lowQualScore : 2 1111 2222222 333333 444444444444444444444444 444444444444 11 1
lowQualScore : 2 666 0 1 6666 3 55 0 0000000 1 999 3 888888 33 2 000000000000000000000000 4 2 6 2 2 5555 1 22 66666 111111111111 1 1 3 66 1 1 1 1 1 1 7 0 666666 2 2 0
lowQualScore : . ... . . .... . .. . ....... . ... . ...... .. . ........................ . . . . . .... . .. ..... ............ . . . .. . . . . . . . . ...... . . .
lowQualScore : 5 888 9 4 0000 6 00 1 5555555 4 333 6 333333 99 9 333333333333333333333333 7 4 7 1 0 9999 7 44 11111 666666666666 6 6 0 11 5 5 5 6 5 5 2 7 444444 4 8 7
consensus : ACCGAA-ACAGTCA-AACG--TATTGTG-A--CGTCAT--NNC--TAGAACGT--CA-TA-T-AGCGGG--A-CT-A--------A--G--GGC--AA-CA-T-TG-TTT-A-TACG--A-TATAAA-GAATG--T-----TG---NT-AA----G-T-CAAA-TGAA-CCA-A-TC-AAATTGCGT-G-TTACCAAGT------GAAA-TTAAATTA
Reference ( gi|7 ) : ACTCAA-AGAGTCAGAACG--CGTTGTG-A--CGTCAT--AAT--TAGAACAT--TA-TAAC-ACCGGG--A-CT-G--------A--G--GGT--AG-CA-T-TG-TTT-A-TACG--G-TATAAA-GAATG--T-----TG---AT-AC----G-T-CAAA-TGAA-GCA-A-TC-AGATTGCGT-G-TTACCAGGT------GAAA-TTGAATCA
gi|5 : ACTGAACAGA-CCAGAACG--CAATGTGGA--CGTCAT--AAT--TAGAACGT--CA-TATT-GGTGGG--A-AT-A--------AATG--GGC--AA-CATT-TC-TTT-A-TAC---A-TGTA----AATG--TG----TGCC-AA-AA----G-T--AAC-TGAA-ACA-ATTC-AAACTGCAT-G-TTA
gi|8 : ccaaaatgaaaCAA-GGAGTCA-AATG--TATCGTG-A--CTT--T--AATCATAGGGCAT--TA-TA-----TGGT--A-TT-A--------A--A----------CT-T-TG-TTT-A-TATG--A-TATGAATGAATA--T-----CG---AT-AAA---G-T-CAAA-TGAA-CCA-A-TC-ACATattattttggaact
gi|16 : ggaaacAA-ACAGTCA-AACGAATATTGTG-A--CGTCAT--ACC--TAGAACAT--CA-T-GT-AACGGG--A-CT-GA-------A--G--GGC--AA-CA-C-TGTTTT-A-TACG--A-TACAAA-gtgaatttaaattatttatggaa
gi|17 : agcaaaatgaA-ACAGTCA-AACA--CATTGTG-A--AGTCAT--AAT--TAGAACGG--CA-T-AT-AGCGGG--ACCT-C--------A--G--GGC--AA-CA-T-TGTTTT-A-TACG--G-TATAAA-
gi|1 : caaaatgaaattcA-ACAGTCAAAA-G--AACTGTG-A--CGCCTT--TTC--TTGAACGT--AA-TA-T-AGCGGG--A-CT-A--------A--A--AGACAAT-TA-T-TG-TTT-A-TACA--A-TATGAA-GGATG--T-----TG---ATGAA----A-T-CGAT-TGAA-CCA-A-TC-AAACTGTGT-G-TTACTAAATCATTTGGAAA-TTAATTC
gi|13 : tatcccgacttactttatatcgtataaaaataataagtattacattcattccttataataatttttaataacttgccttggacatcaaaatcatgaaaatggaaactgA-ACAGTCA-AACG--TATTGTG-A--CGTCAT--TCC--TGGGACCT--CC-TTAT-AGCGGG--A-CC-A--------A--AACGGC--AA-CT-T-TG-TAT-A-CTCG--A-TATtaatg
gi|3 : gtcaaaatggtaacagGTC-GAACA--TATTGTG-A--AGTCAT--TCC--TGGAATAT--CA-TA-T-AGCGGG--A-CT-A--------A--A----C--AG-CAATATG-TTA-A-TATG--A-TATAAA-GAATG--T-----Ttgttg
gi|6 : tgtccaaaattactttatatcgtatgcattgataaaaaatatttttagtagctgtaaactgcatttactctattgacatggaccaatattgtcactgcaacaaaatagaaactgaactAAAG--TATTGTG-AATCGTCCTTAGAC--AAGAACGT--CAATAGT-CGCGGG--A-CT-AC-------A--G--AAC--AAACA-T-TG-TTTTA-AACG--A-TGTAAA-GAGTG--T-----TT----T-AA----G-T-CAAAATGAATCCG-A-TC-AAATTGAGTGG-TTAC--GGT------AAA
gi|10 : aatgcaaacactgaacataTGTG-A--CATCAT--TTC--TAGGCTGT--CA-TA-T-AATGGG--G-CC-A--------A--AT-GGC--AA-CT-T-TG-TTT-A-TAAC--A-TATAAA-GAATG--T-----AG---A
gi|4 : acTG-A--CGTCTT--AAC---AGAACGT--CA-TATC-GC-GGGCAA-CT-AC-------A--G--AAC--A--CA-T-TG-TTT-T-AACG--A-TTGAAA-GAGTG--T-----TG---TT-AA----G-TTCAAA-TGAA-CCG-A-TC-AAATTGAGT-G-TTTACAGGT------GAAACTTAAATgaaatatatgtactcaaagtgtgtatatatta
gi|9 : agcaccaaaatgaaaaaactgaacataaaaatatatTG-A--TGTCAT--TCC--TGAAACATCATA-TAGCTAGCAGG--A-CT-ACACTGTAAA--A--GGC--AA-CT-T-TG-TTT-A-TATG--A-TATAAtta
gi|14 : acaaaataaaaaacgaacagccaaacgtacatgtaattCGGG--A-CTTG--------A--GA-GGC--AA-CA-T-TG-TTT-AATACG--GGTATAAA-GAATTCTT-----TG---CT-AAA---G-T-CAAA-TGAA-CTA-A-TC-AGATTACGT-G-TTACAAG
gi|15 : tagCGGG--A-CT-A--------A--A--GG----G-CA----------A-CATA--A-TGTACA-GAATG--T-----TG---CTAAG----G-T-CAAA-AGAA-TCA-A-TC-AAATAGCAA-G-TTACAAGtatcaaat
gi|29 : tcatatagCGGG--A-CTTG--------A--G--AGC--AA-CA-T-CG-TTT---TAAGCTG-TATAAA-GAATG--A-----TG---CTCAA----G-T-CAAA-catcatgtaaaatca
gi|37 : T-G--------A--G--GGC--AA-CA-T-TGTTTT-A-TACG--G-TATA
gi|18 : gcgatact-T-CG-TTT-A-TACG--A-TATGAC-TAATG--TACAAGTG---ATAAA----G-T-TGAA-TAAA-CCA-A-TC-AAACTGCAT-G-TTAC
gi|2 : ctagaaggtt-T-TG-TTA-A-TGTG--A-TATATA-GACTG--T-----TG---TT-AAA---G-T-CAAA-TGAA--CAGA-AC-AAACTGCGT-G-CTA-CAATT------AGAA-TTAATTCAatg
gi|11 : tgttccaatgtattcaatatcgtttaaattagtttcatttcttacgatccaatttagcaaactgggacctacatgcatttcaccgtgggaataatatgggacctaaagattgaaatatcgtttgacattatttctttagcatcatatagcgaaactaaacgccaaatG-TTT-A-TACG--A-TATAAA-GAATG--T-----TG---ATGAA----G-T-TATA-TGAA-CTA-A-TCAAAATTGCAT-G-Ta
gi|21 : tggatgtacatgtgggtaccgaaatctgccgatttg-A-TACG--G-CATATA-GAATG--T-----TG---AT-----------CAAA-TGGA-CCA-A-TC-AGATTGCGT-G-TTA-CAAGT------GAAA-ATGAATTAgcaagcatggaa
gi|24 : -TACG--A-TATAAA-GAATG--T-----TG---ATGAA----G-T-TATA-TGAA-CTA-A-TC-AAATTGCAT-G-TTGCAAG
