lowQualScore : 11111111111111111 111111 1 11111 1111 4444444444444444444 1 1 111 11111 22 22222 111111 1111111 111 1111111 11 222222 11111 2222 1 111111 1 1 11111
lowQualScore : 33 0 0 2 2 33 3 66666666666666666 6 666 333 2 4 33 4 5 777777 999999 1 5 5 44444 5 5 5 3 0000 0 3 7 88 5 888 2222222222222222222 0 5 7 0 222 44444 0 44 5 5 3 44 8 5 66666 3 88888 66 2 2 333333 4 4 4 4444444 4 8 2 77 888 777 66 8888888 1 8 11 4 444444 0 4 4 4 0 55 88888 99 7777 9999 55 22 3 33 0 6 3 444444 44 6 0 555 11111 0 55555 4444 22 2 2 2 33
lowQualScore : .. . . . . .. . ................. . ... ... . . .. . . ...... ...... . . . ..... . . . . .... . . . .. . ... ................... . . . . ... ..... . .. . . . .. . . ..... . ..... .. . . ...... . . . ....... . . . .. ... ... .. ....... . . .. . ...... . . . . . .. ..... .. .... .... .. .. . .. . . . ...... .. . . ... ..... . ..... .... .. . . . ..
lowQualScore : 22 5 3 4 4 22 6 22222222222222222 7 999 999 2 5 44 4 0 111111 111111 9 0 0 99999 0 0 0 6 6666 1 2 6 44 0 888 9999999999999999999 0 9 0 1 888 66666 1 66 0 0 4 11 8 0 66666 8 22222 99 2 5 888888 4 4 4 4444444 4 9 9 00 999 888 11 4444444 9 9 66 4 333333 1 4 4 4 8 55 55555 55 8888 3333 55 00 6 66 8 8 3 666666 66 7 0 888 77777 5 33333 5555 99 2 2 5 44
consensus : CAGTTTAC--ACGCTCTGCTTTT-GCA-G--CTGCT--TTG----GN-GC---AG-A---G---CTGC-AAAAGCAGAGCGT--GTAAACTA-GG-G----C-TAT--GC--ACTGCAGACCTGCAA-GCAG-ACGAATTAGAACTTGCTCTATTTCAGT-CTGC-AAAGCAG-ACGTAAC----TGACCAATCAGCTTCAATTAAAAATGATAAATCAAAN-TATGG-GG---TGAN-TGT-AA--GTG-AA---AACAC-ACT-AAAACGAAGTA-AAATGGCTGGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACANCAA-AATAAGCTGANTTTATT-T-C-TCAT--GATGAACCACCTT-T---CCAG-ACCTTTGGAA-T-AC-------TT-TTT-AGCCTCCTATTC--AA---AA--GGG--TTG-CAGTCA-AAAA-NCCC-T-A----GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGC----AATTG-TTTTT---GTA-TA-AG--TATAAAAGTTAAT-GCTAATTGAGAGATAGCAGACATGGTAAGCAGAACGTGTAA-ACCC---C--A--GG-CT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AG--C-TG-CAAAAGCAGAGC-GT--GTAAACT
Reference ( gi|2 ) : CAGTTTAC--ACGCTCTGCTTTT-GCA-G--CTGCT--TTG----GT-GC---AG-A---G---CTGC-AAAAGAAGAGCGT--GTAAACTA-GG-G----T-TAT--GC--ACTGCAGAGCTGCAA-GCAG-ACGAGTTAGAACTTGCTCTAATTCAGT-CTGC-AAAGCAG-ACGTAAC----TGACCAATCAGCTTCAATTAAAAATGATAAATCAAAC-TATGG-GG---TGAC-TGT-AA--GTG-AA---AATAC-ACTAAAAACAAAGTC-AAATGACTAGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACACCAA-AATAAGCTGATTTTATT-T-C-TCAT--GATAAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTTTTATTT--AA---AA--GGG--TCG-TAGTCA-AAAA-TCCC-T-A----GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGC----GATTG-TTTTT---GTA-AT-AG--TATGAAAGTTAAT-GCTAATTGAGAGATAGCAAACATGGTAAGCAGAACGTGTAA-ACCC---T--A--GG-CT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AG--C-TG-CAAAAGCAGAGC-GT--GTAAACT
gi|8 : CAGGTTAC--AAGCTCTGCTTTT-GCC-G--CTGCT--TTA----AA-GC---AG-A---G---TTGC-AAAAGAAGGGCAT--GTAAACTA-GGAG----C-TAT--CT--AATGCAGACTTACAA-GCAA-ACGAAATAGAACTT-----ATTTCAGT-ATGC-AAAGCAG-ACGTAAC----TGACCAATCAGCTTCCAGTAAAAATGATAAATCAAAT-TATGG-GG---TGAA-TGTAAA--GTG-GA---AATAC-TCT-AAAACGAAGTA-AAATGGCTGGTAAAAAGAGAATATA-GAAA-TAACAACTG-ACTTTTGAACACCAA-AATAAACTGAATTTATT-TAT-TCAT--GATGAACCACCTT-T---CCAG-ACATTTGAAG-T-AC-------TT-TTTCAGCCTCCTGTTTAAAA---AA--GGA--CTG-TAGTTA-AAAA-GCCC-T-AC---GAAATA-TTTTAGATAAT-CT-CAAAATCAGAGATT--TGAGGGTTTGAAATAC------TT--TTTTT---ATATATAAG--CATAAAAGTTAAT-GCTAATTG
gi|10 : CAATTTAC--ACGCTCTGCTTTT-GCA-G--CTGCT--TT
gi|14 : ctgacctttgaaacactttttaacctcctattcaaaaaagggctgcagtcaaaaatcccttagtaatattgtagataaactcaaaatcagagatatgaggggttgaaatgcaattgttttgtataagtataaaagttattgctaattgagagagcgcagacatggtaagcagaatgtgtaaaccccaggtctgctttgcagagtaaagtgcagacctaaCAGTTTAC--ACG--ATGTTATT-GCG-G--CTGCT---------GT-TT---AG-G---C---CTGC-Ag
gi|13 : gtggtaagcaggacgtgtaaaccccatgccagttttgcagagtaaagCAGTTTAC--ACG--CTGTTTTTGGCG-G--CTGCT---------GT-TT---AG-G---C---CTGC-Aggct
gi|3 : cgtggaagcagacgtgtaataccccatgccagttttgtcagagtaaagAGTTTAC--ACGCTCTTCTTTT-GCA-G--CT-CT---------GC-ACCAAAGCA---G---CTGC-AAAAGCAGAGCG---GTAAAggc
gi|1 : aAGTTTAC--ACGCTCTGCTTTT-GCA-G--CCGTT--TTG----GT-GC---AG-A---G---CTGC-AAAAGAAGAGCGT--GTAAACTA-GG-G----T-TAT--GC--ACTGCAGACCTGCAA-GCAG-ACGAGTTAGAACTTGC----------T-CTGC-AAAGCAA-ACGTAAC----TGACCAATCAGCTTCAATTAAAAACTATAAATCAAGA-TATGG-GG---TGAA-TGT-AAG-GTGAAA---AAAAC-ACTTAAAACAAAGTA-AAATGGCTGATAAAAAGAAAATATA-GGAA-TAAAAACTT-ACTTCTGAACAGCAA-AATAAGCTGATGTTATT-TAT-TTAT--GATGAACCACCTT-T---CCAG-ACCTTTGGAA-C-AC-------TT-TTT-AACCTCCTATTCAAAA---AA--GGG--CTG-CAGTCA-AAAA-TCCCTT-A----ATAATA-TTGTAGATAAA-CT-CAAAATCAGAGGTA--TGAGGGGTTGAAATGC----AATTG--TTTT---GTA-TA-AG--TATAAAAGTTAAT-GCTAATTGAGAGAGAGCAGACATGGTAAGCAGAATGTGTAA-ACCC---C--A--GGTCT-GCTAAAGTGCAGGCCAGAGTAAAGTGCAGACCTAA-----AAAGC----AG--C-TG-CAAAAGCAGAGC-GT--GTAAATTagggtattgcactgcagagctgcaagcagacgagttagaacttgcttattcagtctgcaaagcagacgtactgaccaatcagcttcaattaaaatataaatcaaacttggggtgactgtaaggtgaaaatacactaaaacaaagtcaaatggctagtaaaggagaatataggaataaaaatgaacttctgaacaccaaaatagctgattttatttcttcatgataaaccacctttccagacctttgaaatactttttagccttttatttaaaagggtcgcagtcataaaatccttacgaaaatattgtagataaactcaaaatcagagatatgagggtttgaatgcaattgttttttgtataagtatgaagttaatgctaattgagaagtagcagacatggtaagcagaacgtgtaaacctaggctgctttgcagagtaaagtgcagacctaaaaagcagctgcaaaagcagagcagtgtaaactgggc
gi|1 : AGTTTAC--ACGCTCTTCTTTT-GCA-G--CT-CT---------GC-ACCA-AA-ACG-G---CTGC-AAAAGCAGAGCGT--GTAAACTgggc
gi|4 : AGATTAC--ACGCTCTTCTTTT-G---G--C-ACT--CTGCACCAA-GC---AGCA---G---CTG--AAAAGCAGAGCGTGGGTAAAagggttatgcactgcagacctgcaagcagacgagttagaacttgctctgcaaagcaaacgtaactgaccaatcagcttcaattaaaaactataaatcaagatatggggtgaatgtaaggtgaaaaaaacacttaaaacaaagtaaaatggctgataaaaagaaaatataggaataaaaacttacttctgaacagcaaaataagctgatgttatttatttatgatgaaccacctttccagacctttggaacactttttaacctcctattcaaaaaagggctgcagtcaaaaatcccttaataatattgtagataaactcaaaatcagaggtatgaggggttgaaatgcaattgttttgtataagtataaaagttaatgctaattgagagagagcagacatggtaagcagaatgtgtaaaccccaggtctgctaaagtgcaggccagagtaaagtgcagacctaaaaagcagctgcaaaagcagagcgtgtaaattgggc
gi|8 : AGTTTAC--ATGCCCTTCTTTT-GCA-ACTCTGCT--TTA----AA-GC------A---G---CGGC-AAAAGCAGAGCTT--GTAACCTagggctatatgcactgcagagctgcaagcagaacgagttgaacttgctataattcagtcctgcaaagcagacggtacttttttaccattcagcttcaattaaaatataaatcaaacttatggggtgagtaggtgaaacaatacaactaaacgtcaattggctataaaaggagaatataggaataaaatcgaacttctgaacacaaaatagctgattttatttcttcatgtaaaccacctttccagcacctttgaaatactttttagctcttattaaaaagggtcgctagtcataaaattccttaatacgaaatagttgtagatacctcaaaatcagagatatgtaggtttgagatgcaattgttttttgggtataagtatgaagttaatggctattgagagtagcagacatggtagcgaagtgtaaacccaggctgattgcaagtaaagtgcagacctaacaagcactgcaaaacagagcgtgtaa
