lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1 2 111 2222 000000000000000000000000000000000000000000000000000 11 44444 222 11 1 2222 222222 1 1 1 1 1 77777777777777 1 44444 44444444444 66666666666666 33 1 222 44444444444 111 444444444444444444 111 444444444 4444444 222 222 22 444 1 11 1 1 1 333 66666 1 1 1111 5555555 1111 1 33 111 55555 33 1
lowQualScore : 5 1 1 666 5 5 4444 5 5 777777777777777777777777777777777777777777777777777 11 22222 1 777 11 0 0000 3 3 555555 7 5 0 3 0 0 2 5 66666666666666 3 00000 88888888888 7 4 33333333333333 66 0 111 99999999999 99 111 2 8 888888888888888888 111 000000000 8888888 222 6 777 22 222 2 44 3 3 7 7 4 0 888 11111 4 66 0 1 0 3 0 999 3 7777 4444444 7777 0 1 22 99 777 66666 2 3 00 0
lowQualScore : . . . ... . . .... . . ................................................... .. ..... . ... .. . .... . . ...... . . . . . . . . .............. . ..... ........... . . .............. .. . ... ........... .. ... . . .................. ... ......... ....... ... . ... .. ... . .. . . . . . . ... ..... . .. . . . . . ... . .... ....... .... . . .. .. ... ..... . . .. .
lowQualScore : 7 4 6 000 0 0 0000 0 0 666666666666666666666666666666666666666666666666666 00 22222 4 000 00 0 2222 0 2 333333 3 5 0 2 0 0 5 3 77777777777777 3 33333 00000000000 3 7 77777777777777 55 0 555 00000000000 22 777 5 0 888888888888888888 888 888888888 8888888 000 5 000 33 000 0 77 3 3 0 3 0 0 333 77777 7 77 7 0 0 2 8 888 2 0000 7777777 0000 0 4 44 22 000 00000 2 2 00 0
consensus : TAATT-ATAT-TTTTCCCGCGTTTCG-T-A-G-TA-ATTAGCG-GGAA-AA---TGT---ATTG----TAC----GAC----ACTG-AACATTGTA----TAAT--ATGGAAT-----GGTCCATTATTAG-CCAATC--GATTACG-AGTAGAA-GAAAACGGGTTTTCGAA--GGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACGAAA-CTTT-----TATGTCA--TTG-AAATATTTGCACCATGTA-A------TG-TATTTACATATATTTNTATA-ACA-CA-AT-TCGTTGTGAGG-TCCGTTC-ACGAACCCCCTGCAGT-----TCAGC--GG---CACCTGGCAACGGACACAGGTTTTNTAGAG-TTTTTCACGATTTT----T---ATCGT--TTT-----TNTCTCTAGTT-TG--TTTTTCCTGG-CCGGCCCTGA-TGCTA-TGTA---AAGGGGAGAGTTTTTTTCAAATGT-CATG-ATTGGAGATATGNT-CTTAATTTATG-TATTGAACTTT-GAGGTATTGTTACGCGTATCGAAGTACAC-GTCATGTTTATCTGCATA-TGTCTA----TGA--TAAT-AATTA----CGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTGTTTA-GT-ATTACAATGGAGGTATA-GG-TAATACTT
Reference ( gi|1 ) : TAATT-ATAT-TTTTACCGCGTTTCG-T-A-G-TA-ATTAGCG-GGAA-A----TG----ATTA----TAC----GG-----ATTGGAAAATTGT-----TAAT--ATGGAAT----TGGTCCATTATTAG-C-AATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACGAAAACTTTG----TATGTCAAGTTG-AAATATTGGTAACATGTA-A------TGTTATTTACATATATTTATATATACA-TA-AT-TCGTTGTGAGGATCCGTTC-ACGA-CCCCCTGCAGT-----TC-GC--GG---CACCTGGCAACGGACACAGGTTTTCTAGAG-TTTT-CACGATTTT----T---ATCGT--TTT-----TAT-TCTAGTT-TG--TTTTTCCT-G-CCGGCCCT-A-TGCTACTGTA--TAAGGGGAGAGTTTTTTTCAAATGT-CATG-ATTTGAGATATGAT-CTTAATTTA-G-TATTGAA-----GAGGTATTGTTATGCATGTTGAAGTACAC-GTCATGTTTATCTGCATA-TGTCTA----TGATATAATGAATTA----CGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAATTGTATGTTAGT--GTT--GTGTTTACGTAATTACAATGAAGGTATATAG-TAATACTT
gi|4 : TGATT-ATATATTTTCCCGCGTTTCG-T-T-GATA-AT-AGTGCGAAA-A----TGTTGTATTA-----AC----GAC----ACTG-AACGTTGTAATATTAAT--ATGGAAT-----GATCCATTATTAG-CCAATC--GATTACG-AATAGGA-GAAA-CATGTTTTCGAAATGTTATTCAGGT-ATTCACTTTTAGCCGCCG-CTCGTCAC-GAAA-TAGACGAAA-CTTT-----TATGTCAA-TTG-AAATATTTGCATCATATA-ACATTCATGTTATTTACATATATTTGTATATACA-CA--T-ACATTTTGAG-ATCCGTTC-ACGA-CCCCCTGC-GT-----TCAGT--GG---CACCTGGCAACGGACACAGGTTCTATAGAGTTTTT-CAGGA-TTT----T---ATCGT--TTT-----ATT-TCTAGTT-TGTTTTTTTCCTGG-CCGACCCTAA-TACTAC-GTA---AAGGGGATA-TTTTTTTCAAATGC-CATG-GCTGGAGATGTGTT-ATTCATTTATG-TATTGAATTTTTTAGGTATTGTTATGTGTATCGAAGTACAC-GTCGTTTTT-CCTGCCTA-TGT-TA----T
gi|5 : aTAATTGATAT-TTTCTCCGGCTTTCT-T-ATG-TA-ATT-GCG-GGAA-AAA--TG-----TTG----TAT----GACGCACACTAAAACATTGT-----AAAT--ATGGAAT----GGTTCAATTATTAG-CCAATC--GATTACG-AGTAGAATGCAAACAGATTTTCGAA--GGTATTCAGGT-ATTCACTTCTAGCCACGG-CTCGTCACAGAGATTAGACGAAACCTTTATCTTTATGTCA--TTG-AAATATTTGTACCATGTA-A------TG-TA-TTACATATATTTATATTAACATTACATGTCGTTGTGAG--TCCGTTC-AC-A-CCCCCTGCA-T-----TCAGC--GGACACATCTG
gi|9 : tgTAATT-ATAT-TTTC-CCGC-TTTCG-TTA-G-TA-AT-AGCG-GGAA-AA---TGT---ATTG-----AC----GAC----ACTG-AACATTGT------AAT--ATGGAAT-----GGTTCATTATTAG-CCAATC--GATTACG-AGTAGAT-GAAAACAGAT
gi|8 : gTATTT-ATATATTTTCCTGCGTTTCA-TTA-G-TA-AT-AGCA-GGGA-A----AG----GTTG----TACTTTCGGC----ACTG-AAGATTGT------AAT--AGGGAAT-----GGTCCATTATTAACC-AATC--GATTAgtgtccgctgaat
gi|2 : aATC-ATAT-TTTC-CCGCGTTTCGAT-A-G-TA---TAACG-GGAA-AATGCTGT---ATTAACTGTGT----GT-----ATTTGAAA-TGGTA----TAGTCTATGCAGTGGCATGATCCATTCATGG-G-AGTCAGGATTGCTTAGTA-------AATGGGTTTT-------GT---CAAGGTATTCACTTCTAGCCGCCGTCTCG-CTC-GGGT-TAAAC--AAATTTT-----CAT------TTATAAATATT-----TATGTATA------TCATGTTTGTAAGTATTTTTGGA--------AT-T--TTGTGAGG-TCCGTTC-ACAAACTCCCTACA-T-----CCAGC--GG---CATCTGGCAACGGACACAGGTTTTCTAGAG-TTTT-T-C-ATTTG----CGAAATCG---TTT-----TATCTGTAGT------TTTTTCCTGG-CCGGC-------GCTGATGTATTTTCGGGGAGAATTATT-----ATGTGCATATATATG---TATGTTGCTTAGTTttgttcacttctagccgccggccgtcaagagatagacgaaa
gi|3 : ATT-ATAT-TTCTA--GCGTTTCG-T-A-T-TACAATGGCG-GGAA-A----gctacattttcatgctatacagttttctgttgaaaaaattatcagctgtttgtgtaattataattgtacggttggctgtcgagcaatatattagtatattgatcattttgtaaggagcaagg
gi|21 : ATT-ATAT-TTTT-CCGCGTTTCGTT-A-G-TA-A-TAGCG-GGAA-A----atgtatttactgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaattgtaagtacatttggtattttgtgaggtccgttccacaaactccctacagcggcactggccaggcacctggcaacggacacagattttctagagtttttaattttcgaatatcatcgttttatctctagttgtgttttcctgacgggctctgatgtattaattatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagataaatcccggcgtcctgcacgttcggttgactgtcgggcaatatattagtatattgatcattttgtagggagcaagg
gi|12 : TTTCCCGCGTTTCGAT-A-G-TA---TAGCG-GGGACA----TGT---ATT-----TAC----atgtatt
gi|8 : taTTGTTCACTTCTAGCCGCCG-GCCGTCAA-GAGA-TAGACGAAAtgtgtgtatttgaaatggtatagtctctgcagtgacatgatccattcatgggggctccggtattgaccaatagaattgcttag
gi|3 : atatttatatattttcctgcgtttcattagtaatagcagggaaaggttgtactttcggcactgaagattgtaatagggaatggtccattattaaccaatcgattaTTGTGAGG-TCCGTTCCACAAACTCCCTACAGCGGCACTG-GCCAGG---CACCTGGCAACGGACACAGATTTTCTAGAG-TTTT-TA--ATTTTCGAAT---ATCATCGTTT-----TATCTCTAGTTGTG---TTTTCCT-GACGGGCTCTGA-TG
gi|20 : attatatttctagcgtttcgtattacaatggcgggaaaatgtatttactgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaattgtaagtacatttggtatt-GC--GG---CACCTGTCAACGGACACAGGTTTTtattaattatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagataaatcccggcgtcctgcacgttcggttgactgtcgggcaatatattagtatattgatcattttgtagggagcaagg
gi|7 : cca-GC--AG---CACTTGACAACGGTCACATATTTCGTGGAG-TTTTTCATTAGTGAA---T---ATCAT--TTTATACATGTATCTAGT---GA-TTTTTCCT-G-agaaatattttatc
gi|6 : agttaagcgaacttttatatcaatggatatataattatgtttgttgaatgtttgtattttgtgaacttcgtagcaaactcagtaccaccaAGAG-TTTTTCACGATTTT----T---ATCGT--TTT-----ATT-TCTAGTT-T-----TTTCCT-GGCCGGCCCT-AATGCTA-TGTA---AAGGGGAGAGTTTT-TTCAAATGT-CATG-ATTGGAGATATGAT-CTTAATTTATG-TATTGAA-----GAGGTATTGTTTCGCGTGTCGAAGTACAC-GTCATGTTTATCTGCATT-TGTCTA----TGA-------AATTA----CGGGCGTTCAGCAATCACGGCTGGCTGTCGGACAA-TGTATGTTAGT--GT----TGTTTA-GT-ATTACAATGGAGGTATA-GG-TAATACTactagctcaggttctttgtcatgtttggtgtgcaggaatagtgtatgtatgtatgcatgatgtcgagttattacaatgtatcttttcatgc
gi|11 : GAT-CTTAATTTA-TCTATTGAGCTTT-GAAGTAATGTTAAGTGGATTGGAGTAAGC-GTCATGTTTTTCTGCATATTGTCTA----Tgaagt
gi|15 : TACATTGTCATG-----CTACA----GTTTACTGTTGAAATAATCAATTAATTTCGG-CGTCCTGCACGTACGGTTGGCTGttttaatcaggcgatgtatgttagcgttgtgtgtggtatgggttatac
