lowQualScore : 555555555555 1 11111 11111111 11111 1 11 2222222222 111 11 11 444 1 11
lowQualScore : 8 2 333333333333 5 0 8 3 44444 88888888 88 8 5 8 8 33333 5 11 0 7777777777 111 88 5 11 33 8 8 3 555 6 5 22
lowQualScore : . . ............ . . . . ..... ........ .. . . . . ..... . .. . .......... ... .. . .. .. . . . ... . . ..
lowQualScore : 8 5 000000000000 2 2 8 2 44444 00000000 88 0 0 0 0 88888 8 00 8 8888888888 666 88 0 00 88 0 0 0 000 0 6 00
consensus : TGCGCGGATCTAGAAGGG----------GGGGGGG-GGGTCCGNACCCCCCCCCCC-CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAA-TATCGNC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAA-GGTTGGA---CCCCCCCCCTGG-AAAAATTTTCTGGATCCGCGCC
Reference ( gi|4 ) : TGCGCGGATCTAGAAGGG----------GTGGGGGTGGGTCCGGACCCCCCCCCCC-CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAA-TATCGCC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAA-GGTTGAACCCCCCCCCCCCTGG-AAAAATTTTCTGGATCCGCGCC
gi|5 : TGCGCGGATCTATAAGGG----------GGGGGGGGGGGTCCGTACCCC-------CCCCCCCCT--G-GAAT-TTGCAAA-A-T-TAA-TATCGCC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAA--GTTGGA--CACCCCCCCCTGGAAAAAATGTTCTGGA--CGCGC
gi|8 : aTGCGCGGATCTAGAAG----------------------------ACCCCTCCTCCT-CCTC------G-GAAT-GTGAAAA-GGT-ACA-TATCATCATGAT-TTA--T--GACC-----CACAAAAAAAG--AGTTATT-----ACATTTGTG--CA
gi|2 : aGCGCGGATCTAGAGGGGTGGGGTGGGCATGGGGGTGGGTCTGCCCCCCCCCCCCC-CCCCCCTT--GCGAATATTGCAAACGCT-TAA-TATC-TC--GATATTA--CTGAAAC-----TG--AAAAAAT--CTTTGTTATTTCACATTTGTGCCCACTTTCCCACAGTTATACt
gi|6 : gGCGAATCTA-AAGGG----------GGGGGGG-GGGTCCGGACCCCCCC------------T--G-GAAT-TTGCAAA-GCT-TAAATATCGGC--GAT-TTA--CTGGAAA-----TGGAAAAAAATTAAGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACTGTAATGGTGGAA----CCCCGCCCTGG-AAAAATTTTCTGGAT--GCGCCgtcaaacagaaatcatccacaaaatagacataataaataactggtgtgtgttgatgggtttttttacttaaggttggaacgccgcccccttgggaaaaagtttctggatccgcgc
gi|10 : gCCCCCCCCCCC-CCCCCCCTTAT-GAG--CTGCGAT-GCTCCAA-TGTCAGC--ATTTTTATGTTGTAAAATTGTTA-AAAAAAAT--CTTTATT-TTT--TATTTGTt
gi|12 : ATTTGTG--CACTT--CCACAGTTATACA-TAA-GGTTGGACAACCCCACCCCTGG-AAAAATTTTCTGGATCCGTGCC
gi|2 : TTTTACT-TAA-GGTTGGAACGCCGCCCCCTTGGGAAAAAGTTTCTGGATCCGCGCt
gi|11 : ggcgcggatctagaggggtggggtgggcatgggggtgggtctgcccccccccccccccccccttgcgaatattgcaaacgcttaatatctcgatattactgaaactgaaaaaatctttgttatttcacatttgtgcccactttcccacagttatacgtcaaacagaaatcatccacaaaatagacataataaataactggtgtgtgttgatgggtttTACT-TAA-GGTTGGA---CCCCCCCCCTGG-ATAAA-TTTCTGG
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): AGGGTTCGACACTAACGCTAGTCCGGTAGCCGAGGCTAGTAATTTGGTCCCGGACTACCAAAATATCATATCTATAAGTAGTCCCGGGCGATGCTACTGAATTAATTCAAACCCTATATATGATGCCTGATGAAAATGATGATAAACTTATCAATATGAAGATAGTCAGGAACTTTTCAAATGTTTTTGGACTTGATGTAAAAACCCAGTGTCTAAAATTGAAATGTAAAATCTTGTTCATGTTCCAACATTGATAATTAGGGAGAATCAGTAAAAAAAGAGGCTAAATTTGTCACAAAATTTTCATTTATTTGTCTCAAAATTTACTGCGAAATGCACGATTTTGCATCCAGATTTTGAAAATATTTCCCGGCGGGAGACCCGGCCCCACCAGCAAGGAGGGGCAAGCCCTCCCTACCACAGTTGCCGACTGGTCGAGTGGCAGCCCCCTCCCCTACCCCGCCCCCTT
