lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 11 1111 333333 11111 11 222 111 333333333 111111 22222222222 111 111 1111 22 111111 111111 111111 111 11 11111 111 11 1111 222 1111 11 111 11111 33333333333333 1 111 11 1 111 11 1 111111111 11 111 11 222222222222222 2222 1111111111 8888888888888888888888888888888888888888 222222 111111111 11 1 1111 11111 1111 11111 22222222222 111 11 333333333 2222222 11111 111 1111 1111 11 11 11 1111 22 111111111
lowQualScore : 6 33 0 44 555 00 5 2222 0 5 0 999 444444 3 44444 11 77 5 111 5 222 5 9 777 6 5 5 000000000 222222 3 3 99999 3 55 3 55 9999 00000000000 000 3 0 4 0 55 4 2 4 777 4 4 9999 4 33 66 5 0 888 5 444444 777 888 5 5 5 666666 99 77 666666 77 000 5 4 00 66 8 22 4 66 4 11111 111 6 1 0 44 4444 000 6 4444 6 6 99 99 2 55 6 000 3 66666 7 6 99999999999999 7 111 44 66 5 5 1 5 77 5 5 5 555 5 5 00 0 1 5 77 5 5 5 888888888 33 000 11 999999999999999 5 6666 77 5 4 6666666666 5 6666666666666666666666666666666666666666 3 777777 6 888888888 6 1 6 11 6 0 4444 6 1 5 99999 9 9999 88888 33333333333 4 1 4 4 4 2 9999 333 5 33 777 444444444 777 6 2222222 22222 5 6 6 99 111 6 6 6 6 8 8 5555 1 6 3 4444 6 11 5 99 5 33 77 5 77 5 5 00 5 5 5 5 3 77 5 77 77 5 5 5 5 77 77 5 5 0 5 5 77 5 77 4444 6 5 00 0 2 4 77 4 000000000 33 5 4
lowQualScore : . .. . .. ... .. . .... . . . ... ...... . ..... .. .. . ... . ... . . ... . . . ......... ...... . . ..... . .. . .. .... ........... ... . . . . .. . . . ... . . .... . .. .. . . ... . ...... ... ... . . . ...... .. .. ...... .. ... . . .. .. . .. . .. . ..... ... . . . .. .... ... . .... . . .. .. . .. . ... . ..... . . .............. . ... .. .. . . . . .. . . . ... . . .. . . . .. . . . ......... .. ... .. ............... . .... .. . . .......... . ........................................ . ...... . ......... . . . .. . . .... . . . ..... . .... ..... ........... . . . . . . .... ... . .. ... ......... ... . ....... ..... . . . .. ... . . . . . . .... . . . .... . .. . .. . .. .. . .. . . .. . . . . . .. . .. .. . . . . .. .. . . . . . .. . .. .... . . .. . . . .. . ......... .. . .
lowQualScore : 2 99 8 22 444 66 0 9999 1 0 5 000 000000 1 33333 66 22 0 444 0 999 0 8 111 0 0 0 666666666 111111 6 6 11111 6 00 6 00 9999 33333333333 777 6 9 0 5 55 0 1 4 333 4 4 0000 4 00 99 0 1 888 0 444444 111 888 7 7 7 444444 00 99 444444 99 000 7 4 66 11 9 00 4 11 4 11111 777 7 0 7 55 2222 000 7 2222 7 7 22 22 5 88 7 888 2 77777 8 7 33333333333333 0 777 77 44 7 0 4 7 99 7 7 7 777 7 7 00 7 4 7 99 7 7 7 999999999 66 000 11 999999999999999 7 0000 99 7 3 7777777777 7 9999999999999999999999999999999999999999 5 777777 7 333333333 7 7 7 00 7 5 2222 7 0 0 44444 4 1111 11111 00000000000 4 9 4 4 4 9 4444 888 0 88 000 000000000 111 0 9999999 88888 0 7 7 22 777 7 7 7 7 4 0 6666 5 7 5 2222 7 00 7 66 7 11 11 7 99 7 7 77 7 7 7 7 7 99 7 99 44 7 7 7 7 99 99 7 7 7 7 7 99 7 99 2222 7 7 77 7 9 9 99 0 777777777 44 7 0
