA-GGAGAGATGAACATAACAG-CTG-CCACCAATGG-GTA-CCCCAGTA-GGG---A-T-TCGAACCTTAGCTG---TGCG-CTGTAAT-----CCCTGTTC---A--G---GCTG--C-TA-GCAG-CGAA-ATTA-AC-AAGAGTG-ATGAG-CA-AGT
gi|7 : gattAAT-AA-TAGAACT--GGCCTGG-CTGA---C-AT-GACC-CAG--TCCCAGG-TTTGGGA-TTTAGC-A-CAT-AGA-C-GG--TG--GAA-CT--G-T-A-A-TA-ATTTTA-----G-CATATACAGGGCA-G--ACA-G-CAG-AGACA-TTGACC-T--A-CTACCA-------GA-G--GAGATGAACATAGCAG-TTGCCCACCAATGG-GTA-GCCCAGTA-GGG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAT-----CCCTGAT----A--G---GCTG--CTTA-GAAG-CG-A-ATT
gi|8 : attaAAT-AA-TAGAATT--G-CCCGG-CTGA---CCATTGACC-CAG--GCCCTAG-TT-GGGA-TTTAGCCA-CATTGGA-C-GG--TG--GAA-CT--G-TTA-A-TA-ATTTTA-----G-CATATACAGGACA-GA-ACA-G-CAGGAGACA-TTGA-C-T--A-CTACCA-------GA-G--GAGAGAAAC-TAACAGCCTGCCCAACAATGGTATA-GCCCATTA--GG---A-TGTCGAACCTTAGCTGGC-TGCG-CTGTAAA-----TCCTGTT----A--G---GCTG--CTTA-GCAG-CG-
gi|9 : attAATGAA-TAGA-TT--GGCCCGG--TGA---C-AT-GAAC-CAG--CTCCAGG-T--GGGA-TTTAGC-A-CAT-GGAGC-GG--TG--GA--CT--A-T-AGA-TA-ATT--A-----GGCATATACAGGACA-G--ACACG-CAGGAGACA-TTGACC-T--A-CTACCAA------GA-G--GAGATGA-CATAACA--CTGCCCAC-AATGG-GTA-GCCCAGTA-GGG---AGTGTCGAAC--TAGCTGGCTTGCG-CTGTAAT-----CCCTGTT----A--GGACGCTG--CTTA-GCAG-C
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GCGAAAGAGCGAAACGGTGATTGAATATACAGCCCATTTTTAAAGCAAGAAAAACATAAATCGAGCAGCAAATGTACGCCAAGGAACGGCTATCGCAGCAGACGCTTGAAAATGGCGATGGTCCAGGTGATGTGATCGGGATCTAAAAATAGAAAGAAAAAGCAGCAATACATGTCTATAAAGTACCGATGGATAAGACAAGATAAGGGGATGGGTGGGTGGGTTTATTGTTCGTTATGGTGACCCAGTTTGTAAGAGTGCGAGATATTCGTGACCGGATCTGAGTTGATTTTAGGTGTGACACTCATTACGAAGAATTAGTTGATTAAACGATACCAAAAAGAGTGCCAGGCCAATCTATATTAATTTGGACTATTTGATATCATCAAATAAT
Unaligned ( gi|12 ): CCGACCTCAGGTTTGAAGAGGGTGCGAGATAAGTCGAACTAGGATTTGTTGATTTTAGGGGTGACAATTCATACGAGAATTACTTCAGAAACGATACCAAAACTGAGTGCCAGGCCAATCTATATTAATTGTGGACTATTTGATATGCATCAAATAATCT
Unaligned ( gi|14 ): TTCGTAAACATGAGATTTGAATTGCATTTTATCCAGGATTAATTCGTAAACAGTGCAAAATTAGAGCTCCATGCAATCAAAATTAATTGTGGACTGTTTGATAAGCATCAAATAATC
Unaligned ( gi|15 ): GATAGCTCATACAAGGTTTGATTCGTAAACAATAGGAGTTGGCCAATCTTAATTAATTGTGATATGTATCCAATAACTTT
Unaligned ( gi|16 ): ATTAATTTATTAGGCATGATATTAAAGATTAACGAATGCGAGGGCAAATCGGTTGTTTTCTTCAATTAAAGTG
Unaligned ( gi|17 ): TATTTAGATAATGAAGTTTCTCCTTACTATTTTTACAGCTTTTTAT