gi|25 : ACG--A-TATAAA-GAATG--T-----TG---AT-AA----AAT-CAAA-TGAA-CCA-A-TC-AAATTACGT-G-TTAcatgga
gi|19 : a--G-TATAAA-GAATG--T-----AG---CT-AAA---G-T-CAAA-TGAA-GCA-T-TA-AGATTGTGT-G-TTA-CAAGT------GAAA-TTAAATTAaagttata
gi|22 : c-TATAAA-GAATG--T-----TGCTAAT-AAA---G-T-CAAA-TGAA-CCA-A-TC-AGATTGCGT-G-TTA-CAAAT------GAAA-TTAAAt
gi|26 : AAA-GAATG--T-----TT---CT-AAA---G-T-CAAA-TGAT-CCA-A-TC-CAATTGCGT-G-CTA-CAAGT------GAAA-TTGAAT
gi|20 : AAA-TAATG--T-----TG---CTAAA----G-T-CAGATTGGA-CCA-A-TC-AAAATGCGC-G-TTACAAGTA------AAAA-TTAAATTA
gi|32 : A-GAATG--T-----TC---CT-AAA---G-T-CAAA-TGAA-CTA-A-CC-AGATTGCGT-G-TTA-CAAGT------AAAA-ttc
gi|23 : -GAATG--T-----TG---CT-ATTAAAG-T-CAAA-TGAA-CCA-A-TC-AAATTTAGT-G-TTA-CAAGT------AAAA-TTAAGTTA
gi|31 : at--T-----TG---CT-ACAA--G-T-CAAA-TGAA-CCA-G-TC-AAATTGAGT-G-TTA-CAAGT------AAAA-T
gi|27 : ----G-T-CAAA-TGAA-CCA-A-TC-AGATTGCGT-G-TTA-CAAAT------GAAA-Taaaaa
gi|28 : gaataatgctattaaa----G-T-CAAA-TGAT-CCA-A-TC-CAATTGCGT-GCCTACCAAGT------GAAA-TTGAATaaaa
gi|33 : tgtttctaaa-T-CAAA-TGAG-CCA-A-TC-AAATTGAGT-G-CTA-CAAGT------GAAA-TT
gi|40 : -T-CAAA-TGAA-CCA-A-TC-AAATTGAGT-G-TTACacatta
gi|35 : AAA-TGAA-CCA-A-TC-AGATTGCAT-G-TTA-CAAGT------TAAA-TTaaa
gi|34 : AA-TGAA-CCA-A-TC-AGATTGCGT-G-TTACAAGA-------AAAA-TTAAATat
gi|38 : GAA-CCA-A-TC-AAATTGAGT-G-TTA-CAAGT------AAAA-TTCAA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TTCTATATGTAAGGGATCAATATTGTAGCAAAAAAAATATAGAAACTGAACAACCAATCGTATTATGACCTCATTCCTATCTGAACGTCATATAGCTGGGTTA
Unaligned ( gi|30 ): AATATTGCCATAGCAACAAAATGGAAACTGCATGAACAACCAAACATATTGTGA
Unaligned ( gi|36 ): GATGTACATGTGGGGTACCGAAATCTGCCGATTGGTTT
Unaligned ( gi|39 ): AACCAATCAAATTGAGTGTTACAAGTAAGATA
Alignments
lowQualScore : 11111 22222222222222222 222222222222 2222222
lowQualScore : 2 88888 3 6 0 44 2 11111 2 33 5555 555 2 5 333 4444 33 2 44444444444444444 4 2 2 6 2 1 22 1 1 22 55555 1 111111111111 1 1 1 1 1 1 1 1 1 7777777 555555 3
lowQualScore : . ..... . . . .. . ..... . .. .... ... . . ... .... .. . ................. . . . . . . .. . . .. ..... . ............ . . . . . . . . . ....... ...... .
lowQualScore : 5 33333 3 2 2 22 9 11111 9 99 9999 000 7 0 999 7777 11 2 11111111111111111 7 2 1 3 0 9 55 7 5 11 44444 0 111111111111 5 5 4 4 3 3 3 3 3 6666666 000000 6
consensus : ACCNAAAC-----AG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTA---GAACGTCA-TA-TAG---C----GGG--A-CT--A--------A--G--GGCAA-CA-TT-G-TTT-A-TA--CGA-TATAAA-GAATG--T-----TGCT--A----AA---G-T-CAAA-T-GAA-CCAA-TC-AAATTGCGT-G-TTA-------CAAGT------GAAA-TTAAATTA
Reference ( family-52 ) : ACCGAAAC-----AG-TCA-AACG--TAT-TGT-----G-A--CGTCATNN--CTA---GAACGTCA-TA-TAG---C----GGG--A-CT--A--------A--G--GGCAA-CA-TT-G-TTT-A-TA--CGA-TATAAA-GAATG--T-----TGNT--A----A----G-T-CAAA-T-GAA-CCAA-TC-AAATTGCGT-G-TTAC------CAAGT------GAAA-TTAAATTA
gi|1 : AAC-----AG-TCA-AAAG--AAC-TGT-----G-A--CGCCTTTT--CTT---GAACGTAA-TA-TAG---C----GGG--A-CTA-A--------A--A--GACAATTA-TT-G-TTT-A-TA--CAA-TATGAA-GGATG--T-----TGATG-A----A----A-T-CGAT-T-GAA-CCAA-TC-AAACTGTGT-G-TTAC------TAAATCATTTGGAAA-TTAA
gi|10 : tatcccgacttactttatatcgtataaaaataataagtattacattcattccttataataatttttaataacttgccttggacatcaaaatcatgaaaatggaaactgAC-TGT-----G-A--CATCATTT--CTA---GGCTGTCA-TA-TAA---T----GGG--G-CC--A--------A--AT-GGCAA-CT-TT-G-TTT-A-TA--ACA-TATAAA-GAATG--T-----AGAG--A----A----A-T--ATA-T-GTA-C----TC-AAAGTGTGT-A-Tttctaatg
gi|11 : -G-TTT-A-TA--CGA-TATAAA-GAATG--T-----TGATG-A----A----G-T-TATA-T-GAA-CTAA-TCAAAATTGCAT-G-Tatatta
gi|12 : tggatgtacatgtgggtaccgaaatctgccgatttgAAC-----AA-CCA-ATCG--TAT-TAT-----G-A--CCTCATTC--CTATCTGAACGTCA-TA-TAG---C----TGG--G-TT--A--------gcaagcatggaa
gi|13 : ttctatatgtaagggatcaatattgtagcaaaaaaaatatagaaactgAAC-----AG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTG---GGACCTCCTTA-TAG---C----GGG--A-CC--A--------A--AACGGCAA-CT-TT-G-TAT-A-CT--CGA-TAT
gi|14 : gtcaaaatggtaacag-TAG---C----GGG--A-CTTGA--------G--A--GGCAA-CA-TT-G-TTT-AATA--CGGGTATAAA-GAATTCTT-----TGCT--A----AA---G-T-CAAA-T-GAA-CTAA-TC-AGATTACGT-G-TTA-------CAAGT---------A-TCAAATtgttg
gi|15 : TCA-TA-TAG---C----GGG--A-CTA-A--------A--G--GGCAA-CA-T---------------AA-TGTACA-GAATG--T-----TGCT--A----AG---G-T-CAAA-A-GAA-TCAA-TC-AAATAGCAA-G-TTACAAGCATCATGT------AAAA-TCA
gi|16 : AAAC-----AG-TCA-AACGAATAT-TGT-----G-A--CGTCATAC--CTA---GAACATCA-TG-TAA---C----GGG--A-CTG-A--------A--G--GGCAA-CA-CT-GTTTT-A-TA--CGA-TACAAA-
gi|17 : agcaaaatgaAAC-----AG-TCA-AACA--CAT-TGT-----G-A--AGTCATAA--TTA---GAACGGCA-TA-TAG---C----GGG--ACCT--C--------A--G--GGCAA-CA-TT-GTTTT-A-TA--CGG-TATAAA-