gi|5 : cAGTTTAC--ACGCTCTTCTTTT-GCA-G--CT-----TTG----CT-CC---AA-A---GTAGCTGC-AAAAGCAGAGCTT--GTaggagctatctaatgcagacttacaagcaaacgaaatagaacttatttcagtatgcaaagcagacgtaactgaccaatcagcttccagtaaaaatgataaatcaaattatggggtgaatgtaaagtggaaatactctaaaacgaagtaaaatggctggtaaaaagagaatatagaaataacaactgacttttgaacaccaaaataaactgaatttatttattcatgatgaaccacctttccagacatttgaagtactttttcagcctcctgtttaaaaaaggactgtagttaaaaagccctacgaaatattttagataatctcaaaatcagagatttgagggtttgaaatactttttttatatataagcataaaagttaatgctaattg
gi|7 : AGTTTAC--ACGTTCTTCTTTT-GCA-G--CT-----CTG----TT-CC---AA-AACAG---CTGC-AAATGCAGAGCGT--GTAAACaggggctatatatacactgcagacctgcgagcagcagaattagaatttgctctatttcaatctgcaaagcagacgtagctgaccaatcagcttcagttaaaaatgataaatcaaactaaggggtgtatacacactaacaacaaagtaaaagaaaactgacttctgaacagaaagaaaagattattgaattgtttcatgatgaacccccggatgaaccagacctttggaatcagtgctcagactcctattcaaaaaaggttacagacaaaaagtcctaagaaatattgtagataaactaaaagagagatatgaggaatgcagtggaaagttgtagaagtataaaagttaatgcttattaagagatagcagaaatagaaagcagaacgtgtaaacctgaatgaaggtctgctttgcaaataaaagtgcagacctaaagcagagcgtgtaaactg
gi|9 : AGTTTAC--ACGC-CTTCTTTT-GCACT--CTGCT--TT------T-AA---AGCA---G---CGGC--AAAGCAG-GCTT--GTAAaagggctgtgcactgcagacctgcaagcagacgaattagaacttggtctatttcagtctgcatagcagacgttactgaccaataagcttcaatgaaaagtgataaatcaagatatgagtggaagtaatggcgaatataacacactaaaaacaagtaaaatggtaggtaaagagaaataaaggaactaaacctgacttctgaacagcaagaataaataaattaattgtctcatgatgaaccagacgtttagaatacatgtacttcttcagtctcctattcaaaaaagatttgcaagcaaacagccctaagaaatagtgtagataaactgcaagaaatatattagggtctggaatgcaatggtaagttatatggaatcaagttgcttggggttgata
gi|7 : agGTTTAC--ACGCTCTGCATTT-GCA-G--CTGTT--TTG----GA-AC---AG-A---G---CTGC-AAAAGAAGAACGT--GTAAACTAAGG-G----C-TGT--GC--ACTGCAGACCTGCAA-GCAG-ACGAATTAGAACTTGGTCTATTTCAGT-CTGC-ATAGCAG-ACGTTAC----TGACCAATAAGCTTCAATGAAAAGTGATAAATCAAGA-TAT-G-AG---TGGA-AGT-AATGGCG-AATATAACAC-ACTAAAAAC-AAGTA-AAATGGTAGGTAAAGAGA-AATAAA-GGAA-CTAAACCTG-ACTTCTGAACAGCAAGAATAAA-TAAATTAATTGT-C-TCAT--GATGAA------------CCAG-ACGTTTAGAA-T-ACATGTACTTC-TTC-AGTCTCCTATTC--AA---AA--AAGATTTG-CAAGCA-AACA-GCCC-TAA----GAAATA-GTGTAGATAAA-CTGCAAG---AAATATA--TTAGGGTCTGGAATGC----AATGG-Tagagctatcttaatgcaaacgacgcaacgaatagactatttcagtctgcaaagcagacgtaactgaccaatcagcttccataaaaatagtaaatcaaattatggtggaattaatgtataagtggaaatacttcttaaaacgaagttaaaatggcggtaaaaagagaatatacgaaataacaacttacttttaaacaccaaaataactgaagttatattcatgatgaaccacctgtccaacatttgaaagtactttttcagcctccttttaaaataaggatgaggtaaaaagccctacgaatattttagataagtctcaaaatcagagattgaggtttgaaatactttttttatatataagccataaaagttaatgctaatt
gi|3 : TTTAC---CGCTCTGCTTTT-GCA-G--CTGCT--TTG----GT-GC---AG-A---G---CTGC-AAAAGAAGAGCGT--GTAAACTA-GG-G----T-ATT--GC--ACTGCAGAGCTGCAA-GCAG-ACGAGTTAGAACTTGCTT--ATTCAGT-CTGC-AAAGCAG-ACGT-AC----TGACCAATCAGCTTCAATT-AAAAT-ATAAATCAAAC-T-TGG-GG---TGAC-TGT-AAG-GTG-AA---AATAC-ACT-AAAACAAAGTC-AAATGGCTAGT-AAAGGAGAATATA-GGAA-TAAAAA-TGAACTTCTGAACACCAA-AAT-AGCTGATTTTATT-T-CTTCAT--GATAAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTTTTATTT--AA---AA--GGG--TCG-CAGTCATAAAA-TCCT-T-ACG--AAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTG-AATGC----AATTGTTTTTT---GTA-TA-AG--TATG-AAGTTAAT-GCTAATTGAGAAGTAGCAGACATGGTAAGCAGAACGTGTAA-A-CC---T--A--GG-CT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AG--C-TG-CAAAAGCAGAGCAGT--GTAAACTaagttatatggaatcaagttgcttggggttgata
gi|4 : aTTTACCCACGCTCTGCTTTT--CA-G--CTGCTGCTTG----GT-GC---AG-A---G----TGCCAAAAGAAGAGCGT--GTAATCTA-GG-G----C-TATATGC--ACTGCAGAGCTGCAA-GCAGAACGAGTT-GAACTTGCTATAATTCAGTCCTGC-AAAGCAG-ACGGTACTTTTTTACCATTCAGCTTCAATT-AAAAT-ATAAATCAAACTTATGG-GG---TGA---GT-AG--GTG-AAAC-AATACAACT--AAAC---GTC-AATTGGCTA-TAAAAGGAGAATATA-GGAA-TAAAATC-GAACTTCTGAACA-CAA-AAT-AGCTGATTTTATT-T-CTTCAT--G-TAAACCACCTT-T---CCAGCACCTTTGAAA-T-AC-------TT-TTT-AG-CTCTTATTA--AA---AA--GGG--TCGCTAGTCATAAAATTCCT-T-AATACGAAATAGTTGTAGAT-AC-CT-CAAAATCAGAGATA--TGTAGGTTTGAGATGC----AATTG-TTTTTTGGGTA-TA-AG--TATG-AAGTTAATGGCT-ATTGAGAG-TAGCAGACATGGT-AGC-GAA-GTGTAA-ACCC------A--GG-CT-GA----TTG-----CA-AGTAAAGTGCAGACCTAA-----CAAGC----A---C-TG-CAAAA-CAGAGC-GT--GTAAgggc
gi|9 : TTAC--AAGC-CTGCTTT--GCC-G--CTGCT--TTA----AAAGC---AG-A---G----TGC-AAAAGAAG-GCGT--GTAAACTA-GA-G----C-TAT---CTTAATGCAAA----CGACGCA--ACGAAT-AGA-------CTATTTCAGT-CTGC-AAAGCAG-ACGTAAC----TGACCAATCAGCTTCCA-TAAAAATAGTAAATCAAAT-TATGGTGGAATTAATGTAT-AA--GTG-GA---AATACTTCTTAAAACGAAGTTAAAATGGC-GGTAAAAAGAGAATATACGAAA-TAACAACTT-ACTTTTAAACACCAA-AATAA-CTGAAGTTATA-T---TCAT--GATGAACCACCTG-T---CCA--ACATTTGAAAGT-AC-------TT-TTTCAGCCTCCT-TTT--AAAATAA--GGA--T-G--AGGTA-AAAA-GCCC-T-A----CGAATA-TTTTAGATAAGTCT-CAAAATCAGAGAT---TGA-GGTTTGAAATAC------TT--TTTTT---ATATAT-AAGCCATAAAAGTTAAT-GCTAATT
gi|5 : agAC--AAGCTCTGCTTTT-GCA-G--CTACT--TTG----GA-GC---AA-A---G---CTGC-AAAAGAAGAGCGT--GTAAACTA-GG-GGCTATATAT--AC--ACTGCAGACCTGCGA-GCAG-CAGAATTAGAATTTGCTCTATTTCAAT-CTGC-AAAGCAG-ACGTAGC----TGACCAATCAGCTTCAGTTAAAAATGATAAATCAAAC-TAAGG-GG---TG---TAT---------------ACAC-ACTAACAACAA-------------AGTAAAAG-----------------AAAACTG-ACTTCTGAACAGAAA-GAAAAGATTATTGAATTGT-T-TCAT--GATGAACCCCCGGATGAACCAG-ACCTTTGGAA-TCAG-------TG-CTC-AGACTCCTATTCA-AA---AA--AGG--TTA-CAGACA-AAAA-GTCC-TAA----GAAATA-TTGTAGATAAA-CT-AAAAG--AGAGATA--TGAGG------AATGCAGTGGAAAG----TT---GTA-GA-AG--TATAAAAGTTAAT-GCTTATTAAGAGATAGCAGAAATAGAAAGCAGAACGTGTAA-ACCTGAATGAA--GGTCT-GCT---TTG-----CAAATAAAAGTGCAGACCT---------------------------AAAGCAGAGC-GT--GTAAACT
gi|6 : CT--TTG----A--GC---AG-A---G---CTGC-AAAA------------------------------TAT--GT--CTTGCAGACCTGCAA-GCAG-ACAAATTAGAACTTGCTCTATTTCAGT-CTGCCAAAGCAGGACGTAAC----TAACCAATCAGCTTTACTTAAAA-TGATAAATCAAAA-TATGG-GG---TGAT-------------------ACAC-ACTAAAAACAAAG-A-AAATGGC--------GG------TA-GGAACT--AAACT-AACTTCTGAACAACAA-AA-A--------TTGCT-T-CATGATGCGATGAA------------CCAA-ACCTTTGGAA-T-TC-------TTCTTT-AGGCTCCTATTC--AA---AA---------------TA-AAAA--------A----GG---A-TTAAAGGCAAA-----AAGACCAGAGATAAGTGAGGGTCTGAAATg
gi|10 : -A---G---CTGC-AAAAGCAGAGCGT--GTAAATTG-Gtaatggtacgttacatggaatttagttgcttaggattgatacagagatcatacaattgatttgtataagtataaaaggtaaggcaaaaatcatatggaagcagaacgtgtaaaccacaggtttgcttcgcagagtaaagagcagacctaaaaaactgtaaactgcatggactttgcatcttaaatcatgtattt
gi|10 : ctgacctttgaaacactttttaacctcctattcaaaaaagggctgcagtcaaaaatcccttagtaatattgtagataaactcaaaatcagagatatgaggggttgaaatgcaattgttttgtataagtataaaagttattgctaattgagagagcgcagacatggtaagcagaatgtgtaaaccccaggtctgctttgcagagtaaagtgcagacctaaaaagcG-ACCTTTGAAA-C-AC-------TT-TTT-AACCTCCTATTC--AA---AAAAGGG--CTG-CAGTCA-AAAA-TCCC-TTA----GTAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGGTTGAAATGC----AATTG-TTTT----GTA-TA-AG--TATAAAAGTTATT-GCTAATTGAGAGAGCGCAGACATGGTAAGCAGAATGTGTAA-ACCC---C--A--GGTCT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AG--C-TG-CAAAAGCAGAGC-GT--GTAAATT
gi|11 : ctGAGATA--TGAGGGTTTGAAATGC----AATTG-TTTTT---GTA-TA-AG--TATGAAAGTTAAT-GCTAATTGAGAGATAGCAGACATGGTAAGCAGAACGTGTAA-ACCC---T--A--GGCCT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----Agg
gi|16 : AAATGC----AATTGATTTGT---GTA-AT-----TATAAAAGTTAAT-GCTAAATAAAATATAGCAGACATGGAAAGCAGGACGTGTAA-ACC