gi|18 : gctgagttgcTATCTGCATA-TGTCTA----TAA--------ATTA----CGGGCGTCCAACAATCATGGCTGGCTGTCAGGCAAT
gi|14 : TAATGAATTA----CAGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGTTAATTAAGTGTTTTAGT-ATTACAATGGAGGTATA-GG-TAATACT
gi|3 : ATAAATCC----CGG-CGTCCTGCACGTTCGGTTGACTGTCGGGCAA---TATATTAGT--ATg
gi|16 : attatatttctagcgtttcgtattacaatggcgggaaaatgtatttactgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaattgtaagtacatttggtattttgtgaggtccgttccacaaactccctacagcggcactggccaggcacctggcaacggacacagattttctagagtttttaattttcgaatatcatcgttttatctctagttgtgttttcctgacgggctctgatgtattaattatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagGCAATCACGACTGGTTGTCACGCAA-TGTATGTTAGC--GTT--GTATTT-TGT-ACTACAGTGGCGG--TATAGTTAATGCTattgatcattttgtagggagcaagg
gi|2 : ACGGTTGGCTGTCGAGCAA---TATATTAGT--ATgatc
gi|19 : atcatattttcccgcgtttcgatagtataacgggaaaatgctgtattaactgtgtgtatttgaaatggtatagtctatgcagtggcatgatccattcatgggagtcaggattgcttagtaaatgggttttgtcaaggtattcacttctagccgccgtctcgctcgggttaaacaaattttcatttataaatatttatgtatatcatgtttgtaagtatttttggaattttgtgaggtccgttcacaaactccctacatccagcggcatctggcaacggacacaggttttctagagtttttcatttgcgaaatcgttttatctgtagttttttcctggccggcgctgatgtattttcggggagaattattatgtgcatatatatgtatgttgcttagttgctacattttcatgctatacagttttctgttgaaaaaattatcagctgtttgtgtaattataattgtTATGTTAGT--GTT--GTGTTTA-GT-ATTACAATGAAGGTATA-GG-TAATACTTattgatcattttgtaaggagcaagg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TATATTTTCTAGCGTTTCGATACAATGGCGGGAAAATGTATTTACTGTGTATATTTGAAACGATATAGCTATTCTGTATCACGATCCATTCGTGAAATTCAGGTATTGACCAATGTAATTGCTTAACAAG
Unaligned ( gi|13 ): TAATTCCCCGCGTTTCGATAGAATAGTGGCACAATGTGTTTACTGTATGTATTTAAAATGGTGTAACCTATGTAGTGGCATTATCTATTCAGGTATTGTCCTGGCAATAGATTTGCAG
Unaligned ( gi|17 ): GAGTTTTTAAGTCTTGGTTCTTTTGACATATTCAACTTCTATTCGCCGTCCCACATGGTTTAAACGA
Alignments
lowQualScore : 2222222222222 11111111 3333333333333333 11 333333333333333333 11111 22 1 222222 11 1111 444444444444 66666666666666666 11 222222 22222222 111 222222222222222222 111 1111111 22222222 11 1 1 1 33333 44444444
lowQualScore : 4 8 9 0 0000000000000 666 55555555 3333333333333333 5 33 111111111111111111 5 5 5 2 99 8 66666 2 2 77 3 5 8 0 8 6 6 333333 8 3 8 11 0 0 6666 555555555555 0 3 1 1 55555555555555555 1 6 6 6 77 000000 0 00000000 000 1 5 666666666666666666 666 6666666 7 55555555 3 6 6 2 88 6 22 0 0 0 2 1 8 3 88888 4 6 8 55555555 88 66 99 6 6 6 8
lowQualScore : . . . . ............. ... ........ ................ . .. .................. . . . . .. . ..... . . .. . . . . . . . ...... . . . .. . . .... ............ . . . . ................. . . . . .. ...... . ........ ... . . .................. ... ....... . ........ . . . . .. . .. . . . . . . . ..... . . . ........ .. .. .. . . . .
lowQualScore : 4 9 3 5 7777777777777 444 99999999 6666666666666666 0 88 000000000000000000 0 7 7 5 22 0 22222 8 5 55 2 4 0 8 0 7 7 000000 0 2 0 00 8 8 8888 888888888888 8 2 0 0 44444444444444444 0 7 7 7 77 000000 1 77777777 000 0 7 333333333333333333 555 8888888 8 55555555 7 7 7 5 88 5 55 0 0 0 5 0 0 2 00000 2 0 0 00000000 22 99 22 7 7 7 0
consensus : TAATT-ATAT-TTTTCCCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAAA---TG----T---ATT----GTACG-AC----ACTG-AA-NATTGTA----TAA--T-------ATGGAAT-GGTCCA-TT-ATTAGCCAATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACG-AAAC------TTT-TATGTC-A--TTGAAATATTTGTATCATGTA------AT-GTTATTTACATATATTTGTA-TATAC---ACAATTCGTTGTGAGG-TCCGTTC-A-CGAACCCCCTGCAGT----TCAGC--------GG---CACCTGGCAACGGACACAGGTTTTNTAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT-----TATCTCTAGTTTG--T-TTTTCCTGGCCGGCCCTGATGCTA-TGTA-AAGGGGAGAGTTTTTTTCAAATGT-CATG-AT-TGGAGATATGAT-CTTAATTTATGTATTGAA-CTTTGAGGTATTGTTACGCGTGTCGAAGTACACGTCATGTTTATCTGCATA-TGTCTATG--ATAATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACTT
Reference ( family-522 ) : TAATT-ATAT-TTTTCCCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAAA---TG----T---ATT----GTACG-AC----ACTG-AA-CATTGTA----TAA--T-------ATGGAAT-GGTCCA-TT-ATTAGCCAATC--GATTACG-AGTAGAA-GAAAACGGGTTTTCGAA--GGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACG-AAAC------TTT-TATGTC-A--TTGAAATATTTGCACCATGTA------AT-G-TATTTACATATATTTNTA-TA-AC---ACAATTCGTTGTGAGG-TCCGTTC-A-CGAACCCCCTGCAGT----TCAGC--------GG---CACCTGGCAACGGACACAGGTTTTNTAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT-----TNTCTCTAGTTTG--T-TTTTCCTGGCCGGCCCTGATGCTA-TGTA-AAGGGGAGAGTTTTTTTCAAATGT-CATG-AT-TGGAGATATGNT-CTTAATTTATGTATTGAA-CTTTGAGGTATTGTTACGCGTATCGAAGTACACGTCATGTTTATCTGCATA-TGTCTATG--ATAAT-AATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACTT
gi|1 : TAATT-ATAT-TTTTACCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAA----TG--------ATT----ATACG-G-----ATTGGAA-AATTGT-----TAA--T-------ATGGAATTGGTCCA-TT-ATTAGC-AATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACGAAAAC------TTTGTATGTC-AAGTTGAAATATTGGTAACATGTA------AT-GTTATTTACATATATTTATA-TATAC---ATAATTCGTTGTGAGGATCCGTTC-A-CG-ACCCCCTGCAGT----TC-GC--------GG---CACCTGGCAACGGACACAGGTTTTCTAGA-G-TTTTCACGATTT-T----T-----ATCGT--TTT-----TAT-TCTAGTTTG--T-TTTTCCT-GCCGGCCCT-ATGCTACTGTATAAGGGGAGAGTTTTTTTCAAATGT-CATG-AT-TTGAGATATGAT-CTTAATTTA-GTATTGAA-----GAGGTATTGTTATGCATGTTGAAGTACACGTCATGTTTATCTGCATA-TGTCTATGATATAATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAATTGTATGTTAGT--GTT--GTG-TTTACGTAATTACAATGAAGGTATATAGTAATACTT
gi|10 : T-ATAT-TTT-CTAGCGTTTCGAT-A---CA-AT-GGCGGGAAAA---TG----T---ATT-----TAC
gi|11 : GAT-CTTAATTTATCTATTGAG-CTTTGAAGTAATGTTAAGTGGATTGGAGTAAGCGTCATGTTTTTCTGCATATTGTCTATtgtgtatatttgaaacgatatagctattctgtatcacgatccattcgtgaaattcaggtattgaccaatgtaattgcttaacaag
gi|11 : TCAGGCGA-TGTATGTTAGC--GTT--GTG-TGTG-GT-ATttttaatcaggcgatgtatgttagcgttgtgtgtggtatgggttatac
gi|12 : gatcttaatttatctattgagctttgaagtaatgttaagtggattggagtaagcgtcatgtttttctgcatattgtctatttttaaTTTCCCGCGTTTCGAT-A-G-TA---TAGCGGGGACA---TG----T---ATT-----------T----ACTG-------TGTG----T-A--T-------TTGAAAT-GGTgggttatac
gi|13 : taTTCCCCGCGTTTCGAT-A-G--A-A-TAGTGGCACAA---TGTGTTT---ACT----GTATG--T----ATTT-AA-AATGGTG----TAACCT-------ATGTAGT-GG--CA-TT-ATatagtctctgcagtgacatgatccattcatgggggctccggtattgaccaatagaattgcttag
gi|14 : taaTAATGAATTACAGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGTTAATTAAGTGTTTTA-GT-ATTACAATGGAGGTATA-GGTAATACTctattcaggtattgtcctggcaatagatttgcag
gi|16 : GCAATCACGACTGGTTGTCACGCAA-TGTATGTTAGC--GTT--GTA-TTTT-GT-ACTACAGTGGCGGTATA-GTTAATGCTg
gi|18 : TATCTGCATA-TGTCTATA--A------ATTACGGGCGTCCAACAATCATGGCTGGCTGTCAGGCAA-Tgatc
gi|19 : TATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGAAGGTATA-GGTAATACTT
gi|2 : ATC-ATAT-TTT-CCCGCGTTTCGAT-A-G-TA---TAACGGGAAAA---TGCTG-T---ATTAACTGTGTGTAT-----TTG-AA--ATGGTA----TAG--TCTATGCAGTGGCAT-GATCCA-TTCATGGG--AGTCAGGATTGCTTAGTA-------AATGGGTTTT-------GT---CAAGGTATTCACTTCTAGCCGCCGTCTCG-CTC-GGGT-TAAAC--AAAT------TTT-CAT-TT-A--T--AAATATTT-----ATGTAT-----ATCA-TGTTTGTAAGTATTTTTG-GA-A--------TT--TTGTGAGG-TCCGTTC-A-CAAACTCCCTACA-T----CCAGC--------GG---CATCTGGCAACGGACACAGGTTTTCTAGA-GTTTTTCA-----T-T----TGCGAAATCG---TTT-----TATCTGTAGT-----T-TTTTCCTGGCCGGCGCTGATG-TA-TTT--TCGGGGAGAATTATT-----ATGTGCATATATATG----TATGTTGCTTAGTTatat
gi|2 : ACGGTTGGCTGTCGAGCAA---TATATTAGT--ATgctacattttcatgctatacagttttctgttgaaaaaattatcagctgtttgtgtaattataattgtacggttggctgtcgagcaatatattagtatattgatcattttgtaaggagcaagg