Unaligned ( gi|3 ): GGGTTCGACACTAACGCTAGTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGAACTTTTTATATATGTTTGGACTTGATGTAAAAACCCAGTGTT
Unaligned ( gi|7 ): ATGTTCCAACAGTTGATATTATGGGATAATCCGTAAAATATGAGCTTAATTTGGTCACAAAATTTTCATTTATTNNNNNNNNNNNNNNNNNNNNNNNNNATGGCATCGCATCCAACACTAAATACTTGC
Unaligned ( gi|9 ): GTTCAAGACTAACACTAGTCCAGTAGCCTGAGACTAGTAAACTTTGCCCAGGACTATCAGAATGTCAGTTGCGAGTAGTTTGGCAGACTACAGAAAAT
Unaligned ( gi|13 ): ATTTGTCTCAAAATTTACTGGAAATACACAGTTTTGCATCCAGATTTTGTAAATTTT
Unaligned ( gi|14 ): TGCATCCAGGTTTTAAAAATGGACCCCCACCAGCAGGAGGGGGCAAGCCC
Unaligned ( gi|15 ): AGGGTTCCACACTAACACTAGTCCTGTAGTGAGAGATTAGTAAA
Unaligned ( gi|16 ): AGGGTTTGACACGAACGATAGTTCGGTAGCCTGAGGCTAGC
Unaligned ( gi|17 ): GTCAGGGTTCGACACTAACGCTAGTCCGGT
Unaligned ( gi|18 ): CAGGGTTCGACACTAACGCTAGTCCG
Unaligned ( gi|19 ): AGGGTTCGACACTAACGCTAGTCCGG
Alignments
lowQualScore : 333333333333 1 111 1111 111 1 111111111 11 333333 1
lowQualScore : 5 555555555555 6 8 3 000 2 1 0000 6 6 2 111 44 99 1 99 888888888 99 6 2 99 11 6 2 333333 6 3 3 55
lowQualScore : . ............ . . . ... . . .... . . . ... .. .. . .. ......... .. . . .. .. . . ...... . . . ..
lowQualScore : 0 000000000000 0 0 8 222 5 0 0000 7 7 5 222 77 22 7 22 888888888 22 7 5 22 00 7 5 333333 7 3 2 88
consensus : TGCGCGGATCTAGAAGGG-------GG---GGGGGTGGG-TCCGNACCCC--CCCCCCCCCCCCCCT--G-GAAT-TTGCAAA-GCT-T-AATATCGNC--GATATTA--CTGGAAA-----T-G-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGGA---C--CCCC-CCCCTGG-AAAAATTTTCTGGATCCGCGCC
Reference ( family-5338 ) : TGCGCGGATCTAGAAGGG-------GG---GGGGG-GGG-TCCGNACCCC--CCCCCCCCCCCCCCT--G-GAAT-TTGCAAA-GCT-T-AATATCGNC--GATATTA--CTGGAAA-----T-G-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGGA---C--CCCC-CCCCTGG-AAAAATTTTCTGGATCCGCGCC
gi|10 : CCCC--CCCCCCCCCCCCCCTTAT-GAG--CTGCGAT-GCTCC-AATGTCAGC--ATTTTTATGTTGTAAAATTGTT-A-AAAAAAAT--CTTTATT-TTT--TATTTGT
gi|11 : TACT-TAAGGTTGGA---C--CCCC-CCCCTGG-ATAAA-TTTCTGG
gi|12 : tgtgtgttgtaatggttttgtctATTTGTG--CACTT--CCACAGTTATACA-TAAGGTTGGA---CAACCCCACCCCTGG-AAAAATTTTCTGGATCCGTGCCgagggtcggcctggaacgtgtaatg
gi|2 : GCGCGGATCTAGAGGGGTGGGGTGGGCATGGGGGTGGG-TCTGCCCCCCCC--CCCCCCCCCCCTT--GCGAATATTGCAAACGCT-T-AATATC-TC--GATATTA--CTGAAAC-----T-G--AAAAAAT--CTTTGTTATTTCACATTTGTGCCCACTTTCCCACAGTTATACt
gi|2 : gTTTTACT-TAAGGTTGGAACGC--CGCC-CCCTTGGGAAAAAGTTTCTGGATCCGCGCgtcaaacagaaatcatccacaaaatagacataataaataactggtgtgtgttgatgggtttttttacttaaggttggaacgccgcccccttgggaaaaagtttctggatccgcgc