gi|6 : ATAC----AATTG-ATTT----GTA-TA-AG--TATAAAAGGTAAG-GC------AAAAAT--CA--TATGG-AAGCAGAACGTGTAA-ACCA---C--A--GG-TTTGCT---TCG-----CAGAGTAAAGAGCAGACCTAA-----AAAACTGTAAA--C-TG-CAat
gi|12 : ctttgagcagagctgcaaaatatgtcttgcagacctgcaagcagacaaattagaacttgctctatttcagtctgccaaagcaggacgtaactaaccaatcagctttacttaaaatgataaatcaaaatatggggtgatacacactaaaaacaaagaaaatggcggtaggaactaaactaacttctgaacaacaaaaattgcttcatgatgcgatgaaccaaacctttggaattcttctttaggctcctattcaaaataaaaaaggattaaaggcaaaaagaccagagataagtgagggtctgaaattaatggtacgttacatggaatttagttgcttaggattgatacagagatcTAAT-GCTAATTGTGAGA-------------GAGCAGA-CGTGTAA-ACCC---C--A--GGTCT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAAGCTTTACAGC----AG--C-TG-CAGAAGTAGAtggactttgcatcttaaatcatgtattt
gi|13 : gaaCGTGG-AAGCAGA-CGTGTAATACCC---C--A--TG-CCAGTT---TTGT----CAGAGTAAAGTGCAGGCCTAA-----ACAGC----AG--C-CGCCAAAAAC--AGC-GT--GTAAACT
gi|14 : TGGTAAGCAGGACGTGTAA-ACCC---C--A--TG-CCAGTT---TTG-----CAGAGTAAAGTGCAGGCCTAA-----ACAGC----AG--C-CG-CAATAAC--ATC-GT--GTAAACTgggc
gi|7 : gAAGAAGAACGTGTAA-A--C---T--AAGGG-CT-G------TG-----C-------ACTGCAGACCT-G-----CAAGC----AG--gggct
gi|9 : gtttacacgctctgcatttgcagctgttttggaacagagctgcaa--A--GC-CT-GCT---TTG-----C---------CGCTG-CTTTA-----AAAGC----AG--AGTG-CAAAAGAAG-GC-GT--GTAAACTacgaattagaacttggtctatttcagtctgcatagcagacgttactgaccaataagcttcaatgaaaagtgataaatcaagatatgagtggaagtaatggcgaatataacacactaaaaacaagtaaaatggtaggtaaagagaaataaaggaactaaacctgacttctgaacagcaagaataaataaattaattgtctcatgatgaaccagacgtttagaatacatgtacttcttcagtctcctattcaaaaaagatttgcaagcaaacagccctaagaaatagtgtagataaactgcaagaaatatattagggtctggaatgcaatggtaagttatatggaatcaagttgcttggggttgata
gi|4 : agttacaTGCA---CCAA-----GCAGC----AG--C-TG--AAAAGCAGAGC-GTGGGTAAAagagctatcttaatgcaaacgacgcaacgaatagactatttcagtctgcaaagcagacgtaactgaccaatcagcttccataaaaatagtaaatcaaattatggtggaattaatgtataagtggaaatacttcttaaaacgaagttaaaatggcggtaaaaagagaatatacgaaataacaacttacttttaaacaccaaaataactgaagttatattcatgatgaaccacctgtccaacatttgaaagtactttttcagcctccttttaaaataaggatgaggtaaaaagccctacgaatattttagataagtctcaaaatcagagattgaggtttgaaatactttttttatatataagccataaaagttaatgctaatt
gi|3 : -----AAAGC----AG--C-TG-CAAAAGCAGAGC-G---GTAAAgagtgccaaaagaagagcgtgtaatctagggctatatgcactgcagagctgcaagcagaacgagttgaacttgctataattcagtcctgcaaagcagacggtacttttttaccattcagcttcaattaaaatataaatcaaacttatggggtgagtaggtgaaacaatacaactaaacgtcaattggctataaaaggagaatataggaataaaatcgaacttctgaacacaaaatagctgattttatttcttcatgtaaaccacctttccagcacctttgaaatactttttagctcttattaaaaagggtcgctagtcataaaattccttaatacgaaatagttgtagatacctcaaaatcagagatatgtaggtttgagatgcaattgttttttgggtataagtatgaagttaatggctattgagagtagcagacatggtagcgaagtgtaaacccaggctgattgcaagtaaagtgcagacctaacaagcactgcaaaacagagcgtgtaa
gi|1 : a-----AAAAC----GG--C-TG-CAAAAGCAGAGC-GT--GTAAACTggtgcagagctgcaaaagaagagcgtgtaaactagggtattgcactgcagagctgcaagcagacgagttagaacttgcttattcagtctgcaaagcagacgtactgaccaatcagcttcaattaaaatataaatcaaacttggggtgactgtaaggtgaaaatacactaaaacaaagtcaaatggctagtaaaggagaatataggaataaaaatgaacttctgaacaccaaaatagctgattttatttcttcatgataaaccacctttccagacctttgaaatactttttagccttttatttaaaagggtcgcagtcataaaatccttacgaaaatattgtagataaactcaaaatcagagatatgagggtttgaatgcaattgttttttgtataagtatgaagttaatgctaattgagaagtagcagacatggtaagcagaacgtgtaaacctaggctgctttgcagagtaaagtgcagacctaaaaagcagctgcaaaagcagagcagtgtaaactgggc
gi|8 : -----AAAGC----AG--C-GG-CAAAAGCAGAGC-TT--GTAACCTggtgcagagctgcaaaagaagagcgtgtaaactagggttatgcactgcagacctgcaagcagacgagttagaacttgctctgcaaagcaaacgtaactgaccaatcagcttcaattaaaaactataaatcaagatatggggtgaatgtaaggtgaaaaaaacacttaaaacaaagtaaaatggctgataaaaagaaaatataggaataaaaacttacttctgaacagcaaaataagctgatgttatttatttatgatgaaccacctttccagacctttggaacactttttaacctcctattcaaaaaagggctgcagtcaaaaatcccttaataatattgtagataaactcaaaatcagaggtatgaggggttgaaatgcaattgttttgtataagtataaaagttaatgctaattgagagagagcagacatggtaagcagaatgtgtaaaccccaggtctgctaaagtgcaggccagagtaaagtgcagacctaaaaagcagctgcaaaagcagagcgtgtaaattgggc
gi|8 : c-----AAAGC----AGAGT-TG-CAAAAGAAGGGC-AT--GTAAACTaaagcagagttgcaaaagaagggcatgtaaactaggagctatctaatgcagacttacaagcaaacgaaatagaacttatttcagtatgcaaagcagacgtaactgaccaatcagcttccagtaaaaatgataaatcaaattatggggtgaatgtaaagtggaaatactctaaaacgaagtaaaatggctggtaaaaagagaatatagaaataacaactgacttttgaacaccaaaataaactgaatttatttattcatgatgaaccacctttccagacatttgaagtactttttcagcctcctgtttaaaaaaggactgtagttaaaaagccctacgaaatattttagataatctcaaaatcagagatttgagggtttgaaatactttttttatatataagcataaaagttaatgctaattg
gi|5 : caggttacaagctctgcttttgccgctgcttt-----AAAGT----AG--C-TG-CAAAAGCAGAGC-TT--GTaggagctatctaatgcagacttacaagcaaacgaaatagaacttatttcagtatgcaaagcagacgtaactgaccaatcagcttccagtaaaaatgataaatcaaattatggggtgaatgtaaagtggaaatactctaaaacgaagtaaaatggctggtaaaaagagaatatagaaataacaactgacttttgaacaccaaaataaactgaatttatttattcatgatgaaccacctttccagacatttgaagtactttttcagcctcctgtttaaaaaaggactgtagttaaaaagccctacgaaatattttagataatctcaaaatcagagatttgagggtttgaaatactttttttatatataagcataaaagttaatgctaattg
gi|7 : -----AAAAC----AG--C-TG-CAAATGCAGAGC-GT--GTAAACggagcaaagctgcaaaagaagagcgtgtaaactaggggctatatatacactgcagacctgcgagcagcagaattagaatttgctctatttcaatctgcaaagcagacgtagctgaccaatcagcttcagttaaaaatgataaatcaaactaaggggtgtatacacactaacaacaaagtaaaagaaaactgacttctgaacagaaagaaaagattattgaattgtttcatgatgaacccccggatgaaccagacctttggaatcagtgctcagactcctattcaaaaaaggttacagacaaaaagtcctaagaaatattgtagataaactaaaagagagatatgaggaatgcagtggaaagttgtagaagtataaaagttaatgcttattaagagatagcagaaatagaaagcagaacgtgtaaacctgaatgaaggtctgctttgcaaataaaagtgcagacctaaagcagagcgtgtaaactg
gi|7 : ----AG--C-TG-CAAAAGAAGAAC-GT--GTAAACTggaacagagctgcaaaagaagaacgtgtaaactaagggctgtgcactgcagacctgcaagcagacgaattagaacttggtctatttcagtctgcatagcagacgttactgaccaataagcttcaatgaaaagtgataaatcaagatatgagtggaagtaatggcgaatataacacactaaaaacaagtaaaatggtaggtaaagagaaataaaggaactaaacctgacttctgaacagcaagaataaataaattaattgtctcatgatgaaccagacgtttagaatacatgtacttcttcagtctcctattcaaaaaagatttgcaagcaaacagccctaagaaatagtgtagataaactgcaagaaatatattagggtctggaatgcaatggtaagttatatggaatcaagttgcttggggttgata
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AAATATATATATATAATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|17 ): ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Alignments
lowQualScore : 1 1111111 1111111111 11 111 111111 1111111 11 2222222 11111 2 11111
lowQualScore : 66 66 55 2 4 5 0 4 4 66 4 5555555 66 4 55 4 4 4 4 2 9999 1 5 1 4 4 66 9999999999 888888 2 66 4 4 4 4 4 66 4 7 0 1 2 0 4 4 2 99 5 4 444 2 8 888 4 66 1 000000 4 4 4 3333333 4 8 55 4 55 666 44 0 8 4 4 5555555 4 4 4 55 0 88 88888 3 2 3 5 3 99999 1 7 666 22222 99999 0 8888 4 1 5
lowQualScore : .. .. .. . . . . . . .. . ....... .. . .. . . . . . .... . . . . . .. .......... ...... . .. . . . . . .. . . . . . . . . . .. . . ... . . ... . .. . ...... . . . ....... . . .. . .. ... .. . . . . ....... . . . .. . .. ..... . . . . . ..... . . ... ..... ..... . .... . . .