consensus : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATA---TTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCC----T-GTTGTTAATGGATG-----GTATAATCGTAA-TTTTC-A-CAAA--AAA-TC--T-TAAGGTTTTGGTC--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCGCC--G-ATT-----T-----TTTT--GCACGTTC-GAAAAGGGC-ACTTCGGTTGA--AAT-TNTGCTC-TA--TATTT-TA-TTT---TA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AA-CAA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT--CAT-AAATAACATT-TT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTNGAA----ATT--TTC-AAAAA----CGG-C-AA--CG--TCGGA--TG-A--TAATG-----CGGCG-CACCGAATTGTAATTCAATACTG---T---G-NGGAGCGAGGTTTGG-C-CCCN-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-AGGCG---------C-GTG-G--TAG--AC-TGACAA-A----A---AGAG-ACGAAAAA---------NTT----------------------------AAAAATCG----GGTG-ATGGAC---G-----TCA-TAC-T--GGA-CTTTGCAT----TCT-TTCC-TGCATT-----AAAAAATC--ATTTGTGAG---G-AAAGAGAT-T-T--TA---CGT-GACTGA-AATT-CG-CCGC----GAAGT---AT-CA--CAA--TTT-C-ACA---TCTCTTNGCTCAGAAA---CG--TTTT---T-AATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTGTC-ACAT--AGTGGACGGTATTTTG-AGAAGG----AAT-GAATATGACGTT--AACAGACA-TCAC-GA-AGTT-ACGTTTTG-ACGTC--GTCGGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTT-AACAAAAAA-TATCT-AAAANG---------TTCGCGT--TTTTCT-GGGACAACCCT-CGTA
Reference ( gi|2 ) : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATA---TTTCAT--AAACTA-C---ATCACCAAACT-TTACTAAATTT-T-GCC----A-ATTGTTAGTGGATG-----GTATAATCGTAA-TTTTC-A-CAAG--AAA-TA--T-TAAGATTTTGGTC--ATAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACC--A-ATT-----T-----TTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--AAT-TTTGCTC-TT--TATTT-TA-TTG---TA-CTGACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AA-CAA-ACA------TGTCAA-TA--TAAA------A--TTAT---A-TAAAATGA--CGT--CAT-AAATAACATT-TT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTAAGAA----ATG--TTC-AAAAA----TGG-C-AA--CG--TTGGA--TG-A--TAATG-----CGGTG-CACCGAATTGTAATTCAATACTG---C---G-AGGCACGAGGATTGG-C-CCCA-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGA-AAG-ATGTG---------C-GTG-A--TAG--AC-TGACAA-A----A---AGAG-ACGAAAAA---------AATA------GGG-------------ACGAAAAAAATAG----GGTG-ATGGAC---G-----TCA-TAC-T--AGA-TTTCGCAT----TTT-TTCC-TGCATT-----AAAAAATC--GTTTGTGAG---G-AAAGAGAT-T-T--TA---CGT-GACTGA-AATT-CG-CCGC----GAAGT---AT-CA--CAA--TTT---ACA---TCTCTTAGTTTAGAAA---CA--TTTT---T-AATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTTTC-ACAT--ATTGGACGGTATTTTG-AGAAAG----AAT-GAATATGACGTT--AACAGACA-TCAC-AA-AGCT-CCGTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGCT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTT-CACAAAAAA-TATAT-GAAATG---------TTCGCGT--TTTTCT-GGGACAACCCT-CGTA