gi|4 : ggcgcggatctagaggggtggggtgggcatgggggtgggtctgcccccccccccccccccccttgcgaatattgcaaacgcttaatatctcgatattactgaaactgaaaaaatctttgttatttcacatttgtgcccactttcccacagttatacgtcaaacagaaatcatccacaaaatagacataataaataactggtgtgtgttgatgggtttTGCGCGGATCTAGAAGGG-------GT---GGGGGTGGG-TCCGGACCCC--CCCCCCCCCCCCCCT--G-GAAT-TTGCAAA-GCT-T-AATATCGCC--GATATTA--CTGGAAA-----T-G-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGAACCCC--CCCC-CCCCTGG-AAAAATTTTCTGGATCCGCGCC
gi|5 : TGCGCGGATCTATAAGGG-------GG---GGGGG-GGGGTCCGTACCCC--CCCCCCCC------T--G-GAAT-TTGCAAA-A-T-T-AATATCGCC--GATATTA--CTGGAAA-----T-G-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAA-GTTGGA---CA-CCCC-CCCCTGGAAAAAATGTTCTGGA--CGCGC
gi|6 : aGCGAATCTA-AAGGG-------GG---GGGGG-GGG-TCCGGA-------------CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAAATATCGGC--GAT-TTA--CTGGAAA-----TGG-AAAAAAATTAAGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACTGTAATGGTGGA---A--CCCC-GCCCTGG-AAAAATTTTCTGGAT--GCGCC
gi|8 : gTGCGCGGATCTAGAAG-----------------------------ACCCC--TCCTCCTCCTC------G-GAAT-GTGAAAA-GGT-A-CATATCATCATGAT-TTA--T--GACC-----C-ACAAAAAAAG--AGTTATT-----ACATTTGTG--CAt
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AGGGTTCGACACTAACGCTAGTCCGGTAGCCGAGGCTAGTAATTTGGTCCCGGACTACCAAAATATCATATCTATAAGTAGTCCCGGGCGATGCTACTGAATTAATTCAAACCCTATATATGATGCCTGATGAAAATGATGATAAACTTATCAATATGAAGATAGTCAGGAACTTTTCAAATGTTTTTGGACTTGATGTAAAAACCCAGTGTCTAAAATTGAAATGTAAAATCTTGTTCATGTTCCAACATTGATAATTAGGGAGAATCAGTAAAAAAAGAGGCTAAATTTGTCACAAAATTTTCATTTATTTGTCTCAAAATTTACTGCGAAATGCACGATTTTGCATCCAGATTTTGAAAATATTTCCCGGCGGGAGACCCGGCCCCACCAGCAAGGAGGGGCAAGCCCTCCCTACCACAGTTGCCGACTGGTCGAGTGGCAGCCCCCTCCCCTACCCCGCCCCCTT
Unaligned ( gi|3 ): GGGTTCGACACTAACGCTAGTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGAACTTTTTATATATGTTTGGACTTGATGTAAAAACCCAGTGTT
Unaligned ( gi|7 ): ATGTTCCAACAGTTGATATTATGGGATAATCCGTAAAATATGAGCTTAATTTGGTCACAAAATTTTCATTTATTNNNNNNNNNNNNNNNNNNNNNNNNNATGGCATCGCATCCAACACTAAATACTTGC
Unaligned ( gi|9 ): GTTCAAGACTAACACTAGTCCAGTAGCCTGAGACTAGTAAACTTTGCCCAGGACTATCAGAATGTCAGTTGCGAGTAGTTTGGCAGACTACAGAAAAT
Unaligned ( gi|13 ): ATTTGTCTCAAAATTTACTGGAAATACACAGTTTTGCATCCAGATTTTGTAAATTTT
Unaligned ( gi|14 ): TGCATCCAGGTTTTAAAAATGGACCCCCACCAGCAGGAGGGGGCAAGCCC
Unaligned ( gi|15 ): AGGGTTCCACACTAACACTAGTCCTGTAGTGAGAGATTAGTAAA
Unaligned ( gi|16 ): AGGGTTTGACACGAACGATAGTTCGGTAGCCTGAGGCTAGC
Unaligned ( gi|17 ): GTCAGGGTTCGACACTAACGCTAGTCCGGT
Unaligned ( gi|18 ): CAGGGTTCGACACTAACGCTAGTCCG
Unaligned ( gi|19 ): AGGGTTCGACACTAACGCTAGTCCGG
Alignments
lowQualScore : 333333333333 1 1111 1 11111111 11 333333 1
lowQualScore : 5 555555555555 0 3 1 55555 2 1 0000 6 6 2 6 6 44 99 1 99 88888888 99 6 2 99 11 6 2 333333 6 3 3 55
lowQualScore : . ............ . . . ..... . . .... . . . . . .. .. . .. ........ .. . . .. .. . . ...... . . . ..