lowQualScore : 99 11 44 9 4 0 8 4 4 33 4 7777777 11 4 77 9 4 4 4 2 4444 9 7 0 4 4 11 8888888888 222222 7 11 4 4 4 4 4 11 4 4 1 8 7 1 4 4 0 33 3 4 999 6 9 777 4 11 1 222222 0 0 0 0000000 0 0 00 0 55 000 77 8 0 9 0 0000000 0 0 0 00 4 22 00000 6 6 3 5 3 11111 8 3 444 77777 11111 6 5555 0 9 0
consensus : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGN-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-CTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGCTCTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGAATG--TAA--GTG-AA---AACAC--AC-T-AA-AA-CGAA--G-TAAAATGGCTGGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACANCAA-AATAAGCTGATTTTATT-T-C-T-CAT--GATGAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTCCTATTC--AAA-A--GGG--TCGC-AGTCA-AAAATCCC-T----A--GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATAAAAGTTAAT-GCTAATTGAGAGATAGCAGACATGGTAAGCAGAACGTGTAA-ACCC-----CAGGTCT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACT
Reference ( family-5174 ) : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGN-GCAGAGCTGC-AAAAGCAGAGCGTGTAAACTA-GG-G-CTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAATTAGAACTTGCTCTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAANT-ATGG-GG--TGANTG--TAA--GTG-AA---AACAC--AC-T-AA-AA-CGAA--G-TAAAATGGCTGGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACANCAA-AATAAGCTGANTTTATT-T-C-T-CAT--GATGAACCACCTT-T---CCAG-ACCTTTGGAA-T-AC-------TT-TTT-AGCCTCCTATTC--AAA-A--GGG--TTGC-AGTCA-AAAANCCC-T----A--GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATAAAAGTTAAT-GCTAATTGAGAGATAGCAGACATGGTAAGCAGAACGTGTAA-ACCC-----CAGG-CT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACT
gi|1 : AGTTTAC--ACGCTCTGCTTTTGCAGCCGTT--TTGGT-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-TTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGC----------TC-TG-CAAAGCA-AACGTAACTG----ACCAATCAGCTTCAATTAAAAACTATAAATCAAGAT-ATGG-GG--TGAATG--TAAG-GTGAAA---AAAAC--ACTT-AA-AA-CAAA--G-TAAAATGGCTGATAAAAAGAAAATATA-GGAA-TAAAAACTT-ACTTCTGAACAGCAA-AATAAGCTGATGTTATT-TAT-T-TAT--GATGAACCACCTT-T---CCAG-ACCTTTGGAA-C-AC-------TT-TTT-AACCTCCTATTCAAAAA-A--GGG--CTGC-AGTCA-AAAATCCCTT----A--ATAATA-TTGTAGATAAA-CT-CAAAATCAGAGGTA--TGAGGGGTTGAAATGCAATTG--TTT-T---GTATAAG-TATAAAAGTTAAT-GCTAATTGAGAGAGAGCAGACATGGTAAGCAGAATGTGTAA-ACCC-----CAGGTCT-GCTAAAGTGCAGGCCAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAATT
gi|10 : G-ACCTTTGAAA-C-AC-------TT-TTT-AACCTCCTATTC--AAA-AAAGGG--CTGC-AGTCA-AAAATCCC-TT---A--GTAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGGTTGAAATGCAATTG-TTTT-----GTATAAG-TATAAAAGTTATT-GCTAATTGAGAGAGCGCAGACATGGTAAGCAGAATGTGTAA-ACCC-----CAGGTCT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAATTgggc
gi|11 : ctGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATGAAAGTTAAT-GCTAATTGAGAGATAGCAGACATGGTAAGCAGAACGTGTAA-ACCC-----TAGGCCT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----Agg
gi|12 : TAAT-GCTAATTGTGAGAGAGCAGAC--------------GTGTAA-ACCC-----CAGGTCT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAAGCTTTACAGC----AGCTG-CAGAAGTAGA
gi|13 : gaaCGTGG-AAGCAGA-CGTGTAATACCC-----CATG-CCAGTT---TTGT----CAGAGTAAAGTGCAGGCCTAA-----ACAGC----AGCCGCCAAAAAC--AGC-GTGTAAACT
gi|14 : TGGTAAGCAGGACGTGTAA-ACCC-----CATG-CCAGTT---TTG-----CAGAGTAAAGTGCAGGCCTAA-----ACAGC----AGCCG-CAATAAC--ATC-GTGTAAACTgggc
gi|16 : gAAATGCAATTG-ATTT-----GTGTAAT-TATAAAAGTTAAT-GCTAAATAAAATATAGCAGACATGGAAAGCAGGACGTGTAA-ACCgggct
gi|2 : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGT-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-TTA-T--G----C--ACTGCAGAGCTGCAAGCAGA-CGAGTTAGAACTTGCTCTAATTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGACTG--TAA--GTG-AA---AATAC--AC-T-AA-AAACAAA--G-TCAAATGACTAGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACACCAA-AATAAGCTGATTTTATT-T-C-T-CAT--GATAAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTTTTATTT--AAA-A--GGG--TCGT-AGTCA-AAAATCCC-T----A--GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCGATTG-TTTT-T---GTAATAG-TATGAAAGTTAAT-GCTAATTGAGAGATAGCAAACATGGTAAGCAGAACGTGTAA-ACCC-----TAGG-CT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACTat
gi|3 : TTTAC---CGCTCTGCTTTTGCAGCTGCT--TTGGT-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G--TATT--G----C--ACTGCAGAGCTGCAAGCAGA-CGAGTTAGAACTTGCT-TA-TTCAGTC-TG-CAAAGCA-GACGT-ACTG----ACCAATCAGCTTCAATT-AAAAT-ATAAATCAAACT--TGG-GG--TGACTG--TAAG-GTG-AA---AATAC--AC-T-AA-AA-CAAA--G-TCAAATGGCTAGT-AAAGGAGAATATA-GGAA-TAAAAA-TGAACTTCTGAACACCAA-AAT-AGCTGATTTTATT-T-CTT-CAT--GATAAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTTTTATTT--AAA-A--GGG--TCGC-AGTCATAAAATCCT-T----ACGAAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTG-AATGCAATTGTTTTT-T---GTATAAG-TAT-GAAGTTAAT-GCTAATTGAGAAGTAGCAGACATGGTAAGCAGAACGTGTAA-A-CC-----TAGG-CT-GCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGCAGTGTAAACT
gi|4 : aTTTACCCACGCTCTGCTTTT-CAGCTGCTGCTTGGT-GCAGAG-TGCCAAAAGAAGAGCGTGTAATCTA-GG-G-CTA-TATG----C--ACTGCAGAGCTGCAAGCAGAACGAGTT-GAACTTGCTATAATTCAGTCCTG-CAAAGCA-GACGGTACTTTTTTACCATTCAGCTTCAATTAAAA-T-ATAAATCAAACTTATGG-GG--TGA--G--TAG--GTG-AA---A---C--AA-T-AC-AA-CTAAACG-TCAATTGGCTA-TAAAAGGAGAATATA-GGAA-TAAAATC-GAACTTCTGAACA-CAA-AATA-GCTGATTTTATT-T-C-TTCAT--G-TAAACCACCTT-T---CCAGCACCTTTGAAA-T-AC-------TT-TTT-AGC-TCTTATTA--AAA-A--GGG--TCGCTAGTCATAAAATTCC-TTAATAC-GAAATAGTTGTAGATAC--CT-CAAAATCAGAGATA--TGTAGGTTTGAGATGCAATTG-TTTT-TTGGGTATAAG-TAT-GAAGTTAATGGCT-ATTGAGAG-TAGCAGACATGGT-AGC-GAA-GTGTAA-A-CC-----CAGG-CT-GA----TTG-----CA-AGTAAAGTGCAGACCTAA-----CAAGC----A-CTG-CAAAA-CAGAGC-GTGTAAgggc
gi|5 : AC--AAGCTCTGCTTTTGCAGCTACT--TTGGA-GCAAAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-GGCTA-T--ATATAC--ACTGCAGACCTGCGAGCAGC-AGAATTAGAATTTGCTCTATTTCAATC-TG-CAAAGCA-GACGTAGCTG----ACCAATCAGCTTCAGTTAAAAATGATAAATCAAACT-AAGG-GG--TG--TA--T--------------ACAC--AC-T-AACAA-CAAA--G-TAAA---------------AGAA--------------AACTG-ACTTCTGAACAGAAA-GAAAAGATTATTGAATTGT-T-T-CAT--GATGAACCCCCGGATGAACCAG-ACCTTTGGAA-TCAG-------TG-CTC-AGACTCCTATTCA-AAA-A--AGG--TTAC-AGACA-AAAAGTCC-TA---A--GAAATA-TTGTAGATAAA-CT-AAAAG--AGAGATA--TGAGG------AATGCAGTGGAAAGT-T---GTAGAAG-TATAAAAGTTAAT-GCTTATTAAGAGATAGCAGAAATAGAAAGCAGAACGTGTAA-ACCTGAATGAAGGTCT-GCT---TTG-----CAAATAAAAGTGCAGACCT------------------------AAAGCAGAGC-GTGTAAACT
gi|6 : CT--TTG-A-GCAGAGCTGC-AAAA------------------------TA-T--G----T--CTTGCAGACCTGCAAGCAGA-CAAATTAGAACTTGCTCTATTTCAGTC-TGCCAAAGCAGGACGTAACTA----ACCAATCAGCTTTACTT-AAAATGATAAATCAAAAT-ATGG-GG--TGAT-------------------ACAC--AC-TAAA-AA-CAAA--G--AAAATGGC-GG-------------TA-GGAACT--AAACT-AACTTCTGAACAACAA-AA-A--------TTGCT-T-CAT-GATGCGATGAA------------CCAA-ACCTTTGGAA-T-TC-------TTCTTT-AGGCTCCTATTC--AAA-A---------------TA-AAAA----------A--GG---A-TTAAAGGCAAA-----AAGACCAGAGATAAGTGAGGGTCTGAAATg
gi|6 : ATACAATTG-ATTT-----GTATAAG-TATAAAAGGTAAG-GC------AAAAAT--C--ATATGG-AAGCAGAACGTGTAA-ACCA-----CAGGTTT-GCT---TCG-----CAGAGTAAAGAGCAGACCTAA-----AAAACTGTAAACTG-CAtaatggtacgttacatggaatttagttgcttaggattgatacagagatcatacaattgatttgtataagtataaaaggtaaggcaaaaatcatatggaagcagaacgtgtaaaccacaggtttgcttcgcagagtaaagagcagacctaaaaaactgtaaactgcatggactttgcatcttaaatcatgtattt
gi|7 : ctttgagcagagctgcaaaatatgtcttgcagacctgcaagcagacaaattagaacttgctctatttcagtctgccaaagcaggacgtaactaaccaatcagctttacttaaaatgataaatcaaaatatggggtgatacacactaaaaacaaagaaaatggcggtaggaactaaactaacttctgaacaacaaaaattgcttcatgatgcgatgaaccaaacctttggaattcttctttaggctcctattcaaaataaaaaaggattaaaggcaaaaagaccagagataagtgagggtctgaaattaatggtacgttacatggaatttagttgcttaggattgatacagagatcGTTTAC--ACGCTCTGCATTTGCAGCTGTT--TTGGA-ACAGAGCTGC-AAAAGAAGAACGTGTAAACTAAGG-G-CTG-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAATTAGAACTTGGTCTATTTCAGTC-TG-CATAGCA-GACGTTACTG----ACCAATAAGCTTCAATGAAAAGTGATAAATCAAGAT-AT-G-AG--TGGAAG--TAATGGCG-AATATAACAC--AC-T-AA-AA-ACAA--G-TAAAATGGTAGGTAAAGAGA-AATAAA-GGAA-CTAAACCTG-ACTTCTGAACAGCAAGAATAAA-TAAATTAATTGT-C-T-CAT--GATGAA------------CCAG-ACGTTTAGAA-T-ACATGTACTTC-TTC-AGTCTCCTATTC--AAA-A--AAGATTTGC-AAGCA-AACAGCCC-TA---A--GAAATA-GTGTAGATAAA-CTGCAAG---AAATATA--TTAGGGTCTGGAATGCAATGG-Ttggactttgcatcttaaatcatgtattt
gi|8 : CAGGTTAC--AAGCTCTGCTTTTGCCGCTGCT--TTAAA-GCAGAGTTGC-AAAAGAAGGGCATGTAAACTA-GGAG-CTA-T--C----T--AATGCAGACTTACAAGCAAA-CGAAATAGAACTT-----ATTTCAGTA-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCCAGTAAAAATGATAAATCAAATT-ATGG-GG--TGAATG--TAAA-GTG-GA---AATAC--TC-T-AA-AA-CGAA--G-TAAAATGGCTGGTAAAAAGAGAATATA-GAAA-TAACAACTG-ACTTTTGAACACCAA-AATAAACTGAATTTATT-TAT-T-CAT--GATGAACCACCTT-T---CCAG-ACATTTGAAG-T-AC-------TT-TTTCAGCCTCCTGTTTAAAAA-A--GGA--CTGT-AGTTA-AAAAGCCC-T----AC-GAAATA-TTTTAGATAAT-CT-CAAAATCAGAGATT--TGAGGGTTTGAAATAC--TTT-TTTTAT---ATATAAG-CATAAAAGTTAAT-GCTAATTGaagttatatggaatcaagttgcttggggttgata
gi|9 : TTAC--AAGC-CTGCTTT-GCCGCTGCT--TTAAAAGCAGAG-TGC-AAAAGAAG-GCGTGTAAACTA-GA-G-CTA-T-------CTTAATGCAAAC--G-ACGCA-A-CGAAT-AGA-------CTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCCA-TAAAAATAGTAAATCAAATT-ATGGTGGAATTAATGTATAA--GTG-GA---AATACTTCT-T-AA-AA-CGAA--GTTAAAATGGC-GGTAAAAAGAGAATATACGAAA-TAACAACTT-ACTTTTAAACACCAA-AATAA-CTGAAGTTATA-T---T-CAT--GATGAACCACCTG-T---CCA--ACATTTGAAAGT-AC-------TT-TTTCAGCCTCCTTTTA--AAATA--AGG--ATG--AGGTA-AAAAGCCC-T----A--CGAATA-TTTTAGATAAGTCT-CAAAATCAGAGAT---TGA-GGTTTGAAATAC--TTT-TTTTAT---ATATAAGCCATAAAAGTTAAT-GCTAATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATATATATATATAATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|17 ): ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Alignments
lowQualScore : 1111111 11 11 111 111111 1111111 11 2222222 11 11111 11111
lowQualScore : 66 66 55 2 4 0 4 4 66 4 5555555 66 4 55 4 4 4 4 2 9999 1 5 1 4 4 66 22 777 99 888888 2 66 4 4 4 4 4 66 4 7 0 1 2 0 4 4 2 99 5 4 444 2 8 888 4 66 1 000000 4 4 4 3333333 4 8 55 55 55 8888 44 0 8 5 4 5555555 4 4 4 55 00 77777 3 2 3 3 555 7777 2 44 4 2 3 1 88888 7 555 11111 88888 7777 2 3 0 4
lowQualScore : .. .. .. . . . . . .. . ....... .. . .. . . . . . .... . . . . . .. .. ... .. ...... . .. . . . . . .. . . . . . . . . . .. . . ... . . ... . .. . ...... . . . ....... . . .. .. .. .... .. . . . . ....... . . . .. .. ..... . . . . ... .... . .. . . . . ..... . ... ..... ..... .... . . . .