gi|20 : atcatattttcccgcgtttcgatagtataacgggaaaatgctgtattaactgtgtgtatttgaaatggtatagtctatgcagtggcatgatccattcatgggagtcaggattgcttagtaaatgggttttgtcaaggtattcacttctagccgccgtctcgctcgggttaaacaaattttcatttataaatatttatgtatatcatgtttgtaagtatttttggaattttgtgaggtccgttcacaaactccctacatccagcggcatctggcaacggacacaggttttctagagtttttcatttgcgaaatcgttttatctgtagttttttcctggccggcgctgatgtattttcggggagaattattatgtgcatatatatgtatgttgcttagttgctacattttcatgctatacagttttctgttgaaaaaattatcagctgtttgtgtaattataattgtCAGC--------GG---CACCTGTCAACGGACACAGGTTTTAGAAATATTTTattgatcattttgtaaggagcaagg
gi|21 : cATT-ATAT-TTTTCC-GCGTTTCGTT-A-G-TA-A-TAGCGGGAAAA---TG----T---ATT----atc
gi|3 : ATT-ATAT-TT--CTAGCGTTTCG-T-A-T-TACAATGGCGGGAAAA---TG----T---ATT-----TAC
gi|3 : TTGTGAGG-TCCGTTCCA-CAAACTCCCTACAG------CGGCACTGGCCAGG---CACCTGGCAACGGACACAGATTTTCTAGA-GTTTTT---AATTT-TCGAAT-----ATCATCGTTT-----TATCTCTAG-TTG--TGTTTTCCTGACGGGCTCTGATG-TA-T-TA-Atgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaattgtaagtacatttggtattttgtgaggtccgttccacaaactccctacagcggcactggccaggcacctggcaacggacacagattttctagagtttttaattttcgaatatcatcgttttatctctagttgtgttttcctgacgggctctgatgtattaattatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagataaatcccggcgtcctgcacgttcggttgactgtcgggcaatatattagtatattgatcattttgtagggagcaagg
gi|3 : attatatttctagcgtttcgtattacaatggcgggaaaatgtatttactgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaattgtaagtacatttggtattAT-AAATCCCGGCGTCCTGCACGTTCGGTTGACTGTCGGGCAA---TATATTAGT--ATttatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagataaatcccggcgtcctgcacgttcggttgactgtcgggcaatatattagtatattgatcattttgtagggagcaagg
gi|4 : attatatttctagcgtttcgtattacaatggcgggaaaatgtatttactgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaattgtaagtacatttggtattttgtgaggtccgttccacaaactccctacagcggcactggccaggcacctggcaacggacacagattttctagagtttttaattttcgaatatcatcgttttatctctagttgtgttttcctgacgggctctgatgtattaattatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagTGATT-ATATATTTTCCCGCGTTTCG-T-T-GATA-AT-AGTGCGAAAA---TG----TTGTATT----A-ACG-AC----ACTG-AA-CGTTGTAATATTAA--T-------ATGGAAT-GATCCA-TT-ATTAGCCAATC--GATTACG-AATAGGA-G-AAACATGTTTTCGAAATGTTATTCAGG-TATTCACTTTTAGCCGCCG-CTCGTCAC-GAAA-TAGACG-AAAC------TTT-TATGTCAA--TTGAAATATTTGCATCATATAACATTCAT-GTTATTTACATATATTTGTA-TATAC---AC-ATACATTTTGAGA-TCCGTTC-A-CG-ACCCCCTGC-GT----TCAGT--------GG---CACCTGGCAACGGACACAGGTTCTATAGA-GTTTTTCAGGA-TT-T----T-----ATCG---TTT-----TATTTCTAGTTTGTTT-TTTTCCTGGCCGACCCTAATACTA-CGTA-AAGGGGATA-TTTTTTTCAAATGC-CATG-GC-TGGAGATGTGTT-ATTCATTTATGTATTGAATTTTTTAGGTATTGTTATGTGTATCGAAGTACACGTCGTTTTT-CCTGCCTA-TGT-TATattgatcattttgtagggagcaagg
gi|5 : aTAATTGATAT-TTTCTCCGGCTTTCT-T-ATG-TA-ATT-GCGGGAAAA----A----T---GTT----GTATG-ACGCACACTA-AAACATTGTA-----AA--T-------ATGGAAT-GGTTCAATT-ATTAGCCAATC--GATTACG-AGTAGAATGCAAACAGATTTTCGAA--GGTATTCAGG-TATTCACTTCTAGCCACGG-CTCGTCACAGAGATTAGACG-AAACCTTTATCTT-TATGTC-A--TTGAAATATTTGTACCATGTA------AT-G-TA-TTACATATATTTATATTA-ACATTACATGTCGTTGTGA-G-TCCGTTC-A-C--ACCCCCTGCA-T----TCAGC--------GGACACATCTG
gi|6 : tgAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT------ATTTCTAGTTT------TTTCCTGGCCGGCCCTAATGCTA-TGTA-AAGGGGAGAGTTTTTT-CAAATGT-CATG-AT-TGGAGATATGAT-CTTAATTTATGTATTGAA-----GAGGTATTGTTTCGCGTGTCGAAGTACACGTCATGTTTATCTGCATT-TGTCTATG--A-----AATTACGGGCGTTCAGCAATCACGGCTGGCTGTCGGACAA-TGTATGTTAGT--GT----TG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACT
gi|7 : AGT-TAAGCG-AA-C------TTT-TATATC-A--ATGGA-TATATA-ATTATGT--------T---TGTTGA---ATGTTTGTA-T------------T--TTGTGAAC-TTCGT---AGCAAACTC-----AGTACCACCAGC--------AG---CACTTGACAACGGTCACATATTTCGTGGA-GTTTTTCATTAGTGAA----T-----ATCAT--TTTATACATGTATCTAG--TGA-T-TTTTCCTGACTAGCTCAGGTTCTT-TGTgaagt
gi|8 : TATTT-ATATATTTTCCTGCGTTTCA-TTA-G-TA-AT-AGCAGGGAAAGGTTG----T---ACT----TT-CG-GC----ACTG-AA-GATTGTA------A--T-------AGGGAAT-GGTCCA-TT-ATTAACCAATC--GATTAcatgtttggtgtgcaggaatagtgtatgtatgtatgcatgatgtcgagttattacaatgtatcttttcatgc
gi|8 : aTTGTTCACTTCTAGCCGCCG-GCCGTCAA-GAGA-TAGACG-AAAttgttcacttctagccgccggccgtcaagagatagacgaaa
gi|9 : atatttatatattttcctgcgtttcattagtaatagcagggaaaggttgtactttcggcactgaagattgtaatagggaatggtccattattaaccaatcgattaTAATT-ATAT-TTT-CCCGC-TTTCG-TTA-G-TA-AT-AGCGGGAAAA---TG----T---ATT----G-ACG-AC----ACTG-AA-CATTGTA------A--T-------ATGGAAT-GGTTCA-TT-ATTAGCCAATC--GATTACG-AGTAGAT-GAAAACAGAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GCTGAGTTGCTACATTGTCATGCTACAGTTTACTGTTGAAATAATCAATTAATTTCGGCGTCCTGCACGTACGGTTGGCTG
Unaligned ( gi|17 ): GAGTTTTTAAGTCTTGGTTCTTTTGACATATTCAACTTCTATTCGCCGTCCCACATGGTTTAAACGA
Alignments
lowQualScore : 2222222222222 11111111 22222222222 11111 3333333333 11 1 11 1 1 222222 11 22222222 77777777777777777777777 222222 22222222 111 222222222222222222 111 11111 22222222 33333 333333333
lowQualScore : 4 8 9 0 0000000000000 666 00000000 66666666666 44444 5 2222222222 66 5 5 5 6 0 8 11 5 8 33 0 3 33 0 0 8 0 8 6 6 8 333333 3 99 0 0 3 3 44444444 0 44 5 88888888888888888888888 1 6 6 6 99 000000 0 00000000 000 1 5 666666666666666666 666 66666 7 55555555 3 6 6 2 88 6 7 3 88888 4 6 8 000000000 5 77 99 6 6 6 8
lowQualScore : . . . . ............. ... ........ ........... ..... . .......... .. . . . . . . .. . . .. . . .. . . . . . . . . ...... . .. . . . . ........ . .. . ....................... . . . . .. ...... . ........ ... . . .................. ... ..... . ........ . . . . .. . . . ..... . . . ......... . .. .. . . . .
lowQualScore : 4 9 3 5 7777777777777 444 99999999 88888888888 88888 0 8888888888 99 0 7 7 7 8 0 88 6 0 88 0 2 88 0 6 0 8 0 7 7 0 000000 2 00 8 8 8 2 44444444 8 66 0 77777777777777777777777 0 7 7 7 55 000000 1 77777777 000 0 7 333333333333333333 555 77777 8 55555555 7 7 7 5 88 5 3 2 00000 2 0 0 111111111 7 99 22 7 7 7 0
consensus : TAATT-ATAT-TTTTCCCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAAA---TG----T---ATTGTACGAC----ACTG-AAA-AT-TGTA----T---AA--TATGGAA-TGGTCCA-T-TATTAGC-CAATCGATTACGAGTAGGA-GAAAACAGG-TT--TTCG-AAATGG--TAT-TCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGAT-AGACG-AAACTTT-TA------TGTCAA-TTGAAATATTTGTATCATGTAA------TGTTATTTACATATATTTGTATATACACA----AT-TCG-----TTGTGAGG-TCCGTTC-A-CGAACCCCCTGCAGT----TCAGC--------GG---CACCTGGCAACGGACACAGGTTTTNTAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT-----TATCTCTAGTTTG--T-TTTTCCTGGCCGGCCCTGATGCTA-TGTA-AAGGGGAGAGTTTTTTTCAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-CTTTGAGGTATTGTTACGCGTGTCGAAGTACACGTCATGTTTATCTGCATA-TGTCTATG--AT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACTT
Reference ( family-522 ) : TAATT-ATAT-TTTTCCCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAAA---TG----T---ATTGTACGAC----ACTG-AAN-AT-TGTA----T---AA--TATGGAA-TGGTCCA-T-TATTAGC-CAATCGATTACGAGTAGGA-GAAAACAGG-TT--TTCG-AAATGG--TAT-TCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGAT-AGACG-AAACTTT-TA------TGTCA--TTGAAATATTTGTATCATGTAA------TGTTATTTACATATATTTGTATATACACA----AT-TCG-----TTGTGAGG-TCCGTTC-A-CGAACCCCCTGCAGT----TCAGC--------GG---CACCTGGCAACGGACACAGGTTTTNTAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT-----TATCTCTAGTTTG--T-TTTTCCTGGCCGGCCCTGATGCTA-TGTA-AAGGGGAGAGTTTTTTTCAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-CTTTGAGGTATTGTTACGCGTGTCGAAGTACACGTCATGTTTATCTGCATA-TGTCTATG--AT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACTT
gi|1 : TAATT-ATAT-TTTTACCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAA----TG--------ATTATACGG-----ATTGGAAA-AT-TGT-----T---AA--TATGGAATTGGTCCA-T-TATTAG--CAATCGATTACGAGTAGGA-GAAAACAGG-TT--TTCG-AAATGG--TAT-TCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGAT-AGACGAAAACTTTGTA------TGTCAAGTTGAAATATTGGTAACATGTAA------TGTTATTTACATATATTTATATATACATA----AT-TCG-----TTGTGAGGATCCGTTC-A-CG-ACCCCCTGCAGT----TC-GC--------GG---CACCTGGCAACGGACACAGGTTTTCTAGA-G-TTTTCACGATTT-T----T-----ATCGT--TTT-----TAT-TCTAGTTTG--T-TTTTCCT-GCCGGCCCT-ATGCTACTGTATAAGGGGAGAGTTTTTTTCAAATGTCATGATTTGAGATATGATCTTAATTTA-GTATTGAA-----GAGGTATTGTTATGCATGTTGAAGTACACGTCATGTTTATCTGCATA-TGTCTATGATAT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAATTGTATGTTAGT--GTT--GTG-TTTACGTAATTACAATGAAGGTATATAGTAATACTT
gi|10 : T-ATAT-TTT-CTAGCGTTTCGAT-A---CA-AT-GGCGGGAAAA---TG----T---ATT-TAC
gi|11 : GATCTTAATTTATCTATTGAG-CTTTGAAGTAATGTTAAGTGGATTGGAGTAAGCGTCATGTTTTTCTGCATATTGTCTATtgtgtatatttgaaacgatatagctattctgtatcacgatccattcgtgaaattcaggtattgaccaatgtaattgcttaacaag
gi|11 : TCAGGCGA-TGTATGTTAGC--GTT--GTG-TGTG-GT-ATttttaatcaggcgatgtatgttagcgttgtgtgtggtatgggttatac
gi|12 : gatcttaatttatctattgagctttgaagtaatgttaagtggattggagtaagcgtcatgtttttctgcatattgtctatttttaaTTTCCCGCGTTTCGAT-A-G-TA---TAGCGGGGACA---TG----T---ATT------T----ACTG--------TGTG----T----A--TTTGAAA-TGGTgggttatac
gi|13 : taTTCCCCGCGTTTCGAT-A-G--A-A-TAGTGGCACAA---TGTGTTT---ACTGTATG-T----ATTT-AAA-AT-GGTG----T---AACCTATGTAG-TGG--CA-T-TATatagtctctgcagtgacatgatccattcatgggggctccggtattgaccaatagaattgcttag
gi|14 : taaT-AATGAATTACAGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGTTAATTAAGTGTTTTA-GT-ATTACAATGGAGGTATA-GGTAATACTctattcaggtattgtcctggcaatagatttgcag
gi|15 : ATA--ATCAATTAATTTCGG-CGTCCTGCACGTACGGTTGGCTGg
gi|16 : gctgagttgctacattgtcatgctacagtttactgttgaaGCAATCACGACTGGTTGTCACGCAA-TGTATGTTAGC--GTT--GTA-TTTT-GT-ACTACAGTGGCGGTATA-GTTAATGCT
gi|18 : TATCTGCATA-TGTCTATA--A-------ATTACGGGCGTCCAACAATCATGGCTGGCTGTCAGGCAA-Tgatc
gi|19 : TATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGAAGGTATA-GGTAATACTT
gi|2 : ATC-ATAT-TTT-CCCGCGTTTCGAT-A-G-TA---TAACGGGAAAA---TG----C-----TGTATTA-----ACTG------TGTGTA----TTTGAA---ATGGTA-TAGTCTA-TGCAGTGGCATGATCCATT-CA--TGGGA-GT---CAGGATTGCTTAGTAAATGGGTTTTGTCAAGGTATTCACTTCTAGCCGCCGTCTCG-CTC-GGGTT-AAAC--AAATTTT-CA------T-TTA--T--AAATATTTATGT-ATATCA------TGTT-TGTAAGTATTTTTGGA------------AT-T-------TTGTGAGG-TCCGTTC-A-CAAACTCCCTACA-T----CCAGC--------GG---CATCTGGCAACGGACACAGGTTTTCTAGA-GTTTTTCA-----T-T----TGCGAAATCG---TTT-----TATCTGTAGT-----T-TTTTCCTGGCCGGCGCTGATG-TA-TTT--TCGGGGAGAATTATTatat
gi|2 : ACGGTTGGCTGTCGAGCAA---TATATTAGT--ATatgtgcatatatatgtatgttgcttagttgctacattttcatgctatacagttttctgttgaaaaaattatcagctgtttgtgtaattataattgtacggttggctgtcgagcaatatattagtatattgatcattttgtaaggagcaagg
gi|20 : atcatattttcccgcgtttcgatagtataacgggaaaatgctgtattaactgtgtgtatttgaaatggtatagtctatgcagtggcatgatccattcatgggagtcaggattgcttagtaaatgggttttgtcaaggtattcacttctagccgccgtctcgctcgggttaaacaaattttcatttataaatatttatgtatatcatgtttgtaagtatttttggaattttgtgaggtccgttcacaaactccctacatccagcggcatctggcaacggacacaggttttctagagtttttcatttgcgaaatcgttttatctgtagttttttcctggccggcgctgatgtattttcggggagaattattatgtgcatatatatgtatgttgcttagttgctacattttcatgctatacagttttctgttgaaaaaattatcagctgtttgtgtaattataattgtCAGC--------GG---CACCTGTCAACGGACACAGGTTTTAGAAATATTTTattgatcattttgtaaggagcaagg
gi|21 : cATT-ATAT-TTTTCC-GCGTTTCGTT-A-G-TA-A-TAGCGGGAAAA---TG----T---ATTatc
gi|3 : ATT-ATAT-TT--CTAGCGTTTCG-T-A-T-TACAATGGCGGGAAAA---TG----T---ATT-TAC
gi|3 : TTGTAAGTACA-------T-TTGGTATTTTGTGAGG-TCCGTTCCA-CAAACTCCCTACAG------CGGCACTGGCCAGG---CACCTGGCAACGGACACAGATTTTCTAGA-GTTTTT---AATTT-TCGAAT-----ATCATCGTTT-----TATCTCTAG-TTG--TGTTTTCCTGACGGGCTCTGATG-TA-T-TA-Atgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaattgtaagtacatttggtattttgtgaggtccgttccacaaactccctacagcggcactggccaggcacctggcaacggacacagattttctagagtttttaattttcgaatatcatcgttttatctctagttgtgttttcctgacgggctctgatgtattaattatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagataaatcccggcgtcctgcacgttcggttgactgtcgggcaatatattagtatattgatcattttgtagggagcaagg
gi|4 : attatatttctagcgtttcgtattacaatggcgggaaaatgtatttactgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaaTGATT-ATATATTTTCCCGCGTTTCG-T-T-GATA-AT-AGTGCGAAAA---TG----TTGTATTA-ACGAC----ACTG-AAC-GT-TGTAATATT---AA--TATGGAA-TGATCCA-T-TATTAGC-CAATCGATTACGAATAGGA-GAAA-CATG-TT--TTCG-AAATGT--TAT-TCAGGT-ATTCACTTTTAGCCGCCG-CTCGTCAC-GAAAT-AGACG-AAACTTT-TA------TGTCAA-TTGAAATATTTGCATCATATAACATTCATGTTATTTACATATATTTGTATATACACA-----T-ACA-----TTTTGAGA-TCCGTTC-A-CGA-CCCCCTGC-GT----TCAGT--------GG---CACCTGGCAACGGACACAGGTTCTATAGA-GTTTTTCAGGA-TT-T----T-----ATCG---TTT-----TATTTCTAGTTTGTTT-TTTTCCTGGCCGACCCTAATACTA-CGTA-AAGGGGATA-TTTTTTTCAAATGCCATGGCTGGAGATGTGTTATTCATTTATGTATTGAATTTTTTAGGTATTGTTATGTGTATCGAAGTACACGTCGTTTTT-CCTGCCTA-TGT-TATttatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagataaatcccggcgtcctgcacgttcggttgactgtcgggcaatatattagtatattgatcattttgtagggagcaagg
gi|5 : aTAATTGATAT-TTTCTCCGGCTTTCT-T-ATG-TA-ATT-GCGGGAAAA----A----T---GTTGTATGACGCACACTA-AAACAT-TGTA--------AA--TATGGAA-TGGTTCAAT-TATTAGC-CAATCGATTACGAGTAGAATGCAAACAGA-TT--TTCG-AA--GG--TAT-TCAGGT-ATTCACTTCTAGCCACGG-CTCGTCACAGAGATTAGACG-AAACCTT-TATCTTTATGTCA--TTGAAATATTTGTACCATGTAA------TG-TA-TTACATATATTTATAT-TA-ACATTACATGTCG-----TTGTGA-G-TCCGTTC-A-C--ACCCCCTGCA-T----TCAGC--------GGACACATCTG
gi|6 : tgAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT------ATTTCTAGTTT------TTTCCTGGCCGGCCCTAATGCTA-TGTA-AAGGGGAGAGTTTTTT-CAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-----GAGGTATTGTTTCGCGTGTCGAAGTACACGTCATGTTTATCTGCATT-TGTCTATG--A------AATTACGGGCGTTCAGCAATCACGGCTGGCTGTCGGACAA-TGTATGTTAGT--GT----TG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACT
gi|7 : AGTT-AAGCG-AA-CTTT-TA------TATCA--ATGGA-TATATA-ATTATGT----------TTGTTGA---ATGTTTGTAT--------------T-------TTGTGAAC-TTCGT---AGCAAACTC-----AGTACCACCAGC--------AG---CACTTGACAACGGTCACATATTTCGTGGA-GTTTTTCATTAGTGAA----T-----ATCAT--TTTATACATGTATCTAG--TGA-T-TTTTCCTGACTAGCTCAGGTTCTT-TGTgaagt
gi|8 : TATTT-ATATATTTTCCTGCGTTTCA-TTA-G-TA-AT-AGCAGGGAAAGGTTG----T---ACTTT-CGGC----ACTG-AAG-AT-TGTA---------A--TAGGGAA-TGGTCCA-T-TATTAAC-CAATCGATTAcatgtttggtgtgcaggaatagtgtatgtatgtatgcatgatgtcgagttattacaatgtatcttttcatgc
gi|8 : aTTGTTCACTTCTAGCCGCCG-GCCGTCAA-GAGAT-AGACG-AAAttgttcacttctagccgccggccgtcaagagatagacgaaa
gi|9 : atatttatatattttcctgcgtttcattagtaatagcagggaaaggttgtactttcggcactgaagattgtaatagggaatggtccattattaaccaatcgattaTAATT-ATAT-TTT-CCCGC-TTTCG-TTA-G-TA-AT-AGCGGGAAAA---TG----T---ATTG-ACGAC----ACTG-AAC-AT-TGTA---------A--TATGGAA-TGGTTCA-T-TATTAGC-CAATCGATTACGAGTAGAT-GAAAACAGA-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GAGTTTTTAAGTCTTGGTTCTTTTGACATATTCAACTTCTATTCGCCGTCCCACATGGTTTAAACGA
Alignments
lowQualScore : 2222222222222 222222222222222222222222222222 44444444444444444 111 11 222222 22222222 77777777777777777777777 222222 22222222 111 222222222222222222 111 11111 22222222 33333 333333333
lowQualScore : 4 8 9 0 0000000000000 666 666666666666666666666666666666 66 5 22222222222222222 5 5 5 6 99 8 000 0 0 2 22 3 66 8 0 8 6 6 333333 8 5 8 5 5 3 44444444 0 44 5 88888888888888888888888 1 6 6 6 99 000000 0 00000000 000 1 5 666666666666666666 666 66666 7 55555555 3 6 6 2 88 6 7 3 88888 4 6 8 000000000 5 77 99 6 6 6 8
lowQualScore : . . . . ............. ... .............................. .. . ................. . . . . .. . ... . . . .. . .. . . . . . ...... . . . . . . ........ . .. . ....................... . . . . .. ...... . ........ ... . . .................. ... ..... . ........ . . . . .. . . . ..... . . . ......... . .. .. . . . .