lowQualScore : 0 000000000000 4 8 0 33333 5 0 0000 7 7 5 7 7 77 22 7 22 88888888 22 7 5 22 00 7 5 333333 7 3 2 88
consensus : TGCGCGGATCTAGAAGGG-------GG---GGGGGTGGGTCCGNACCCCCCCCCCC-CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAA-TATCGNC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGGA---C--CCCC-CCCCTGG-AAAAATTTTCTGGATCCGCGCC
Reference ( family-5338 ) : TGCGCGGATCTAGAAGGG-------GG---GGGGGTGGGTCCGNACCCCCCCCCCC-CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAA-TATCGNC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGGA---C--CCCC-CCCCTGG-AAAAATTTTCTGGATCCGCGCC
gi|10 : CCCCCCCCCCC-CCCCCCCTTAT-GAG--CTGCGAT-GCTCCAA-TGTCAGC--ATTTTTATGTTGTAAAATTGTTA-AAAAAAAT--CTTTATT-TTT--TATTTGT
gi|11 : TACT-TAAGGTTGGA---C--CCCC-CCCCTGG-ATAAA-TTTCTGG
gi|12 : tgtgtgttgtaatggttttgtctATTTGTG--CACTT--CCACAGTTATACA-TAAGGTTGGA---CAACCCCACCCCTGG-AAAAATTTTCTGGATCCGTGCCgagggtcggcctggaacgtgtaatg
gi|2 : GCGCGGATCTAGAGGGGTGGGGTGGGCATGGGGGTGGGTCTGCCCCCCCCCCCCC-CCCCCCTT--GCGAATATTGCAAACGCT-TAA-TATC-TC--GATATTA--CTGAAAC-----TG--AAAAAAT--CTTTGTTATTTCACATTTGTGCCCACTTTCCCACAGTTATACt
gi|2 : gTTTTACT-TAAGGTTGGAACGC--CGCC-CCCTTGGGAAAAAGTTTCTGGATCCGCGCgtcaaacagaaatcatccacaaaatagacataataaataactggtgtgtgttgatgggtttttttacttaaggttggaacgccgcccccttgggaaaaagtttctggatccgcgc
gi|4 : ggcgcggatctagaggggtggggtgggcatgggggtgggtctgcccccccccccccccccccttgcgaatattgcaaacgcttaatatctcgatattactgaaactgaaaaaatctttgttatttcacatttgtgcccactttcccacagttatacgtcaaacagaaatcatccacaaaatagacataataaataactggtgtgtgttgatgggtttTGCGCGGATCTAGAAGGG-------GT---GGGGGTGGGTCCGGACCCCCCCCCCC-CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAA-TATCGCC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGAACCCC--CCCC-CCCCTGG-AAAAATTTTCTGGATCCGCGCC
gi|5 : TGCGCGGATCTATAAGGG-------GG---GGGGGGGGGTCCGTACCCC-------CCCCCCCCT--G-GAAT-TTGCAAA-A-T-TAA-TATCGCC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAA-GTTGGA---CA-CCCC-CCCCTGGAAAAAATGTTCTGGA--CGCGC
gi|6 : aGCGAATCTA-AAGGG-------GG---GGGGG-GGGTCCGGACCCCCCC------------T--G-GAAT-TTGCAAA-GCT-TAAATATCGGC--GAT-TTA--CTGGAAA-----TGGAAAAAAATTAAGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACTGTAATGGTGGA---A--CCCC-GCCCTGG-AAAAATTTTCTGGAT--GCGCC
gi|8 : gTGCGCGGATCTAGAAG----------------------------ACCCCTCCTCCT-CCTC------G-GAAT-GTGAAAA-GGT-ACA-TATCATCATGAT-TTA--T--GACC-----CACAAAAAAAG--AGTTATT-----ACATTTGTG--CAt