gi|18 : caaaatgaaattc-TC-G-TTT-A-TA--CGA-TATGAC-TAATG--TACAAGTGAT--A----AA---G-T-TGAA-T-AAA-CCAA-TC-AAACTGCAT-G-TTAC------
gi|19 : ctagaaggtt-TATAAA-GAATG--T-----AGCT--A----AA---G-T-CAAA-T-GAA-GCAT-TA-AGATTGTGT-G-TTA-------CAAGT------GAAA-TTAAATTAatg
gi|2 : cgACCTAAAG-----AT-TGA-AA----TAT-CGTTT---G-A--CATTATTT--CTT---TAGCATCA-TA-TAG---C----GAA--A-CT--A--------A--A--CGCCA-AA-TTTG-TTA-A-TG--TGA-TATATA-GACTG--T-----TGTT--A----AA---G-T-CAAA-T-GAA-CAGA-AC-AAACTGCGT-G-CTA-------CAATT------AGAA-TTAAt
gi|20 : tgttccaatgtattcaatatcgtttaaattagtttcatttcttacgatccaatttagcaaactgggacctacatgcatttcaccgtgggaataatatgggAAA-TAATG--T-----TGCT--A----AA---G-T-CAGA-TTGGA-CCAA-TC-AAAATGCGC-G-TTAC-------AAGT------AAAAATTAAATTAttcaa
gi|21 : -A-TA--CGG-CATATA-GAATG--T-----TGAT----------------CAAA-T-GGA-CCAA-TC-AGATTGCGT-G-TTA-------CAAGT------GAAA-ATGAATTAttc
gi|22 : -TATAAA-GAATG--T-----TGCT--A----ATAAAG-T-CAAA-T-GAA-CCAA-TC-AGATTGCGT-G-TTA-------CAAAT------GAAA-TTAAA
gi|23 : -GAATG--T-----TGCT--ATTAAA----G-T-CAAA-T-GAA-CCAA-TC-AAATTTAGT-G-TTA-------CAAGT------AAAA-TTAAGTTA
gi|24 : at-TA--CGA-TATAAA-GAATG--T-----TGATG-A----A----G-T-TATA-T-GAA-CTAA-TC-AAATTGCAT-G-TTG-------CAAG
gi|25 : A--CGA-TATAAA-GAATG--T-----TGAT--A----A----AAT-CAAA-T-GAA-CCAA-TC-AAATTACGT-G-TTA--------AAGT------catgga
gi|26 : aAAA-GAATG--T-----TTCT--A----AA---G-T-CAAA-T-GAT-CCAA-TC-CAATTGCGT-G-CTA-------CAAGT------GAAA-TTGAATtata
gi|27 : AA-TAATG--C-----TATT--A----AA---G-T-CAAA-T-GAA-CCAA-TC-AGATTGCGT-G-TTA-------CAAAT------GAAA-TAAAA
gi|28 : gTG--T-----TTCT--A----AA---G-T-CAAA-T-GAT-CCAA-TC-CAATTGCGT-GCCTAC------CAAGT------GAAA-TTGAAT
gi|29 : ---C----GGG--A-CTT-G--------A--G--AGCAA-CA-TC-G-TTT---TAAGCTG-TATAAA-GAATG--A-----TGCTC-A----A----G-T-CAAA-
gi|3 : AAC-----TG-TCG-AACA--TAT-TGT-----G-A--AGTCATTC--CTG---GAATATCA-TA-TAG---C----GGG--A-CT--A--------A--AC-AGCAA-TA--T-G-TTA-A-TA--TGA-TATAAA-GAATG--T-----T
gi|31 : tgtccaaaattactttatatcgtatgcattgataaaaaatatttttagtagctgtaaactgcatttactctattgacatggaccaatattgtcactgcaacaaaatagaaactg--T-----TGCT--ACA--A----G-T-CAAA-T-GAA-CCAG-TC-AAATTGAGT-G-TTA-------CAAGT------AAAA-TAAAA
gi|32 : A-GAATG--T-----TCCT--A----AA---G-T-CAAA-T-GAA-CTAA-CC-AGATTGCGT-G-TTA-------CAAGT------AAAA-a
gi|33 : -T-CAAA-T-GAG-CCAA-TC-AAATTGAGT-G-CTA-------CAAGT------GAAA-TTACATTA
gi|34 : AA-T-GAA-CCAA-TC-AGATTGCGT-G-TTA-------CAAGA------AAAA-TTAAAT
gi|35 : AAA-T-GAA-CCAA-TC-AGATTGCAT-G-TTA-------CAAGT------TAAA-TTA
gi|37 : G---C----GAT--A-CTT-G--------A--G--GGCAA-CA-TT-GTTTT-A-TA--CGG-TATAt
gi|38 : -GAA-CCAA-TC-AAATTGAGT-G-TTA-------CAAGT------AAAA-TTCAA
gi|39 : AA-CCAA-TC-AAATTGAGT-G-TTA-------CAAGT------AAGA-
gi|4 : A-AATA--TAT-TG--------A--CGTCTTAA--C-A---GAACGTCA-TA-TCG---C----GGGCAA-CT--AC-------A--G--AACA--CA-TT-G-TTT-T-AA--CGA-TTGAAA-GAGTG--T-----TGTT--A----A----G-TTCAAA-T-GAA-CCGA-TC-AAATTGAGT-G-TTTA------CAGGT------GAAACTTAAATTa
gi|40 : agcaccaaaatgaaaaaactgaacataa-T-CAAA-T-GAA-CCAA-TC-AAATTGAGT-G-TTAC------AAAta
gi|5 : AAC-----AGACCAGAACG--CAA-TGT-----GGA--CGTCATAA--TTA---GAACGTCA-TATTGG---T----GGG--A-AT--A--------AATG--GGCAA-CATTT-C-TTT-A-TA--C-A-TGTA----AATG--TG----TGCCAAA----A----G-T--AAC-T-GAA-ACAATTC-AAACTGCAT-G-TTA
gi|6 : ccaaaatgaaaactgAAC-----A---TA-AAAG--TAT-TGT-----G-AATCGTCCTTAGACAA---GAACGTCA--A-TAGTCGC----GGG--A-CT--AC-------A--G--AACAAACA-TT-G-TTTTA-AA--CGA-TGTAAA-GAGTG--T-----T-TT--A----A----G-T-CAAAAT-GAATCCGA-TC-AAATTGAGTGG-TTAC------attattttggaact
gi|7 : aatgcaaacactgAAAG-----AG-TCAGAACG--CGT-TGT-----G-A--CGTCATAA--TTA---GAACATTA-TAACAC---C----GGG--A-CT--G--------A--G--GGTAG-CA-TT-G-TTT-A-TA--CGG-TATAAA-GAATG--T-----TGAT--A----C----G-T-CAAA-T-GAA-GCAA-TC-AGATTGCGT-G-TTAC------CAGGT------GAAA-TTGAATCAggtaaa
gi|8 : actcGAAACCAAGGAG-TCA-AATG--TAT-CGT-----G-A--CTTTAATC--ATA---GGGCATTA-TA-T----------GGT--A-TT--A--------A---------A-CT-TT-G-TTT-A-TA--TGA-TATGAATGAATA--T-----CGAT--A----AA---G-T-CAAA-T-GAA-CCAA-TC-ACAT---------------------GT------GAAT-TTAAATTA
gi|9 : gAAC-----AG-CCA-AACG--TACATGTAATTTG-A--TGTCATTC--CTG---AAACATCA-TA-TAG---CTAGCAGG--A-CT--ACACTGTAAA--A--GGCAA-CT-TT-G-TTT-A-TA--TGA-TATAAtttatggaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATATTGCCATAGCAACAAAATGGAAACTGCATGAACAACCAAACATATTGTGA
Unaligned ( gi|36 ): GATGTACATGTGGGGTACCGAAATCTGCCGATTGGTTT
Alignments
lowQualScore : 11111 1111 2222222222222222
lowQualScore : 1 3 6 0 44 2 11111 2 33 666 555 2 0000 333 33 2 2222222222222222 2 2 2 2 2 6 2 1 22 1 1 22 55555 2 444 222 1 1 1 1 1 1 2 2 1 22 666666 1
lowQualScore : . . . . .. . ..... . .. ... ... . .... ... .. . ................ . . . . . . . . .. . . .. ..... . ... ... . . . . . . . . . .. ...... .