gi|3 : GGGTGTCCAGAGAAAA--ACGCGAACTTTTTAG--ATA---TTTCAT--AAACTA-C---GTCACCAAACT-TTCCTAAATTT-T-GCC----T-GTTGTTAATGAATG-----ATATAATCGTAT-TTTTT-AACAA----AG-TC--T-TAAGGTTT-GGTG--ACAAA--AA-T-A---------TGAA---AA-CGGCATTTAAAAG--TGC-AAA-----ATATC-AAT--AAT-TG--GCGCACC--G-ATT-----T-----TTTTTTGCACGTTC-TAAAAGGGC-ACTTCGGTTAA--AGT-TGTGCTC-TA--TATTT-TA-TTT---TA-CAAACGTTATATTT--T-AAATA--AT---T-AT-------TCAATAAAACCGT--TAT---GGTCT-AA-CAA-ACA------TCTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT--CAT-AAATAACATT-TT--TAT-GA-----CGTTATACGTA---CA-GACACCTTCTGTTAGAA----ATT--TTC-AAAAC----TGG-CAAA--CG--TCGGA--TG-A--TAA-G-----CGGCG-CACCGAATTGTAATTCAATACTG---T---G-TGGAGCGAGTTTTGG-CTCCCT-ATTCAAACTAAAA-TAAAGA-TGG-AACGA-TAGAAGCGACT--C-AA-A-CA---T-TGTCT-CGGA-CATT-GGTAT--A-CA-TGA---ACAAAAAGT-TT-AAGGATGGTTGG-AGT--A------GT-ATCC--TA---TGG-AAG-GGGTG---------C-GTG-G--TAG--AC-TGACAA-A----A---AGAGAACGAAAAA---------CTT----------------------------AAAAATCA----GGTG-ATGGAC---G-----TCA-TAC-T--GGA-CTTTGCAT----TCT-TTCC-TGCATT-----AAAAAATC--A-TTGTGAG---G-AAAGAGAT-T-T--CA---TGT-GACTGA-AATT-CG-CCGC----GAAGT---AT-CA--CAA--TTTACCACA---TCTCTTAGTTCAGAAA---TG--TTTT---T-AATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTGTC-ACAT--AGTGGACGGTA-TTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACA-TCAC-GA-AGTT-ACG-ATTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATT--TG-TATGA-CTG-GTTAAAG-TGTGATAAAAATGTT--A-TTA-CAGACAAGATATA--T---AAATATT-CACAG-CGA-TAT--TCAG--AAAA-TGAATCATTTTTGTGTGGT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTT--AAAAAAAA-TATAT-GAAATGTTCCGTTTTTTCGCGT--TTTTCT-GGGACAACCCT-CGTA
gi|4 : GGTTGTCCC-AGAAAA--ACGCGAAC-ATTCAA--ATAATTTTTGTT--AAACTt
gi|1 : gggtttgtcccagaaaacgcgaactttttagatatttcattaaactacgtcaccaaacttttcaaaatttgccttgttgttaatgaatgattaatcgtattttgtcaaaaaatcttaaggttttggtgacaaacaaaatatgaaacggaatttaaaaggtgcaaatatcagtaatatggcgcaccgatttttgcacgttctaaaatggcacttcggttaaagttgtgctctatattttattttacaaacgttatattttaaatataattatatgaaaaaagcgttatgttctaaccaaacatgtcagtataaaattatataaaataacgtataaataacattttatgacgttatacgtacgaacacttttgttagaaattttcaaaaaatggcagcgtcggatgataatgcggcgcaccgaattgtaatcaatattgtgtgggcaggtttggccccctattcaaactaaaataaagatggaaacgatagaacgactcaaacatgtttctcggacattggtatacagcatgacacaaaaagtttaaggatggttggagtagtaatcctatggaaggggggcggtggactgacgaaaaacttaaaaatcaggtgatggacgtcatactggactttgcatttcttcctgcattaaaaaatcatttgtgaggaaagagatttcacgtgactgaaattgcgccgcgaagtatcagccaatttaccacatctcttagttcagaaatgtttttaatgcatggtgaagcgatatgagaaatgtttcacacatagtggacggcattttgagaaggaataaatatgacgttaacagacattcacgaagttacttttaacatcgtcagcgttgcgccggagctattatgtaagactggttaaagtgtgataaaatgttatttacagacaaaatgcataaatatttcacagcgatattcagaaatgatcattttgttgtgtaccaaataataatgatatactcagaGGTTGTCCC-AGAAAA--AGCCGAACATTCTAT--ATA---CTTctc