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AGGGTTCGACACTAACGCTAGTCCGGTAGCCGAGGCTAGTAATTTGGTCCCGGACTACCAAAATATCATATCTATAAGTAGTCCCGGGCGATGCTACTGAATTAATTCAAACCCTATATATGATGCCTGATGAAAATGATGATAAACTTATCAATATGAAGATAGTCAGGAACTTTTCAAATGTTTTTGGACTTGATGTAAAAACCCAGTGTCTAAAATTGAAATGTAAAATCTTGTTCATGTTCCAACATTGATAATTAGGGAGAATCAGTAAAAAAAGAGGCTAAATTTGTCACAAAATTTTCATTTATTTGTCTCAAAATTTACTGCGAAATGCACGATTTTGCATCCAGATTTTGAAAATATTTCCCGGCGGGAGACCCGGCCCCACCAGCAAGGAGGGGCAAGCCCTCCCTACCACAGTTGCCGACTGGTCGAGTGGCAGCCCCCTCCCCTACCCCGCCCCCTT
Unaligned ( gi|3 ): GGGTTCGACACTAACGCTAGTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGAACTTTTTATATATGTTTGGACTTGATGTAAAAACCCAGTGTT
Unaligned ( gi|7 ): ATGTTCCAACAGTTGATATTATGGGATAATCCGTAAAATATGAGCTTAATTTGGTCACAAAATTTTCATTTATTNNNNNNNNNNNNNNNNNNNNNNNNNATGGCATCGCATCCAACACTAAATACTTGC
Unaligned ( gi|9 ): GTTCAAGACTAACACTAGTCCAGTAGCCTGAGACTAGTAAACTTTGCCCAGGACTATCAGAATGTCAGTTGCGAGTAGTTTGGCAGACTACAGAAAAT
Unaligned ( gi|13 ): ATTTGTCTCAAAATTTACTGGAAATACACAGTTTTGCATCCAGATTTTGTAAATTTT
Unaligned ( gi|14 ): TGCATCCAGGTTTTAAAAATGGACCCCCACCAGCAGGAGGGGGCAAGCCC
Unaligned ( gi|15 ): AGGGTTCCACACTAACACTAGTCCTGTAGTGAGAGATTAGTAAA
Unaligned ( gi|16 ): AGGGTTTGACACGAACGATAGTTCGGTAGCCTGAGGCTAGC
Unaligned ( gi|17 ): GTCAGGGTTCGACACTAACGCTAGTCCGGT
Unaligned ( gi|18 ): CAGGGTTCGACACTAACGCTAGTCCG
Unaligned ( gi|19 ): AGGGTTCGACACTAACGCTAGTCCGG
Alignments
lowQualScore : 333333333333 1 1111 1 11111111 11 333333 1
lowQualScore : 5 555555555555 0 3 1 55555 2 1 0000 6 6 2 6 6 44 99 1 99 88888888 99 6 2 99 11 6 2 333333 6 3 3 55
lowQualScore : . ............ . . . ..... . . .... . . . . . .. .. . .. ........ .. . . .. .. . . ...... . . . ..
lowQualScore : 0 000000000000 4 8 0 33333 5 0 0000 7 7 5 7 7 77 22 7 22 88888888 22 7 5 22 00 7 5 333333 7 3 2 88
consensus : TGCGCGGATCTAGAAGGG-------GG---GGGGGTGGGTCCGNACCCCCCCCCCC-CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAA-TATCGNC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGGA---C--CCCC-CCCCTGG-AAAAATTTTCTGGATCCGCGCC
Reference ( family-5338 ) : TGCGCGGATCTAGAAGGG-------GG---GGGGGTGGGTCCGNACCCCCCCCCCC-CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAA-TATCGNC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGGA---C--CCCC-CCCCTGG-AAAAATTTTCTGGATCCGCGCC
gi|10 : CCCCCCCCCCC-CCCCCCCTTAT-GAG--CTGCGAT-GCTCCAA-TGTCAGC--ATTTTTATGTTGTAAAATTGTTA-AAAAAAAT--CTTTATT-TTT--TATTTGT
gi|11 : TACT-TAAGGTTGGA---C--CCCC-CCCCTGG-ATAAA-TTTCTGG
gi|12 : tgtgtgttgtaatggttttgtctATTTGTG--CACTT--CCACAGTTATACA-TAAGGTTGGA---CAACCCCACCCCTGG-AAAAATTTTCTGGATCCGTGCCgagggtcggcctggaacgtgtaatg
gi|2 : GCGCGGATCTAGAGGGGTGGGGTGGGCATGGGGGTGGGTCTGCCCCCCCCCCCCC-CCCCCCTT--GCGAATATTGCAAACGCT-TAA-TATC-TC--GATATTA--CTGAAAC-----TG--AAAAAAT--CTTTGTTATTTCACATTTGTGCCCACTTTCCCACAGTTATACt