lowQualScore : 99 11 44 9 4 8 4 4 33 4 7777777 11 4 77 9 4 4 4 2 4444 9 7 9 4 4 11 88 222 44 222222 7 11 4 4 4 4 4 11 4 4 1 8 7 1 4 4 0 33 3 4 999 3 9 777 4 11 1 222222 0 0 0 0000000 0 0 00 55 55 9999 77 8 0 5 0 0000000 0 0 0 00 77 00000 3 9 1 1 444 1111 1 22 4 1 1 5 33333 0 888 77777 33333 7777 8 6 8 4
consensus : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGN-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-CTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGCTCTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGAATG--TAA--GTG-AA---AACAC--AC-T-AA-AA-CGAA--G-TAAAATGGCTGGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACANCAA-AATAAGCTGATTTTATT-T-C-T-CAT--GATGAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTCCTATTC--AA--AA--GGG--TCGC-AGTCA-AAAATCCC-T----A--GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATAAAAGTTAA-T-GCT---AATTG----AGAGATAGCAGACA--TGGTAAGCAGAACGTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACT
Reference ( family-5174 ) : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGN-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-CTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGCTCTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGAATG--TAA--GTG-AA---AACAC--AC-T-AA-AA-CGAA--G-TAAAATGGCTGGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACANCAA-AATAAGCTGATTTTATT-T-C-T-CAT--GATGAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTCCTATTC--AA--AA--GGG--TCGC-AGTCA-AAAATCCC-T----A--GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATAAAAGTTAA-T-GCT---AATTG----AGAGATAGCAGACA--TGGTAAGCAGAACGTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACT
gi|1 : AGTTTAC--ACGCTCTGCTTTTGCAGCCGTT--TTGGT-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-TTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGC----------TC-TG-CAAAGCA-AACGTAACTG----ACCAATCAGCTTCAATTAAAAACTATAAATCAAGAT-ATGG-GG--TGAATG--TAAG-GTGAAA---AAAAC--ACTT-AA-AA-CAAA--G-TAAAATGGCTGATAAAAAGAAAATATA-GGAA-TAAAAACTT-ACTTCTGAACAGCAA-AATAAGCTGATGTTATT-TAT-T-TAT--GATGAACCACCTT-T---CCAG-ACCTTTGGAA-C-AC-------TT-TTT-AACCTCCTATTCAAAA--AA--GGG--CTGC-AGTCA-AAAATCCCTT----A--ATAATA-TTGTAGATAAA-CT-CAAAATCAGAGGTA--TGAGGGGTTGAAATGCAATTG--TTT-T---GTATAAG-TATAAAAGTTAA-T-GCT---AATTG----AGAGAGAGCAGACA--TGGTAAGCAGAATGTGTAA-ACCC-----CAGGTCTGCTAAAGTGCAGGCCAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAATT
gi|10 : G-ACCTTTGAAA-C-AC-------TT-TTT-AACCTCCTATTC--AA--AAAAGGG--CTGC-AGTCA-AAAATCCC-TT---A--GTAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGGTTGAAATGCAATTG-TTTT-----GTATAAG-TATAAAAGTTAT-T-GCT---AATTG----AGAGAGCGCAGACA--TGGTAAGCAGAATGTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAATTgggc
gi|11 : ctGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATGAAAGTTAA-T-GCT---AATTG----AGAGATAGCAGACA--TGGTAAGCAGAACGTGTAA-ACCC-----TAGGCCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----Agg
gi|12 : TAA-T-GCT---AATTG----TGAGAGAGCAGAC----------------GTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAAGCTTTACAGC----AGCTG-CAGAAGTAGA
gi|13 : gaaCG--TGG-AAGCAGA-CGTGTAATACCC-----CATGCCAGTT---TTGT----CAGAGTAAAGTGCAGGCCTAA-----ACAGC----AGCCGCCAAAAAC--AGC-GTGTAAACT
gi|14 : --TGGTAAGCAGGACGTGTAA-ACCC-----CATGCCAGTT---TTG-----CAGAGTAAAGTGCAGGCCTAA-----ACAGC----AGCCG-CAATAAC--ATC-GTGTAAACTgggc
gi|16 : gAAATGCAATTG-ATTT-----GTGTAAT-TATAAAAGTTAA-T-GCT---AAATA----AAATATAGCAGACA--TGGAAAGCAGGACGTGTAA-ACCgggct
gi|2 : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGT-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-TTA-T--G----C--ACTGCAGAGCTGCAAGCAGA-CGAGTTAGAACTTGCTCTAATTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGACTG--TAA--GTG-AA---AATAC--AC-T-AA-AAACAAA--G-TCAAATGACTAGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACACCAA-AATAAGCTGATTTTATT-T-C-T-CAT--GATAAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTTTTATTT--AA--AA--GGG--TCGT-AGTCA-AAAATCCC-T----A--GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCGATTG-TTTT-T---GTAATAG-TATGAAAGTTAA-T-GCT---AATTG----AGAGATAGCAAACA--TGGTAAGCAGAACGTGTAA-ACCC-----TAGG-CTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACTat
gi|3 : TTTAC---CGCTCTGCTTTTGCAGCTGCT--TTGGT-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G--TATT--G----C--ACTGCAGAGCTGCAAGCAGA-CGAGTTAGAACTTGCT-TA-TTCAGTC-TG-CAAAGCA-GACGT-ACTG----ACCAATCAGCTTCAATT-AAAAT-ATAAATCAAACT--TGG-GG--TGACTG--TAAG-GTG-AA---AATAC--AC-T-AA-AA-CAAA--G-TCAAATGGCTAGT-AAAGGAGAATATA-GGAA-TAAAAA-TGAACTTCTGAACACCAA-AAT-AGCTGATTTTATT-T-CTT-CAT--GATAAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTTTTATTT--AA--AA--GGG--TCGC-AGTCATAAAATCCT-T----ACGAAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTG-AATGCAATTGTTTTT-T---GTATAAG-TAT-GAAGTTAA-T-GCT---AATTG----AGAAGTAGCAGACA--TGGTAAGCAGAACGTGTAA-A-CC-----TAGG-CTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGCAGTGTAAACT
gi|4 : aTTTACCCACGCTCTGCTTTT-CAGCTGCTGCTTGGT-GCAGAG-TGCCAAAAGAAGAGCGTGTAATCTA-GG-G-CTA-TATG----C--ACTGCAGAGCTGCAAGCAGAACGAGTT-GAACTTGCTATAATTCAGTCCTG-CAAAGCA-GACGGTACTTTTTTACCATTCAGCTTCAATTAAAA-T-ATAAATCAAACTTATGG-GG--TGA--G--TAG--GTG-AA---A---C--AA-T-AC-AA-CTAAACG-TCAATTGGCTA-TAAAAGGAGAATATA-GGAA-TAAAATC-GAACTTCTGAACA-CAA-AATA-GCTGATTTTATT-T-C-TTCAT--G-TAAACCACCTT-T---CCAGCACCTTTGAAA-T-AC-------TT-TTT-AGC-TCTTATTA--AA--AA--GGG--TCGCTAGTCATAAAATTCC-TTAATAC-GAAATAGTTGTAGATAC--CT-CAAAATCAGAGATA--TGTAGGTTTGAGATGCAATTG-TTTT-TTGGGTATAAG-TAT-GAAGTTAA-TGGCT----ATTG----AGAG-TAGCAGACA--TGGT-AGC-GAA-GTGTAA-A-CC-----CAGG-CTGA----TTG-----CA-AGTAAAGTGCAGACCTAA-----CAAGC----A-CTG-CAAAA-CAGAGC-GTGTAAgggc
gi|5 : AC--AAGCTCTGCTTTTGCAGCTACT--TTGGA-GCAAAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-GGCTA-T--ATATAC--ACTGCAGACCTGCGAGCAGC-AGAATTAGAATTTGCTCTATTTCAATC-TG-CAAAGCA-GACGTAGCTG----ACCAATCAGCTTCAGTTAAAAATGATAAATCAAACT-AAGG-GG--TGTAT------------------ACAC--AC-T-AACAA-CAAA--G-TAAA---------------AGAA--------------AACTG-ACTTCTGAACAGAAA-GAAAAGATTATTGAATTGT-T-T-CAT--GATGAACCCCCGGATGAACCAG-ACCTTTGGAA-TCAG-------TG-CTC-AGACTCCTATTCA-AA--AA--AGG--TTAC-AGACA-AAAAGTCC-TA---A--GAAATA-TTGTAGATAAA-CT-AAAAG--AGAGATA--TGAGG------AATGCAGTGGAAAGT-T---GTAGAAG-TATAAAAGTTAA-T-GCT---TATTA----AGAGATAGCAGAAA--TAGAAAGCAGAACGTGTAA-ACCTGAATGAAGGTCTGCT---TTG-----CAAATAAAAGTGCAGACCT------------------------AAAGCAGAGC-GTGTAAACT
gi|6 : CT--TTG-A-GCAGAGCTGC-AAAA------------------------TA-T--G----T--CTTGCAGACCTGCAAGCAGA-CAAATTAGAACTTGCTCTATTTCAGTC-TGCCAAAGCAGGACGTAACTA----ACCAATCAGCTTTACTT-AAAATGATAAATCAAAAT-ATGG-GG--TG-AT------------------ACAC--AC-TAAA-AA-CAAA--G--AAAATGGC-GG-------------TA-GGAACT--AAACT-AACTTCTGAACAACAA-AA-A--------TTGCT-T-CAT-GATGCGATGAA------------CCAA-ACCTTTGGAA-T-TC-------TTCTTT-AGGCTCCTATTC--AA--AA---------------TA-AAAA----------A--GG---A-TTAAAGGCAAA-----AAGACCAGAGATAAGTGAGGGTCTGAAAT-TAATGG---TA-C---GT-TA---CATGGAATTTAGTT-GCTTAGGATTGATACAGAGAT--CATACAATTGATTTGTATAA-GTATAA-A---------AGGT-----------------------AAG-GC------AA-----AAATC----A--TA-TGGAAGCAGAAC-GTGTAAACg
gi|6 : ATACAATTG-ATTT-----GTATAAG-TATAAAAGGTAA-G-GC-------------AAAAAT--C--ATA--TGG-AAGCAGAACGTGTAA-ACCA-----CAGGTTTGCT---TCG-----CAGAGTAAAGAGCAGACCTAA-----AAAACTGTAAACTG-CAcacaggtttgcttcgcagagtaaagagcagacctaaaaaactgtaaactgcatggactttgcatcttaaatcatgtattt
gi|7 : ctttgagcagagctgcaaaatatgtcttgcagacctgcaagcagacaaattagaacttgctctatttcagtctgccaaagcaggacgtaactaaccaatcagctttacttaaaatgataaatcaaaatatggggtgatacacactaaaaacaaagaaaatggcggtaggaactaaactaacttctgaacaacaaaaattgcttcatgatgcgatgaaccaaacctttggaattcttctttaggctcctattcaaaataaaaaaggattaaaggcaaaaagaccagagataagtgagggtctgaaattaatggtacgttacatggaatttagttgcttaggattgatacagagatcGTTTAC--ACGCTCTGCATTTGCAGCTGTT--TTGGA-ACAGAGCTGC-AAAAGAAGAACGTGTAAACTAAGG-G-CTG-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAATTAGAACTTGGTCTATTTCAGTC-TG-CATAGCA-GACGTTACTG----ACCAATAAGCTTCAATGAAAAGTGATAAATCAAGAT-AT-G-AG--TGGAAG--TAATGGCG-AATATAACAC--AC-T-AA-AA-ACAA--G-TAAAATGGTAGGTAAAGAGA-AATAAA-GGAA-CTAAACCTG-ACTTCTGAACAGCAAGAATAAA-TAAATTAATTGT-C-T-CAT--GATGAA------------CCAG-ACGTTTAGAA-T-ACATGTACTTC-TTC-AGTCTCCTATTC--AA--AA--AAGATTTGC-AAGCA-AACAGCCC-TA---A--GAAATA-GTGTAGATAAA-CTGCAAG---AAATATA--TTAGGGTCTGGAATGCAATGG-Ttggactttgcatcttaaatcatgtattt
gi|8 : CAGGTTAC--AAGCTCTGCTTTTGCCGCTGCT--TTAAA-GCAGAGTTGC-AAAAGAAGGGCATGTAAACTA-GGAG-CTA-T--C----T--AATGCAGACTTACAAGCAAA-CGAAATAGAACTT-----ATTTCAGTA-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCCAGTAAAAATGATAAATCAAATT-ATGG-GG--TGAATG--TAAA-GTG-GA---AATAC--TC-T-AA-AA-CGAA--G-TAAAATGGCTGGTAAAAAGAGAATATA-GAAA-TAACAACTG-ACTTTTGAACACCAA-AATAAACTGAATTTATT-TAT-T-CAT--GATGAACCACCTT-T---CCAG-ACATTTGAAG-T-AC-------TT-TTTCAGCCTCCTGTTTAAAA--AA--GGA--CTGT-AGTTA-AAAAGCCC-T----AC-GAAATA-TTTTAGATAAT-CT-CAAAATCAGAGATT--TGAGGGTTTGAAATAC--TTT-TTTTAT---ATATAAG-CATAAAAGTTAA-T-GCT---AATTG----aagttatatggaatcaagttgcttggggttgata
gi|9 : TTAC--AAGC-CTGCTTT-GCCGCTGCT--TTAAAAGCAGAG-TGC-AAAAGAAG-GCGTGTAAACTA-GA-G-CTA-T-------CTTAATGCAAAC--G-ACGCA-A-CGAAT-AGA-------CTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCCA-TAAAAATAGTAAATCAAATT-ATGGTGGAATTAATGTATAA--GTG-GA---AATACTTCT-T-AA-AA-CGAA--GTTAAAATGGC-GGTAAAAAGAGAATATACGAAA-TAACAACTT-ACTTTTAAACACCAA-AATAA-CTGAAGTTATA-T---T-CAT--GATGAACCACCTG-T---CCA--ACATTTGAAAGT-AC-------TT-TTTCAGCCTCCTTTTA--AAATAA--GGA--T-G--AGGTA-AAAAGCCC-T----A--CGAATA-TTTTAGATAAGTCT-CAAAATCAGAGAT---TGA-GGTTTGAAATAC--TTT-TTTTAT---ATATAAGCCATAAAAGTTAA-T-GCT---AATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATATATATATATAATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|17 ): ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Alignments
lowQualScore : 1111111 11 11 111 111111 1111111 11 2222222 11 11111 11111
lowQualScore : 66 66 55 2 4 0 4 4 66 4 5555555 66 4 55 4 4 4 4 2 9999 1 5 1 4 4 66 22 777 99 888888 2 66 4 4 4 4 4 66 4 7 0 1 2 0 4 4 2 99 5 4 444 2 8 888 4 66 1 000000 4 4 4 3333333 4 8 55 55 55 8888 44 0 8 5 4 5555555 4 4 4 55 00 77777 3 2 3 3 555 7777 2 44 4 2 3 1 88888 7 555 11111 88888 7777 2 3 0 4
lowQualScore : .. .. .. . . . . . .. . ....... .. . .. . . . . . .... . . . . . .. .. ... .. ...... . .. . . . . . .. . . . . . . . . . .. . . ... . . ... . .. . ...... . . . ....... . . .. .. .. .... .. . . . . ....... . . . .. .. ..... . . . . ... .... . .. . . . . ..... . ... ..... ..... .... . . . .