lowQualScore : 0 3 2 2 22 9 11111 9 99 333 000 7 3333 999 11 2 0000000000000000 4 4 4 2 1 3 0 9 55 7 5 11 44444 9 444 888 4 4 3 3 3 3 7 8 4 22 777777 8
consensus : ACCCGAACAG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTA---GAACGTCA-TA----TAG---CGGG--A-CT--------A-A--G--GG-CAA-C-A-TT-G-TTT-A-TACG--A-TATAAA-GAATG--T-----TGCTA---A---AGTCAAA-T-GAA-CCAA-TC-AAATTGCGT-G-TTA-C-AAG--T------GAAA-TTAAATTA
Reference ( family-52 ) : ACCNAAACAG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTA---GAACGTCA-TA----TAG---CGGG--A-CT--------A-A--G--GG-CAA-C-A-TT-G-TTT-A-TACG--A-TATAAA-GAATG--T-----TGCTA---A---AGTCAAA-T-GAA-CCAA-TC-AAATTGCGT-G-TTA-C-AAG--T------GAAA-TTAAATTA
gi|1 : CTGAACAG-TCA-AAAG--AAC-TGT-----G-A--CGCCTTTT--CTT---GAACGTAA-TA----TAG---CGGG--A-CT--------A-A--A--AGACAA-TTA-TT-G-TTT-A-TACA--A-TATGAA-GGATG--T-----TGATG---A---AATCGAT-T-GAA-CCAA-TC-AAACTGTGT-G-TTA-CTAAA--TCATTTGGAAA-TTAA
gi|10 : tatcccgacttactttatatcgtataaaaataataagtattacattcattccttataataatttttaataacttgccttggacatcaaaatcatgaaaatggaaaAC-TGT-----G-A--CATCATTT--CTA---GGCTGTCA-TA----TAA---TGGG--G-CC--------A-A--AT-GG-CAA-C-T-TT-G-TTT-A-TAAC--A-TATAAA-GAATG--T-----AGAGA---A---A--TATA-T-GTA-C----TC-AAAGTGTGT-A-Tttctaatg
gi|11 : -G-TTT-A-TACG--A-TATAAA-GAATG--T-----TGATG---A---AGTTATA-T-GAA-CTAA-TCAAAATTGCAT-G--TG-C-AAGCAT------GGAA-atatta
gi|12 : tggatgtacatgtgggtaccgaaatctgccgatttgCTGAACAA-CCA-ATCG--TAT-TAT-----G-A--CCTCATTC--CTATCTGAACGTCA-TA----TAG---CTGG--G-TT--------A-
gi|13 : ttctatatgtaagggatcaatattgtagcaaaaaaaatatagaaaCAGAACAG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTG---GGACCTCCTTA----TAG---CGGG--A-CC--------A-A--AACGG-CAA-C-T-TT-G-TAT-A-CTCG--A-TAT
gi|14 : gtcaaaatggtaa----TAG---CGGG--A-CTTG------A-G--A--GG-CAA-C-A-TT-G-TTT-AATACG--GGTATAAA-GAATTCTT-----TGCTA---A---AGTCAAA-T-GAA-CTAA-TC-AGATTACGT-G-TTA-C-AAG--T---------A-TCAAATtgttg
gi|15 : TCA-TA----TAG---CGGG--A-CT--------A-AA-G--GG-CAA-C-A-T-------------A--A-TGTACA-GAATG--T-----TGCTA---A---GGTCAAA-A-GAA-TCAA-TC-AAATAGCAA-G-TTA-C-AAG--
gi|16 : AAACAG-TCA-AACGAATAT-TGT-----G-A--CGTCATAC--CTA---GAACATCA-TG----TAA---CGGG--A-CTG-------A-A--G--GG-CAA-C-A-CT-GTTTT-A-TACG--A-TACAAA-catcatgtaaaatca
gi|17 : agcaaaatgaAACAG-TCA-AACA--CAT-TGT-----G-A--AGTCATAA--TTA---GAACGGCA-TA----TAG---CGGG--ACCT--------C-A--G--GG-CAA-C-A-TT-GTTTT-A-TACG--G-TATAAA-
gi|18 : caaaatgaaattc-TC-G-TTT-A-TACG--A-TATGAC-TAATG--TACAAGTGATA---A---AGTTGAA-T-AAA-CCAA-TC-AAACTGCAT-G-TTA-C-A
gi|19 : ctagaaggtt-TATAAA-GAATG--T-----AGCTA---A---AGTCAAA-T-GAA-GCAT-TA-AGATTGTGT-G-TTA-C-AAG--T------GAAA-TTAAATTAtg
gi|2 : cgACCTAAAGAT-TGA-AA----TAT-CGTTT---G-A--CATTATTT--CTT---TAGCATCA-TA----TAG---CGAA--A-CT--------A-A--A--CG-CCA-A-A-TTTG-TTA-A-TGTG--A-TATATA-GACTG--T-----TGTTA---A---AGTCAAA-T-GAA-CAGA-AC-AAACTGCGT-G-CTA-C-AAT--T------AGAA-TTAAt
gi|20 : tgttccaatgtattcaatatcgtttaaattagtttcatttcttacgatccaatttagcaaactgggacctacatgcatttcaccgtgggaataatatgggAAA-TAATG--T-----TGCTA---A---AGTCAGA-TTGGA-CCAA-TC-AAAATGCGC-G-TTA-C-AAG--TA-----AAAA-TTAAATTAttcaa
gi|21 : -A-TACG--G-CATATA-GAATG--T-----TG-----------ATCAAA-T-GGA-CCAA-TC-AGATTGCGT-G-TTA-C-AAG--T------GAAA-ATGAATTAttc
gi|22 : -TATAAA-GAATG--T-----TGCTA---ATAAAGTCAAA-T-GAA-CCAA-TC-AGATTGCGT-G-TTA-C-AAA--T------GAAA-TTAAA
gi|23 : -GAATG--T-----TGCTATTAA---AGTCAAA-T-GAA-CCAA-TC-AAATTTAGT-G-TTA-C-AAG--T------AAAA-TTAAGTTA