gi|2 : gTTTTACT-TAAGGTTGGAACGC--CGCC-CCCTTGGGAAAAAGTTTCTGGATCCGCGCgtcaaacagaaatcatccacaaaatagacataataaataactggtgtgtgttgatgggtttttttacttaaggttggaacgccgcccccttgggaaaaagtttctggatccgcgc
gi|4 : ggcgcggatctagaggggtggggtgggcatgggggtgggtctgcccccccccccccccccccttgcgaatattgcaaacgcttaatatctcgatattactgaaactgaaaaaatctttgttatttcacatttgtgcccactttcccacagttatacgtcaaacagaaatcatccacaaaatagacataataaataactggtgtgtgttgatgggtttTGCGCGGATCTAGAAGGG-------GT---GGGGGTGGGTCCGGACCCCCCCCCCC-CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAA-TATCGCC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGAACCCC--CCCC-CCCCTGG-AAAAATTTTCTGGATCCGCGCC
gi|5 : TGCGCGGATCTATAAGGG-------GG---GGGGGGGGGTCCGTACCCC-------CCCCCCCCT--G-GAAT-TTGCAAA-A-T-TAA-TATCGCC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAA-GTTGGA---CA-CCCC-CCCCTGGAAAAAATGTTCTGGA--CGCGC
gi|6 : aGCGAATCTA-AAGGG-------GG---GGGGG-GGGTCCGGACCCCCCC------------T--G-GAAT-TTGCAAA-GCT-TAAATATCGGC--GAT-TTA--CTGGAAA-----TGGAAAAAAATTAAGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACTGTAATGGTGGA---A--CCCC-GCCCTGG-AAAAATTTTCTGGAT--GCGCC
gi|8 : gTGCGCGGATCTAGAAG----------------------------ACCCCTCCTCCT-CCTC------G-GAAT-GTGAAAA-GGT-ACA-TATCATCATGAT-TTA--T--GACC-----CACAAAAAAAG--AGTTATT-----ACATTTGTG--CAt
blockSeqs : G GT T G C CCCC C T GC A C C . A GC AT A . TGG TA A C CC TC G G ACGC A G T TC
blockSeqs : T GG G T C CCCC C C G . . C . . GC . A . CAC . . C . . . G CCCC . A G TC
blockSeqs : G GG . G C TCCT C C G . . C . . GG . A . TG . . C . . . G CAA . . T T
blockSeqs : . . . . T C . . G . . G . . AT . . . TG . . C . . . T CA . . T .
blockSeqs : . . . . G . . . . . T . . . TG . . . . . . A . . T
blockSeqCons : GG********** G*** ** TG****** CA****
originalCons : TGCGCGGATCTAGAAGGG-------GG---GGGGGTGGGTCCGNACCCCCCCCCCC-CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAA-TATCGNC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGGA---C--CCCC-CCCCTGG-AAAAATTTTCTGGATCCGCGCC
finalCons : TGCGCGGATCTAGAAGGGGG----------GGGGGTGGGTCCGNACCCCCCCCCCC-CCCCCCCTG---GAAT-TTGCAAA-GCT-TAA-TATCGNC--GATATTA--CTGGAAATG------AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGGACA----CCCC-CCCCTGG-AAAAATTTTCTGGATCCGCGCC
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AGGGTTCGACACTAACGCTAGTCCGGTAGCCGAGGCTAGTAATTTGGTCCCGGACTACCAAAATATCATATCTATAAGTAGTCCCGGGCGATGCTACTGAATTAATTCAAACCCTATATATGATGCCTGATGAAAATGATGATAAACTTATCAATATGAAGATAGTCAGGAACTTTTCAAATGTTTTTGGACTTGATGTAAAAACCCAGTGTCTAAAATTGAAATGTAAAATCTTGTTCATGTTCCAACATTGATAATTAGGGAGAATCAGTAAAAAAAGAGGCTAAATTTGTCACAAAATTTTCATTTATTTGTCTCAAAATTTACTGCGAAATGCACGATTTTGCATCCAGATTTTGAAAATATTTCCCGGCGGGAGACCCGGCCCCACCAGCAAGGAGGGGCAAGCCCTCCCTACCACAGTTGCCGACTGGTCGAGTGGCAGCCCCCTCCCCTACCCCGCCCCCTT