lowQualScore : 99 11 44 9 4 8 4 4 33 4 7777777 11 4 77 9 4 4 4 2 4444 9 7 9 4 4 11 88 222 44 222222 7 11 4 4 4 4 4 11 4 4 1 8 7 1 4 4 0 33 3 4 999 3 9 777 4 11 1 222222 0 0 0 0000000 0 0 00 55 55 9999 77 8 0 5 0 0000000 0 0 0 00 77 00000 3 9 1 1 444 1111 1 22 4 1 1 5 33333 0 888 77777 33333 7777 8 6 8 4
consensus : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGN-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-CTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGCTCTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGAATG--TAA--GTG-AA---AACAC--AC-T-AA-AA-CGAA--G-TAAAATGGCTGGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACANCAA-AATAAGCTGATTTTATT-T-C-T-CAT--GATGAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTCCTATTC--AA--AA--GGG--TCGC-AGTCA-AAAATCCC-T----A--GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATAAAAGTTAA-T-GCT---AATTG----AGAGATAGCAGACA--TGGTAAGCAGAACGTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACT
Reference ( family-5174 ) : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGN-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-CTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGCTCTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGAATG--TAA--GTG-AA---AACAC--AC-T-AA-AA-CGAA--G-TAAAATGGCTGGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACANCAA-AATAAGCTGATTTTATT-T-C-T-CAT--GATGAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTCCTATTC--AA--AA--GGG--TCGC-AGTCA-AAAATCCC-T----A--GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATAAAAGTTAA-T-GCT---AATTG----AGAGATAGCAGACA--TGGTAAGCAGAACGTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACT
gi|1 : AGTTTAC--ACGCTCTGCTTTTGCAGCCGTT--TTGGT-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-TTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGC----------TC-TG-CAAAGCA-AACGTAACTG----ACCAATCAGCTTCAATTAAAAACTATAAATCAAGAT-ATGG-GG--TGAATG--TAAG-GTGAAA---AAAAC--ACTT-AA-AA-CAAA--G-TAAAATGGCTGATAAAAAGAAAATATA-GGAA-TAAAAACTT-ACTTCTGAACAGCAA-AATAAGCTGATGTTATT-TAT-T-TAT--GATGAACCACCTT-T---CCAG-ACCTTTGGAA-C-AC-------TT-TTT-AACCTCCTATTCAAAA--AA--GGG--CTGC-AGTCA-AAAATCCCTT----A--ATAATA-TTGTAGATAAA-CT-CAAAATCAGAGGTA--TGAGGGGTTGAAATGCAATTG--TTT-T---GTATAAG-TATAAAAGTTAA-T-GCT---AATTG----AGAGAGAGCAGACA--TGGTAAGCAGAATGTGTAA-ACCC-----CAGGTCTGCTAAAGTGCAGGCCAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAATT
gi|10 : G-ACCTTTGAAA-C-AC-------TT-TTT-AACCTCCTATTC--AA--AAAAGGG--CTGC-AGTCA-AAAATCCC-TT---A--GTAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGGTTGAAATGCAATTG-TTTT-----GTATAAG-TATAAAAGTTAT-T-GCT---AATTG----AGAGAGCGCAGACA--TGGTAAGCAGAATGTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAATTgggc
gi|11 : ctGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATGAAAGTTAA-T-GCT---AATTG----AGAGATAGCAGACA--TGGTAAGCAGAACGTGTAA-ACCC-----TAGGCCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----Agg
gi|12 : TAA-T-GCT---AATTG----TGAGAGAGCAGAC----------------GTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAAGCTTTACAGC----AGCTG-CAGAAGTAGA
gi|13 : gaaCG--TGG-AAGCAGA-CGTGTAATACCC-----CATGCCAGTT---TTGT----CAGAGTAAAGTGCAGGCCTAA-----ACAGC----AGCCGCCAAAAAC--AGC-GTGTAAACT
gi|14 : --TGGTAAGCAGGACGTGTAA-ACCC-----CATGCCAGTT---TTG-----CAGAGTAAAGTGCAGGCCTAA-----ACAGC----AGCCG-CAATAAC--ATC-GTGTAAACTgggc
gi|16 : gAAATGCAATTG-ATTT-----GTGTAAT-TATAAAAGTTAA-T-GCT---AAATA----AAATATAGCAGACA--TGGAAAGCAGGACGTGTAA-ACCgggct
gi|2 : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGT-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-TTA-T--G----C--ACTGCAGAGCTGCAAGCAGA-CGAGTTAGAACTTGCTCTAATTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGACTG--TAA--GTG-AA---AATAC--AC-T-AA-AAACAAA--G-TCAAATGACTAGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACACCAA-AATAAGCTGATTTTATT-T-C-T-CAT--GATAAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTTTTATTT--AA--AA--GGG--TCGT-AGTCA-AAAATCCC-T----A--GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCGATTG-TTTT-T---GTAATAG-TATGAAAGTTAA-T-GCT---AATTG----AGAGATAGCAAACA--TGGTAAGCAGAACGTGTAA-ACCC-----TAGG-CTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACTat
gi|3 : TTTAC---CGCTCTGCTTTTGCAGCTGCT--TTGGT-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G--TATT--G----C--ACTGCAGAGCTGCAAGCAGA-CGAGTTAGAACTTGCT-TA-TTCAGTC-TG-CAAAGCA-GACGT-ACTG----ACCAATCAGCTTCAATT-AAAAT-ATAAATCAAACT--TGG-GG--TGACTG--TAAG-GTG-AA---AATAC--AC-T-AA-AA-CAAA--G-TCAAATGGCTAGT-AAAGGAGAATATA-GGAA-TAAAAA-TGAACTTCTGAACACCAA-AAT-AGCTGATTTTATT-T-CTT-CAT--GATAAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTTTTATTT--AA--AA--GGG--TCGC-AGTCATAAAATCCT-T----ACGAAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTG-AATGCAATTGTTTTT-T---GTATAAG-TAT-GAAGTTAA-T-GCT---AATTG----AGAAGTAGCAGACA--TGGTAAGCAGAACGTGTAA-A-CC-----TAGG-CTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGCAGTGTAAACT
gi|4 : aTTTACCCACGCTCTGCTTTT-CAGCTGCTGCTTGGT-GCAGAG-TGCCAAAAGAAGAGCGTGTAATCTA-GG-G-CTA-TATG----C--ACTGCAGAGCTGCAAGCAGAACGAGTT-GAACTTGCTATAATTCAGTCCTG-CAAAGCA-GACGGTACTTTTTTACCATTCAGCTTCAATTAAAA-T-ATAAATCAAACTTATGG-GG--TGA--G--TAG--GTG-AA---A---C--AA-T-AC-AA-CTAAACG-TCAATTGGCTA-TAAAAGGAGAATATA-GGAA-TAAAATC-GAACTTCTGAACA-CAA-AATA-GCTGATTTTATT-T-C-TTCAT--G-TAAACCACCTT-T---CCAGCACCTTTGAAA-T-AC-------TT-TTT-AGC-TCTTATTA--AA--AA--GGG--TCGCTAGTCATAAAATTCC-TTAATAC-GAAATAGTTGTAGATAC--CT-CAAAATCAGAGATA--TGTAGGTTTGAGATGCAATTG-TTTT-TTGGGTATAAG-TAT-GAAGTTAA-TGGCT----ATTG----AGAG-TAGCAGACA--TGGT-AGC-GAA-GTGTAA-A-CC-----CAGG-CTGA----TTG-----CA-AGTAAAGTGCAGACCTAA-----CAAGC----A-CTG-CAAAA-CAGAGC-GTGTAAgggc
gi|5 : AC--AAGCTCTGCTTTTGCAGCTACT--TTGGA-GCAAAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-GGCTA-T--ATATAC--ACTGCAGACCTGCGAGCAGC-AGAATTAGAATTTGCTCTATTTCAATC-TG-CAAAGCA-GACGTAGCTG----ACCAATCAGCTTCAGTTAAAAATGATAAATCAAACT-AAGG-GG--TGTAT------------------ACAC--AC-T-AACAA-CAAA--G-TAAA---------------AGAA--------------AACTG-ACTTCTGAACAGAAA-GAAAAGATTATTGAATTGT-T-T-CAT--GATGAACCCCCGGATGAACCAG-ACCTTTGGAA-TCAG-------TG-CTC-AGACTCCTATTCA-AA--AA--AGG--TTAC-AGACA-AAAAGTCC-TA---A--GAAATA-TTGTAGATAAA-CT-AAAAG--AGAGATA--TGAGG------AATGCAGTGGAAAGT-T---GTAGAAG-TATAAAAGTTAA-T-GCT---TATTA----AGAGATAGCAGAAA--TAGAAAGCAGAACGTGTAA-ACCTGAATGAAGGTCTGCT---TTG-----CAAATAAAAGTGCAGACCT------------------------AAAGCAGAGC-GTGTAAACT
gi|6 : CT--TTG-A-GCAGAGCTGC-AAAA------------------------TA-T--G----T--CTTGCAGACCTGCAAGCAGA-CAAATTAGAACTTGCTCTATTTCAGTC-TGCCAAAGCAGGACGTAACTA----ACCAATCAGCTTTACTT-AAAATGATAAATCAAAAT-ATGG-GG--TG-AT------------------ACAC--AC-TAAA-AA-CAAA--G--AAAATGGC-GG-------------TA-GGAACT--AAACT-AACTTCTGAACAACAA-AA-A--------TTGCT-T-CAT-GATGCGATGAA------------CCAA-ACCTTTGGAA-T-TC-------TTCTTT-AGGCTCCTATTC--AA--AA---------------TA-AAAA----------A--GG---A-TTAAAGGCAAA-----AAGACCAGAGATAAGTGAGGGTCTGAAAT-TAATGG---TA-C---GT-TA---CATGGAATTTAGTT-GCTTAGGATTGATACAGAGAT--CATACAATTGATTTGTATAA-GTATAA-A---------AGGT-----------------------AAG-GC------AA-----AAATC----A--TA-TGGAAGCAGAAC-GTGTAAACg