lowQualScore : 4 9 3 5 7777777777777 444 333333333333333333333333333333 44 0 11111111111111111 0 0 0 7 22 0 444 6 8 5 22 2 44 0 8 0 7 7 000000 0 6 0 6 6 2 44444444 8 66 0 77777777777777777777777 0 7 7 7 55 000000 1 77777777 000 0 7 333333333333333333 555 77777 8 55555555 7 7 7 5 88 5 3 2 00000 2 0 0 111111111 7 99 22 7 7 7 0
consensus : TAATT-ATAT-TTTTCCCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAAA---TG----T---AT----T----GTACGAC----ACTG-AAA-ATTGTA----TAA--T-------ATGGAA-TGGTCCA-TT-ATTAGCCAATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACG-AAAC------TTT-TATGTCAA-TTGAAATATTTGTATCATGTAA------TGTTATTTACATATATTTGTATATACACA----AT-TCG-----TTGTGAGG-TCCGTTC-A-CGAACCCCCTGCAGT----TCAGC--------GG---CACCTGGCAACGGACACAGGTTTTNTAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT-----TATCTCTAGTTTG--T-TTTTCCTGGCCGGCCCTGATGCTA-TGTA-AAGGGGAGAGTTTTTTTCAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-CTTTGAGGTATTGTTACGCGTGTCGAAGTACACGTCATGTTTATCTGCATA-TGTCTATG--AT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACTT
Reference ( family-522 ) : TAATT-ATAT-TTTTCCCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAAA---TG----T---AT----T----GTACGAC----ACTG-AAA-ATTGTA----TAA--T-------ATGGAA-TGGTCCA-TT-ATTAGCCAATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACG-AAAC------TTT-TATGTCAA-TTGAAATATTTGTATCATGTAA------TGTTATTTACATATATTTGTATATACACA----AT-TCG-----TTGTGAGG-TCCGTTC-A-CGAACCCCCTGCAGT----TCAGC--------GG---CACCTGGCAACGGACACAGGTTTTNTAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT-----TATCTCTAGTTTG--T-TTTTCCTGGCCGGCCCTGATGCTA-TGTA-AAGGGGAGAGTTTTTTTCAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-CTTTGAGGTATTGTTACGCGTGTCGAAGTACACGTCATGTTTATCTGCATA-TGTCTATG--AT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACTT
gi|1 : TAATT-ATAT-TTTTACCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAA----TG--------AT----T----ATACGG-----ATTGGAAA-ATTGT-----TAA--T-------ATGGAATTGGTCCA-TT-ATTAG-CAATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACGAAAAC------TTTGTATGTCAAGTTGAAATATTGGTAACATGTAA------TGTTATTTACATATATTTATATATACATA----AT-TCG-----TTGTGAGGATCCGTTC-A-CG-ACCCCCTGCAGT----TC-GC--------GG---CACCTGGCAACGGACACAGGTTTTCTAGA-G-TTTTCACGATTT-T----T-----ATCGT--TTT-----TAT-TCTAGTTTG--T-TTTTCCT-GCCGGCCCT-ATGCTACTGTATAAGGGGAGAGTTTTTTTCAAATGTCATGATTTGAGATATGATCTTAATTTA-GTATTGAA-----GAGGTATTGTTATGCATGTTGAAGTACACGTCATGTTTATCTGCATA-TGTCTATGATAT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAATTGTATGTTAGT--GTT--GTG-TTTACGTAATTACAATGAAGGTATATAGTAATACTT
gi|10 : T-ATAT-TTT-CTAGCGTTTCGAT-A---CA-AT-GGCGGGAAAA---TG----T---AT----T-----TAC
gi|11 : GATCTTAATTTATCTATTGAG-CTTTGAAGTAATGTTAAGTGGATTGGAGTAAGCGTCATGTTTTTCTGCATATTGTCTATtgtgtatatttgaaacgatatagctattctgtatcacgatccattcgtgaaattcaggtattgaccaatgtaattgcttaacaag
gi|11 : TCAGGCGA-TGTATGTTAGC--GTT--GTG-TGTG-GT-ATttttaatcaggcgatgtatgttagcgttgtgtgtggtatgggttatac
gi|12 : gatcttaatttatctattgagctttgaagtaatgttaagtggattggagtaagcgtcatgtttttctgcatattgtctatttttaaTTTCCCGCGTTTCGAT-A-G-TA---TAGCGGGGACA---TG----T---ATTTACT----GTGTG-T----ATTT-GAA-ATGGTA----TAG--TCTCTGCAGTGACA-TGATCCA-TT-gggttatac
gi|13 : taTTCCCCGCGTTTCGAT-A-G--A-A-TAGTGGCACAA---TGTGTTT---AC----T----GTATG-T----ATTT-AAA-ATGGTG----TAACCT-------ATGTAG-TGG--CA-TT-ATcatgggggctccggtattgaccaatagaattgcttag
gi|14 : taaT-AATGAATTACAGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGTTAATTAAGTGTTTTA-GT-ATTACAATGGAGGTATA-GGTAATACTctattcaggtattgtcctggcaatagatttgcag
gi|15 : ATA--ATCAATTAATTTCGG-CGTCCTGCACGTACGGTTGGCTGg
gi|16 : gctgagttgctacattgtcatgctacagtttactgttgaaGCAATCACGACTGGTTGTCACGCAA-TGTATGTTAGC--GTT--GTA-TTTT-GT-ACTACAGTGGCGGTATA-GTTAATGCT
gi|18 : TATCTGCATA-TGTCTATA--A-------ATTACGGGCGTCCAACAATCATGGCTGGCTGTCAGGCAA-Tgatc
gi|19 : TATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGAAGGTATA-GGTAATACTT
gi|2 : ATC-ATAT-TTT-CCCGCGTTTCGAT-A-G-TA---TAACGGGAAAA---TGCTG-T---AT----TAACTGTGTG-T----ATTT-GAA-ATGGTA----TAG--TCTATGCAGTGGCA-TGATCCA-TTCATGGG--AGTCAGGATTGCTTAGTA-------AATGGGTTTT-------GT---CAAGGTATTCACTTCTAGCCGCCGTCTCG-CTC-GGGT-TAAAC--AAAT------TTT-CATTT--A-T--AAATATTTATGT-ATATCA------TGTT-TGTAAGTATTTTTGGA------------AT-T-------TTGTGAGG-TCCGTTC-A-CAAACTCCCTACA-T----CCAGC--------GG---CATCTGGCAACGGACACAGGTTTTCTAGA-GTTTTTCA-----T-T----TGCGAAATCG---TTT-----TATCTGTAGT-----T-TTTTCCTGGCCGGCGCTGATG-TA-TTT--TCGGGGAGAATTATTatat
gi|2 : ACGGTTGGCTGTCGAGCAA---TATATTAGT--ATatgtgcatatatatgtatgttgcttagttgctacattttcatgctatacagttttctgttgaaaaaattatcagctgtttgtgtaattataattgtacggttggctgtcgagcaatatattagtatattgatcattttgtaaggagcaagg
gi|20 : atcatattttcccgcgtttcgatagtataacgggaaaatgctgtattaactgtgtgtatttgaaatggtatagtctatgcagtggcatgatccattcatgggagtcaggattgcttagtaaatgggttttgtcaaggtattcacttctagccgccgtctcgctcgggttaaacaaattttcatttataaatatttatgtatatcatgtttgtaagtatttttggaattttgtgaggtccgttcacaaactccctacatccagcggcatctggcaacggacacaggttttctagagtttttcatttgcgaaatcgttttatctgtagttttttcctggccggcgctgatgtattttcggggagaattattatgtgcatatatatgtatgttgcttagttgctacattttcatgctatacagttttctgttgaaaaaattatcagctgtttgtgtaattataattgtCAGC--------GG---CACCTGTCAACGGACACAGGTTTTAGAAATATTTTattgatcattttgtaaggagcaagg
gi|21 : cATT-ATAT-TTTTCC-GCGTTTCGTT-A-G-TA-A-TAGCGGGAAAA---TG----T---AT----T----atc
gi|3 : ATT-ATAT-TT--CTAGCGTTTCG-T-A-T-TACAATGGCGGGAAAA---TG----T---AT----T-----TAC
gi|3 : TTGTAAGTACA-------T-TTGGTATTTTGTGAGG-TCCGTTCCA-CAAACTCCCTACAG------CGGCACTGGCCAGG---CACCTGGCAACGGACACAGATTTTCTAGA-GTTTTT---AATTT-TCGAAT-----ATCATCGTTT-----TATCTCTAG-TTG--TGTTTTCCTGACGGGCTCTGATG-TA-T-TA-Atgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaattgtaagtacatttggtattttgtgaggtccgttccacaaactccctacagcggcactggccaggcacctggcaacggacacagattttctagagtttttaattttcgaatatcatcgttttatctctagttgtgttttcctgacgggctctgatgtattaattatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagataaatcccggcgtcctgcacgttcggttgactgtcgggcaatatattagtatattgatcattttgtagggagcaagg
gi|4 : attatatttctagcgtttcgtattacaatggcgggaaaatgtatttactgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaaTGATT-ATATATTTTCCCGCGTTTCG-T-T-GATA-AT-AGTGCGAAAA---TG----TTGTAT----T----A-ACGAC----ACTG-AAC-GTTGTAATATTAA--T-------ATGGAA-TGATCCA-TT-ATTAGCCAATC--GATTACG-AATAGGA-GAAA-CATGTTTTCGAAATGTTATTCAGGT-ATTCACTTTTAGCCGCCG-CTCGTCAC-GAAA-TAGACG-AAAC------TTT-TATGTCAA-TTGAAATATTTGCATCATATAACATTCATGTTATTTACATATATTTGTATATACACA-----T-ACA-----TTTTGAGA-TCCGTTC-A-CGA-CCCCCTGC-GT----TCAGT--------GG---CACCTGGCAACGGACACAGGTTCTATAGA-GTTTTTCAGGA-TT-T----T-----ATCG---TTT-----TATTTCTAGTTTGTTT-TTTTCCTGGCCGACCCTAATACTA-CGTA-AAGGGGATA-TTTTTTTCAAATGCCATGGCTGGAGATGTGTTATTCATTTATGTATTGAATTTTTTAGGTATTGTTATGTGTATCGAAGTACACGTCGTTTTT-CCTGCCTA-TGT-TATttatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagataaatcccggcgtcctgcacgttcggttgactgtcgggcaatatattagtatattgatcattttgtagggagcaagg
gi|5 : aTAATTGATAT-TTTCTCCGGCTTTCT-T-ATG-TA-ATT-GCGGGAAAA----A----T---GT----T----GTATGACGCACACTA-AAACATTGTA-----AA--T-------ATGGAA-TGGTTCAATT-ATTAGCCAATC--GATTACG-AGTAGAATGCAAACAGATTTTCGAA--GGTATTCAGG-TATTCACTTCTAGCCACGG-CTCGTCACAGAGATTAGACG-AAACCTTTATCTT-TATGTC-A-TTGAAATATTTGTACCATGTAA------TG-TA-TTACATATATTTATAT-TA-ACATTACATGTCG-----TTGTGA-G-TCCGTTC-A-C--ACCCCCTGCA-T----TCAGC--------GGACACATCTG
gi|6 : tgAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT------ATTTCTAGTTT------TTTCCTGGCCGGCCCTAATGCTA-TGTA-AAGGGGAGAGTTTTTT-CAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-----GAGGTATTGTTTCGCGTGTCGAAGTACACGTCATGTTTATCTGCATT-TGTCTATG--A------AATTACGGGCGTTCAGCAATCACGGCTGGCTGTCGGACAA-TGTATGTTAGT--GT----TG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACT
gi|7 : AGT-TAAGCG-AA-C------TTT-TATATCAA-TGGATATATA---ATTATGT----------TTGTTGA---ATGTTTGTAT--------------T-------TTGTGAAC-TTCGT---AGCAAACTC-----AGTACCACCAGC--------AG---CACTTGACAACGGTCACATATTTCGTGGA-GTTTTTCATTAGTGAA----T-----ATCAT--TTTATACATGTATCTAG--TGA-T-TTTTCCTGACTAGCTCAGGTTCTT-TGTgaagt
gi|8 : TATTT-ATATATTTTCCTGCGTTTCA-TTA-G-TA-AT-AGCAGGGAAAGGTTG----T---AC----T----TT-CGGC----ACTG-AAG-ATTGTA------A--T-------AGGGAA-TGGTCCA-TT-ATTAACCAATC--GATTAcatgtttggtgtgcaggaatagtgtatgtatgtatgcatgatgtcgagttattacaatgtatcttttcatgc
gi|8 : aTTGTTCACTTCTAGCCGCCG-GCCGTCAA-GAGA-TAGACG-AAAttgttcacttctagccgccggccgtcaagagatagacgaaa
gi|9 : atatttatatattttcctgcgtttcattagtaatagcagggaaaggttgtactttcggcactgaagattgtaatagggaatggtccattattaaccaatcgattaTAATT-ATAT-TTT-CCCGC-TTTCG-TTA-G-TA-AT-AGCGGGAAAA---TG----T---AT----T----G-ACGAC----ACTG-AAC-ATTGTA------A--T-------ATGGAA-TGGTTCA-TT-ATTAGCCAATC--GATTACG-AGTAGAT-GAAAACAGAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GAGTTTTTAAGTCTTGGTTCTTTTGACATATTCAACTTCTATTCGCCGTCCCACATGGTTTAAACGA
Alignments
lowQualScore : 2222222222222 222222222222222222222222222222 44444444444444444 111 11 222222 22222222 77777777777777777777777 222222 22222222 111 222222222222222222 111 11111 22222222 33333 333333333
lowQualScore : 4 8 9 0 0000000000000 666 666666666666666666666666666666 66 5 22222222222222222 5 5 5 6 99 8 000 0 0 2 22 3 66 8 0 8 6 6 333333 8 5 8 5 5 3 44444444 0 44 5 88888888888888888888888 1 6 6 6 99 000000 0 00000000 000 1 5 666666666666666666 666 66666 7 55555555 3 6 6 2 88 6 7 3 88888 4 6 8 000000000 5 77 99 6 6 6 8
lowQualScore : . . . . ............. ... .............................. .. . ................. . . . . .. . ... . . . .. . .. . . . . . ...... . . . . . . ........ . .. . ....................... . . . . .. ...... . ........ ... . . .................. ... ..... . ........ . . . . .. . . . ..... . . . ......... . .. .. . . . .