Unaligned ( gi|3 ): GGGTTCGACACTAACGCTAGTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGAACTTTTTATATATGTTTGGACTTGATGTAAAAACCCAGTGTT
Unaligned ( gi|7 ): ATGTTCCAACAGTTGATATTATGGGATAATCCGTAAAATATGAGCTTAATTTGGTCACAAAATTTTCATTTATTNNNNNNNNNNNNNNNNNNNNNNNNNATGGCATCGCATCCAACACTAAATACTTGC
Unaligned ( gi|9 ): GTTCAAGACTAACACTAGTCCAGTAGCCTGAGACTAGTAAACTTTGCCCAGGACTATCAGAATGTCAGTTGCGAGTAGTTTGGCAGACTACAGAAAAT
Unaligned ( gi|13 ): ATTTGTCTCAAAATTTACTGGAAATACACAGTTTTGCATCCAGATTTTGTAAATTTT
Unaligned ( gi|14 ): TGCATCCAGGTTTTAAAAATGGACCCCCACCAGCAGGAGGGGGCAAGCCC
Unaligned ( gi|15 ): AGGGTTCCACACTAACACTAGTCCTGTAGTGAGAGATTAGTAAA
Unaligned ( gi|16 ): AGGGTTTGACACGAACGATAGTTCGGTAGCCTGAGGCTAGC
Unaligned ( gi|17 ): GTCAGGGTTCGACACTAACGCTAGTCCGGT
Unaligned ( gi|18 ): CAGGGTTCGACACTAACGCTAGTCCG
Unaligned ( gi|19 ): AGGGTTCGACACTAACGCTAGTCCGG
Alignments
lowQualScore : 333333333333 1 1111 1 11111111 11 22222
lowQualScore : 5 555555555555 0 3 1 55555 2 1 0000 6 6 2 6 6 44 99 1 99 88888888 99 6 2 99 11 6 2 66666 6 99 6 3 55
lowQualScore : . ............ . . . ..... . . .... . . . . . .. .. . .. ........ .. . . .. .. . . ..... . .. . . ..
lowQualScore : 0 000000000000 4 8 0 33333 5 0 0000 7 7 5 7 7 77 22 7 22 88888888 22 7 5 22 00 7 5 55555 7 22 7 2 88
consensus : TGCGCGGATCTAGAAGGG-------GG---GGGGGTGGGTCCGNACCCCCCCCCCC-CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAA-TATCGNC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGGA--C-ACCCC-CCCCT--GG-AAAAATTTTCTGGATCCGCGCC
Reference ( family-5338 ) : TGCGCGGATCTAGAAGGG-------GG---GGGGGTGGGTCCGNACCCCCCCCCCC-CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAA-TATCGNC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGGA--C-ACCCC-CCCCT--GG-AAAAATTTTCTGGATCCGCGCC
gi|10 : CCCCCCCCCCC-CCCCCCCTTAT-GAG--CTGCGAT-GCTCCAA-TGTCAGC--ATTTTTATGTTGTAAAATTGTTA-AAAAAAAT--CTTTATT-TTT--TATTTGT
gi|11 : TACT-TAAGGTTGGA--C--CCCC-CCCCT--GG-ATAAA-TTTCTGG
gi|12 : tgtgtgttgtaatggttttgtctATTTGTG--CACTT--CCACAGTTATACA-TAAGGTTGGA--CAACCCCACCCCT--GG-AAAAATTTTCTGGATCCGTGCCgagggtcggcctggaacgtgtaatg
gi|2 : GCGCGGATCTAGAGGGGTGGGGTGGGCATGGGGGTGGGTCTGCCCCCCCCCCCCC-CCCCCCTT--GCGAATATTGCAAACGCT-TAA-TATC-TC--GATATTA--CTGAAAC-----TG--AAAAAAT--CTTTGTTATTTCACATTTGTGCCCACTTTCCCACAGTTATACt
gi|2 : gTTTTACT-TAAGGTTGGAA-C-GCCGC-CCCCTTGGG-AAAAAGTTTCTGGATCCGCGCgtcaaacagaaatcatccacaaaatagacataataaataactggtgtgtgttgatgggtttttttacttaaggttggaacgccgcccccttgggaaaaagtttctggatccgcgc