gi|6 : ATACAATTG-ATTT-----GTATAAG-TATAAAAGGTAA-G-GC-------------AAAAAT--C--ATA--TGG-AAGCAGAACGTGTAA-ACCA-----CAGGTTTGCT---TCG-----CAGAGTAAAGAGCAGACCTAA-----AAAACTGTAAACTG-CAcacaggtttgcttcgcagagtaaagagcagacctaaaaaactgtaaactgcatggactttgcatcttaaatcatgtattt
gi|7 : ctttgagcagagctgcaaaatatgtcttgcagacctgcaagcagacaaattagaacttgctctatttcagtctgccaaagcaggacgtaactaaccaatcagctttacttaaaatgataaatcaaaatatggggtgatacacactaaaaacaaagaaaatggcggtaggaactaaactaacttctgaacaacaaaaattgcttcatgatgcgatgaaccaaacctttggaattcttctttaggctcctattcaaaataaaaaaggattaaaggcaaaaagaccagagataagtgagggtctgaaattaatggtacgttacatggaatttagttgcttaggattgatacagagatcGTTTAC--ACGCTCTGCATTTGCAGCTGTT--TTGGA-ACAGAGCTGC-AAAAGAAGAACGTGTAAACTAAGG-G-CTG-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAATTAGAACTTGGTCTATTTCAGTC-TG-CATAGCA-GACGTTACTG----ACCAATAAGCTTCAATGAAAAGTGATAAATCAAGAT-AT-G-AG--TGGAAG--TAATGGCG-AATATAACAC--AC-T-AA-AA-ACAA--G-TAAAATGGTAGGTAAAGAGA-AATAAA-GGAA-CTAAACCTG-ACTTCTGAACAGCAAGAATAAA-TAAATTAATTGT-C-T-CAT--GATGAA------------CCAG-ACGTTTAGAA-T-ACATGTACTTC-TTC-AGTCTCCTATTC--AA--AA--AAGATTTGC-AAGCA-AACAGCCC-TA---A--GAAATA-GTGTAGATAAA-CTGCAAG---AAATATA--TTAGGGTCTGGAATGCAATGG-Ttggactttgcatcttaaatcatgtattt
gi|8 : CAGGTTAC--AAGCTCTGCTTTTGCCGCTGCT--TTAAA-GCAGAGTTGC-AAAAGAAGGGCATGTAAACTA-GGAG-CTA-T--C----T--AATGCAGACTTACAAGCAAA-CGAAATAGAACTT-----ATTTCAGTA-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCCAGTAAAAATGATAAATCAAATT-ATGG-GG--TGAATG--TAAA-GTG-GA---AATAC--TC-T-AA-AA-CGAA--G-TAAAATGGCTGGTAAAAAGAGAATATA-GAAA-TAACAACTG-ACTTTTGAACACCAA-AATAAACTGAATTTATT-TAT-T-CAT--GATGAACCACCTT-T---CCAG-ACATTTGAAG-T-AC-------TT-TTTCAGCCTCCTGTTTAAAA--AA--GGA--CTGT-AGTTA-AAAAGCCC-T----AC-GAAATA-TTTTAGATAAT-CT-CAAAATCAGAGATT--TGAGGGTTTGAAATAC--TTT-TTTTAT---ATATAAG-CATAAAAGTTAA-T-GCT---AATTG----aagttatatggaatcaagttgcttggggttgata
gi|9 : TTAC--AAGC-CTGCTTT-GCCGCTGCT--TTAAAAGCAGAG-TGC-AAAAGAAG-GCGTGTAAACTA-GA-G-CTA-T-------CTTAATGCAAAC--G-ACGCA-A-CGAAT-AGA-------CTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCCA-TAAAAATAGTAAATCAAATT-ATGGTGGAATTAATGTATAA--GTG-GA---AATACTTCT-T-AA-AA-CGAA--GTTAAAATGGC-GGTAAAAAGAGAATATACGAAA-TAACAACTT-ACTTTTAAACACCAA-AATAA-CTGAAGTTATA-T---T-CAT--GATGAACCACCTG-T---CCA--ACATTTGAAAGT-AC-------TT-TTTCAGCCTCCTTTTA--AAATAA--GGA--T-G--AGGTA-AAAAGCCC-T----A--CGAATA-TTTTAGATAAGTCT-CAAAATCAGAGAT---TGA-GGTTTGAAATAC--TTT-TTTTAT---ATATAAGCCATAAAAGTTAA-T-GCT---AATT
blockSeqs : CC GC AA C C A A GC T ATATA TT A TC A C C G A TTTT A G C T T AA AC GTA TG AATAT T TT . A C A A AC T T A G C C A GA C G AGC T G CT T GC C GATGAA C G C ATGTACT C C AA AT AA ATTT CT T T . TAATAC G T G AG TT TTGG C A T G TAG ATAC C AT T T T C GAATG T . T GCTTT TGTA G C A
blockSeqs : . . T C . . . T . ATG . . TA A . . . T . A G C . . . AC G G AA T . . . . . A . . T A G . . A GA C . AGC T G CA . . C TT . . . . . C A . . CT C T T . ACG . . . . AA AT . G . . . . A . T C . C . C . . . . G . .
blockSeqs : . . T C . . . C . G . . TC T . . . A . A G C . . . TA G A AA C . . . . . T . . T A G . . A GA G . AGA T . AT . . C TT . . . . . . . . . TC T . T . TA . . . . T AT . A . . . . A . T C . C . T . . . . G . .
blockSeqs : . . T C . . . C . G . . TC T . . . A . A G C . . . GA G . AA C . . . . . A . . A A A . . T G A . AAC T . C . . C TT . . . . . . . . . TC C . T . AA . . . . T T . G . . . . A . A C . C . C . . . . G . .
blockSeqs : . . A C . . . C . G . . TC T . . . T . A G A . . . AA G . GA C . . . . . A . . T A A . . A A G . GC A . C . . C TT . . . . . . . . . TC C . G . AA . . . . A T . A . . . . A . T C . C . C . . . . G . .
blockSeqs : . . A T . . . C . G . . T T . . . A . A A A . . . AA G . GA T . . . . . C . . . . A . . A G C . AA A . T . . C GT . . . . . . . . . TT C . G . AC . . . . T T . G . . . . A . T C . C . T . . . . G . .
blockSeqs : . . A . . . . . . C . . C T . . . A . . . T . . . A . . . T . . . . . G . . . . . . . . G C . AC A . C . . . . . . . . . . . . . CT T . G . A . . . . T T . A . . . . A . T C . C . T . . . . A . .
blockSeqs : . A . . . . . . . . . . . . . . . . . . T . . . A . . . . . . . . . G . . . . . . . . T . . . . . . . . . . . . . . . . . . . T . . G . A . . . . A C . A . . . . A . A C . C . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . A . . . . T . . A . . . . . . T C . C . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : TC ** AA**** C** ** AA***** T* *** *****
originalCons : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGN-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-CTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGCTCTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGAATG--TAA--GTG-AA---AACAC--AC-T-AA-AA-CGAA--G-TAAAATGGCTGGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACANCAA-AATAAGCTGATTTTATT-T-C-T-CAT--GATGAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTCCTATTC--AA--AA--GGG--TCGC-AGTCA-AAAATCCC-T----A--GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATAAAAGTTAA-T-GCT---AATTG----AGAGATAGCAGACA--TGGTAAGCAGAACGTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACT
finalCons : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGN-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-CTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGCTCTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGAATG--TAA--GTGAA----AACAC--AC-T-AA-AA-CGAA--G-TAAAATGGCTGGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACANCAA-AATAAGCTGATTTTATT-TC--T-CAT--GATGAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTCCTATTC--AA--AA--GGG--TCGC-AGTCA-AAAATCCC-TAA-----GAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCAATTGT-TTT-T---GTATAAG-TATAAAAGTTAA-T-GCT---AATTG----AGAGATAGCAGACA--TGGTAAGCAGAACGTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATATATATATATAATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|17 ): ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Alignments
lowQualScore : 1111111 11 11 111 111111 1111111 11 111111111 11 11111 11111
lowQualScore : 66 66 55 2 4 0 4 4 66 4 5555555 66 4 55 4 4 4 4 2 9999 1 5 1 4 4 66 22 777 99 888888 2 66 4 8 4 4 66 4 7 0 1 2 0 4 4 2 99 5 4 444 2 8 888 4 66 1 000000 4 4 4 3333333 4 8 55 55 55 8888 44 0 8 5 333333333 4 4 4 55 00 77777 3 2 3 3 555 7777 2 44 4 2 3 1 88888 7 555 11111 88888 7777 2 3 0 4
lowQualScore : .. .. .. . . . . . .. . ....... .. . .. . . . . . .... . . . . . .. .. ... .. ...... . .. . . . . .. . . . . . . . . . .. . . ... . . ... . .. . ...... . . . ....... . . .. .. .. .... .. . . . ......... . . . .. .. ..... . . . . ... .... . .. . . . . ..... . ... ..... ..... .... . . . .