lowQualScore : 4 9 3 5 7777777777777 444 333333333333333333333333333333 44 0 11111111111111111 0 0 0 7 22 0 444 6 8 5 22 2 44 0 8 0 7 7 000000 0 6 0 6 6 2 44444444 8 66 0 77777777777777777777777 0 7 7 7 55 000000 1 77777777 000 0 7 333333333333333333 555 77777 8 55555555 7 7 7 5 88 5 3 2 00000 2 0 0 111111111 7 99 22 7 7 7 0
consensus : TAATT-ATAT-TTTTCCCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAAA---TG----T---AT----T----GTACGAC----ACTG-AAA-ATTGTA----TAA--T-------ATGGAA-TGGTCCA-TT-ATTAGCCAATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACG-AAAC------TTT-TATGTCAA-TTGAAATATTTGTATCATGTAA------TGTTATTTACATATATTTGTATATACACA----AT-TCG-----TTGTGAGG-TCCGTTC-A-CGAACCCCCTGCAGT----TCAGC--------GG---CACCTGGCAACGGACACAGGTTTTNTAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT-----TATCTCTAGTTTG--T-TTTTCCTGGCCGGCCCTGATGCTA-TGTA-AAGGGGAGAGTTTTTTTCAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-CTTTGAGGTATTGTTACGCGTGTCGAAGTACACGTCATGTTTATCTGCATA-TGTCTATG--AT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACTT
Reference ( family-522 ) : TAATT-ATAT-TTTTCCCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAAA---TG----T---AT----T----GTACGAC----ACTG-AAA-ATTGTA----TAA--T-------ATGGAA-TGGTCCA-TT-ATTAGCCAATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACG-AAAC------TTT-TATGTCAA-TTGAAATATTTGTATCATGTAA------TGTTATTTACATATATTTGTATATACACA----AT-TCG-----TTGTGAGG-TCCGTTC-A-CGAACCCCCTGCAGT----TCAGC--------GG---CACCTGGCAACGGACACAGGTTTTNTAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT-----TATCTCTAGTTTG--T-TTTTCCTGGCCGGCCCTGATGCTA-TGTA-AAGGGGAGAGTTTTTTTCAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-CTTTGAGGTATTGTTACGCGTGTCGAAGTACACGTCATGTTTATCTGCATA-TGTCTATG--AT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACTT
gi|1 : TAATT-ATAT-TTTTACCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAA----TG--------AT----T----ATACGG-----ATTGGAAA-ATTGT-----TAA--T-------ATGGAATTGGTCCA-TT-ATTAG-CAATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACGAAAAC------TTTGTATGTCAAGTTGAAATATTGGTAACATGTAA------TGTTATTTACATATATTTATATATACATA----AT-TCG-----TTGTGAGGATCCGTTC-A-CG-ACCCCCTGCAGT----TC-GC--------GG---CACCTGGCAACGGACACAGGTTTTCTAGA-G-TTTTCACGATTT-T----T-----ATCGT--TTT-----TAT-TCTAGTTTG--T-TTTTCCT-GCCGGCCCT-ATGCTACTGTATAAGGGGAGAGTTTTTTTCAAATGTCATGATTTGAGATATGATCTTAATTTA-GTATTGAA-----GAGGTATTGTTATGCATGTTGAAGTACACGTCATGTTTATCTGCATA-TGTCTATGATAT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAATTGTATGTTAGT--GTT--GTG-TTTACGTAATTACAATGAAGGTATATAGTAATACTT
gi|10 : T-ATAT-TTT-CTAGCGTTTCGAT-A---CA-AT-GGCGGGAAAA---TG----T---AT----T-----TAC
gi|11 : GATCTTAATTTATCTATTGAG-CTTTGAAGTAATGTTAAGTGGATTGGAGTAAGCGTCATGTTTTTCTGCATATTGTCTATtgtgtatatttgaaacgatatagctattctgtatcacgatccattcgtgaaattcaggtattgaccaatgtaattgcttaacaag
gi|11 : TCAGGCGA-TGTATGTTAGC--GTT--GTG-TGTG-GT-ATttttaatcaggcgatgtatgttagcgttgtgtgtggtatgggttatac
gi|12 : gatcttaatttatctattgagctttgaagtaatgttaagtggattggagtaagcgtcatgtttttctgcatattgtctatttttaaTTTCCCGCGTTTCGAT-A-G-TA---TAGCGGGGACA---TG----T---ATTTACT----GTGTG-T----ATTT-GAA-ATGGTA----TAG--TCTCTGCAGTGACA-TGATCCA-TT-gggttatac
gi|13 : taTTCCCCGCGTTTCGAT-A-G--A-A-TAGTGGCACAA---TGTGTTT---AC----T----GTATG-T----ATTT-AAA-ATGGTG----TAACCT-------ATGTAG-TGG--CA-TT-ATcatgggggctccggtattgaccaatagaattgcttag
gi|14 : taaT-AATGAATTACAGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGTTAATTAAGTGTTTTA-GT-ATTACAATGGAGGTATA-GGTAATACTctattcaggtattgtcctggcaatagatttgcag
gi|15 : ATA--ATCAATTAATTTCGG-CGTCCTGCACGTACGGTTGGCTGg
gi|16 : gctgagttgctacattgtcatgctacagtttactgttgaaGCAATCACGACTGGTTGTCACGCAA-TGTATGTTAGC--GTT--GTA-TTTT-GT-ACTACAGTGGCGGTATA-GTTAATGCT
gi|18 : TATCTGCATA-TGTCTATA--A-------ATTACGGGCGTCCAACAATCATGGCTGGCTGTCAGGCAA-Tgatc
gi|19 : TATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGAAGGTATA-GGTAATACTT
gi|2 : ATC-ATAT-TTT-CCCGCGTTTCGAT-A-G-TA---TAACGGGAAAA---TGCTG-T---AT----TAACTGTGTG-T----ATTT-GAA-ATGGTA----TAG--TCTATGCAGTGGCA-TGATCCA-TTCATGGG--AGTCAGGATTGCTTAGTA-------AATGGGTTTT-------GT---CAAGGTATTCACTTCTAGCCGCCGTCTCG-CTC-GGGT-TAAAC--AAAT------TTT-CATTT--A-T--AAATATTTATGT-ATATCA------TGTT-TGTAAGTATTTTTGGA------------AT-T-------TTGTGAGG-TCCGTTC-A-CAAACTCCCTACA-T----CCAGC--------GG---CATCTGGCAACGGACACAGGTTTTCTAGA-GTTTTTCA-----T-T----TGCGAAATCG---TTT-----TATCTGTAGT-----T-TTTTCCTGGCCGGCGCTGATG-TA-TTT--TCGGGGAGAATTATTatat
gi|2 : ACGGTTGGCTGTCGAGCAA---TATATTAGT--ATatgtgcatatatatgtatgttgcttagttgctacattttcatgctatacagttttctgttgaaaaaattatcagctgtttgtgtaattataattgtacggttggctgtcgagcaatatattagtatattgatcattttgtaaggagcaagg
gi|20 : atcatattttcccgcgtttcgatagtataacgggaaaatgctgtattaactgtgtgtatttgaaatggtatagtctatgcagtggcatgatccattcatgggagtcaggattgcttagtaaatgggttttgtcaaggtattcacttctagccgccgtctcgctcgggttaaacaaattttcatttataaatatttatgtatatcatgtttgtaagtatttttggaattttgtgaggtccgttcacaaactccctacatccagcggcatctggcaacggacacaggttttctagagtttttcatttgcgaaatcgttttatctgtagttttttcctggccggcgctgatgtattttcggggagaattattatgtgcatatatatgtatgttgcttagttgctacattttcatgctatacagttttctgttgaaaaaattatcagctgtttgtgtaattataattgtCAGC--------GG---CACCTGTCAACGGACACAGGTTTTAGAAATATTTTattgatcattttgtaaggagcaagg
gi|21 : cATT-ATAT-TTTTCC-GCGTTTCGTT-A-G-TA-A-TAGCGGGAAAA---TG----T---AT----T----atc
gi|3 : ATT-ATAT-TT--CTAGCGTTTCG-T-A-T-TACAATGGCGGGAAAA---TG----T---AT----T-----TAC
gi|3 : TTGTAAGTACA-------T-TTGGTATTTTGTGAGG-TCCGTTCCA-CAAACTCCCTACAG------CGGCACTGGCCAGG---CACCTGGCAACGGACACAGATTTTCTAGA-GTTTTT---AATTT-TCGAAT-----ATCATCGTTT-----TATCTCTAG-TTG--TGTTTTCCTGACGGGCTCTGATG-TA-T-TA-Atgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaattgtaagtacatttggtattttgtgaggtccgttccacaaactccctacagcggcactggccaggcacctggcaacggacacagattttctagagtttttaattttcgaatatcatcgttttatctctagttgtgttttcctgacgggctctgatgtattaattatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagataaatcccggcgtcctgcacgttcggttgactgtcgggcaatatattagtatattgatcattttgtagggagcaagg