gi|4 : ggcgcggatctagaggggtggggtgggcatgggggtgggtctgcccccccccccccccccccttgcgaatattgcaaacgcttaatatctcgatattactgaaactgaaaaaatctttgttatttcacatttgtgcccactttcccacagttatacgtcaaacagaaatcatccacaaaatagacataataaataactggtgtgtgttgatgggtttTGCGCGGATCTAGAAGGG-------GT---GGGGGTGGGTCCGGACCCCCCCCCCC-CCCCCCCT--G-GAAT-TTGCAAA-GCT-TAA-TATCGCC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAAGGTTGAACCC-CCCCC-CCCCT--GG-AAAAATTTTCTGGATCCGCGCC
gi|5 : TGCGCGGATCTATAAGGG-------GG---GGGGGGGGGTCCGTACCCC-------CCCCCCCCT--G-GAAT-TTGCAAA-A-T-TAA-TATCGCC--GATATTA--CTGGAAA-----TG-AAAAAAAT--AGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACT-TAA-GTTGGA--C-ACCCC-CCCCT--GGAAAAAATGTTCTGGA--CGCGC
gi|6 : aGCGAATCTA-AAGGG-------GG---GGGGG-GGGTCCGGACCCCCCC------------T--G-GAAT-TTGCAAA-GCT-TAAATATCGGC--GAT-TTA--CTGGAAA-----TGGAAAAAAATTAAGTTATT-TTTCATATTTGTG--CACTT--CCACAGTTATACTGTAATGGTGGA----ACCCC-GCCCT--GG-AAAAATTTTCTGGAT--GCGCC
gi|8 : gTGCGCGGATCTAGAAG----------------------------ACCCCTCCTCCT-CCTC------G-GAAT-GTGAAAA-GGT-ACA-TATCATCATGAT-TTA--T--GACC-----CACAAAAAAAG--AGTTATT-----ACATTTGTG--CAt
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AGGGTTCGACACTAACGCTAGTCCGGTAGCCGAGGCTAGTAATTTGGTCCCGGACTACCAAAATATCATATCTATAAGTAGTCCCGGGCGATGCTACTGAATTAATTCAAACCCTATATATGATGCCTGATGAAAATGATGATAAACTTATCAATATGAAGATAGTCAGGAACTTTTCAAATGTTTTTGGACTTGATGTAAAAACCCAGTGTCTAAAATTGAAATGTAAAATCTTGTTCATGTTCCAACATTGATAATTAGGGAGAATCAGTAAAAAAAGAGGCTAAATTTGTCACAAAATTTTCATTTATTTGTCTCAAAATTTACTGCGAAATGCACGATTTTGCATCCAGATTTTGAAAATATTTCCCGGCGGGAGACCCGGCCCCACCAGCAAGGAGGGGCAAGCCCTCCCTACCACAGTTGCCGACTGGTCGAGTGGCAGCCCCCTCCCCTACCCCGCCCCCTT
Unaligned ( gi|3 ): GGGTTCGACACTAACGCTAGTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGAACTTTTTATATATGTTTGGACTTGATGTAAAAACCCAGTGTT
Unaligned ( gi|7 ): ATGTTCCAACAGTTGATATTATGGGATAATCCGTAAAATATGAGCTTAATTTGGTCACAAAATTTTCATTTATTNNNNNNNNNNNNNNNNNNNNNNNNNATGGCATCGCATCCAACACTAAATACTTGC
Unaligned ( gi|9 ): GTTCAAGACTAACACTAGTCCAGTAGCCTGAGACTAGTAAACTTTGCCCAGGACTATCAGAATGTCAGTTGCGAGTAGTTTGGCAGACTACAGAAAAT
Unaligned ( gi|13 ): ATTTGTCTCAAAATTTACTGGAAATACACAGTTTTGCATCCAGATTTTGTAAATTTT
Unaligned ( gi|14 ): TGCATCCAGGTTTTAAAAATGGACCCCCACCAGCAGGAGGGGGCAAGCCC
Unaligned ( gi|15 ): AGGGTTCCACACTAACACTAGTCCTGTAGTGAGAGATTAGTAAA
Unaligned ( gi|16 ): AGGGTTTGACACGAACGATAGTTCGGTAGCCTGAGGCTAGC
Unaligned ( gi|17 ): GTCAGGGTTCGACACTAACGCTAGTCCGGT
Unaligned ( gi|18 ): CAGGGTTCGACACTAACGCTAGTCCG
Unaligned ( gi|19 ): AGGGTTCGACACTAACGCTAGTCCGG