lowQualScore : 99 11 44 9 4 8 4 4 33 4 7777777 11 4 77 9 4 4 4 2 4444 9 7 9 4 4 11 88 222 44 222222 7 11 4 9 4 4 11 4 4 1 8 7 1 4 4 0 33 3 4 999 3 9 777 4 11 1 222222 0 0 0 0000000 0 0 00 55 55 9999 77 8 0 5 444444444 0 0 0 00 77 00000 3 9 1 1 444 1111 1 22 4 1 1 5 33333 0 888 77777 33333 7777 8 6 8 4
consensus : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGN-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-CTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGCTCTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGAATG--TAA--GTG-AA---AACAC--AC-T-AA-AACGAA--G-TAAAATGGCTGGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACANCAA-AATAAGCTGATTTTATT-T-C-T-CAT--GATGAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTCCTATTC--AA--AA--GGG--TCGC-AGTCA-AAAATCCCT-AA---G-AAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATAAAAGTTAA-T-GCT---AATTG----AGAGATAGCAGACA--TGGTAAGCAGAACGTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACT
Reference ( family-5174 ) : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGN-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-CTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGCTCTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGAATG--TAA--GTG-AA---AACAC--AC-T-AA-AACGAA--G-TAAAATGGCTGGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACANCAA-AATAAGCTGATTTTATT-T-C-T-CAT--GATGAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTCCTATTC--AA--AA--GGG--TCGC-AGTCA-AAAATCCCT-AA---G-AAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATAAAAGTTAA-T-GCT---AATTG----AGAGATAGCAGACA--TGGTAAGCAGAACGTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACT
gi|1 : AGTTTAC--ACGCTCTGCTTTTGCAGCCGTT--TTGGT-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-TTA-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAGTTAGAACTTGC----------TC-TG-CAAAGCA-AACGTAACTG----ACCAATCAGCTTCAATTAAAAACTATAAATCAAGAT-ATGG-GG--TGAATG--TAAG-GTGAAA---AAAAC--ACTT-AA-AACAAA--G-TAAAATGGCTGATAAAAAGAAAATATA-GGAA-TAAAAACTT-ACTTCTGAACAGCAA-AATAAGCTGATGTTATT-TAT-T-TAT--GATGAACCACCTT-T---CCAG-ACCTTTGGAA-C-AC-------TT-TTT-AACCTCCTATTCAAAA--AA--GGG--CTGC-AGTCA-AAAATCCCT-TA---A-TAATA-TTGTAGATAAA-CT-CAAAATCAGAGGTA--TGAGGGGTTGAAATGCAATTG--TTT-T---GTATAAG-TATAAAAGTTAA-T-GCT---AATTG----AGAGAGAGCAGACA--TGGTAAGCAGAATGTGTAA-ACCC-----CAGGTCTGCTAAAGTGCAGGCCAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAATT
gi|10 : G-ACCTTTGAAA-C-AC-------TT-TTT-AACCTCCTATTC--AA--AAAAGGG--CTGC-AGTCA-AAAATCCCT-TA---G-TAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGGTTGAAATGCAATTG-TTTT-----GTATAAG-TATAAAAGTTAT-T-GCT---AATTG----AGAGAGCGCAGACA--TGGTAAGCAGAATGTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAATTgggc
gi|11 : ctGAGATA--TGAGGGTTTGAAATGCAATTG-TTTT-T---GTATAAG-TATGAAAGTTAA-T-GCT---AATTG----AGAGATAGCAGACA--TGGTAAGCAGAACGTGTAA-ACCC-----TAGGCCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----Agg
gi|12 : TAA-T-GCT---AATTG----TGAGAGAGCAGAC----------------GTGTAA-ACCC-----CAGGTCTGCT---TTG-----CAGAGTAAAGTGCAGACCTAAGCTTTACAGC----AGCTG-CAGAAGTAGA
gi|13 : gaaCG--TGG-AAGCAGA-CGTGTAATACCC-----CATGCCAGTT---TTGT----CAGAGTAAAGTGCAGGCCTAA-----ACAGC----AGCCGCCAAAAAC--AGC-GTGTAAACT
gi|14 : --TGGTAAGCAGGACGTGTAA-ACCC-----CATGCCAGTT---TTG-----CAGAGTAAAGTGCAGGCCTAA-----ACAGC----AGCCG-CAATAAC--ATC-GTGTAAACTgggc
gi|16 : gAAATGCAATTG-ATTT-----GTGTAAT-TATAAAAGTTAA-T-GCT---AAATA----AAATATAGCAGACA--TGGAAAGCAGGACGTGTAA-ACCgggct
gi|2 : CAGTTTAC--ACGCTCTGCTTTTGCAGCTGCT--TTGGT-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G-TTA-T--G----C--ACTGCAGAGCTGCAAGCAGA-CGAGTTAGAACTTGCTCTAATTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCAATTAAAAATGATAAATCAAACT-ATGG-GG--TGACTG--TAA--GTG-AA---AATAC--AC-TAAA-AACAAA--G-TCAAATGACTAGTAAAAGGAGAATATA-GGAA-TAAAAACTGAACTTCTGAACACCAA-AATAAGCTGATTTTATT-T-C-T-CAT--GATAAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTTTTATTT--AA--AA--GGG--TCGT-AGTCA-AAAATCCCT--A---G-AAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTGAAATGCGATTG-TTTT-T---GTAATAG-TATGAAAGTTAA-T-GCT---AATTG----AGAGATAGCAAACA--TGGTAAGCAGAACGTGTAA-ACCC-----TAGG-CTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGC-GTGTAAACTat
gi|3 : TTTAC---CGCTCTGCTTTTGCAGCTGCT--TTGGT-GCAGAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-G--TATT--G----C--ACTGCAGAGCTGCAAGCAGA-CGAGTTAGAACTTGCT-TA-TTCAGTC-TG-CAAAGCA-GACGT-ACTG----ACCAATCAGCTTCAATT-AAAAT-ATAAATCAAACT--TGG-GG--TGACTG--TAAG-GTG-AA---AATAC--AC-T-AA-AACAAA--G-TCAAATGGCTAGT-AAAGGAGAATATA-GGAA-TAAAAA-TGAACTTCTGAACACCAA-AAT-AGCTGATTTTATT-T-CTT-CAT--GATAAACCACCTT-T---CCAG-ACCTTTGAAA-T-AC-------TT-TTT-AGCCTTTTATTT--AA--AA--GGG--TCGC-AGTCATAAAATCCTT-AC---GAAAATA-TTGTAGATAAA-CT-CAAAATCAGAGATA--TGAGGGTTTG-AATGCAATTGTTTTT-T---GTATAAG-TAT-GAAGTTAA-T-GCT---AATTG----AGAAGTAGCAGACA--TGGTAAGCAGAACGTGTAA-A-CC-----TAGG-CTGCT---TTG-----CAGAGTAAAGTGCAGACCTAA-----AAAGC----AGCTG-CAAAAGCAGAGCAGTGTAAACT
gi|4 : aTTTACCCACGCTCTGCTTTT-CAGCTGCTGCTTGGT-GCAGAG-TGCCAAAAGAAGAGCGTGTAATCTA-GG-G-CTA-TATG----C--ACTGCAGAGCTGCAAGCAGAACGAGTT-GAACTTGCTATAATTCAGTCCTG-CAAAGCA-GACGGTACTTTTTTACCATTCAGCTTCAATTAAAA-T-ATAAATCAAACTTATGG-GG--TGA--G--TAG--GTG-AA---A---C--AA-T-AC-AACTAAACG-TCAATTGGCTA-TAAAAGGAGAATATA-GGAA-TAAAATC-GAACTTCTGAACA-CAA-AATA-GCTGATTTTATT-T-C-TTCAT--G-TAAACCACCTT-T---CCAGCACCTTTGAAA-T-AC-------TT-TTT-AGC-TCTTATTA--AA--AA--GGG--TCGCTAGTCATAAAATTCCTTAATACG-AAATAGTTGTAGATAC--CT-CAAAATCAGAGATA--TGTAGGTTTGAGATGCAATTG-TTTT-TTGGGTATAAG-TAT-GAAGTTAA-TGGCT----ATTG----AGAG-TAGCAGACA--TGGT-AGC-GAA-GTGTAA-A-CC-----CAGG-CTGA----TTG-----CA-AGTAAAGTGCAGACCTAA-----CAAGC----A-CTG-CAAAA-CAGAGC-GTGTAAgggc
gi|5 : AC--AAGCTCTGCTTTTGCAGCTACT--TTGGA-GCAAAGCTGC-AAAAGAAGAGCGTGTAAACTA-GG-GGCTA-T--ATATAC--ACTGCAGACCTGCGAGCAGC-AGAATTAGAATTTGCTCTATTTCAATC-TG-CAAAGCA-GACGTAGCTG----ACCAATCAGCTTCAGTTAAAAATGATAAATCAAACT-AAGG-GG--TGTAT------------------ACAC--AC-T-AACAACAAA--G-TAAA---------------AGAA--------------AACTG-ACTTCTGAACAGAAA-GAAAAGATTATTGAATTGT-T-T-CAT--GATGAACCCCCGGATGAACCAG-ACCTTTGGAA-TCAG-------TG-CTC-AGACTCCTATTCA-AA--AA--AGG--TTAC-AGACA-AAAAGTCCT-AA---G-AAATA-TTGTAGATAAA-CT-AAAAG--AGAGATA--TGAGG------AATGCAGTGGAAAGT-T---GTAGAAG-TATAAAAGTTAA-T-GCT---TATTA----AGAGATAGCAGAAA--TAGAAAGCAGAACGTGTAA-ACCTGAATGAAGGTCTGCT---TTG-----CAAATAAAAGTGCAGACCT------------------------AAAGCAGAGC-GTGTAAACT
gi|6 : CT--TTG-A-GCAGAGCTGC-AAAA------------------------TA-T--G----T--CTTGCAGACCTGCAAGCAGA-CAAATTAGAACTTGCTCTATTTCAGTC-TGCCAAAGCAGGACGTAACTA----ACCAATCAGCTTTACTT-AAAATGATAAATCAAAAT-ATGG-GG--TG-AT------------------ACAC--AC-TAAA-AACAAA--G--AAAATGGC-GG-------------TA-GGAACT--AAACT-AACTTCTGAACAACAA-AA-A--------TTGCT-T-CAT-GATGCGATGAA------------CCAA-ACCTTTGGAA-T-TC-------TTCTTT-AGGCTCCTATTC--AA--AA---------------TA-AAAA------AG---G-----A-TTAAAGGCAAA-----AAGACCAGAGATAAGTGAGGGTCTGAAAT-TAATGG---TA-C---GT-TA---CATGGAATTTAGTT-GCTTAGGATTGATACAGAGAT--CATACAATTGATTTGTATAA-GTATAA-A---------AGGT-----------------------AAG-GC------AA-----AAATC----A--TA-TGGAAGCAGAAC-GTGTAAACg
gi|6 : ATACAATTG-ATTT-----GTATAAG-TATAAAAGGTAA-G-GC-------------AAAAAT--C--ATA--TGG-AAGCAGAACGTGTAA-ACCA-----CAGGTTTGCT---TCG-----CAGAGTAAAGAGCAGACCTAA-----AAAACTGTAAACTG-CAcacaggtttgcttcgcagagtaaagagcagacctaaaaaactgtaaactgcatggactttgcatcttaaatcatgtattt
gi|7 : ctttgagcagagctgcaaaatatgtcttgcagacctgcaagcagacaaattagaacttgctctatttcagtctgccaaagcaggacgtaactaaccaatcagctttacttaaaatgataaatcaaaatatggggtgatacacactaaaaacaaagaaaatggcggtaggaactaaactaacttctgaacaacaaaaattgcttcatgatgcgatgaaccaaacctttggaattcttctttaggctcctattcaaaataaaaaaggattaaaggcaaaaagaccagagataagtgagggtctgaaattaatggtacgttacatggaatttagttgcttaggattgatacagagatcGTTTAC--ACGCTCTGCATTTGCAGCTGTT--TTGGA-ACAGAGCTGC-AAAAGAAGAACGTGTAAACTAAGG-G-CTG-T--G----C--ACTGCAGACCTGCAAGCAGA-CGAATTAGAACTTGGTCTATTTCAGTC-TG-CATAGCA-GACGTTACTG----ACCAATAAGCTTCAATGAAAAGTGATAAATCAAGAT-AT-G-AG--TGGAAG--TAATGGCG-AATATAACAC--AC-T-AA-AAACAA--G-TAAAATGGTAGGTAAAGAGA-AATAAA-GGAA-CTAAACCTG-ACTTCTGAACAGCAAGAATAAA-TAAATTAATTGT-C-T-CAT--GATGAA------------CCAG-ACGTTTAGAA-T-ACATGTACTTC-TTC-AGTCTCCTATTC--AA--AA--AAGATTTGC-AAGCA-AACAGCCCT-AA---G-AAATA-GTGTAGATAAA-CTGCAAG---AAATATA--TTAGGGTCTGGAATGCAATGG-Ttggactttgcatcttaaatcatgtattt
gi|8 : CAGGTTAC--AAGCTCTGCTTTTGCCGCTGCT--TTAAA-GCAGAGTTGC-AAAAGAAGGGCATGTAAACTA-GGAG-CTA-T--C----T--AATGCAGACTTACAAGCAAA-CGAAATAGAACTT-----ATTTCAGTA-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCCAGTAAAAATGATAAATCAAATT-ATGG-GG--TGAATG--TAAA-GTG-GA---AATAC--TC-T-AA-AACGAA--G-TAAAATGGCTGGTAAAAAGAGAATATA-GAAA-TAACAACTG-ACTTTTGAACACCAA-AATAAACTGAATTTATT-TAT-T-CAT--GATGAACCACCTT-T---CCAG-ACATTTGAAG-T-AC-------TT-TTTCAGCCTCCTGTTTAAAA--AA--GGA--CTGT-AGTTA-AAAAGCCCT-AC---G-AAATA-TTTTAGATAAT-CT-CAAAATCAGAGATT--TGAGGGTTTGAAATAC--TTT-TTTTAT---ATATAAG-CATAAAAGTTAA-T-GCT---AATTG----aagttatatggaatcaagttgcttggggttgata
gi|9 : TTAC--AAGC-CTGCTTT-GCCGCTGCT--TTAAAAGCAGAG-TGC-AAAAGAAG-GCGTGTAAACTA-GA-G-CTA-T-------CTTAATGCAAAC--G-ACGCA-A-CGAAT-AGA-------CTATTTCAGTC-TG-CAAAGCA-GACGTAACTG----ACCAATCAGCTTCCA-TAAAAATAGTAAATCAAATT-ATGGTGGAATTAATGTATAA--GTG-GA---AATACTTCT-T-AA-AACGAA--GTTAAAATGGC-GGTAAAAAGAGAATATACGAAA-TAACAACTT-ACTTTTAAACACCAA-AATAA-CTGAAGTTATA-T---T-CAT--GATGAACCACCTG-T---CCA--ACATTTGAAAGT-AC-------TT-TTTCAGCCTCCTTTTA--AAATAA--GGA--T-G--AGGTA-AAAAGCCCT-AC---G--AATA-TTTTAGATAAGTCT-CAAAATCAGAGAT---TGA-GGTTTGAAATAC--TTT-TTTTAT---ATATAAGCCATAAAAGTTAA-T-GCT---AATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAATATATATATATAATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|17 ): ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG