lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 9999999999999999999999999999999999 1 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22 1111111 22 11111 222222 1 1 4444444444444 11111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 55555555555555555 222 11 22222 11 1111111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 222 11
lowQualScore : 6 3 0000000000000000000000000000000000 1 555 3 77 6 7 6 6 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8 8 00 2222222 3 88 0 33 0 55555 1 111111 5 66 0 5 2 8 7 2 1 5555555555555 1 6 55555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 22222222222222222 66 1 99 000 11 5 44444 1 11 9999999 3 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 6 111 6 22
lowQualScore : . . .................................. . ... . .. . . . . ................................................................................................................................................................................................................ . . .. ....... . .. . .. . ..... . ...... . .. . . . . . . . ............. . . ..... ................................................................................... . ................. .. . .. ... .. . ..... . .. ....... . ....................................................................................... . . ... . ..
lowQualScore : 0 0 8888888888888888888888888888888888 8 222 2 55 0 0 0 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 88 0000000 8 88 8 88 8 88888 7 000000 7 44 7 7 0 0 0 0 2 0000000000000 2 5 77777 44444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 22222222222222222 55 0 22 000 22 0 22222 0 00 8888888 2 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 000 0 00
consensus : TTAACCCGTGCATGCACCNGTGGGTATAAGATAATTA------TATAGTGAATCTGNAAATAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAAATAGAGAGTACGTATTATAT---CAC--G---TTGTATCATTAATTACATGGGGATTTGTCG--TG----------------AA--GT-------AAATT-TGAT----GT-CTCC-ATAAA-TTGA-AT-TTTATTAAGNT---ATNCTTTGA-----TAT----TAAGACCTATCTTCAAAT-TATCAAA-CAATCAAC-GTATCCCTNA-ACGAA-AT-AAAGA--T-A--GGTTAAATTCGATAAATAAATA-ATATATAT--TGATTCAATTCAATTA-----GAA-ATA-GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATCTGACC----CTTTA-CC-AATTGGTTTANATATACANT-ATAANNT---NAC-A---TACATGTATNA----TGAGA-----ATATCG---AGT-TCAGA-AATATT---------GT-----TT-GAACTTATTTTTG-NTTAA----------TTAGACCCA--TCTT--CAAATAATTGGACG-NAACTATA--TAAATAA--TTAN--A--GATAAATT-TG-TGAA-A-------------AGATAG-NTTCAATTGTA-ATACATGATATGCAATCGCAAGTNGNNTCAATTTGATT---TACACANGTAGTGTGACGTGAATTAAGTAT
Reference ( gi|1 ) : TCAACCCGTACATG----GGTGGATATAAAATAATTACGTG--TATAGTGAATTTGGACGTAAAAATCACACAGTGGGGTTTTGAAGCCTTCGTTGAATGAAGATA-----TATTTATTATATAAATACCAGTATTTTTATCA--AATC-CATGGGAATTTCTTG--TG----------------AA--AT-------AAATT-TGAT----GT-TTCC-ATAGATTTGAAAT-TTTATTTAGCT---ATCCTTTGA-----TAT----CAAGTCCTATCTTTTAAT-TATCAAA-TACTCAGT-ATATCCCTCA-ACGAA-AT-GAAGA--T-A--GGTTAAATTCAATAAATAAATAGATATATAT--TGCTTCAATTCAATTA-----AAA-ATA-GGTCAA-ATTCCTTTTTGAAATAGACCCATC-TTTAAAAGAATTCGACC----CCTTATCG-AATTGATTTAGATATACACT-ATAATGT---CAC-A---TACATGTATA-----TGAGA-----ATATTG---AGT-TTAGA-AATGTT---------GT-----TT-GAACTTATCTTTG-CTTAA----------TTAAACCCA--TCTG--CAAATAATTGGACA-CAACTATA--TAAGTAA--TTGT--A--GATAAATTGTGTT----------------C-AGATAG-CTTCAATTATACATACATG-TATGTAATCTCAAGTAGTATCAATTTAAGTACATATACATATAGTATCAAGTGAACTAGATATGCCCAATTCCATTTCAGGTTTTTTTTAATCAGGCCCATAAT
gi|9 : TTAACCCGTGTATG----CACGGGTATA---TAATT------------TGAATTTGAAAGTAAAAATCATACATTGGAGGTTTGAAGCCTT
gi|15 : cttcatttcataaatgactaaacaTTAACCCGTACACA----CATCGATATATGATA--CATGTAATTATAGTGAGTGTGGAAGTAAAAATCTGAC-GTGGAGTaaaaggcagagagtaccagtatattacactgtgtgatacatgtatgttgcttgt
gi|17 : aTTAACCCATGCATGCACCAGTGGGTA--AGATAATTA------TAT--TAAATCTATGCATAAAAATCAGACA
gi|16 : aTTAACCCATGCATGCACCAGTGGGTA--AGATAATTA------TAT--TAAATCTATGCATAAAAATCAGACAtc
gi|2 : aCATGCATG----GGTAAATGTAGGGTGATTA------TATAGAGAATTTGGAAATAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAAATAGAGAGTACGTATTATAT---CAC--G---TTGTATCATTAATTACATGAAGGTTTGTTG--TGATTGTTTTTTATTTGAAA--ATGA-----AAATT-AGATCGAAATAATGC-ATAAATTTTATGTCTTCATATAAGTGAAATAATTTGAAATTTTAT----CAAG--CTATCCTC-------TCAAATTAGTGAAC-GTATCCCCGA-GCGAATAT--AAGA--T-A--GGGT-AATTTGATAAATGA----ATATAAAT--TGATTCTATTCAATTC-----CAA-ATA-TGTCAG-ATTTCGTATTGAAATAGGGCCATA-TTTAATCGAATCTGACCAAATCTTT-----AGTTGATTTAGAGTTATACTAATGATTTGAAGAC-AGAGTAAA-ATATT-----TGATA-----ATTTCA---AGT-TTAGA-AAT-----------------------AATTTATGGTTT-TTTAAAAAAACATATTTGAACTTAGTTTTGATTAAATAATTGAATG-CAAGTACA--TATATAATTTTGTTCA--AACAA--------------------------AGATAGTTTTTAATTGT------ATGATAT-CAATTGCAAGTTGGCTCAAT-------------CAAATAGTGTGACGTGAATTAAGTATtc
gi|7 : ttagcccatgATGGGGATTTGTCG--TG----------------A----TTCGTTTGAAATTGTGAT----GT-CTCCCATA----TG------TTATTATGCT---GTCCTT-GA-----TACATTATAAGACCTATATATAAAGATATCAAA-CAACCA---------CACA-ACGAA-ATTAAAGA--TCACCGGTTAAATTCAATA---AAATAAATA----------TTCAA------TA-----GAA-ATA-GGTAAA-ATa
gi|3 : AAGTTGTTGATTG----------------AATAGT-------AAATG-TGAT----GT-CTCC-ATTAAATTGAAAT-GGTAT--AGAT---ATCCTTTGA-----TAT----TAAGACCCATCTTCAAAT-CATCAAA-C-----GT-GT---CCTTATACGAA-AT-AAAAACAT-A--TGTTAAATTCACTAAATAAATATATATATACAATGATTCAGCTGAATTA-----TAT-ATA---T--A-ATTCAATTTTAAAATCGGTCCATC-TGTAATAGAATTCGACT----CTCTATTC-AATTGGTCTATATAGACATG-ATAAATT---GAGGA---TA-ATGCAAAACATTTGGGT-----ATCCTT---AGT-TAAGA-AATATTTTATGTTTTGTAATTCTT-GCACTTATTTTTGACTTA-----------TTCGACCAA--TCTT--CAAATGATTGGACT-TAACTAT------GTAA--TTAC--A--GATAAATTGTGTTGAATA-----------CAAGATAG-CT
gi|13 : cgtatttatagtgtagaaagtgcattatgaattacatgtacatgtggttttttgtgatAT-TTTATTAAGCT---ATATTTTAA-----TGT----TCGGACCTA------AAT-TATCAAA-TTATCAACCATATCCCTAA-ATGAA-AT-AAAGA--T-A--GCTTGAATTGAA
gi|8 : AAT-ATATCC-TAA-ACAAA-AT-AAAGA--T-A--GTTTACATTCTATGA-TACATG--CATATAT--TGATTCAATTCAATTACATACAAGTATAAGGTCAA-ATTCCTTTCTGAAATAGACCCACC-T
gi|14 : ttgataatttaggtccgaacattaaaatatagcttaataaaatgATAAATA--TATGTAT--CGATTCAATTCAATTA-----GAA-ATA-GGGCAA-ATTCCATTTTGAAATAGACCTAT
gi|10 : ATGT--TGATTCAATTCAATTA-----GAA-ATA-GGCCAATATTTCATCTCG-AATACGCTCATCTTTTAATAGAATCTGTGC----TTTTAACC-AATTGGTTCAAATAgctcataacatgtaatgatct
gi|5 : atgaaatagcttgaaaataattttccttaaaTA-----GAA-ATA-GACCAA-ACTCCGTTTTGAAATAAATACATC-TTTAATAGGACTTGGCC----CTTTA-CGTAATTGATATATATATA-AAT-ATAAAAT---T-------TGCATG-ATAATT--TGAGA-----ATAATGCCAAATATTCGAGAACTTTGA-------GT-----TTAGAATTTCTTTTTG--------------------ACCAA--TGTT--CAAATACCTGGACACCAACTA-A---AAATAA--TTAG--A--GAT
gi|11 : -ATAATGT---TGC-A---AA----TATT-----TGAGA-----ATATTG---CGT-TCAGA-AATATT-----------------T-GAACTGATCTTTG-AATAG----------TTAGACCCA--TCTT--CAAATAATTAGATA-GAACTATAATTAAGTAA--TTAA--A--GATAAATT
gi|4 : ---TACATGTATG-----TCAAATTCAGATAT------GT-TCAAA-A----T---------AT-----TT-GAACATATTTTTT-ATCTA----------TTAGACCCA--TCTC--CAAATAAGTGAACA-AAA--GTA--CAAATAA--TTAT--AAAGATAAATTTTGATAAAAAAAAAAAAGAAAA-AGATAG-ATTCAATTG-A-ATAC-----ATGTAATCTCAAGTGGTATCAATTTGATT---TACACATGT
gi|18 : T---------AT-----TT-GACCTTATTTTTA-GTTAA----------TTAGACCCA--TCTT--CAAAcaaaaataaatat
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): CAGACGTCGGGATTTCAAATGAAGCCTTATTTAAATACAAGTACATCATTATCAATTACATTGGTCTCTTGTGATTTTTTAGTGGAATTTGTATACGGAATATAATACATAAATGTGATGTTTTCATATATAAATGAAATGGTTTTGAAAGTTCAAAATTAATTTATTACGCTATCTTTTAGAATAAGAATGAA
Unaligned ( gi|12 ): ATTGATCCTAAGTATAAAAATTTGTTTTAAAAAAGATCACTTCACCCGGATACATGTAATCTCAATTTGGTTCAATTAAGTAGTATCAAGTGATT
Unaligned ( gi|19 ): ATCAAGTGATTTAGATACCATAAGTCAAATTCTGATACATGTATGTTTAAAT
Alignments
lowQualScore : 111111111111111111111111111 11111111111111111111111111111
lowQualScore : 11 2222 11 1111 22 11 3333333333333333333333333333 111 11 000000000000000000000000000 1 333333333 1 33333333333 11 11111111111111 2222222222222222 1111111111111 222 1111 1111 3333333 11 1111 6666666666666666666666666 22222222222 777777777777777777777777777777 1111111 111 11111 00000000000000000000000000000 11 44444444444 444444444444
lowQualScore : 66 88 6 6 6 3333 33 2 1 3 3 2222 1 2 0 22 33 1111111111111111111111111111 0 0 777 2 33 222222222222222222222222222 0 3 333333333 0 7 88888888888 999 1 11 1 0 88888888888888 7 0000000000000000 6666666666666 1 1 6 6 99 6 99 1 4 8 3 666 77 0 1 0000 888 5 4 6 7777 2222222 1 11 0000 22 3333333333333333333333333 1 99999999999 6 55 777777777777777777777777777777 1111111 1 0 222 2 55555 99 3 0 8 33333333333333333333333333333 11 33333333333 77 6 1 22 000000000000 11 2 2
lowQualScore : .. .. . . . .... .. . . . . .... . . . .. .. ............................ . . ... . .. ........................... . . ......... . . ........... ... . .. . . .............. . ................ ............. . . . . .. . .. . . . . ... .. . . .... ... . . . .... ....... . .. .... .. ......................... . ........... . .. .............................. ....... . . ... . ..... .. . . . ............................. .. ........... .. . . .. ............ .. . .