gi|24 : at-TACG--A-TATAAA-GAATG--T-----TGATG---A---AGTTATA-T-GAA-CTAA-TC-AAATTGCAT-G-TTG-C-AAG--
gi|25 : ACG--A-TATAAA-GAATG--T-----TGATA---A---AATCAAA-T-GAA-CCAA-TC-AAATTACGT-G-TTA---AAG--T------catgga
gi|26 : aAAA-GAATG--T-----TTCTA---A---AGTCAAA-T-GAT-CCAA-TC-CAATTGCGT-G-CTA-C-AAG--T------GAAA-TTGAATtata
gi|27 : AA-TAATG--C-----TATTA---A---AGTCAAA-T-GAA-CCAA-TC-AGATTGCGT-G-TTA-C-AAA--T------GAAA-TAAAA
gi|28 : gTG--T-----TTCTA---A---AGTCAAA-T-GAT-CCAA-TC-CAATTGCGT-GCCTACC-AAG--T------GAAA-TTGAAT
gi|29 : ---CGGG--A-CTT-------G-A--G--AG-CAA-C-A-TC-G-TTT---TAAGCTG-TATAAA-GAATG--A-----TGCTC---A---AGTCAAA-
gi|3 : CTGAACTG-TCG-AACA--TAT-TGT-----G-A--AGTCATTC--CTG---GAATATCA-TA----TAG---CGGG--A-CT--------A-A--AC-AG-CAA-T-A--T-G-TTA-A-TATG--A-TATAAA-GAATG--T-----T
gi|31 : tgtccaaaattactttatatcgtatgcattgataaaaaatatttttagtagctgtaaactgcatttactctattgacatggaccaatattgtcactgcaacaaaatagaaa--T-----TGCTAC--A---AGTCAAA-T-GAA-CCAG-TC-AAATTGAGT-G-TTA-C-AAG--T------AAAA-TAAAA
gi|32 : A-GAATG--T-----TCCTA---A---AGTCAAA-T-GAA-CTAA-CC-AGATTGCGT-G-TTA-C-AAG--T------AAAA-a
gi|33 : TCAAA-T-GAG-CCAA-TC-AAATTGAGT-G-CTA-C-AAG--T------GAAA-TTACATTA
gi|34 : AA-T-GAA-CCAA-TC-AGATTGCGT-G-TTA-C-AAG--A------AAAA-TTAAAT
gi|35 : AAA-T-GAA-CCAA-TC-AGATTGCAT-G-TTA-C-AAG--T------TAAA-TTA
gi|37 : G---CGAT--A-CTT-------G-A--G--GG-CAA-C-A-TT-GTTTT-A-TACG--G-TATAt
gi|38 : -GAA-CCAA-TC-AAATTGAGT-G-TTA-C-AAG--T------AAAA-TTCAA
gi|39 : AA-CCAA-TC-AAATTGAGT-G-TTA-C-AAG--T------AAGA-
gi|4 : A-AATA--TAT-TG--------A--CGTC-TTA--ACA---GAACGTCA-TA----TCG---CGGGCAA-CT--------ACA--G--AA-CA--C-A-TT-G-TTT-T-AACG--A-TTGAAA-GAGTG--T-----TGTTA---A---GTTCAAA-T-GAA-CCGA-TC-AAATTGAGT-GTTTA-C-AGG--T------GAAACTTAAATTa
gi|40 : agcaccaaaatgaaaaaactgaacataaTCAAA-T-GAA-CCAA-TC-AAATTGAGT-G-TTA-C-AAta
gi|5 : CTGAACAGACCAGAACG--CAA-TGT-----GGA--CGTCATAA--TTA---GAACGTCA-TAT---TGG---TGGG--A-AT--------A-AATG--GG-CAA-C-ATTT-C-TTT-A-TAC---A-TGTA----AATG--TG----TGCCA---A---AAGTAAC-T-GAA-ACAATTC-AAACTGCAT-G-TTA-a
gi|6 : ccaaaatgaaaaCTGAACA---TA-AAAG--TAT-TGT-----G-AATCGTCCTTAGACAA---GAACGTCA--A----TAGTCGCGGG--A-CT--------ACA--G--AA-CAAAC-A-TT-G-TTTTA-AACG--A-TGTAAA-GAGTG--T-----T--TT---A---AGTCAAAAT-GAATCCGA-TC-AAATTGAGTGG-TTA-C-attattttggaact
gi|7 : aatgcaaacaACTCAAAGAG-TCAGAACG--CGT-TGT-----G-A--CGTCATAA--TTA---GAACATTA-TAA---CAC---CGGG--A-CT--------G-A--G--GG-TAG-C-A-TT-G-TTT-A-TACG--G-TATAAA-GAATG--T-----TGAT----A---CGTCAAA-T-GAA-GCAA-TC-AGATTGCGT-G-TTACC-AGG--T------GAAA-TTGAATCAggtaaa
gi|8 : CCAAGGAG-TCA-AATG--TAT-CGT-----G-A--CTTTAATC--ATA---GGGCATTA-TA----T------GGT--A-TT--------A-A----------A-C-T-TT-G-TTT-A-TATG--A-TATGAATGAATA--T-----CGATA---A---AGTCAAA-T-GAA-CCAA-TC-ACAT----------------G--T------GAAT-TTAAATTA
gi|9 : ggaaaAACAG-CCA-AACG--TACATGTAATTTG-A--TGTCATTC--CTG---AAACATCA-TATAGCTAG---CAGG--A-CTACACTGTAA-A--A--GG-CAA-C-T-TT-G-TTT-A-TATG--A-TATAAtttatggaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATATTGCCATAGCAACAAAATGGAAACTGCATGAACAACCAAACATATTGTGA
Unaligned ( gi|36 ): GATGTACATGTGGGGTACCGAAATCTGCCGATTGGTTT
Alignments
lowQualScore : 11111 1111 2222222222222222
lowQualScore : 1 3 6 0 44 2 11111 2 33 666 555 2 0000 333 33 2 2222222222222222 2 2 2 2 2 6 2 1 22 1 1 22 55555 2 444 222 1 1 1 1 1 1 2 2 1 22 666666 1
lowQualScore : . . . . .. . ..... . .. ... ... . .... ... .. . ................ . . . . . . . . .. . . .. ..... . ... ... . . . . . . . . . .. ...... .