gi|4 : attatatttctagcgtttcgtattacaatggcgggaaaatgtatttactgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaaTGATT-ATATATTTTCCCGCGTTTCG-T-T-GATA-AT-AGTGCGAAAA---TG----TTGTAT----T----A-ACGAC----ACTG-AAC-GTTGTAATATTAA--T-------ATGGAA-TGATCCA-TT-ATTAGCCAATC--GATTACG-AATAGGA-GAAA-CATGTTTTCGAAATGTTATTCAGGT-ATTCACTTTTAGCCGCCG-CTCGTCAC-GAAA-TAGACG-AAAC------TTT-TATGTCAA-TTGAAATATTTGCATCATATAACATTCATGTTATTTACATATATTTGTATATACACA-----T-ACA-----TTTTGAGA-TCCGTTC-A-CGA-CCCCCTGC-GT----TCAGT--------GG---CACCTGGCAACGGACACAGGTTCTATAGA-GTTTTTCAGGA-TT-T----T-----ATCG---TTT-----TATTTCTAGTTTGTTT-TTTTCCTGGCCGACCCTAATACTA-CGTA-AAGGGGATA-TTTTTTTCAAATGCCATGGCTGGAGATGTGTTATTCATTTATGTATTGAATTTTTTAGGTATTGTTATGTGTATCGAAGTACACGTCGTTTTT-CCTGCCTA-TGT-TATttatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagataaatcccggcgtcctgcacgttcggttgactgtcgggcaatatattagtatattgatcattttgtagggagcaagg
gi|5 : aTAATTGATAT-TTTCTCCGGCTTTCT-T-ATG-TA-ATT-GCGGGAAAA----A----T---GT----T----GTATGACGCACACTA-AAACATTGTA-----AA--T-------ATGGAA-TGGTTCAATT-ATTAGCCAATC--GATTACG-AGTAGAATGCAAACAGATTTTCGAA--GGTATTCAGG-TATTCACTTCTAGCCACGG-CTCGTCACAGAGATTAGACG-AAACCTTTATCTT-TATGTC-A-TTGAAATATTTGTACCATGTAA------TG-TA-TTACATATATTTATAT-TA-ACATTACATGTCG-----TTGTGA-G-TCCGTTC-A-C--ACCCCCTGCA-T----TCAGC--------GGACACATCTG
gi|6 : tgAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT------ATTTCTAGTTT------TTTCCTGGCCGGCCCTAATGCTA-TGTA-AAGGGGAGAGTTTTTT-CAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-----GAGGTATTGTTTCGCGTGTCGAAGTACACGTCATGTTTATCTGCATT-TGTCTATG--A------AATTACGGGCGTTCAGCAATCACGGCTGGCTGTCGGACAA-TGTATGTTAGT--GT----TG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACT
gi|7 : AGT-TAAGCG-AA-C------TTT-TATATCAA-TGGATATATA---ATTATGT----------TTGTTGA---ATGTTTGTAT--------------T-------TTGTGAAC-TTCGT---AGCAAACTC-----AGTACCACCAGC--------AG---CACTTGACAACGGTCACATATTTCGTGGA-GTTTTTCATTAGTGAA----T-----ATCAT--TTTATACATGTATCTAG--TGA-T-TTTTCCTGACTAGCTCAGGTTCTT-TGTgaagt
gi|8 : TATTT-ATATATTTTCCTGCGTTTCA-TTA-G-TA-AT-AGCAGGGAAAGGTTG----T---AC----T----TT-CGGC----ACTG-AAG-ATTGTA------A--T-------AGGGAA-TGGTCCA-TT-ATTAACCAATC--GATTAcatgtttggtgtgcaggaatagtgtatgtatgtatgcatgatgtcgagttattacaatgtatcttttcatgc
gi|8 : aTTGTTCACTTCTAGCCGCCG-GCCGTCAA-GAGA-TAGACG-AAAttgttcacttctagccgccggccgtcaagagatagacgaaa
gi|9 : atatttatatattttcctgcgtttcattagtaatagcagggaaaggttgtactttcggcactgaagattgtaatagggaatggtccattattaaccaatcgattaTAATT-ATAT-TTT-CCCGC-TTTCG-TTA-G-TA-AT-AGCGGGAAAA---TG----T---AT----T----G-ACGAC----ACTG-AAC-ATTGTA------A--T-------ATGGAA-TGGTTCA-TT-ATTAGCCAATC--GATTACG-AGTAGAT-GAAAACAGAT
blockSeqs : G A T TATTACAAT GGT CTGTATTAACTGTGTGT T C TAGTCTCTGCA . A C C AG T AAT C AT A GT T A T . CTTTAT . A . T T C AACATTCA AT A TTAACATTACATGTCG G . C G AA GTACCA ACTGGCCA ACA C T AATTTTCGAAT TCG ATACA C TTTGTTT G C . T A A T T TTTTT A T T ATCAATT . TA AA T . . .
blockSeqs : . A C TATGTAATT . TGTTGTATGACGCAC T . TAGTCTATGCA . . . C . . GA C . A TT . . . . . . A . T T C CA GT C AGTACATTTGGTATT G . . . AA GT . . A . TTAGTGAAT T . C TTGTG G C . G A G . T CTTT T A . A . . . . . . .
blockSeqs : . . T TTAGTAAT . TATTTACTGTGTGT T . ATATTAAT . . . C . . AT . . . T . . . . . . . . G T T AA T C TATACACATACA G . . . GA T . . C . TTTGCGAA T . T TGAT A C . G A . T . C A . A . . . . . . .
blockSeqs : . . T TTGATAAT . TGTTTACTGTATGT G . TAACCT . . . C . . . T . . . . . . . . . . . . A . ATT A . . . AA G . . A . CGATTTTT . . T TTT A . . G . . . . . . . . . .
blockSeqs : . . C TTAGTAAT . TTGTATTAACGAC A . AAT . . . . . . . TT . . . . . T . . G . GGATTTT . . A TT G . . . . . . . . .
blockSeqs : . . T TTAGTAAT . TACTTTCGGC G . AT . . . . . . . .
blockSeqs : . . . ATACAAT . TATTGACGAC G . AT . . .
blockSeqs : . . . ATAGTAT .
blockSeqs : . ATAGAAT .
blockSeqs : . ATAGTAT .
blockSeqCons : NTAGTAAT***** TATTNACTGCGCGC**************** N* TAAT************* ATACACGTT************** AA T***** T** A*
originalCons : TAATT-ATAT-TTTTCCCGCGTTTCG-T-A-G-TA-ATTAGCGGGAAAA---TG----T---AT----T----GTACGAC----ACTG-AAA-ATTGTA----TAA--T-------ATGGAA-TGGTCCA-TT-ATTAGCCAATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACG-AAAC------TTT-TATGTCAA-TTGAAATATTTGTATCATGTAA------TGTTATTTACATATATTTGTATATACACA----AT-TCG-----TTGTGAGG-TCCGTTC-A-CGAACCCCCTGCAGT----TCAGC--------GG---CACCTGGCAACGGACACAGGTTTTNTAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT-----TATCTCTAGTTTG--T-TTTTCCTGGCCGGCCCTGATGCTA-TGTA-AAGGGGAGAGTTTTTTTCAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-CTTTGAGGTATTGTTACGCGTGTCGAAGTACACGTCATGTTTATCTGCATA-TGTCTATG--AT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACTT
finalCons : TAATT-ATAT-TTTTCCCGCGTTTCGNTAGTAAT-----AGCGGGAAAA---TGTATTNACTGCGCGC----------------ACTN-AAA-ATTGTATAAT-------------ATGGAA-TGGTCCA-TT-ATTAGCCAATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGA-TAGACG-AAAC------TTT-TATGTCAA-TTGAAATATTTGTATCATGTAA------TGTTATTTACATATATTTGTAATACACGTT--------------TTGTGAGG-TCCGTTC-A-CAAACCCCCTGCAT-----TCAGC--------GG---CACCTGGCAACGGACACAGGTTTTNTAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT-----TATCTCTAGTTTG--T-TTTTCCTGGCCGGCCCTGATGCTA-TGTA-AAGGGGAGAGTTTTTTTCAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-CTTTGAGGTATTGTTACGCGTGTCGAAGTACACGTCATGTTTATCTGCATA-TGTCTATG--AT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GAGTTTTTAAGTCTTGGTTCTTTTGACATATTCAACTTCTATTCGCCGTCCCACATGGTTTAAACGA
Alignments
lowQualScore : 1111 22222 33333333333333333 111 11 1 222222 22222222 9999999999999999999999999 111111 111 222222222222222222 111 11111 22222222 33333 333333333
lowQualScore : 4 8 9 0 8 3 55 3 4444 666 666 4 00000 0 55 4 1 88888888888888888 5 5 5 6 99 8 000 0 0 2 22 3 0 8 0 8 6 6 8 333333 88 5 5 3 44444444 0 44 5 0000000000000000000000000 1 6 6 6 9 999999 6 0 77 000 1 5 666666666666666666 666 66666 7 55555555 3 6 6 2 88 6 7 3 88888 4 6 8 000000000 5 77 99 6 6 6 8
lowQualScore : . . . . . . .. . .... ... ... . ..... . .. . . ................. . . . . .. . ... . . . .. . . . . . . . . ...... .. . . . ........ . .. . ......................... . . . . . ...... . . .. ... . . .................. ... ..... . ........ . . . . .. . . . ..... . . . ......... . .. .. . . . .