lowQualScore : 55 88 0 7 7 3333 88 2 0 0 2 0000 0 5 2 00 88 8888888888888888888888888888 8 2 555 0 88 000000000000000000000000000 0 2 555555555 0 0 00000000000 888 0 00 0 8 00000000000000 8 5555555555555555 5555555555555 0 0 7 7 22 7 22 7 6 0 2 333 99 1 4 6666 888 0 0 7 0000 4444444 0 00 2222 00 6666666666666666666666666 7 88888888888 7 99 444444444444444444444444444444 4444444 6 7 555 5 77777 22 3 8 0 88888888888888888888888888888 00 33333333333 33 7 0 00 000000000000 77 5 5
consensus : TTAACCCGTGCATGCACCGGTGGGTATAAGATA-AT-TA----TATAGTGAATTTGGACGTAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAGATAGAGAGTAC-TATTAT--AT---TAC--GT---TGTATCAT-TAATTACATGGGGAT---TTGTTG--TG----------------A--A--GT---AAATT-TGATGTC-------T-CCAT-AAATT--GAA-T---TTTAT-TAAGCT--ATCCTTTGA-----TA--T----TAAGACCTATC-T-TNAAAT-TA--TCAA-A-TAATCAAC-GTATCCCTAAACGAAA-TA-AAG--AT-A--GGTTAAATTCGAT-AAATAAATA-ATATATAT--TGATTCAATTCAATTAGA----AATA---GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATTCGACC----CTTT-A-C-C-AATTGATTTANA--TATACATNATAATNTNA-CATACAT-GTATA----AT---TGAGAATA---TC--GA--GTTC-AGAAAT-AT----T----GT----------TT-------GAACTTATTTTTGATTAA-TTAGACCCATCTTCAAATAATTGGACA-CAACTATA--TAAGTAAT--TANAGATAAATT-TG-T--G----------------A--A---AAGATAG-CTTCAATTGTA-ATACATG-TATGTAATCTCAAGTNGTATCAATTTGA-T---TACACATATAGTGTNANGTGAACTAGGTAT
Reference ( family-533 ) : TTAACCCGTGCATGCACCNGTGGGTATAAGATA-AT-TA----TATAGTGAATCTGNAAATAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAAATAGAGAGTACGTATTAT--AT---CAC--GT---TGTATCAT-TAATTACATGGGGAT---TTGTCG--TG----------------A--A--GT---AAATT-TGATGTC-------T-CCAT-AAATT--GAA-T---TTTAT-TAAGNT--ATNCTTTGA-----TA--T----TAAGACCTATC-T-TCAAAT-TA--TCAA-A-CAATCAAC-GTATCCCTNAACGAAA-TA-AAG--AT-A--GGTTAAATTCGAT-AAATAAATA-ATATATAT--TGATTCAATTCAATTAGA----AATA---GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATCTGACC----CTTT-A-C-C-AATTGGTTTANA--TATACANTATAANNTNA-CATACAT-GTATN----A----TGAGAATA---TC--GA--GTTC-AGAAAT-AT----T----GT----------TT-------GAACTTATTTTTGNTTAA-TTAGACCCATCTTCAAATAATTGGACG-NAACTATA--TAAATAAT--TANAGATAAATT-TG-T--G----------------A--A---AAGATAG-NTTCAATTGTA-ATACATGATATGCAATCGCAAGTNGNNTCAATTTGATT---TACACANGTAGTGTGACGTGAATTAAGTAT
gi|1 : TCAACCCGTACATG----GGTGGATATAAAATA-AT-TACGTGTATAGTGAATTTGGACGTAAAAATCACACAGTGGGGTTTTGAAGCCTTCGTTGAATGAAGATA-----TATTTATTAT--ATAAATACCAGTATTTTTATCA---AATC-CATGGGAAT---TTCTTG--TG----------------A--A--AT---AAATT-TGATGTT-------T-CCAT-AGATTTGAAA-T---TTTAT-TTAGCT--ATCCTTTGA-----TA--T----CAAGTCCTATC-T-TTTAAT-TA--TCAA-A-TACTCAGT-ATATCCCTCAACGAAA-TG-AAG--AT-A--GGTTAAATTCAAT-AAATAAATAGATATATAT--TGCTTCAATTCAATTAAA----AATA---GGTCAA-ATTCCTTTTTGAAATAGACCCATC-TTTAAAAGAATTCGACC----CCTT-A-T-CGAATTGATTTAGA--TATACACTATAATGTCA-CATACAT-GTAT-----A----TGAGAATA---TT--GA--GTTT-AGAAAT-GT----T----GT----------TT-------GAACTTATCTTTGCTTAA-TTAAACCCATCTGCAAATAATTGGACA-CAACTATA--TAAGTAAT--TGTAGATAAA-T-TG-T--G----------------T--T---CAGATAG-CTTCAATTATACATACATG-TATGTAATCTCAAGTAGTATCAATTTAAGTACATATACATATAGTATCAAGTGAACTAGATAT
gi|10 : ATGT--TGATTCAATTCAATTAGA----AATA---GGCCAATATTTCATCTCG-AATACGCTCATCTTTTAATAGAATCTGTGC----TTTTAA-C-C-AATTGGTTCAAA--TAgcccaattccatttcaggttttttttaatcaggcccataat
gi|11 : atgaaatagcttgaaaataattttccttaaaATAATGTTG-CAAA-----TATT---------TGAGAATA---TT--GC--GTTC-AGAAAT-AT----T-----------------T-------GAACTGATCTTTGAATAG-TTAGACCCATCTTCAAATAATTAGATA-GAACTATAATTAAGTAAT--TAAAGATAAATT-
gi|13 : A-T---TTTAT-TAAGCT--ATATTTTAA-----TG--T----TCGGACCTA--------AAT-TA--TCAA-A-TTATCAACCATATCCCTAAATGAAA-TA-AAG--AT-A--GCTTGAATT
gi|14 : ATAAATA--TATGTAT--CGATTCAATTCAATTAGA----AATA---GGGCAA-ATTCCATTTTGAAATAGACCTATgaa
gi|15 : TTAACCCGTACACACATC----GATATATGATACATGTAAT--TATAGTGAGTGTGGAAGTAAAAATCTGACG-TGGAGTgctcataacatgtaatgatct
gi|16 : aTTAACCCATGCATGCACCAGTGGG--TAAGATA-AT-TA----TAT--TAAATCTATGCATAAAAATCAGACAT
gi|17 : aTTAACCCATGCATGCACCAGTGGG--TAAGATA-AT-TA----TAT--TAAATCTATGCATAAAAATCAGACATc
gi|18 : aGGAAT-AT----T-----------------T-------GACCTTATTTTTAGTTAA-TTAGACCCATCTTCAAAc
gi|2 : taagtggacataaaagatgTTAGCCCATGCATGCATGGGTAAATGTAGGGTG-AT-TA----TATAGAGAATTTGGAAATAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAAATAGAGAGTACGTATTAT--AT---CAC--GT---TGTATCAT-TAATTACATGAAGGT---TTGTTG--TGATTGTTTTTTATTTGAA--A--ATGA-AAATT-AGA--TCGAAATAAT-GCAT-AAATT--TTA-TGTCTTCATATAAGTGAAATAATTTGAAATTTTA--T----CAAG--CTATC-C-TC---------TCAA-ATTAGTGAAC-GTATCCCCGAGCG-AA-TATAAG--AT-A--GGGT-AATTTGAT-AAATG---A-ATATAAAT--TGATTCTATTCAATTCCA----AATA---TGTCAG-ATTTCGTATTGAAATAGGGCCATA-TTTAATCGAATCTGACCAAATCTTT-------AGTTGATTTAGAGTTATAC-TAATGATTTGA--AGACAGAGTAAA----ATATTTGATAATT---TC--AA--GTTT-AGAAATAAT----TTATGGT----------TTTTTAAAAAAACATATTTGAACTTAGTTTTGA-------TTAAATAATTGAATG-CAAGTACA--TATATAAT------------TT-TG-TTCA----------------AACA---AAGATAGTTTTTAATTGT------ATGATAT-CAATTGCAAGTTGGCTCAAT-------------CAAATAGTGTGACGTGAATTAAGTAT
gi|3 : TAGAAAGTGC--ATTATGAAT---TAC--AT----GTA-CATGTGGTTTT-TTGTGATAAGTTGTTGATTG----------------A--ATAGT---AAATG-TGATGTC-------T-CCATTAAATT--GAAAT---GGTAT---AGAT--ATCCTTTGA-----TA--T----TAAGACCCATC-T-TCAAAT-CA--TCA---------AAC-GTGTCCTTATACGAAA-TA-AAAACAT-A--TGTTAAATTCACT-AAATAAATATATATATACAATGATTCAGCTGAATTATA----TATA-----T--A-ATTCAATTTTAAAATCGGTCCATC-TGTAATAGAATTCGACT----CTCT-ATT-C-AATTGGTCTATA--TAGACATGATAAATTGAGGATA-AT-GCAAA----ACATTTGGG--TA---TCCTTA--GTTA-AGAAAT-ATTTTAT----GTTTTGTAATTCTT-------GCACTTATTTTTGACTTA-TTCGACCAATCTTCAAATGATTGGACT-TAACTAT------GTAAT--TACAGATAAATTGTGTT--G----------------A--ATACAAGATAG-CTa
gi|4 : cgtatttatagtgTACAT-GTATGTCAAA----TTCAGATA---T-------GTTC-A-AAAT-AT----T-----------------T-------GAACATATTTTTTATCTA-TTAGACCCATCTCCAAATAAGTGAACA-AAA--GTA--CAAATAATTATAAAGATAAATT-T--T--GATAAAAAAAAAAAAGAA--A---AAGATAG-ATTCAATTG-A-ATAC-----ATGTAATCTCAAGTGGTATCAATTTGATT---TACACATGT