lowQualScore : 2 1 2 2 22 9 11111 9 99 333 000 7 3333 999 11 2 0000000000000000 4 4 4 2 1 3 0 9 55 7 5 11 44444 9 444 888 4 4 3 3 3 3 7 8 4 22 777777 8
consensus : ACCCGAACAG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTA---GAACGTCA-TA----TAG---CGGG--A-CT--------A-A--G--GG-CAA-C-A-TT-G-TTT-A-TACG--A-TATAAA-GAATG--T-----TGCTA---A---AGTCAAA-T-GAA-CCAA-TC-AAATTGCGT-G-TTA-C-AAG--T------GAAA-TTAAATTA
Reference ( family-52 ) : ACCCGAACAG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTA---GAACGTCA-TA----TAG---CGGG--A-CT--------A-A--G--GG-CAA-C-A-TT-G-TTT-A-TACG--A-TATAAA-GAATG--T-----TGCTA---A---AGTCAAA-T-GAA-CCAA-TC-AAATTGCGT-G-TTA-C-AAG--T------GAAA-TTAAATTA
gi|1 : CTGAACAG-TCA-AAAG--AAC-TGT-----G-A--CGCCTTTT--CTT---GAACGTAA-TA----TAG---CGGG--A-CT--------A-A--A--AGACAA-TTA-TT-G-TTT-A-TACA--A-TATGAA-GGATG--T-----TGATG---A---AATCGAT-T-GAA-CCAA-TC-AAACTGTGT-G-TTA-CTAAA--TCATTTGGAAA-TTAA
gi|10 : tatcccgacttactttatatcgtataaaaataataagtattacattcattccttataataatttttaataacttgccttggacatcaaaatcatgaaaatggaaaAC-TGT-----G-A--CATCATTT--CTA---GGCTGTCA-TA----TAA---TGGG--G-CC--------A-A--AT-GG-CAA-C-T-TT-G-TTT-A-TAAC--A-TATAAA-GAATG--T-----AGAGA---A---A--TATA-T-GTA-C----TC-AAAGTGTGT-A-Tttctaatg
gi|11 : -G-TTT-A-TACG--A-TATAAA-GAATG--T-----TGATG---A---AGTTATA-T-GAA-CTAA-TCAAAATTGCAT-G--TG-C-AAGCAT------GGAA-atatta
gi|12 : tggatgtacatgtgggtaccgaaatctgccgatttgCTGAACAA-CCA-ATCG--TAT-TAT-----G-A--CCTCATTC--CTATCTGAACGTCA-TA----TAG---CTGG--G-TT--------A-
gi|13 : ttctatatgtaagggatcaatattgtagcaaaaaaaatatagaaaGAACAG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTG---GGACCTCCTTA----TAG---CGGG--A-CC--------A-A--AACGG-CAA-C-T-TT-G-TAT-A-CTCG--A-TAT
gi|14 : gtcaaaatggtaaca----TAG---CGGG--A-CTTG------A-G--A--GG-CAA-C-A-TT-G-TTT-AATACG--GGTATAAA-GAATTCTT-----TGCTA---A---AGTCAAA-T-GAA-CTAA-TC-AGATTACGT-G-TTA-C-AAG--T---------A-TCAAATtgttg
gi|15 : TCA-TA----TAG---CGGG--A-CT--------A-AA-G--GG-CAA-C-A-T-------------A--A-TGTACA-GAATG--T-----TGCTA---A---GGTCAAA-A-GAA-TCAA-TC-AAATAGCAA-G-TTA-C-AAG--
gi|16 : AACAG-TCA-AACGAATAT-TGT-----G-A--CGTCATAC--CTA---GAACATCA-TG----TAA---CGGG--A-CTG-------A-A--G--GG-CAA-C-A-CT-GTTTT-A-TACG--A-TACAAA-catcatgtaaaatca
gi|17 : agcaaaatgaaAACAG-TCA-AACA--CAT-TGT-----G-A--AGTCATAA--TTA---GAACGGCA-TA----TAG---CGGG--ACCT--------C-A--G--GG-CAA-C-A-TT-GTTTT-A-TACG--G-TATAAA-
gi|18 : caaaatgaaattc-TC-G-TTT-A-TACG--A-TATGAC-TAATG--TACAAGTGATA---A---AGTTGAA-T-AAA-CCAA-TC-AAACTGCAT-G-TTA-C-A
gi|19 : ctagaaggtt-TATAAA-GAATG--T-----AGCTA---A---AGTCAAA-T-GAA-GCAT-TA-AGATTGTGT-G-TTA-C-AAG--T------GAAA-TTAAATTAtg
gi|2 : cgACCTAAAGAT-TGA-AA----TAT-CGTTT---G-A--CATTATTT--CTT---TAGCATCA-TA----TAG---CGAA--A-CT--------A-A--A--CG-CCA-A-A-TTTG-TTA-A-TGTG--A-TATATA-GACTG--T-----TGTTA---A---AGTCAAA-T-GAA-CAGA-AC-AAACTGCGT-G-CTA-C-AAT--T------AGAA-TTAAt
gi|20 : tgttccaatgtattcaatatcgtttaaattagtttcatttcttacgatccaatttagcaaactgggacctacatgcatttcaccgtgggaataatatgggAAA-TAATG--T-----TGCTA---A---AGTCAGA-TTGGA-CCAA-TC-AAAATGCGC-G-TTA-C-AAG--TA-----AAAA-TTAAATTAttcaa
gi|21 : -A-TACG--G-CATATA-GAATG--T-----TG-----------ATCAAA-T-GGA-CCAA-TC-AGATTGCGT-G-TTA-C-AAG--T------GAAA-ATGAATTAttc
gi|22 : -TATAAA-GAATG--T-----TGCTA---ATAAAGTCAAA-T-GAA-CCAA-TC-AGATTGCGT-G-TTA-C-AAA--T------GAAA-TTAAA
gi|23 : -GAATG--T-----TGCTATTAA---AGTCAAA-T-GAA-CCAA-TC-AAATTTAGT-G-TTA-C-AAG--T------AAAA-TTAAGTTA
gi|24 : at-TACG--A-TATAAA-GAATG--T-----TGATG---A---AGTTATA-T-GAA-CTAA-TC-AAATTGCAT-G-TTG-C-AAG--
gi|25 : ACG--A-TATAAA-GAATG--T-----TGATA---A---AATCAAA-T-GAA-CCAA-TC-AAATTACGT-G-TTA---AAG--T------catgga
gi|26 : aAAA-GAATG--T-----TTCTA---A---AGTCAAA-T-GAT-CCAA-TC-CAATTGCGT-G-CTA-C-AAG--T------GAAA-TTGAATtata
gi|27 : AA-TAATG--C-----TATTA---A---AGTCAAA-T-GAA-CCAA-TC-AGATTGCGT-G-TTA-C-AAA--T------GAAA-TAAAA
gi|28 : gTG--T-----TTCTA---A---AGTCAAA-T-GAT-CCAA-TC-CAATTGCGT-GCCTACC-AAG--T------GAAA-TTGAAT
gi|29 : ---CGGG--A-CTT-------G-A--G--AG-CAA-C-A-TC-G-TTT---TAAGCTG-TATAAA-GAATG--A-----TGCTC---A---AGTCAAA-
gi|3 : CTGAACTG-TCG-AACA--TAT-TGT-----G-A--AGTCATTC--CTG---GAATATCA-TA----TAG---CGGG--A-CT--------A-A--AC-AG-CAA-T-A--T-G-TTA-A-TATG--A-TATAAA-GAATG--T-----T
gi|31 : tgtccaaaattactttatatcgtatgcattgataaaaaatatttttagtagctgtaaactgcatttactctattgacatggaccaatattgtcactgcaacaaaatagaaa--T-----TGCTAC--A---AGTCAAA-T-GAA-CCAG-TC-AAATTGAGT-G-TTA-C-AAG--T------AAAA-TAAAA
gi|32 : A-GAATG--T-----TCCTA---A---AGTCAAA-T-GAA-CTAA-CC-AGATTGCGT-G-TTA-C-AAG--T------AAAA-a
gi|33 : TCAAA-T-GAG-CCAA-TC-AAATTGAGT-G-CTA-C-AAG--T------GAAA-TTACATTA
gi|34 : AA-T-GAA-CCAA-TC-AGATTGCGT-G-TTA-C-AAG--A------AAAA-TTAAAT
gi|35 : AAA-T-GAA-CCAA-TC-AGATTGCAT-G-TTA-C-AAG--T------TAAA-TTA
gi|37 : G---CGAT--A-CTT-------G-A--G--GG-CAA-C-A-TT-GTTTT-A-TACG--G-TATAt
gi|38 : -GAA-CCAA-TC-AAATTGAGT-G-TTA-C-AAG--T------AAAA-TTCAA
gi|39 : AA-CCAA-TC-AAATTGAGT-G-TTA-C-AAG--T------AAGA-
gi|4 : CTGAACAT-AAA-AATA--TAT-TG--------A--CGTC-TTA--ACA---GAACGTCA-TA----TCG---CGGGCAA-CT--------ACA--G--AA-CA--C-A-TT-G-TTT-T-AACG--A-TTGAAA-GAGTG--T-----TGTTA---A---GTTCAAA-T-GAA-CCGA-TC-AAATTGAGT-GTTTA-C-AGG--T------GAAACTTAAATTa
gi|40 : agcaccaaaatgaaaaaaTCAAA-T-GAA-CCAA-TC-AAATTGAGT-G-TTA-C-AAta
gi|5 : CTGAACAGACCAGAACG--CAA-TGT-----GGA--CGTCATAA--TTA---GAACGTCA-TAT---TGG---TGGG--A-AT--------A-AATG--GG-CAA-C-ATTT-C-TTT-A-TAC---A-TGTA----AATG--TG----TGCCA---A---AAGTAAC-T-GAA-ACAATTC-AAACTGCAT-G-TTA-a
gi|6 : ccaaaatgaaaaCTGAACA---TA-AAAG--TAT-TGT-----G-AATCGTCCTTAGACAA---GAACGTCA--A----TAGTCGCGGG--A-CT--------ACA--G--AA-CAAAC-A-TT-G-TTTTA-AACG--A-TGTAAA-GAGTG--T-----T--TT---A---AGTCAAAAT-GAATCCGA-TC-AAATTGAGTGG-TTA-C-attattttggaact
gi|7 : aatgcaaacaACTCAAAGAG-TCAGAACG--CGT-TGT-----G-A--CGTCATAA--TTA---GAACATTA-TAA---CAC---CGGG--A-CT--------G-A--G--GG-TAG-C-A-TT-G-TTT-A-TACG--G-TATAAA-GAATG--T-----TGAT----A---CGTCAAA-T-GAA-GCAA-TC-AGATTGCGT-G-TTACC-AGG--T------GAAA-TTGAATCAggtaaa
gi|8 : CCAAGGAG-TCA-AATG--TAT-CGT-----G-A--CTTTAATC--ATA---GGGCATTA-TA----T------GGT--A-TT--------A-A----------A-C-T-TT-G-TTT-A-TATG--A-TATGAATGAATA--T-----CGATA---A---AGTCAAA-T-GAA-CCAA-TC-ACAT----------------G--T------GAAT-TTAAATTA
gi|9 : ggaaaCGAACAG-CCA-AACG--TACATGTAATTTG-A--TGTCATTC--CTG---AAACATCA-TATAGCTAG---CAGG--A-CTACACTGTAA-A--A--GG-CAA-C-T-TT-G-TTT-A-TATG--A-TATAAtttatggaa
blockSeqs : T A G AA A AATTT G AT AGA TCT T TAGC TCG CA C ACACTGTAAAA . A . T T T T A CT G T CT ACAAG A TTA TAA A T T T A G C C . CA A C
blockSeqs : T . G . . TT . . T . . T . . . AAAAC . . . . . T . . . . . . G A C . . . . . . . T C . . . .