lowQualScore : 4 9 3 5 1 6 00 6 1111 444 444 9 66666 5 00 4 7 22222222222222222 0 0 0 7 22 0 444 6 8 5 22 2 6 0 8 0 7 7 0 000000 88 6 6 2 44444444 8 66 0 0000000000000000000000000 0 7 7 7 8 222222 7 1 99 000 0 7 333333333333333333 555 77777 8 55555555 7 7 7 5 88 5 3 2 00000 2 0 0 111111111 7 99 22 7 7 7 0
consensus : TAATT-ATAT-TTTTCCCGCGTTTCGNTA-GTA--AT-AGCGGGAAAA----TG---T---ATTNACTGTGCGCATTN-AAA-ATTGTA----TAA--T-------ATGGAA-TGGTCCA-TT-ATTAGCCAATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGAT-AGACG-AAACTTT-TAT------GTCAA-TTGAAATATTTGTATCATGTAA------TGTTATTTACATATATTTGTAT-A----TACAT-----AT---T--TTGTGAGG-TCCGTTC-A-CAAACCCCCT------GCA-TTCAGC--GG---CACCTGGCAACGGACACAGGTTTTNTAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT-----TATCTCTAGTTTG--T-TTTTCCTGGCCGGCCCTGATGCTA-TGTA-AAGGGGAGAGTTTTTTTCAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-CTTTGAGGTATTGTTACGCGTGTCGAAGTACACGTCATGTTTATCTGCATA-TGTCTATG--AT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACTT
Reference ( family-522 ) : TAATT-ATAT-TTTTCCCGCGTTTCGNTA-GTA--AT-AGCGGGAAAA----TG---T---ATTNACTGCGCGCACTN-AAA-ATTGTA----TAA--T-------ATGGAA-TGGTCCA-TT-ATTAGCCAATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGAT-AGACG-AAACTTT-TAT------GTCAA-TTGAAATATTTGTATCATGTAA------TGTTATTTACATATATTTGTA--A----TACAC-----GT---T--TTGTGAGG-TCCGTTC-A-CAAACCCCCT------GCA-TTCAGC--GG---CACCTGGCAACGGACACAGGTTTTNTAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT-----TATCTCTAGTTTG--T-TTTTCCTGGCCGGCCCTGATGCTA-TGTA-AAGGGGAGAGTTTTTTTCAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-CTTTGAGGTATTGTTACGCGTGTCGAAGTACACGTCATGTTTATCTGCATA-TGTCTATG--AT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACTT
gi|1 : TAATT-ATAT-TTTTACCGCGTTTCG-TA-GTA--ATTAGCGGGAAA----------------TGATTATACGGATTGGAAA-ATTGT-----TAA--T-------ATGGAATTGGTCCA-TT-ATTAG-CAATC--GATTACG-AGTAGGA-GAAAACAGGTTTTCGAAATGGTATTCAGGTTATTCACTTCTAGCCGCCG-CTCGTCAC-GAGAT-AGACGAAAACTTTGTAT------GTCAAGTTGAAATATTGGTAACATGTAA------TGTTATTTACATATATTTATAT-A----TACATA----AT---TCGTTGTGAGGATCCGTTC-A-C-GACCCCCT------GCAGTTC-GC--GG---CACCTGGCAACGGACACAGGTTTTCTAGA-G-TTTTCACGATTT-T----T-----ATCGT--TTT-----TAT-TCTAGTTTG--T-TTTTCCT-GCCGGCCCT-ATGCTACTGTATAAGGGGAGAGTTTTTTTCAAATGTCATGATTTGAGATATGATCTTAATTTA-GTATTGAA-----GAGGTATTGTTATGCATGTTGAAGTACACGTCATGTTTATCTGCATA-TGTCTATGATAT-AATGAATTACGGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAATTGTATGTTAGT--GTT--GTG-TTTACGTAATTACAATGAAGGTATATAGTAATACTT
gi|10 : T-ATAT-TTT-CTAGCGTTTCGATA--CA--AT-GGCGGGAAAA----TG---T---ATTTACTGTGTATATTT-GAA-ACGATA----TA
gi|11 : GATCTTAATTTATCTATTGAG-CTTTGAAGTAATGTTAAGTGGATTGGAGTAAGCGTCATGTTTTTCTGCATATTGTCTATgctattctgtatcacgatccattcgtgaaattcaggtattgaccaatgtaattgcttaacaag
gi|11 : TCAGGCGA-TGTATGTTAGC--GTT--GTG-TGTG-GT-ATttttaatcaggcgatgtatgttagcgttgtgtgtggtatgggttatac
gi|12 : gatcttaatttatctattgagctttgaagtaatgttaagtggattggagtaagcgtcatgtttttctgcatattgtctatttttaaTTTCCCGCGTTTCGATA-GTA---T-AGCGGGGACA----TG---T---ATTTACTGTGTGTATTT-GAA-ATGGTA----TAG--TCTCTGCAGTGACA-TGATCCA-TT-gggttatac
gi|13 : taTTCCCCGCGTTTCGATA-G-A--AT-AGTGGCACAA----TG---T---GTTTACTGTATGTATTT-AAA-ATGGTG----TAACCT-------ATGTAG-TGG--CA-TT-ATcatgggggctccggtattgaccaatagaattgcttag
gi|14 : taaT-AATGAATTACAGGCGTCCAGCAATCACGGCTGGCTGTCGGGCAA-TGTATGTTAGTTAATTAAGTGTTTTA-GT-ATTACAATGGAGGTATA-GGTAATACTctattcaggtattgtcctggcaatagatttgcag
gi|15 : ATA--ATCAATTAATTTCGG-CGTCCTGCACGTACGGTTGGCTGg
gi|16 : gctgagttgctacattgtcatgctacagtttactgttgaaGCAATCACGACTGGTTGTCACGCAA-TGTATGTTAGC--GTT--GTA-TTTT-GT-ACTACAGTGGCGGTATA-GTTAATGCT
gi|18 : TATCTGCATA-TGTCTATA--A-------ATTACGGGCGTCCAACAATCATGGCTGGCTGTCAGGCAA-Tgatc
gi|19 : TATGTTAGT--GTT--GTG-TTTA-GT-ATTACAATGAAGGTATA-GGTAATACTT
gi|2 : ATC-ATAT-TTT-CCCGCGTTTCGATA-GTA---T-AACGGGAAAA----TGCTGT---ATTAACTGTGTGTATTT-GAA-ATGGTA----TAG--TCTATGCAGTGGCA-TGATCCA-TTCATGGG--AGTCAGGATTGCTTAGTA-------AATGGGTTTT-------GT---CAAGGTATTCACTTCTAGCCGCCGTCTCG-CTC-GGGTT-AAAC--AAATTTT-CAT------TT--A-T--AAATATTTATGT-ATATCA------TGTT-TGTAAGTATTTTTGGA--A----T--------------T--TTGTGAGG-TCCGTTC-A-CAAACTCCCT------ACA-TCCAGC--GG---CATCTGGCAACGGACACAGGTTTTCTAGA-GTTTTTCA-----T-T----TGCGAAATCG---TTT-----TATCTGTAGT-----T-TTTTCCTGGCCGGCGCTGATG-TA-TTT--TCGGGGAGAATTATTatat
gi|2 : ACGGTTGGCTGTCGAGCAA---TATATTAGT--ATatgtgcatatatatgtatgttgcttagttgctacattttcatgctatacagttttctgttgaaaaaattatcagctgtttgtgtaattataattgtacggttggctgtcgagcaatatattagtatattgatcattttgtaaggagcaagg
gi|20 : atcatattttcccgcgtttcgatagtataacgggaaaatgctgtattaactgtgtgtatttgaaatggtatagtctatgcagtggcatgatccattcatgggagtcaggattgcttagtaaatgggttttgtcaaggtattcacttctagccgccgtctcgctcgggttaaacaaattttcatttataaatatttatgtatatcatgtttgtaagtatttttggaattttgtgaggtccgttcacaaactccctacatccagcggcatctggcaacggacacaggttttctagagtttttcatttgcgaaatcgttttatctgtagttttttcctggccggcgctgatgtattttcggggagaattattatgtgcatatatatgtatgttgcttagttgctacattttcatgctatacagttttctgttgaaaaaattatcagctgtttgtgtaattataattgtCAGC--GG---CACCTGTCAACGGACACAGGTTTTAGAAATATTTTattgatcattttgtaaggagcaagg
gi|21 : cATT-ATAT-TTTTCC-GCGTTTCGTTA-GTA--AT-AGCGGGAAAA----TG---T---ATTatc
gi|3 : ATT-ATAT-TT--CTAGCGTTTCG-TA-TTACAAT-GGCGGGAAAA----TG---T---ATTTACTGTGTATATTT-AA
gi|3 : TTGTA--AG---TACATTTGGTAT---T--TTGTGAGG-TCCGTTCCA-CAAACTCCCTACAGCGGCA-CT-GGCCAGG---CACCTGGCAACGGACACAGATTTTCTAGA-GTTTTT---AATTT-TCGAAT-----ATCATCGTTT-----TATCTCTAG-TTG--TGTTTTCCTGACGGGCTCTGATG-TA-T-TA-Acgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaattgtaagtacatttggtattttgtgaggtccgttccacaaactccctacagcggcactggccaggcacctggcaacggacacagattttctagagtttttaattttcgaatatcatcgttttatctctagttgtgttttcctgacgggctctgatgtattaattatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagataaatcccggcgtcctgcacgttcggttgactgtcgggcaatatattagtatattgatcattttgtagggagcaagg
gi|4 : attatatttctagcgtttcgtattacaatggcgggaaaatgtatttactgtgtatatttaacgatagcctgattcagtatcacgaaaccattctgaaattctaggtttcgaccaatgtgattccttaacaagggtttttttttttctttttcggtcttttttgttttggtcaattggctttcttttaaccgcgtctcgcacgcggttaaaagcaaattttgaaTGATT-ATATATTTTCCCGCGTTTCGTTG-ATA--AT-AGTGCGAAAA----TG---TTGTATTAAC---G-ACACTG-AAC-GTTGTAATATTAA--T-------ATGGAA-TGATCCA-TT-ATTAGCCAATC--GATTACG-AATAGGA-GAAA-CATGTTTTCGAAATGTTATTCAGGT-ATTCACTTTTAGCCGCCG-CTCGTCAC-GAAAT-AGACG-AAACTTT-TAT------GTCAA-TTGAAATATTTGCATCATATAACATTCATGTTATTTACATATATTTGTAT-A----TACAC-----ATACAT--TT-TGAGA-TCCGTTC-A-CGA-CCCCCT------GCG-TTCAGT--GG---CACCTGGCAACGGACACAGGTTCTATAGA-GTTTTTCAGGA-TT-T----T-----ATCG---TTT-----TATTTCTAGTTTGTTT-TTTTCCTGGCCGACCCTAATACTA-CGTA-AAGGGGATA-TTTTTTTCAAATGCCATGGCTGGAGATGTGTTATTCATTTATGTATTGAATTTTTTAGGTATTGTTATGTGTATCGAAGTACACGTCGTTTTT-CCTGCCTA-TGT-TATttatgtattttttggagttgctatagttctcttgttgaaacaatccgttgtaattagataaatcccggcgtcctgcacgttcggttgactgtcgggcaatatattagtatattgatcattttgtagggagcaagg
gi|5 : aTAATTGATAT-TTTCTCCGGCTTTC-TTATGTA--AT-TGCGGGAAAAATGTTG---T---AT-GAC---GCACACTA-AAACATTGTA-----AA--T-------ATGGAA-TGGTTCAATT-ATTAGCCAATC--GATTACG-AGTAGAATGCAAACAGATTTTCGAA--GGTATTCAGGT-ATTCACTTCTAGCCACGG-CTCGTCACAGAGATTAGACG-AAACCTT-TATCTTTATGTCA--TTGAAATATTTGTACCATGTAA------TG-TA-TTACATATATTTATATTAACATTACAT-----GT---CG-TTGTGA-G-TCCGTTC-A-C--ACCCCCT------GCA-TTCAGC--GGACACATCTG
gi|6 : tgAGA-GTTTTTCACGATTT-T----T-----ATCGT--TTT------ATTTCTAGTTT------TTTCCTGGCCGGCCCTAATGCTA-TGTA-AAGGGGAGAGTTTTTT-CAAATGTCATGATTGGAGATATGATCTTAATTTATGTATTGAA-----GAGGTATTGTTTCGCGTGTCGAAGTACACGTCATGTTTATCTGCATT-TGTCTATG--A------AATTACGGGCGTTCAGCAATCACGGCTGGCTGTCGGACAA-TGTATGTTAGT--GT----TG-TTTA-GT-ATTACAATGGAGGTATA-GGTAATACT
gi|7 : AGTT-AAGCG-AA-CTTT-TAT------ATCAA-TGGATATATA---ATTATGT----------TTGTTGA---ATGTTTGTA------------------T---T--TTGTGAAC-TTCGT---AGCAAACTCAGT------ACC-ACCAGC--AG---CACTTGACAACGGTCACATATTTCGTGGA-GTTTTTCATTAGTGAA----T-----ATCAT--TTTATACATGTATCTAG--TGA-T-TTTTCCTGACTAGCTCAGGTTCTT-TGTgaagt
gi|8 : TATTT-ATATATTTTCCTGCGTTTCATTA-GTA--AT-AGCAGGGAAAGGT-TG---T---ACT---TTCG-GCACTG-AAG-ATTGTA------A--T-------AGGGAA-TGGTCCA-TT-ATTAACCAATC--GATTAcatgtttggtgtgcaggaatagtgtatgtatgtatgcatgatgtcgagttattacaatgtatcttttcatgc
gi|8 : aTTGTTCACTTCTAGCCGCCG-GCCGTCAA-GAGAT-AGACG-AAAttgttcacttctagccgccggccgtcaagagatagacgaaa
gi|9 : atatttatatattttcctgcgtttcattagtaatagcagggaaaggttgtactttcggcactgaagattgtaatagggaatggtccattattaaccaatcgattaTAATT-ATAT-TTT-CCCGC-TTTCGTTA-GTA--AT-AGCGGGAAAA----TG---T---ATTGAC---G-ACACTG-AAC-ATTGTA------A--T-------ATGGAA-TGGTTCA-TT-ATTAGCCAATC--GATTACG-AGTAGAT-GAAAACAGAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GAGTTTTTAAGTCTTGGTTCTTTTGACATATTCAACTTCTATTCGCCGTCCCACATGGTTTAAACGA