gi|5 : TAGA----AATA---GACCAA-ACTCCGTTTTGAAATAAATACATC-TTTAATAGGACTTGGCC----CTTT-A-CGT-AATTGATATATA--TATA-AATATAAAATT----TGCAT-G-ATA----ATT--TGAGAATAATGCC--AAATATTCGAGAACT--T----TGA--GT----------TTA------GAATTTCTTTTT----------GACCAATGTTCAAATACCTGGACACCAACTA-A---AAATAAT--TAGAGATcaaaaataaatat
gi|7 : ATGGGGAT---TTGTCG--TG----------------ATTC--GTTTGAAATTGTGATGTC-------TCCCAT-A---T--G--------TTAT-TATGCT--GTCC-TTGA-----TA--CATTATAAGACCTATA-TATAAAGA-TA--TCAA-A-CAACCA---------CACAACGAAATTA-AAG--ATCACCGGTTAAATTCAATAAAATAAAT--------------ATTCAA------TAGA----AATA---GGTAAA-AT
gi|8 : TTGA-----TAATT----TAGGTCCGAACAT-TAAAATATAGCTTAATA-AAATGAAT-ATATCC-TAAACAAAA-TA-AAG--AT-A--GTTTACATTCTAT-GA-TACATG--CATATAT--TGATTCAATTCAATTACATACAAGTATAAGGTCAA-ATTCCTTTCTGAAATAGACCCACC-T
gi|9 : TTAACCCGTGTATGCAC----GGGTATA---TA-AT-T----------TGAATTTGAAAGTAAAAATCATACATTGGAGGTTTGAAGCCTT--A-----AAAGGCAGAGAGTAC-CAGTAT--AT---TAC--AC---TGTGTGA------TACATG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CAGACGTCGGGATTTCAAATGAAGCCTTATTTAAATACAAGTACATCATTATCAATTACATTGGTCTCTTGTGATTTTTTAGTGGAATTTGTATACGGAATATAATACATAAATGTGATGTTTTCATATATAAATGAAATGGTTTTGAAAGTTCAAAATTAATTTATTACGCTATCTTTTAGAATAAGAATGAA
Unaligned ( gi|12 ): ATTGATCCTAAGTATAAAAATTTGTTTTAAAAAAGATCACTTCACCCGGATACATGTAATCTCAATTTGGTTCAATTAAGTAGTATCAAGTGATT
Unaligned ( gi|19 ): ATCAAGTGATTTAGATACCATAAGTCAAATTCTGATACATGTATGTTTAAAT
Alignments
lowQualScore : 111111111111111111111111111 111111111111111111111111111111111111111 1111111111111111111111111111
lowQualScore : 11 2222 11 1111 222 11 111 22222222 33333333 111 11 000000000000000000000000000 1 333333333 1 33333333333 111 11111111111111 1111111111111111 222222222222 222 1111 1111 333333 11 1 2222 55555555555555555 22222222222 000000000000000000000000000000000000000 11111 0000000000000000000000000000 3333333333333333 77777777777777
lowQualScore : 44 88 6 6 6 3333 33 1 2 3 2222 2 0 777 33 777 77777777 3 11111111 0 0 777 33 222222222222222222222222222 0 3 333333333 0 7 77777777777 999 5 444 0 88888888888888 7 8888888888888888 6 111111111111 5 1 6 6 99 6 99 1 4 8 3 666 77 0 1 0000 888 5 4 6 7777 222222 1 11 3 0 22 2222 1 11111111111111111 3 99999999999 6 55 000000000000000000000000000000000000000 5 333 8 1 0 77 2 55555 77 3 1 6 2222222222222222222222222222 8 3333333333333333 1 66 33333333333333 4 0 1 1
lowQualScore : .. .. . . . .... .. . . . .... . . ... .. ... ........ . ........ . . ... .. ........................... . . ......... . . ........... ... . ... . .............. . ................ . ............ . . . . .. . .. . . . . ... .. . . .... ... . . . .... ...... . .. . . .. .... . ................. . ........... . .. ....................................... . ... . . . .. . ..... .. . . . ............................ . ................ . .. .............. . . . .
lowQualScore : 55 88 0 7 7 3333 88 0 5 2 0000 5 2 000 88 555 22222222 2 55555555 8 2 555 88 000000000000000000000000000 0 2 555555555 0 0 99999999999 888 0 000 8 00000000000000 8 7777777777777777 7 000000000000 2 5 7 7 22 7 22 7 6 0 2 333 99 1 4 6666 888 0 0 7 0000 444444 0 00 2 8 44 8888 0 77777777777777777 2 88888888888 7 99 999999999999999999999999999999999999999 7 333 9 3 7 77 5 77777 99 0 4 7 8888888888888888888888888888 0 0000000000000000 0 55 88888888888888 0 7 0 0
consensus : TTAACCCGTGCATGCACCGGTGGGTATAAGATA-AT-TA----TATAGTGAATTTGGACGTAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAGATAGAGAGTAC-T-ATTAT--AT---TAC--GT---TGTATCAT-TAATTACATGGGGAT---TTGTTG--TG----------------A--A--GT---AAATT-TGATGTC-------T-CCAT-AAATT--GAA-T---TTTAT-TAAGCT---ATCCTTTGA-----TA--T----TAAGACCTATC-T-TNAAAT-TA--TCAA-A-TAATCA-AC-GTATCCCTAAACGAAA-TA-AAGA--T-A--GGTTAAATTCGAT-AAATAAATA-ATATATAT--TGATTCAATTCAATTAGA----AATA---GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATTCGACC----CTTT-AC-C-AATTGATTTANA--TATACATNATAATNTNAC-ATACAT-GT---AT----AA---TTGAGAATA---TCG--A--GTTC-AGAAAT-AT---------------------T---------GT-----TT-GAACTTATTTTTGATTAATTAGACCCATCTTCAAATAATTGGACA-CAACTATA--TAAGTAAT--TANAGATAAATT-TGTT---G----------------A--A---AAGATAG-CTTCAATTGTA-ATACATG-TATGTAATCTCAAGTNGNNTCAATTTGA--TAC----ACANGTAGTATCAAGTGAACTAGGTAT
Reference ( family-533 ) : TTAACCCGTGCATGCACCGGTGGGTATAAGATA-AT-TA----TATAGTGAATTTGGACGTAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAGATAGAGAGTAC-T-ATTAT--AT---TAC--GT---TGTATCAT-TAATTACATGGGGAT---TTGTTG--TG----------------A--A--GT---AAATT-TGATGTC-------T-CCAT-AAATT--GAA-T---TTTAT-TAAGCT---ATCCTTTGA-----TA--T----TAAGACCTATC-T-TNAAAT-TA--TCAA-A-TAATCA-AC-GTATCCCTAAACGAAA-TA-AAGA--T-A--GGTTAAATTCGAT-AAATAAATA-ATATATAT--TGATTCAATTCAATTAGA----AATA---GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATTCGACC----CTTT-AC-C-AATTGATTTANA--TATACATNATAATNTNAC-ATACAT-GT---AT----AA---TTGAGAATA---TCG--A--GTTC-AGAAAT-AT---------------------T---------GT-----TT-GAACTTATTTTTGATTAATTAGACCCATCTTCAAATAATTGGACA-CAACTATA--TAAGTAAT--TANAGATAAATT-TGT----G----------------A--A---AAGATAG-CTTCAATTGTA-ATACATG-TATGTAATCTCAAGTNGTATCAATTTGA-TTAC----ACATATAGTGTNANGTGAACTAGGTAT
gi|1 : TCAACCCGTACATG----GGTGGATATAAAATA-AT-TACGTGTATAGTGAATTTGGACGTAAAAATCACACAGTGGGGTTTTGAAGCCTTCGTTGAATGAAGATA-----TAT-TTATTAT--ATAAATACCAGTATTTTTATCA---AATC-CATGGGAAT---TTCTTG--TG----------------A--A--AT---AAATT-TGATGTT-------T-CCAT-AGATTTGAAA-T---TTTAT-TTAGCT---ATCCTTTGA-----TA--T----CAAGTCCTATC-T-TTTAAT-TA--TCAA-A-TACTCA-GT-ATATCCCTCAACGAAA-TG-AAGA--T-A--GGTTAAATTCAAT-AAATAAATAGATATATAT--TGCTTCAATTCAATTAAA----AATA---GGTCAA-ATTCCTTTTTGAAATAGACCCATC-TTTAAAAGAATTCGACC----CCTT-AT-CGAATTGATTTAGA--TATACACTATAATGTCAC-ATACAT-GT---AT----A-----TGAGAATA---TTG--A--GTTT-AGAAAT-GT---------------------T---------GT-----TT-GAACTTATCTTTGCTTAATTAAACCCATCTGCAAATAATTGGACA-CAACTATA--TAAGTAAT--TGTAGATAAA-T-TGT----G----------------T--T---CAGATAG-CTTCAATTATACATACATG-TATGTAATCTCAAGTAGTATCAATTTAA-GTACATATACATATAGTATCAAGTGAACTAGATAT