blockSeqs : T . . . . . . . C . . A . . . TGAGA . . . . . T . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . C . . . . . . AAATG . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . C . . . . . . AAAT . . . . . . . . . . . . . A . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . A . . . . . . AAAG . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : C . . . . . . . T . . . . . . GAAG . . . . . . . . . . . . . T . . . . . . . . . . . . . .
blockSeqs : C . . . . . . . C . . . . . . TGAG . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : C . . . . . . . A . . . . . . AAAC . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . TGAG . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . ACAG . . . . . . . . . . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . C . . . . . . ACAG . . . . . . . . . . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . CAG . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . AAA . . . . . . . . . . . . . T . . . . . . . . . . . . . .
blockSeqs : . . . . GAG . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . AA . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : AAAG************ ******
originalCons : ACCCGAACAG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTA---GAACGTCA-TA----TAG---CGGG--A-CT--------A-A--G--GG-CAA-C-A-TT-G-TTT-A-TACG--A-TATAAA-GAATG--T-----TGCTA---A---AGTCAAA-T-GAA-CCAA-TC-AAATTGCGT-G-TTA-C-AAG--T------GAAA-TTAAATTA
finalCons : ACCCGAACAG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTA---GAACGTCA-TA----TAG---CGGG--A-CTAAAG------------GG-CAA-C-A-TT-G-TTT-A-TACG--A-TATAAA-GAATG--T-----TGCTA---A---AGTCAAA-T-GAA-CCAA-TC-AAATTGCGT-G-TTA-C-AAG--T------GAAA-TTAAATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATATTGCCATAGCAACAAAATGGAAACTGCATGAACAACCAAACATATTGTGA
Unaligned ( gi|36 ): GATGTACATGTGGGGTACCGAAATCTGCCGATTGGTTT
Alignments
lowQualScore : 11111
lowQualScore : 1 3 6 0 44 2 11111 2 33 666 555 2 2 2 333 4444 33 77777777 777 2 333 6 2 1 22 1 1 22 55555 2 444 222 1 1 1 1 1 1 2 2 1 22 666666 1
lowQualScore : . . . . .. . ..... . .. ... ... . . . ... .... .. ........ ... . ... . . . .. . . .. ..... . ... ... . . . . . . . . . .. ...... .
lowQualScore : 2 1 2 2 22 9 11111 9 99 333 000 7 7 5 999 7777 11 66666666 222 4 222 3 0 9 55 7 5 11 44444 9 444 888 4 4 3 3 3 3 7 8 4 22 777777 8
consensus : ACCCGAACAG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTA---GAACGTCA-T-A-TAG---C----GGG--ACTA-------AA-G-GGCAA-C-A-TTG-TTT-A-TACG--A-TATAAA-GAATG--T-----TGCTA---A---AGTCAAA-T-GAA-CCAA-TC-AAATTGCGT-G-TTA-C-AAG--T------GAAA-TTAAATTA
Reference ( family-52 ) : ACCCGAACAG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTA---GAACGTCA-T-A-TAG---C----GGG--ACTA-------AA-G-GGCAA-C-A-TTG-TTT-A-TACG--A-TATAAA-GAATG--T-----TGCTA---A---AGTCAAA-T-GAA-CCAA-TC-AAATTGCGT-G-TTA-C-AAG--T------GAAA-TTAAATTA
gi|1 : CTGAACAG-TCA-AAAG--AAC-TGT-----G-A--CGCCTTTT--CTT---GAACGTAA-T-A-TAG---C----GGG--ACTA-------AA-A-GACAA-TTA-TTG-TTT-A-TACA--A-TATGAA-GGATG--T-----TGATG---A---AATCGAT-T-GAA-CCAA-TC-AAACTGTGT-G-TTA-CTAAA--TCATTTGGAAA-TTAA
gi|10 : tatcccgacttactttatatcgtataaaaataataagtattacattcattccttataataatttttaataacttgccttggacatcaaaatcatgaaaatggaaaAC-TGT-----G-A--CATCATTT--CTA---GGCTGTCA-T-A-TAA---T----GGG--GCCA-------AA-T-GGCAA-C-T-TTG-TTT-A-TAAC--A-TATAAA-GAATG--T-----AGAGA---A---A--TATA-T-GTA-C----TC-AAAGTGTGT-A-Tttctaatg
gi|11 : G-TTT-A-TACG--A-TATAAA-GAATG--T-----TGATG---A---AGTTATA-T-GAA-CTAA-TCAAAATTGCAT-G--TG-C-AAGCAT------GGAA-atatta
gi|12 : tggatgtacatgtgggtaccgaaatctgccgatttgCTGAACAA-CCA-ATCG--TAT-TAT-----G-A--CCTCATTC--CTATCTGAACGTCA-T-A-TAG---C----TGG--GTTA-------
gi|13 : ttctatatgtaagggatcaatattgtagcaaaaaaaatatagaaaGAACAG-TCA-AACG--TAT-TGT-----G-A--CGTCATTC--CTG---GGACCTCCTT-A-TAG---C----GGG--ACCA-------AA-ACGGCAA-C-T-TTG-TAT-A-CTCG--A-TAT
gi|14 : gtcaaaatggtaaca-TAG---C----GGG--ACTT-------GA-GAGGCAA-C-A-TTG-TTT-AATACG--GGTATAAA-GAATTCTT-----TGCTA---A---AGTCAAA-T-GAA-CTAA-TC-AGATTACGT-G-TTA-C-AAG--T---------A-TCAAATtgttg
gi|15 : TCA-T-A-TAG---C----GGG--ACTA-------AA-G-GGCAA-C-A-T------------A--A-TGTACA-GAATG--T-----TGCTA---A---GGTCAAA-A-GAA-TCAA-TC-AAATAGCAA-G-TTA-C-AAG--