gi|10 : ATGT--TGATTCAATTCAATTAGA----AATA---GGCCAATATTTCATCTCG-AATACGCTCATCTTTTAATAGAATCTGTGC----TTTTAAC-C-AATTGGTTCAAA--TAgcccaattccatttcaggttttttttaatcaggcccataat
gi|11 : atgaaatagcttgaaaataattttccttaaaATAATGTTGC-AAATAT-----------------TTGAGAATA---TTG--C--GTTC-AGAAAT-AT---------------------T-----------------T-GAACTGATCTTTGAATAGTTAGACCCATCTTCAAATAATTAGATA-GAACTATAATTAAGTAAT--TAAAGATAAATT-
gi|12 : TAAG--TATAAA--AATT-TGTTTTAA----------------A--A---AAGATCA-CTTCACCCG-G-ATACATG-T----AATCTCAATTTGGTTCAATT--------------AAGTAGTATCAAGTGA
gi|13 : attgatccA-T---TTTAT-TAAGCT---ATATTTTAA-----TG--T----TCGGACCTA--------AAT-TA--TCAA-A-TTATCA-ACCATATCCCTAAATGAAA-TA-AAGA--T-A--GCTTGAATTtt
gi|14 : ATAAATA--TATGTAT--CGATTCAATTCAATTAGA----AATA---GGGCAA-ATTCCATTTTGAAATAGACCTATgaa
gi|15 : TTAACCCGTACACACATC----GATATATGATACATGTAAT--TATAGTGAGTGTGGAAGTAAAAATCTGACG-TGGAGTgctcataacatgtaatgatct
gi|16 : aTTAACCCATGCATGCACCAGTGGG--TAAGATA-AT-TA----TAT--TAAATCTATGCATAAAAATCAGACAT
gi|17 : aTTAACCCATGCATGCACCAGTGGG--TAAGATA-AT-TA----TAT--TAAATCTATGCATAAAAATCAGACATc
gi|18 : aGGAAT-AT---------------------T-----------------T-GACCTTATTTTTAGTTAATTAGACCCATCTTCAAAc
gi|2 : taagtggacataaaagatgTTAGCCCATGCATGCATGGGTAAATGTAGGGTG-AT-TA----TATAGAGAATTTGGAAATAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAAATAGAGAGTACGT-ATTAT--AT---CAC--GT---TGTATCAT-TAATTACATGAAGGT---TTGTTG--TGATTGTTTTTTATTTGAA--A--ATGA-AAATT-AGA--TCGAAATAAT-GCAT-AAATT--TTA-TGTCTTCATATAAG-TGAAATAATTTGAAATTTTA--T----CAAG--CTATC-C-TC---------TCAA-ATTAGTGA-AC-GTATCCCCGAGCG-AA-TATAAGA--T-A--GGGT-AATTTGAT-AAATG---A-ATATAAAT--TGATTCTATTCAATTCCA----AATA---TGTCAG-ATTTCGTATTGAAATAGGGCCATA-TTTAATCGAATCTGACCAAATCTTT------AGTTGATTTAGAGTTATAC-TAATGATTTGA--AGACAGAGTAAAAT----AT---TTGATAATT---TCA--A--GTTT-AGAAATAATTTATGGTTTTTTAAAAAAACAT---------AT-----TT-GAACTTAGTTTTGATT----------------AAATAATTGAATG-CAAGTACA--TATATAAT------------TT-TGTTC--A----------------AACA---AAGATAGTTTTTAATTGT------ATGATAT-CAATTGCAAGTTGGCTCAAT--------------CAAATAGTGTGACGTGAATTAAGTAT
gi|3 : TAGAAAGTGC---ATTATGAAT---TAC--AT----GTA-CATGTGGTTTT-TTGTGATAAGTTGTTGATTG----------------A--ATAGT---AAATG-TGATGTC-------T-CCATTAAATT--GAAAT---GGTAT---AGAT---ATCCTTTGA-----TA--T----TAAGACCCATC-T-TCAAAT-CA--TCAA-A---------C-GTGTCCTTATACGAAA-TA-AAAACAT-A--TGTTAAATTCACT-AAATAAATATATATATACAATGATTCAGCTGAATTATA----TATA-----T--A-ATTCAATTTTAAAATCGGTCCATC-TGTAATAGAATTCGACT----CTCT-ATTC-AATTGGTCTATA--TAGACATGATAAATTGAGGATA-AT-GC---AA----AACATTTGGG--TA---TCCTTA--GTTA-AGAAAT-AT---------------------TTTATGTTTTGTAATTCTT-GCACTTATTTTTGACTTATTCGACCAATCTTCAAATGATTGGACT-TAACTAT------GTAAT--TACAGATAAATTGTGTT---G----------------A--ATACAAGATAG-CTa
gi|4 : cgtatttatagtgTACAT-GT---ATGTCAAA---TTCAGA-TA---T-------GTTC-A-AAAT-AT---------------------T-----------------T-GAACATATTTTTTATCTATTAGACCCATCTCCAAATAAGTGAACA-AAA--GTA--CAAATAATTATAAAGATAAATT-T-T----GATAAAAAAAAAAAAGAA--A---AAGATAG-ATTCAATTG-A-ATAC-----ATGTAATCTCAAGTGGTATCAATTTGATTTAC----ACATGT
gi|5 : TAGA----AATA---GACCAA-ACTCCGTTTTGAAATAAATACATC-TTTAATAGGACTTGGCC----CTTT-ACGT-AATTGATATATA--TATAAAT-ATAAAATT----TGCAT-G----AT----AAT--TTGAGAATAATGCCA--AATATTCGAGAACT--T---------------------TGA-------GT-----TTAGAATTTCTTTTT---------GACCAATGTTCAAATACCTGGACACCAACTA-A---AAATAAT--TAGAGATcaaaaataaatat
gi|7 : ATGGGGAT---TTGTCG--TG----------------ATTC--GTTTGAAATTGTGATGTC-------TCCCAT-A---T--G--------TTAT-TATGCT---GTCC-TTGA-----TA--CATTATAAGACCTATA-TATAAAGA-TA--TCAA-A-CAACCACAC----------AACGAAATTA-AAGA--TCACCGGTTAAATTCAATAAAATAAAT--------------ATTCAA------TAGA----AATA---GGTAAA-AT
gi|8 : TTGA-----TAATT----TAGGTCCGAACAT-TAAAATATAGCTTAATA-AAATGA-AT-ATATCC-TAAACAAAA-TA-AAGA--T-A--GTTTACATTCTAT-GA-TACATG--CATATAT--TGATTCAATTCAATTACATACAAGTATAAGGTCAA-ATTCCTTTCTGAAATAGACCCACC-T
gi|9 : TTAACCCGTGTATGCAC----GGGTATA---TA-AT-T----------TGAATTTGAAAGTAAAAATCATACATTGGAGGTTTGAAGCCTT--A-----AAAGGCAGAGAGTAC-C-AGTAT--AT---TAC--AC---TGTGTGA------TACATG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CAGACGTCGGGATTTCAAATGAAGCCTTATTTAAATACAAGTACATCATTATCAATTACATTGGTCTCTTGTGATTTTTTAGTGGAATTTGTATACGGAATATAATACATAAATGTGATGTTTTCATATATAAATGAAATGGTTTTGAAAGTTCAAAATTAATTTATTACGCTATCTTTTAGAATAAGAATGAA
Unaligned ( gi|19 ): ATCAAGTGATTTAGATACCATAAGTCAAATTCTGATACATGTATGTTTAAAT
Alignments
lowQualScore : 111111111111111111111111111 111111111111111111111111111111111111111
lowQualScore : 11 2222 11 1111 222 11 111 22222222 33333333 111 11 000000000000000000000000000 1 333333333 1 33333333333 111 11111111111111 1111111111111111 222222222222 222 1111 1111 333333 11 1 2222 55555555555555555 22222222222 000000000000000000000000000000000000000 11111 11 9999999999999999999999999999 3333333333333333 777777777777777
lowQualScore : 44 88 6 6 6 3333 33 1 2 3 2222 2 0 777 33 777 77777777 3 11111111 0 0 777 33 222222222222222222222222222 0 3 333333333 0 7 77777777777 999 5 444 0 88888888888888 7 8888888888888888 6 111111111111 5 1 6 6 99 6 99 1 4 8 3 666 77 0 1 0000 888 5 4 6 7777 222222 1 11 3 0 22 2222 1 11111111111111111 3 99999999999 6 55 000000000000000000000000000000000000000 5 333 8 1 0 77 2 55555 77 3 1 44 4444444444444444444444444444 8 3333333333333333 1 22 666666666666666 1
lowQualScore : .. .. . . . .... .. . . . .... . . ... .. ... ........ . ........ . . ... .. ........................... . . ......... . . ........... ... . ... . .............. . ................ . ............ . . . . .. . .. . . . . ... .. . . .... ... . . . .... ...... . .. . . .. .... . ................. . ........... . .. ....................................... . ... . . . .. . ..... .. . . .. ............................ . ................ . .. ............... .
lowQualScore : 55 88 0 7 7 3333 88 0 5 2 0000 5 2 000 88 555 22222222 2 55555555 8 2 555 88 000000000000000000000000000 0 2 555555555 0 0 99999999999 888 0 000 8 00000000000000 8 7777777777777777 7 000000000000 2 5 7 7 22 7 22 7 6 0 2 333 99 1 4 6666 888 0 0 7 0000 444444 0 00 2 8 44 8888 0 77777777777777777 2 88888888888 7 99 999999999999999999999999999999999999999 7 333 9 3 7 77 5 77777 99 0 4 11 8888888888888888888888888888 0 0000000000000000 0 00 222222222222222 0
consensus : TTAACCCGTGCATGCACCGGTGGGTATAAGATA-AT-TA----TATAGTGAATTTGGACGTAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAGATAGAGAGTAC-T-ATTAT--AT---TAC--GT---TGTATCAT-TAATTACATGGGGAT---TTGTTG--TG----------------A--A--GT---AAATT-TGATGTC-------T-CCAT-AAATT--GAA-T---TTTAT-TAAGCT---ATCCTTTGA-----TA--T----TAAGACCTATC-T-TNAAAT-TA--TCAA-A-TAATCA-AC-GTATCCCTAAACGAAA-TA-AAGA--T-A--GGTTAAATTCGAT-AAATAAATA-ATATATAT--TGATTCAATTCAATTAGA----AATA---GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATTCGACC----CTTT-AC-C-AATTGATTTANA--TATACATNATAATNTNAC-ATACAT-GT---AT----AA---TTGAGAATA---TCG--A--GTTC-AGAAAT-AT---------------------T---------GT-----TT-GAACTTATTTTTGATTAATTAGACCCATCTTCAAATAATTGGACA-CAACTATA--TAAGTAAT--TANAGATAAATT-TGTT---G----------------A---A---AAGATAG-CTTCAATTGTA-ATACATG-TATGTAATCTCAAGTNGNNTCAATTTG-----A--TACACANGTAGTATCAAGTGAACTAGGTAT
Reference ( family-533 ) : TTAACCCGTGCATGCACCGGTGGGTATAAGATA-AT-TA----TATAGTGAATTTGGACGTAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAGATAGAGAGTAC-T-ATTAT--AT---TAC--GT---TGTATCAT-TAATTACATGGGGAT---TTGTTG--TG----------------A--A--GT---AAATT-TGATGTC-------T-CCAT-AAATT--GAA-T---TTTAT-TAAGCT---ATCCTTTGA-----TA--T----TAAGACCTATC-T-TNAAAT-TA--TCAA-A-TAATCA-AC-GTATCCCTAAACGAAA-TA-AAGA--T-A--GGTTAAATTCGAT-AAATAAATA-ATATATAT--TGATTCAATTCAATTAGA----AATA---GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATTCGACC----CTTT-AC-C-AATTGATTTANA--TATACATNATAATNTNAC-ATACAT-GT---AT----AA---TTGAGAATA---TCG--A--GTTC-AGAAAT-AT---------------------T---------GT-----TT-GAACTTATTTTTGATTAATTAGACCCATCTTCAAATAATTGGACA-CAACTATA--TAAGTAAT--TANAGATAAATT-TGTT---G----------------A---A---AAGATAG-CTTCAATTGTA-ATACATG-TATGTAATCTCAAGTNGNNTCAATTTG-----A--TACACANGTAGTATCAAGTGAACTAGGTAT
gi|1 : TCAACCCGTACATG----GGTGGATATAAAATA-AT-TACGTGTATAGTGAATTTGGACGTAAAAATCACACAGTGGGGTTTTGAAGCCTTCGTTGAATGAAGATA-----TAT-TTATTAT--ATAAATACCAGTATTTTTATCA---AATC-CATGGGAAT---TTCTTG--TG----------------A--A--AT---AAATT-TGATGTT-------T-CCAT-AGATTTGAAA-T---TTTAT-TTAGCT---ATCCTTTGA-----TA--T----CAAGTCCTATC-T-TTTAAT-TA--TCAA-A-TACTCA-GT-ATATCCCTCAACGAAA-TG-AAGA--T-A--GGTTAAATTCAAT-AAATAAATAGATATATAT--TGCTTCAATTCAATTAAA----AATA---GGTCAA-ATTCCTTTTTGAAATAGACCCATC-TTTAAAAGAATTCGACC----CCTT-AT-CGAATTGATTTAGA--TATACACTATAATGTCAC-ATACAT-GT---AT----A-----TGAGAATA---TTG--A--GTTT-AGAAAT-GT---------------------T---------GT-----TT-GAACTTATCTTTGCTTAATTAAACCCATCTGCAAATAATTGGACA-CAACTATA--TAAGTAAT--TGTAGATAAATTGTGTT----------------------------CAGATAG-CTTCAATTATACATACATG-TATGTAATCTCAAGTAGTATCAATTTAAGTACA--TATACATATAGTATCAAGTGAACTAGATAT
gi|10 : ATGT--TGATTCAATTCAATTAGA----AATA---GGCCAATATTTCATCTCG-AATACGCTCATCTTTTAATAGAATCTGTGC----TTTTAAC-C-AATTGGTTCAAA--TAgcccaattccatttcaggttttttttaatcaggcccataat
gi|11 : atgaaatagcttgaaaataattttccttaaaATAATGTTGC-AAATAT-----------------TTGAGAATA---TTG--C--GTTC-AGAAAT-AT---------------------T-----------------T-GAACTGATCTTTGAATAGTTAGACCCATCTTCAAATAATTAGATA-GAACTATAATTAAGTAAT--TAAAGATAAATT-
gi|12 : TAAG--TATAAA--AATT-TGTTTTAA----------------A---A---AAGATCA-CTTCACCCG-G-ATACATG-T----AATCTCAATTTGGTTCAATT---------------AAGTAGTATCAAGTGA
gi|13 : attgatccA-T---TTTAT-TAAGCT---ATATTTTAA-----TG--T----TCGGACCTA--------AAT-TA--TCAA-A-TTATCA-ACCATATCCCTAAATGAAA-TA-AAGA--T-A--GCTTGAATTtt
gi|14 : ATAAATA--TATGTAT--CGATTCAATTCAATTAGA----AATA---GGGCAA-ATTCCATTTTGAAATAGACCTATgaa
gi|15 : TTAACCCGTACACACATC----GATATATGATACATGTAAT--TATAGTGAGTGTGGAAGTAAAAATCTGACG-TGGAGTgctcataacatgtaatgatct
gi|16 : aTTAACCCATGCATGCACCAGTGGG--TAAGATA-AT-TA----TAT--TAAATCTATGCATAAAAATCAGACAT
gi|17 : aTTAACCCATGCATGCACCAGTGGG--TAAGATA-AT-TA----TAT--TAAATCTATGCATAAAAATCAGACATc
gi|18 : aGGAAT-AT---------------------T-----------------T-GACCTTATTTTTAGTTAATTAGACCCATCTTCAAAc
gi|2 : taagtggacataaaagatgTTAGCCCATGCATGCATGGGTAAATGTAGGGTG-AT-TA----TATAGAGAATTTGGAAATAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAAATAGAGAGTACGT-ATTAT--AT---CAC--GT---TGTATCAT-TAATTACATGAAGGT---TTGTTG--TGATTGTTTTTTATTTGAA--A--ATGA-AAATT-AGA--TCGAAATAAT-GCAT-AAATT--TTA-TGTCTTCATATAAG-TGAAATAATTTGAAATTTTA--T----CAAG--CTATC-C-TC---------TCAA-ATTAGTGA-AC-GTATCCCCGAGCG-AA-TATAAGA--T-A--GGGT-AATTTGAT-AAATG---A-ATATAAAT--TGATTCTATTCAATTCCA----AATA---TGTCAG-ATTTCGTATTGAAATAGGGCCATA-TTTAATCGAATCTGACCAAATCTTT------AGTTGATTTAGAGTTATAC-TAATGATTTGA--AGACAGAGTAAAAT----AT---TTGATAATT---TCA--A--GTTT-AGAAATAATTTATGGTTTTTTAAAAAAACAT---------AT-----TT-GAACTTAGTTTTGATT----------------AAATAATTGAATG-CAAGTACA--TATATAAT------------TT-TGTT---C----------------AAACA---AAGATAGTTTTTAATTGT------ATGATAT-CAATTGCAAGTTGGCTCAAT---------------CAAATAGTGTGACGTGAATTAAGTAT
gi|3 : TAGAAAGTGC---ATTATGAAT---TAC--AT----GTA-CATGTGGTTTT-TTGTGATAAGTTGTTGATTG----------------A--ATAGT---AAATG-TGATGTC-------T-CCATTAAATT--GAAAT---GGTAT---AGAT---ATCCTTTGA-----TA--T----TAAGACCCATC-T-TCAAAT-CA--TCAA-A---------C-GTGTCCTTATACGAAA-TA-AAAACAT-A--TGTTAAATTCACT-AAATAAATATATATATACAATGATTCAGCTGAATTATA----TATA-----T--A-ATTCAATTTTAAAATCGGTCCATC-TGTAATAGAATTCGACT----CTCT-ATTC-AATTGGTCTATA--TAGACATGATAAATTGAGGATA-AT-GC---AA----AACATTTGGG--TA---TCCTTA--GTTA-AGAAAT-AT---------------------TTTATGTTTTGTAATTCTT-GCACTTATTTTTGACTTATTCGACCAATCTTCAAATGATTGGACT-TAACTAT------GTAAT--TACAGATAAATTGTGTT---G----------------A---ATACAAGATAG-CTa
gi|4 : cgtatttatagtgTACAT-GT---ATGTCAAA---TTCAGA-TA---T-------GTTC-A-AAAT-AT---------------------T-----------------T-GAACATATTTTTTATCTATTAGACCCATCTCCAAATAAGTGAACA-AAA--GTA--CAAATAATTATAAAGATAAATT---TT---GATAAAAAAAAAAAAGAA---A---AAGATAG-ATTCAATTG-A-ATAC-----ATGTAATCTCAAGTGGTATCAATTTG-----ATTTACACATGT
gi|5 : TAGA----AATA---GACCAA-ACTCCGTTTTGAAATAAATACATC-TTTAATAGGACTTGGCC----CTTT-ACGT-AATTGATATATA--TATAAAT-ATAAAATT----TGCAT-G----AT----AAT--TTGAGAATAATGCCA--AATATTCGAGAACT--T---------------------TGA-------GT-----TTAGAATTTCTTTTT---------GACCAATGTTCAAATACCTGGACACCAACTA-A---AAATAAT--TAGAGATcaaaaataaatat
gi|7 : ATGGGGAT---TTGTCG--TG----------------ATTC--GTTTGAAATTGTGATGTC-------TCCCAT-A---T--G--------TTAT-TATGCT---GTCC-TTGA-----TA--CATTATAAGACCTATA-TATAAAGA-TA--TCAA-A-CAACCACAC----------AACGAAATTA-AAGA--TCACCGGTTAAATTCAATAAAATAAAT--------------ATTCAA------TAGA----AATA---GGTAAA-AT
gi|8 : TTGA-----TAATT----TAGGTCCGAACAT-TAAAATATAGCTTAATA-AAATGA-AT-ATATCC-TAAACAAAA-TA-AAGA--T-A--GTTTACATTCTAT-GA-TACATG--CATATAT--TGATTCAATTCAATTACATACAAGTATAAGGTCAA-ATTCCTTTCTGAAATAGACCCACC-T
gi|9 : TTAACCCGTGTATGCAC----GGGTATA---TA-AT-T----------TGAATTTGAAAGTAAAAATCATACATTGGAGGTTTGAAGCCTT--A-----AAAGGCAGAGAGTAC-C-AGTAT--AT---TAC--AC---TGTGTGA------TACATG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CAGACGTCGGGATTTCAAATGAAGCCTTATTTAAATACAAGTACATCATTATCAATTACATTGGTCTCTTGTGATTTTTTAGTGGAATTTGTATACGGAATATAATACATAAATGTGATGTTTTCATATATAAATGAAATGGTTTTGAAAGTTCAAAATTAATTTATTACGCTATCTTTTAGAATAAGAATGAA
Unaligned ( gi|19 ): ATCAAGTGATTTAGATACCATAAGTCAAATTCTGATACATGTATGTTTAAAT
Alignments
lowQualScore : 111111111111111111111111111 111111111111111111111111111111111111111
lowQualScore : 11 2222 11 1111 222 11 111 22222222 33333333 111 11 000000000000000000000000000 1 333333333 1 33333333333 111 11111111111111 1111111111111111 222222222222 222 1111 1111 333333 11 1 2222 55555555555555555 22222222222 000000000000000000000000000000000000000 11111 11 9999999999999999999999999999 3333333333333333 777777777777777
lowQualScore : 44 88 6 6 6 3333 33 1 2 3 2222 2 0 777 33 777 77777777 3 11111111 0 0 777 33 222222222222222222222222222 0 3 333333333 0 7 77777777777 999 5 444 0 88888888888888 7 8888888888888888 6 111111111111 5 1 6 6 99 6 99 1 4 8 3 666 77 0 1 0000 888 5 4 6 7777 222222 1 11 3 0 22 2222 1 11111111111111111 3 99999999999 6 55 000000000000000000000000000000000000000 5 333 8 1 0 77 2 55555 77 3 1 44 4444444444444444444444444444 8 3333333333333333 1 22 666666666666666 1
lowQualScore : .. .. . . . .... .. . . . .... . . ... .. ... ........ . ........ . . ... .. ........................... . . ......... . . ........... ... . ... . .............. . ................ . ............ . . . . .. . .. . . . . ... .. . . .... ... . . . .... ...... . .. . . .. .... . ................. . ........... . .. ....................................... . ... . . . .. . ..... .. . . .. ............................ . ................ . .. ............... .
lowQualScore : 55 88 0 7 7 3333 88 0 5 2 0000 5 2 000 88 555 22222222 2 55555555 8 2 555 88 000000000000000000000000000 0 2 555555555 0 0 99999999999 888 0 000 8 00000000000000 8 7777777777777777 7 000000000000 2 5 7 7 22 7 22 7 6 0 2 333 99 1 4 6666 888 0 0 7 0000 444444 0 00 2 8 44 8888 0 77777777777777777 2 88888888888 7 99 999999999999999999999999999999999999999 7 333 9 3 7 77 5 77777 99 0 4 11 8888888888888888888888888888 0 0000000000000000 0 00 222222222222222 0
consensus : TTAACCCGTGCATGCACCGGTGGGTATAAGATA-AT-TA----TATAGTGAATTTGGACGTAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAGATAGAGAGTAC-T-ATTAT--AT---TAC--GT---TGTATCAT-TAATTACATGGGGAT---TTGTTG--TG----------------A--A--GT---AAATT-TGATGTC-------T-CCAT-AAATT--GAA-T---TTTAT-TAAGCT---ATCCTTTGA-----TA--T----TAAGACCTATC-T-TNAAAT-TA--TCAA-A-TAATCA-AC-GTATCCCTAAACGAAA-TA-AAGA--T-A--GGTTAAATTCGAT-AAATAAATA-ATATATAT--TGATTCAATTCAATTAGA----AATA---GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATTCGACC----CTTT-AC-C-AATTGATTTANA--TATACATNATAATNTNAC-ATACAT-GT---AT----AA---TTGAGAATA---TCG--A--GTTC-AGAAAT-AT---------------------T---------GT-----TT-GAACTTATTTTTGATTAATTAGACCCATCTTCAAATAATTGGACA-CAACTATA--TAAGTAAT--TANAGATAAATT-TGTT---G----------------A---A---AAGATAG-CTTCAATTGTA-ATACATG-TATGTAATCTCAAGTNGNNTCAATTTG-----A--TACACANGTAGTATCAAGTGAACTAGGTAT
Reference ( family-533 ) : TTAACCCGTGCATGCACCGGTGGGTATAAGATA-AT-TA----TATAGTGAATTTGGACGTAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAGATAGAGAGTAC-T-ATTAT--AT---TAC--GT---TGTATCAT-TAATTACATGGGGAT---TTGTTG--TG----------------A--A--GT---AAATT-TGATGTC-------T-CCAT-AAATT--GAA-T---TTTAT-TAAGCT---ATCCTTTGA-----TA--T----TAAGACCTATC-T-TNAAAT-TA--TCAA-A-TAATCA-AC-GTATCCCTAAACGAAA-TA-AAGA--T-A--GGTTAAATTCGAT-AAATAAATA-ATATATAT--TGATTCAATTCAATTAGA----AATA---GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATTCGACC----CTTT-AC-C-AATTGATTTANA--TATACATNATAATNTNAC-ATACAT-GT---AT----AA---TTGAGAATA---TCG--A--GTTC-AGAAAT-AT---------------------T---------GT-----TT-GAACTTATTTTTGATTAATTAGACCCATCTTCAAATAATTGGACA-CAACTATA--TAAGTAAT--TANAGATAAATT-TGTT---G----------------A---A---AAGATAG-CTTCAATTGTA-ATACATG-TATGTAATCTCAAGTNGNNTCAATTTG-----A--TACACANGTAGTATCAAGTGAACTAGGTAT
gi|1 : TCAACCCGTACATG----GGTGGATATAAAATA-AT-TACGTGTATAGTGAATTTGGACGTAAAAATCACACAGTGGGGTTTTGAAGCCTTCGTTGAATGAAGATA-----TAT-TTATTAT--ATAAATACCAGTATTTTTATCA---AATC-CATGGGAAT---TTCTTG--TG----------------A--A--AT---AAATT-TGATGTT-------T-CCAT-AGATTTGAAA-T---TTTAT-TTAGCT---ATCCTTTGA-----TA--T----CAAGTCCTATC-T-TTTAAT-TA--TCAA-A-TACTCA-GT-ATATCCCTCAACGAAA-TG-AAGA--T-A--GGTTAAATTCAAT-AAATAAATAGATATATAT--TGCTTCAATTCAATTAAA----AATA---GGTCAA-ATTCCTTTTTGAAATAGACCCATC-TTTAAAAGAATTCGACC----CCTT-AT-CGAATTGATTTAGA--TATACACTATAATGTCAC-ATACAT-GT---AT----A-----TGAGAATA---TTG--A--GTTT-AGAAAT-GT---------------------T---------GT-----TT-GAACTTATCTTTGCTTAATTAAACCCATCTGCAAATAATTGGACA-CAACTATA--TAAGTAAT--TGTAGATAAATTGTGTT----------------------------CAGATAG-CTTCAATTATACATACATG-TATGTAATCTCAAGTAGTATCAATTTAAGTACA--TATACATATAGTATCAAGTGAACTAGATAT
gi|10 : ATGT--TGATTCAATTCAATTAGA----AATA---GGCCAATATTTCATCTCG-AATACGCTCATCTTTTAATAGAATCTGTGC----TTTTAAC-C-AATTGGTTCAAA--TAgcccaattccatttcaggttttttttaatcaggcccataat
gi|11 : atgaaatagcttgaaaataattttccttaaaATAATGTTGC-AAATAT-----------------TTGAGAATA---TTG--C--GTTC-AGAAAT-AT---------------------T-----------------T-GAACTGATCTTTGAATAGTTAGACCCATCTTCAAATAATTAGATA-GAACTATAATTAAGTAAT--TAAAGATAAATT-
gi|12 : TAAG--TATAAA--AATT-TGTTTTAA----------------A---A---AAGATCA-CTTCACCCG-G-ATACATG-T----AATCTCAATTTGGTTCAATT---------------AAGTAGTATCAAGTGA
gi|13 : attgatccA-T---TTTAT-TAAGCT---ATATTTTAA-----TG--T----TCGGACCTA--------AAT-TA--TCAA-A-TTATCA-ACCATATCCCTAAATGAAA-TA-AAGA--T-A--GCTTGAATTtt
gi|14 : ATAAATA--TATGTAT--CGATTCAATTCAATTAGA----AATA---GGGCAA-ATTCCATTTTGAAATAGACCTATgaa
gi|15 : TTAACCCGTACACACATC----GATATATGATACATGTAAT--TATAGTGAGTGTGGAAGTAAAAATCTGACG-TGGAGTgctcataacatgtaatgatct
gi|16 : aTTAACCCATGCATGCACCAGTGGG--TAAGATA-AT-TA----TAT--TAAATCTATGCATAAAAATCAGACAT
gi|17 : aTTAACCCATGCATGCACCAGTGGG--TAAGATA-AT-TA----TAT--TAAATCTATGCATAAAAATCAGACATc
gi|18 : aGGAAT-AT---------------------T-----------------T-GACCTTATTTTTAGTTAATTAGACCCATCTTCAAAc
gi|2 : taagtggacataaaagatgTTAGCCCATGCATGCATGGGTAAATGTAGGGTG-AT-TA----TATAGAGAATTTGGAAATAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAAATAGAGAGTACGT-ATTAT--AT---CAC--GT---TGTATCAT-TAATTACATGAAGGT---TTGTTG--TGATTGTTTTTTATTTGAA--A--ATGA-AAATT-AGA--TCGAAATAAT-GCAT-AAATT--TTA-TGTCTTCATATAAG-TGAAATAATTTGAAATTTTA--T----CAAG--CTATC-C-TC---------TCAA-ATTAGTGA-AC-GTATCCCCGAGCG-AA-TATAAGA--T-A--GGGT-AATTTGAT-AAATG---A-ATATAAAT--TGATTCTATTCAATTCCA----AATA---TGTCAG-ATTTCGTATTGAAATAGGGCCATA-TTTAATCGAATCTGACCAAATCTTT------AGTTGATTTAGAGTTATAC-TAATGATTTGA--AGACAGAGTAAAAT----AT---TTGATAATT---TCA--A--GTTT-AGAAATAATTTATGGTTTTTTAAAAAAACAT---------AT-----TT-GAACTTAGTTTTGATT----------------AAATAATTGAATG-CAAGTACA--TATATAAT------------TT-TGTT---C----------------AAACA---AAGATAGTTTTTAATTGT------ATGATAT-CAATTGCAAGTTGGCTCAAT---------------CAAATAGTGTGACGTGAATTAAGTAT
gi|3 : TAGAAAGTGC---ATTATGAAT---TAC--AT----GTA-CATGTGGTTTT-TTGTGATAAGTTGTTGATTG----------------A--ATAGT---AAATG-TGATGTC-------T-CCATTAAATT--GAAAT---GGTAT---AGAT---ATCCTTTGA-----TA--T----TAAGACCCATC-T-TCAAAT-CA--TCAA-A---------C-GTGTCCTTATACGAAA-TA-AAAACAT-A--TGTTAAATTCACT-AAATAAATATATATATACAATGATTCAGCTGAATTATA----TATA-----T--A-ATTCAATTTTAAAATCGGTCCATC-TGTAATAGAATTCGACT----CTCT-ATTC-AATTGGTCTATA--TAGACATGATAAATTGAGGATA-AT-GC---AA----AACATTTGGG--TA---TCCTTA--GTTA-AGAAAT-AT---------------------TTTATGTTTTGTAATTCTT-GCACTTATTTTTGACTTATTCGACCAATCTTCAAATGATTGGACT-TAACTAT------GTAAT--TACAGATAAATTGTGTT---G----------------A---ATACAAGATAG-CTa
gi|4 : cgtatttatagtgTACAT-GT---ATGTCAAA---TTCAGA-TA---T-------GTTC-A-AAAT-AT---------------------T-----------------T-GAACATATTTTTTATCTATTAGACCCATCTCCAAATAAGTGAACA-AAA--GTA--CAAATAATTATAAAGATAAATT---TT---GATAAAAAAAAAAAAGAA---A---AAGATAG-ATTCAATTG-A-ATAC-----ATGTAATCTCAAGTGGTATCAATTTG-----ATTTACACATGT
gi|5 : TAGA----AATA---GACCAA-ACTCCGTTTTGAAATAAATACATC-TTTAATAGGACTTGGCC----CTTT-ACGT-AATTGATATATA--TATAAAT-ATAAAATT----TGCAT-G----AT----AAT--TTGAGAATAATGCCA--AATATTCGAGAACT--T---------------------TGA-------GT-----TTAGAATTTCTTTTT---------GACCAATGTTCAAATACCTGGACACCAACTA-A---AAATAAT--TAGAGATcaaaaataaatat
gi|7 : ATGGGGAT---TTGTCG--TG----------------ATTC--GTTTGAAATTGTGATGTC-------TCCCAT-A---T--G--------TTAT-TATGCT---GTCC-TTGA-----TA--CATTATAAGACCTATA-TATAAAGA-TA--TCAA-A-CAACCACAC----------AACGAAATTA-AAGA--TCACCGGTTAAATTCAATAAAATAAAT--------------ATTCAA------TAGA----AATA---GGTAAA-AT
gi|8 : TTGA-----TAATT----TAGGTCCGAACAT-TAAAATATAGCTTAATA-AAATGA-AT-ATATCC-TAAACAAAA-TA-AAGA--T-A--GTTTACATTCTAT-GA-TACATG--CATATAT--TGATTCAATTCAATTACATACAAGTATAAGGTCAA-ATTCCTTTCTGAAATAGACCCACC-T
gi|9 : TTAACCCGTGTATGCAC----GGGTATA---TA-AT-T----------TGAATTTGAAAGTAAAAATCATACATTGGAGGTTTGAAGCCTT--A-----AAAGGCAGAGAGTAC-C-AGTAT--AT---TAC--AC---TGTGTGA------TACATG
blockSeqs : CA TA T C G AT AG G A T CGAT G GT GA . GTT T TGTGGTTT AAG AT ATTGTTTTTTATTTGAAAATGA G T GAAATAAT T A TTATGTCT ATA C GAA AATTTTAT A ACATTAAAATATAGC T TTATCAACCA C A T T CA C CC G G A A ATA AA G TACA TAA T A T AAAT AACC A GT A A TG GAGG T AGTAAAATAT A ATGCCAAAT G AA TTATGGTTTTTTAAAAAAACATATT A GAA A A CC C TAATT TA A T GT GATAAAAAAAAAAAAGAAA T GATACATGT T GT TTGATTTACA A
blockSeqs : CA TG A . . . AG T C T A G C . . ACT T TTAATTA . . ATTCGTTTG . T TC . A GAAATG TA A . TACATTA A TATATAAAGATA . TTAGTGAACG C G . . . . . A A . A AA . G . . . A . . ATTC G . A G TT TGC C GTATGTCAAA A TCCTTA . A TTTATGTTTTGTAATTCT . AGT A A G G CAT . T T T TTAAAA . TATGATATC T GC T A
blockSeqs : GG TA A . . . . T C T G . . . AT . TA . . AATAGT . . T . . G TA C . TAATT A TCTTCAAATCA . CAACCACAC T A . . . . . A A . A A . C . . . G . . ACGT T . . . AT GA C GCAAAACAT A TTGC . A TGAGTT . GAT T C C C TAC . C T T CAAACA . AATACATGT G TA . T
blockSeqs : C . G . . . . G A T . . . TGT T AATTA . AAATGAATA . A . . . . . A T . C G . T . . . A . . . T . AA T C GATAAT . TCAA . A T . GAC T A T C T . A T . GAATAC .
blockSeqs : . . . . . . . A A . TAT . TCCTC . CG . . . . . . . . . . . G . . . G . . . . T . A T . TAT . . A . A . G .
blockSeqs : . G . . . T . T . . . . . . .
blockSeqs : C . . .
blockSeqCons : CG **** ** TCTTAAAATTA***** AA* G*** GGTAAAAT********* TTATGTTTTTAAT************************** TAT** T* NAAAAA**********************
originalCons : TTAACCCGTGCATGCACCGGTGGGTATAAGATA-AT-TA----TATAGTGAATTTGGACGTAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAGATAGAGAGTAC-T-ATTAT--AT---TAC--GT---TGTATCAT-TAATTACATGGGGAT---TTGTTG--TG----------------A--A--GT---AAATT-TGATGTC-------T-CCAT-AAATT--GAA-T---TTTAT-TAAGCT---ATCCTTTGA-----TA--T----TAAGACCTATC-T-TNAAAT-TA--TCAA-A-TAATCA-AC-GTATCCCTAAACGAAA-TA-AAGA--T-A--GGTTAAATTCGAT-AAATAAATA-ATATATAT--TGATTCAATTCAATTAGA----AATA---GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATTCGACC----CTTT-AC-C-AATTGATTTANA--TATACATNATAATNTNAC-ATACAT-GT---AT----AA---TTGAGAATA---TCG--A--GTTC-AGAAAT-AT---------------------T---------GT-----TT-GAACTTATTTTTGATTAATTAGACCCATCTTCAAATAATTGGACA-CAACTATA--TAAGTAAT--TANAGATAAATT-TGTT---G----------------A---A---AAGATAG-CTTCAATTGTA-ATACATG-TATGTAATCTCAAGTNGNNTCAATTTG-----A--TACACANGTAGTATCAAGTGAACTAGGTAT
finalCons : TTAACCCGTGCATGCACCGGTGGGTATAAGATA-AT-TA----TAT--TGAATTTGGACGTAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAGATAGAGAGTAC-T-ATTAT--AT---TAC--GT---TGTATCAT-TAATTACATGGGGAT---TTGTTG--TG----------------A--A--GT---AAATT-TGATGTC-------T-CCAT-AAATT--GAA-T---TTTAT-TAAGCT---ATCCTTTGA-----TA--T----TAAGACCTATCTTAAAATTA-----TCAA-A-TAATCA-AC-GTATCCCTAAACGAAA-TA-AAGA--T-A--GGTTAAATTCGAT-AAATAAATAA-TATATAT--TGATTCAATTCAATTAGA----AATA---GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATTCGACC----CTTT-AC-C-AATTGATTTANA--TATACATNATAATNTG---ATACATGGTAAAAT---------TTGAGAATA---TCG--A--GTTC-AGAAAT-ATTTATGTTTTTAAT--------------------------T-GAACTTATTTTTGATTAATTAGACCCATCTTCAAATAATTGGACA-CAACTATAT--AAGTAAT--TANAGATAAATTT-GTTNAAAAA----------------------AAGATAG-CTTCAATTGTA-ATACATG-TATGTAATCTCAAGTNGNNTCAATTTG-----A--TACACANGTAGTATCAAGTGAACTAGGTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CAGACGTCGGGATTTCAAATGAAGCCTTATTTAAATACAAGTACATCATTATCAATTACATTGGTCTCTTGTGATTTTTTAGTGGAATTTGTATACGGAATATAATACATAAATGTGATGTTTTCATATATAAATGAAATGGTTTTGAAAGTTCAAAATTAATTTATTACGCTATCTTTTAGAATAAGAATGAA
Unaligned ( gi|19 ): ATCAAGTGATTTAGATACCATAAGTCAAATTCTGATACATGTATGTTTAAAT
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 111 11111 1111 1111 222 11 111 22222222 33333333 111 11 000000000000000000000000000 1 333333333 1 33333333333 111 11111111111111 22222222 111111 11 222 1111 1111 3333333 11 11 6666666666666666666 1111 888888888888888888888888888888888888 11111 1 4444444444444444 555555555555 777777777777777
lowQualScore : 6 111 77777 4444 99 99 1 2 3 2222 2 0 777 33 777 77777777 3 11111111 0 0 777 33 222222222222222222222222222 0 3 333333333 0 7 77777777777 999 5 444 0 88888888888888 7 88888888 6 99 111111 2 6 33 5 1 6 6 99 6 99 1 4 8 3 666 77 0 1 0000 888 5 4 6 7777 2222222 1 11 3 11 1 9999999999999999999 0 1111 333333333333333333333333333333333333 333 8 1 0 77 2 55555 77 3 1 6 3 0000000000000000 8 333333333333 2 1 22 666666666666666 1
lowQualScore : . ... ..... .... .. .. . . . .... . . ... .. ... ........ . ........ . . ... .. ........................... . . ......... . . ........... ... . ... . .............. . ........ . .. ...... . . .. . . . . .. . .. . . . . ... .. . . .... ... . . . .... ....... . .. . .. . ................... . .... .................................... ... . . . .. . ..... .. . . . . ................ . ............ . . .. ............... .
lowQualScore : 7 777 33333 2222 22 22 0 5 2 0000 5 2 000 88 555 22222222 2 55555555 8 2 555 88 000000000000000000000000000 0 2 555555555 0 0 99999999999 888 0 000 8 00000000000000 8 00000000 7 22 000000 5 7 00 2 5 7 7 22 7 22 7 6 0 2 333 99 1 4 6666 888 0 0 7 0000 4444444 0 00 2 00 0 1111111111111111111 8 8888 555555555555555555555555555555555555 333 9 3 7 77 5 77777 99 0 4 7 3 0000000000000000 0 888888888888 5 0 00 222222222222222 0
consensus : TTAACCCGTGCATGCACCGGTG---GGTATAAGATAATTA----TAT--TGA--ATTTGGACGTAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAGATAGAGAGTAC-T-ATTAT--AT---TAC--GT---TGTATCAT-TAATTACATGGGGAT---TTGTTG--TG----------------A--A--GT---AAATT-TGATGTC-------T-CCAT-AAATT--GAA-T---TTTAT-TAAGCT---ATCCTTTGA-----TA--T----TAAGACCTATC-T-T-AAAT-TA--TCAA-A-TAATCA-AC-GTATCCCTAAACGAAA-TA-AAG--AT-A--GGTTAAATTCGAT-AAATAAATA-ATATATAT--TGATTCAATTCAATTAGA----AATA---GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATTCGACC----CTTT-A-C-C-AATTGATTTANA--TATACAT-NATAATTT-A-G-ATACATGGTAAA--ATTTGAGAATATC--GAGTTCAGAAAT-A-TTTATG--TTTT-TAA----------T---T--GAACTTATTTTTGATTAATTAGACCCATCTTCAAATAATTGGACA-CAACTATA--TAAGTAAT--TANAGATAAA-TT-TGTTNAA----------AAAAAGATAG-CTTCAATTGTA-ATACATG-TATGTAATCTCAAGTNGNNTCAATTTG-----A--TACACANGTAGTATCAAGTGAACTAGGTAT
Reference ( family-533 ) : TTAACCCGTGCATGCACCGGTG---GGTATAAGATAATTA----TAT--TGA--ATTTGGACGTAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAGATAGAGAGTAC-T-ATTAT--AT---TAC--GT---TGTATCAT-TAATTACATGGGGAT---TTGTTG--TG----------------A--A--GT---AAATT-TGATGTC-------T-CCAT-AAATT--GAA-T---TTTAT-TAAGCT---ATCCTTTGA-----TA--T----TAAGACCTATC-T-TAAAAT-TA--TCAA-A-TAATCA-AC-GTATCCCTAAACGAAA-TA-AAG--AT-A--GGTTAAATTCGAT-AAATAAATA-ATATATAT--TGATTCAATTCAATTAGA----AATA---GGTCAA-ATTCCGTTTTGAAATAGGCCCATC-TTTAATAGAATTCGACC----CTTT-A-C-C-AATTGATTTANA--TATACAT-NATAATNT---G-ATACATGGTAAA--ATTTGAGAATATC--GAGTTCAGAAAT-A-TTTATG--TTTT-TAA----------T---T--GAACTTATTTTTGATTAATTAGACCCATCTTCAAATAATTGGACA-CAACTATA--TAAGTAAT--TANAGATAAA-TT-TGTTNAA----------AAAAAGATAG-CTTCAATTGTA-ATACATG-TATGTAATCTCAAGTNGNNTCAATTTG-----A--TACACANGTAGTATCAAGTGAACTAGGTAT
gi|1 : TCAACCCGTACATG----GGTG---GATATAAAATAATTACGTGTATAGTGA--ATTTGGACGTAAAAATCACACAGTGGGGTTTTGAAGCCTTCGTTGAATGAAGATA-----TAT-TTATTAT--ATAAATACCAGTATTTTTATCA---AATC-CATGGGAAT---TTCTTG--TG----------------A--A--AT---AAATT-TGATGTT-------T-CCAT-AGATTTGAAA-T---TTTAT-TTAGCT---ATCCTTTGA-----TA--T----CAAGTCCTATC-T-TTTAAT-TA--TCAA-A-TACTCA-GT-ATATCCCTCAACGAAA-TG-AAG--AT-A--GGTTAAATTCAAT-AAATAAATAGATATATAT--TGCTTCAATTCAATTAAA----AATA---GGTCAA-ATTCCTTTTTGAAATAGACCCATC-TTTAAAAGAATTCGACC----CCTT-A-T-CGAATTGATTTAGA--TATACAC-TATAATGTCA-C-ATACAT-GT-----ATATGAGAATATT--GAGTTTAGAAAT-G-T---TG--T-----------------T---T--GAACTTATCTTTGCTTAATTAAACCCATCTGCAAATAATTGGACA-CAACTATA--TAAGTAAT--TGTAGATAAA-TTGTGTTC----------------AGATAG-CTTCAATTATACATACATG-TATGTAATCTCAAGTAGTATCAATTTAAGTACA--TATACATATAGTATCAAGTGAACTAGATAT
gi|10 : ATGT--TGATTCAATTCAATTAGA----AATA---GGCCAATATTTCATCTCG-AATACGCTCATCTTTTAATAGAATCTGTGC----TTTTAA-C-C-AATTGGTTCAAA--TAgcccaattccatttcaggttttttttaatcaggcccataat
gi|11 : atgaaatagcttgaaaataattttccttaaaGCAAAT-ATTTGAGAATATT--GCGTTCAGAAAT-A-TTT------------------------------GAACTGATCTTTGAATAGTTAGACCCATCTTCAAATAATTAGATA-GAACTATAATTAAGTAAT--TAAAGATAAA-TT-
gi|12 : ataatgttTAAG--TATAAA--AA-TT-TGTTTTA----------AAAAAGATCA-CTTCACCCG-G-ATAC-----ATGTAATCTCAATTTGGTTCAATT---------------AAGTAGTATCAAGTGA
gi|13 : attgatccA-T---TTTAT-TAAGCT---ATATTTTAA-----TG--T----TCGGACCTA--------AAT-TA--TCAA-A-TTATCA-ACCATATCCCTAAATGAAA-TA-AAG--AT-A--GCTTGAATTtt
gi|14 : ATAAATA--TATGTAT--CGATTCAATTCAATTAGA----AATA---GGGCAA-ATTCCATTTTGAAATAGACCTATgaa
gi|15 : TTAACCCGTACACACATCGATATATGATACATG-TAATTA----TAG--TGA--GTGTGGAAGTAAAAATCTGACG-TGGAGTgctcataacatgtaatgatct
gi|16 : aTTAACCCATGCATGCACCAGTG---GGTA--AGATAATTA----TAT--TAA--ATCTATGCATAAAAATCAGACAT
gi|17 : aTTAACCCATGCATGCACCAGTG---GGTA--AGATAATTA----TAT--TAA--ATCTATGCATAAAAATCAGACATc
gi|18 : a-TAT----------T---T--GACCTTATTTTTAGTTAATTAGACCCATCTTCAAAc
gi|2 : taagtggacataaaagatgggaaTTAGCCCATGCATGCATGGGTA---AATGTAGGGTGATTA----TAT--AGAGAATTTGGAAATAAAAATCAGACATTGGAGTTTTGAAGCCTTCGATGAATAAAAATAGAGAGTACGT-ATTAT--AT---CAC--GT---TGTATCAT-TAATTACATGAAGGT---TTGTTG--TGATTGTTTTTTATTTGAA--A--ATGA-AAATT-AGA--TCGAAATAAT-GCAT-AAATT--TTA-TGTCTTCATATAAG-TGAAATAATTTGAAATTTTA--T----CAAG--CTATC--------C-TC--TCAA-ATTAGTGA-AC-GTATCCCCGAGCG-AA-TATAAG--AT-A--GGGT-AATTTGAT-AAATG---A-ATATAAAT--TGATTCTATTCAATTCCA----AATA---TGTCAG-ATTTCGTATTGAAATAGGGCCATA-TTTAATCGAATCTGACCAAATCTTT-------AGTTGATTTAGAGTTATAC-T-AATGATTT---GAAGACAGAGTAAAATATTTGATAATTTC--AAGTTTAGAAATAA-TTTATGGTTTTT-TAAAAAAACATATT---T--GAACTTAGTTTTGATT----------------AAATAATTGAATG-CAAGTACA--TATATAAT-------------TT-TGTTCAA----------ACAAAGATAGTTTTTAATTGT------ATGATAT-CAATTGCAAGTTGGCTCAAT---------------CAAATAGTGTGACGTGAATTAAGTAT
gi|3 : TAGAAAGTGC---ATTATGAAT---TAC--AT----GTA-CATGTGGTTTT-TTGTGATAAGTTGTTGATTG----------------A--ATAGT---AAATG-TGATGTC-------T-CCATTAAATT--GAAAT---GGTAT---AGAT---ATCCTTTGA-----TA--T----TAAGACCCATC-T-TCAAAT-CA--TCA---------A-AC-GTGTCCTTATACGAAA-TA-AAAACAT-A--TGTTAAATTCACT-AAATAAATATATATATACAATGATTCAGCTGAATTATA----TATA-----T--A-ATTCAATTTTAAAATCGGTCCATC-TGTAATAGAATTCGACT----CTCT-ATT-C-AATTGGTCTATA--TAGACAT-GATAAATTGAGG-ATA-ATGCAAAAC-ATTTGGG--TATCCTTAGTTAAGAAAT-ATTTTATG--TTTTGTAATTC-------T---T--GCACTTATTTTTGACTTATTCGACCAATCTTCAAATGATTGGACT-TAACTAT------GTAAT--TACAGATAAA-TTGTGTTGAA----------TACAAGATAG-CTa
gi|4 : cgtatttatagtgATGTC--AAATTCAGA--------TATG--TTCA-AAA----------TATTT--GAACATATTTTTTATCTATTAGACCCATCTCCAAATAAGTGAACA-AAA--GTA--CAAATAATTATAAAGATAAATTT-TGATAAAAAAAAAAAAGAAAAAGATAG-ATTCAATTG-A-ATAC-----ATGTAATCTCAAGTGGTATCAATTTG-----ATTTACACATGT
gi|5 : tacatgtTAGA----AATA---GACCAA-ACTCCGTTTTGAAATAAATACATC-TTTAATAGGACTTGGCC----CTTT-A-CGT-AATTGATATATA--TATAAATATAAAATTT---G----CATGAT--A--ATTTGAGAATAAT--G---CC--AAAT-A-TTCGAGAACTTT-GAG----------T---TTAGAATTTCTTTTT---------GACCAATGTTCAAATACCTGGACACCAACTA-A---AAATAAT--TAGAGATcaaaaataaatat
gi|7 : ATGGGGAT---TTGTCG--TG----------------ATTC--GTTTGAAATTGTGATGTC-------TCCCAT-A---T--G--------TTAT-TATGCT---GTCC-TTGA-----TA--CATTATAAGACCTATA-TATAAAGA-TA--TCAA-A-CAACCACAC----------AACGAAATTA-AAG--ATCACCGGTTAAATTCAATAAAATAAAT--------------ATTCAA------TAGA----AATA---GGTAAA-AT
gi|8 : TTGA-----TAATT----TAGGTCCGAACAT-TAAAATATAGCTTAATA-AAATGA-AT-ATATCC-TAAACAAAA-TA-AAG--AT-A--GTTTACATTCTAT-GA-TACATG--CATATAT--TGATTCAATTCAATTACATACAAGTATAAGGTCAA-ATTCCTTTCTGAAATAGACCCACC-T
gi|9 : TTAACCCGTGTATGCAC----G---GGTATA---TAATT----------TGA--ATTTGAAAGTAAAAATCATACATTGGAGGTTTGAAGCCTT--A-----AAAGGCAGAGAGTAC-C-AGTAT--AT---TAC--AC---TGTGTGA------TACATG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CAGACGTCGGGATTTCAAATGAAGCCTTATTTAAATACAAGTACATCATTATCAATTACATTGGTCTCTTGTGATTTTTTAGTGGAATTTGTATACGGAATATAATACATAAATGTGATGTTTTCATATATAAATGAAATGGTTTTGAAAGTTCAAAATTAATTTATTACGCTATCTTTTAGAATAAGAATGAA
Unaligned ( gi|19 ): ATCAAGTGATTTAGATACCATAAGTCAAATTCTGATACATGTATGTTTAAAT