gi|16 : AACAG-TCA-AACGAATAT-TGT-----G-A--CGTCATAC--CTA---GAACATCA-T-G-TAA---C----GGG--ACTG-------AA-G-GGCAA-C-A-CTGTTTT-A-TACG--A-TACAAA-catcatgtaaaatca
gi|17 : agcaaaatgaaAACAG-TCA-AACA--CAT-TGT-----G-A--AGTCATAA--TTA---GAACGGCA-T-A-TAG---C----GGG--ACCT-------CA-G-GGCAA-C-A-TTGTTTT-A-TACG--G-TATAAA-
gi|18 : caaaatgaaattc-TCG-TTT-A-TACG--A-TATGAC-TAATG--TACAAGTGATA---A---AGTTGAA-T-AAA-CCAA-TC-AAACTGCAT-G-TTA-C-A
gi|19 : ctagaaggtt-TATAAA-GAATG--T-----AGCTA---A---AGTCAAA-T-GAA-GCAT-TA-AGATTGTGT-G-TTA-C-AAG--T------GAAA-TTAAATTAtg
gi|2 : cgACCTAAAGAT-TGA-AA----TAT-CGTTT---G-A--CATTATTT--CTT---TAGCATCA-T-A-TAG---C----GAA--ACTA-------AA-C-GCCAA-A-T-TTG-TTA-A-TGTG--A-TATATA-GACTG--T-----TGTTA---A---AGTCAAA-T-GAA-CAGA-AC-AAACTGCGT-G-CTA-C-AAT--T------AGAA-TTAAt
gi|20 : tgttccaatgtattcaatatcgtttaaattagtttcatttcttacgatccaatttagcaaactgggacctacatgcatttcaccgtgggaataatatgggAAA-TAATG--T-----TGCTA---A---AGTCAGA-TTGGA-CCAA-TC-AAAATGCGC-G-TTA-C-AAG--TA-----AAAA-TTAAATTAttcaa
gi|21 : -A-TACG--G-CATATA-GAATG--T-----TG-----------ATCAAA-T-GGA-CCAA-TC-AGATTGCGT-G-TTA-C-AAG--T------GAAA-ATGAATTAttc
gi|22 : -TATAAA-GAATG--T-----TGCTA---ATAAAGTCAAA-T-GAA-CCAA-TC-AGATTGCGT-G-TTA-C-AAA--T------GAAA-TTAAA
gi|23 : -GAATG--T-----TGCTATTAA---AGTCAAA-T-GAA-CCAA-TC-AAATTTAGT-G-TTA-C-AAG--T------AAAA-TTAAGTTA
gi|24 : at-TACG--A-TATAAA-GAATG--T-----TGATG---A---AGTTATA-T-GAA-CTAA-TC-AAATTGCAT-G-TTG-C-AAG--
gi|25 : ACG--A-TATAAA-GAATG--T-----TGATA---A---AATCAAA-T-GAA-CCAA-TC-AAATTACGT-G-TTA---AAG--T------catgga
gi|26 : aAAA-GAATG--T-----TTCTA---A---AGTCAAA-T-GAT-CCAA-TC-CAATTGCGT-G-CTA-C-AAG--T------GAAA-TTGAATtata
gi|27 : AA-TAATG--C-----TATTA---A---AGTCAAA-T-GAA-CCAA-TC-AGATTGCGT-G-TTA-C-AAA--T------GAAA-TAAAA
gi|28 : gTG--T-----TTCTA---A---AGTCAAA-T-GAT-CCAA-TC-CAATTGCGT-GCCTACC-AAG--T------GAAA-TTGAAT
gi|29 : ---C----GGG--ACTT-------GA-G-AGCAA-C-A-TCG-TTT---TAAGCTG-TATAAA-GAATG--A-----TGCTC---A---AGTCAAA-
gi|3 : CTGAACTG-TCG-AACA--TAT-TGT-----G-A--AGTCATTC--CTG---GAATATCA-T-A-TAG---C----GGG--ACTA-------AA-C-AGCAA-T-A--TG-TTA-A-TATG--A-TATAAA-GAATG--T-----T
gi|31 : tgtccaaaattactttatatcgtatgcattgataaaaaatatttttagtagctgtaaactgcatttactctattgacatggaccaatattgtcactgcaacaaaatagaaa--T-----TGCTAC--A---AGTCAAA-T-GAA-CCAG-TC-AAATTGAGT-G-TTA-C-AAG--T------AAAA-TAAAA
gi|32 : A-GAATG--T-----TCCTA---A---AGTCAAA-T-GAA-CTAA-CC-AGATTGCGT-G-TTA-C-AAG--T------AAAA-a
gi|33 : TCAAA-T-GAG-CCAA-TC-AAATTGAGT-G-CTA-C-AAG--T------GAAA-TTACATTA
gi|34 : AA-T-GAA-CCAA-TC-AGATTGCGT-G-TTA-C-AAG--A------AAAA-TTAAAT
gi|35 : AAA-T-GAA-CCAA-TC-AGATTGCAT-G-TTA-C-AAG--T------TAAA-TTA
gi|37 : G---C----GAT--ACTT-------GA-G-GGCAA-C-A-TTGTTTT-A-TACG--G-TATAt
gi|38 : -GAA-CCAA-TC-AAATTGAGT-G-TTA-C-AAG--T------AAAA-TTCAA
gi|39 : AA-CCAA-TC-AAATTGAGT-G-TTA-C-AAG--T------AAGA-
gi|4 : CTGAACAT-AAA-AATA--TAT-TG--------A--CGTC-TTA--ACA---GAACGTCA-T-A-TCG---C----GGGCAACTA-------CA-G-AACA--C-A-TTG-TTT-T-AACG--A-TTGAAA-GAGTG--T-----TGTTA---A---GTTCAAA-T-GAA-CCGA-TC-AAATTGAGT-GTTTA-C-AGG--T------GAAACTTAAATTa
gi|40 : agcaccaaaatgaaaaaaTCAAA-T-GAA-CCAA-TC-AAATTGAGT-G-TTA-C-AAta
gi|5 : CTGAACAGACCAGAACG--CAA-TGT-----GGA--CGTCATAA--TTA---GAACGTCA-T-ATTGG---T----GGG--AATA-------AATG-GGCAA-C-ATTTC-TTT-A-TAC---A-TGTA----AATG--TG----TGCCA---A---AAGTAAC-T-GAA-ACAATTC-AAACTGCAT-G-TTA-a
gi|6 : ccaaaatgaaaaCTGAACA---TA-AAAG--TAT-TGT-----G-AATCGTCCTTAGACAA---GAACGTCA---A-TAGTCGC----GGG--ACTA-------CA-G-AACAAAC-A-TTG-TTTTA-AACG--A-TGTAAA-GAGTG--T-----T--TT---A---AGTCAAAAT-GAATCCGA-TC-AAATTGAGTGG-TTA-C-attattttggaact
gi|7 : aatgcaaacaACTCAAAGAG-TCAGAACG--CGT-TGT-----G-A--CGTCATAA--TTA---GAACATTA-TAA-CAC---C----GGG--ACT--------GA-G-GGTAG-C-A-TTG-TTT-A-TACG--G-TATAAA-GAATG--T-----TGAT----A---CGTCAAA-T-GAA-GCAA-TC-AGATTGCGT-G-TTACC-AGG--T------GAAA-TTGAATCAggtaaa
gi|8 : CCAAGGAG-TCA-AATG--TAT-CGT-----G-A--CTTTAATC--ATA---GGGCATTA-T-A-T----------GGT--ATTA-------AA---------C-T-TTG-TTT-A-TATG--A-TATGAATGAATA--T-----CGATA---A---AGTCAAA-T-GAA-CCAA-TC-ACAT----------------G--T------GAAT-TTAAATTA
gi|9 : ggaaaCGAACAG-CCA-AACG--TACATGTAATTTG-A--TGTCATTC--CTG---AAACATCA-T-A-TAG---CTAGCAGG--ACTACACTGTAAA-A-GGCAA-C-T-TTG-TTT-A-TATG--A-TATAAtttatggaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATATTGCCATAGCAACAAAATGGAAACTGCATGAACAACCAAACATATTGTGA
Unaligned ( gi|36 ): GATGTACATGTGGGGTACCGAAATCTGCCGATTGGTTT