gi|9 : ggtcccagaaaaaaacgcgaactttttagatattcataaactagcgtcaccaaactttactaaatttgtgcctaattgttagtggatggtataatcgtaattttttacaaaaaataattcaagtttttggtttgacaaacaaataatgagaacaacggcatttaaaagtggcaaaaatatcagtaatcgaagcgcaccggattttttttgcacgttcgaaaagagcacttcggttgatcaatctttgctgctaatatttatattaagttatcaaacattatatttaataaaatataatttgtataacaataaaagtgtggtatggtctaacaacatatcaatatttaaaattttatattaaaatgaccgtcataaataacatttttctatggacgttattattacataactcttctttaggaaattctcaaaaaatcccggcaacgtatcagactgagatgcggcgccaccgaattgtaattcaatactgtttggaagacgaggttaggccccaattcaaacaaaaagaaagattgtaaacgattagaacgtcacaaaacagtgtctcggatcattgggtatacacattgacccataaagggtgttaaggatgattggtaatggtaattctttatgtaagcatggcggtgtgtagacttgacaaaaaatagagacgaaaaaattaaaaatagggtgatgtacgttcgattatctaaagattttgcattcgtttctgcattaaaaatcatatctgtgaggtaaagggagtttacgttactgaaattcgtccgcgaagtatcacaacctttccgacatcttcttttagttcagaaacgttgtttatgctatgggatgaaacactgagtagtgaagaaatgtttttctacatgagtgggactattttgagaaaaaaacaatggaatatgacgtttaaacagacatcacgatagttacggtttggacgtcgtgtcagcgtttgctccggcagcctattattgttaagagctgcgttaaagtgtgataaaaatgcttgatttagcagccaaaatgcaatttaaaatttcacagccgagtattctcaggaaaaatgatcattttttgtgtaaccaaagatagataaagagatattagctagaagtttcacaaaaGGTTGTCCC-AGAAAA--ACGCGAACATTTCAT--ATA---TTTctacgtatt
gi|10 : tgactgaaatttgccgcgaagtatcacaatttacacatctctttgctcagaaatgtttttaatgcatgggtgatgagcgatatgagaaatgtttgtcacatagtggacggtattttgagaaggaataaatatgacgttaacagacatcatgaaattacgttttgacgtcgtcagagttgcgccggcagctattatgtaagactggttaaagtgtgataaaaatgttatttacagactaaatgcattaaaaatttcacagggatttcaaaaaatgatcattttgttgtgtaccaaataataatgatatactagaagtttaacaaaGGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATA---TTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCC----T-ATTGTTAGTGGATG-----GTATAATCGTAA-TTTTC-A-CCAA--AAA-TA--T-CAAGGTTTTGGTT--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACC--G-ATT-----T-----TTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--AAT-TTTGCTC-TA--TATTT-TA-TTG---TA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGTGT--TAT---GGTCT-AA-CAA-ACA------TGTAAA-TA--TAAA------A--TTAT---A-TTAAATGG--CGT--CAT-AAATAACATT-TT--TAT-GA-----Cctcg
gi|12 : gagGGTTGTCCC-AGAAAA--ACGCGAATATTAT-----TA---TTTGGT--ACACAA-CAAAATGATCA---T-TTTCTGAATAT-C-GCTGTGAA-ATT-TTAATGCAT
gi|13 : gacgttaactgacaccatgaagttacgttttgacgtcgtcagtgttgcgccggcacctactatgtaagactggttaaagtgtgataaaatgttatttacagactaaGGTTGTCCC-AGAAAA--ACGCGAACTTGTTAG--ATA---TTTCGT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCC----T-ATTGTTAATGGATG-----ATA-AATCATAA-TTTTC-A-CAAA--AAAATA--T-TAAAGCTTTGGTC--ACAAACAAA-T-A---------C-----------------AAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGC
gi|18 : cgagGGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATA---TTTC
gi|16 : atacgagGGTTGTCCCCAGAAAG--ACGCGAACTTTTTAG--ATA---GTT
gi|19 : atacgagGGTTGTCCC-AGAAAA--ACGCGAACTttgctgtcatctcacataaattt
gi|20 : atacgagGGTTGTCCC-AGAAAA--ACGCG
gi|4 : ggtatacgagTTGTCCC-AGAAAA---CGCGAACTTTTTAG--ATA---TTTCATT-AAACTA-C---GTCACCAAACT-TTTCAAAATTT---GCC----TTGTTGTTAATGAATG-----AT-TAATCGTA--TTTTG-T-CAAA--AAA-TC--T-TAAGGTTTTGGTG--ACAAACAAAAT-A---------TGAA---A--CGGAATTTAAAAG-GTGC-AAA------TATC-AGT--AATATG--GCGCACC--G-ATT-----T-----T--T--GCACGTTC-TAAAATGGC-ACTTCGGTTAA--AGT-TGTGCTC-TA--TATTT-TA-TTT---TA-CAAACGTTATATTT--T-AAATATAAT---T-AT------ATGAA-AAAAGCGT--TAT---GTTCT-AACCAA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT---AT-AAATAACA-T-TT--TAT-GA-----CGTTATACGTA---CG-AACA-CTTTTGTTAGAA----ATT--TTCAAAAAA----TGG-C-AG--CG--TCGGA--TG-A--TAATG-----CGGCG-CACCGAATTGTAA-TCAATATTG---T---GTGGGC---AGGTTTGG-C-CCCCTATTCAAACTAAAA-TAAAGA-TGGAAACGA-TAGAA-CGACT--C-AA-A-CA---TGTTTCT-CGGA-CATT-GGTATACAGCA-TGA--CACAAAAAGT-TT-AAGGATGGTTGG-AGT--A------GTAATCC--TA---TGG-AAG---GGG---------G-GCG-G--TGG--AC-T------------------G-ACGAAAAA---------CTT----------------------------AAAAATCA----GGTG-ATGGAC---G-----TCA-TAC-T--GGA-CTTTGCAT----TTC-TTCC-TGCATT-----AAAAAATC--ATTTGTGAG---G-AAAGAGAT-T-T--CA---CGT-GACTGA-AATTGCG-CCGC----GAAGT---AT-CAGCCAA--TTTACCACA---TCTCTTAGTTCAGAAA---TG--TTTT---T-AATGC-AT-G-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTCAC-ACAT--AGTGGACGGCATTTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACATTCAC-GA-AGTT-AC-TTTTA-ACATC--GTCAGCG-TTGCGCCGG-AG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGAT-AAAATGTT--ATTTA-CAGACAAAATGCA--TA-AATAT-TT-CACAG-CGA-TAT--TCAG---AAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CTCAGAA-GTTT-AACAAAAAT-TATTT-G-AATG---------TTCGCGT--TTTTCT-GGGACAACCCT-
gi|1 : gggtGTCCC-AGAAAAAAACGCGAACTTTTTAG--ATA----TTCAT--AAACTAGC---GTCACCAAACT-TTACTAAATTTGT-GCCT---A-ATTGTTAGTGGATG-----GTATAATCGTAATTTTTT-A-CAAA--AAA-TAATT-CAAGTTTTTGGTTTGACAAACAAA-TAA---------TGAGAACAA-CGGCATTTAAAAG-TGGCAAAA-----ATATC-AGT--AAT-CGAAGCGCACCGGA-TTT-----T-----TTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGATCAATCTTTGCTG-CTAATATTTATA-TTAAGTTATCAAACATTATATTTAATAAAATATAATTTGT-AT------AACAATAAAAGTGTGGTAT---GGTCT-AA-C-A-ACA------TATCAA-TATTTAAA------ATTTTAT---ATTAAAATGAC-CGT--CAT-AAATAACATT-TTTCTATGGA-----CGTTATTATTA---CATAAC-TCTTCTTTAGGAA----ATT--CTC-AAAAAATCCCGG-C-AA--CGTATCAGAC-TG-A---GATG-----CGGCGCCACCGAATTGTAATTCAATACTG---TTTGG-AAG-ACGAGGTTAGG-C-CCCA-ATTCAAACAAAAA-GAAAGATTGTAAACGATTAGAA-CGTCA--CAAA-A-CA----GTGTCT-CGGATCATTGGGTATACA-CATTGACCCATAAAGGGTGTT-AAGGATGATTGGTAAT--G------GTAATTCTTTA---TGT-AAGCATG-G---------CGGTGTG--TAG--ACTTGACAA-A----AAATAGAG-ACGAAAAA---------ATT----------------------------AAAAATAG----GGTG-ATGTAC---GTTCGATTA-T-C-TAAAGA-TTTTGCAT----TCG-TTTC-TGCATT------AAAAATCATATCTGTGAG---GTAAAGGGAG-T-T--TA---CGT-TACTGA-AATT-CGTCCGC----GAAGT---AT-CA--CAACCTTTCCGACATCTTCTTTTAGTTCAGAAA---CG--TTGT---T-TATGCTATGG-GATGA--AACACTG-AGTAGTGAAGAAATGTTTTTCTACATGAGTGGGAC--TATTTTG-AGAAAAAAACAATGGAATATGACGTTTAAACAGACA-TCAC-GATAGTTACGGTTTGG-ACGTCGTGTCAGCGTTTGCTCCGGCAGCCTATTATTGTTAAGAGCTGCGTTAAAG-TGTGATAAAAATGCTTGATTTAGCAGCCAAAATGCAATTT-AAAAT-TT-CACAGCCGAGTATTCTCAGGAAAAA-TG-ATCATTTT-TTGT-GTAACCAAAGATAGATAA--AGAGATATTAGCT-AGAA-GTTT-CACAAAAAAGTATAT-AGAATG---------TTCGGCT--TTTTCT-GGGACAACCCTACGTA
gi|5 : gAAAA--GCGCAAACTTTTCGATCATA---TTTCATTCACACTA-C---GTCACCAAACTCTTACCAAATTT-TTGCC-------TCGTTGTTCGATACATCAGTATAATC-TAA-TTTTTTA-CAAATAAAA-TC--TCTAAGGTTTTGGTC--ACAAGCACA-T-ACAAATTTACTGAA---GAGCGGCATTTTAAGGTGTGC-AAATTTCAATATCCAGTTTAAT--G--GCGCACC--G-ATT-----T-----TTTTT-GCACGTTCAGAAAAGGGCCACTTCGGTTAA--AAT-GCTGCTCTTT--TATTT-TACTTT---TA-CAAACATTATA-TT--T-AAATAGAAT---TCAT------ATCAATAAAAGCAG--TATTTAGGTCTAAA-CAACACACCATCCCGTCAGCTA--TAGACAATTTA--TTATAGGA-TATAATTAATCGCTGCATAAAATACCATT-GT--TTT-GATGCACCGTTATACGTACCCCC-AACACTCTCCGTCTCAAATTTATGATTTA-AAAAA----CGGAC-AACGCG--CGGGAAGTGTACTCAAGGTCGACTGGCG-CACCGAATTGTAATTCAATACTGTGTT---G-AGGTCGGATGTTTGGTC-TCCT-ATTCAAAAT-AAA-GAAAGA-TGG-AACAA-TAGAA-CGACAACC-AATA-CATTGTGTGTCTGCGGA-CATT--GTATACACCA-TGA--CACAAAAATT-TA-AAGTATGTTTGG-GGTTAGTAATGTGTAATTC--TAATGTGATAAG-A-GCGCTAGAAAACC-GTG-GTTTAGGCAC-TGACAA-ACAAGA---AGAG-ACGAAAGAAGCTTAACGAATACGTCTTGGGAAAAACTCTATATATGGAAAAAGTTGTTGTGGT---TGGACCGTG-----TCA-TGTAT--AGAGCTTGGCAA----TTC-TT---TGCATTGAAGGAAAAAATCA-G--TGTGAGGAAG-AAGGAGGT-TGTA-TA---CGT-GACTGC-AATT-TG-GTGCGGCGGAAGTG--ATACA--CAA--tt
gi|6 : taTTAG--ATA---TTTCAT--AACTTA-C---GTCACCAA-CT-TTACTAG-TTT-T-GCC----T-GTTGTTAATGAATG-----ACATAATCGTAT-TTTAC-A-TAA---AAA-TC--T-TCAG-TTTTGGTC--ACAAACAAA-T-A---------TGAA---A--CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GC-CGAC--A-ATT-----G-----TTG---GCACGTTC-GAAAAGGGC-ACTTTGGTTAA--AAT-TGTGCTC-TA--TATTT-TA-TTT---TA-CAAACATTATATTT--T-AA-TATA-T---T-AT------ATTA-TAAAAGCGT--T-T---GGT-T-AA-CAA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT--CATAAAATAAT-TT-TT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCTGTTTAGA----ATT--TTC-AAAAA----T-G-C-AA--CG--TTGGA--TG-A--TAATG-----CGGAG---CCGAATT-TAATTCAATACTG---T---G-TGGAGCGAGGTTTGG---CCCA-ATTCCAACTAAA---AAAAA-TGGAAACAAGTAGAA-CGACA--C-AA-A-CAT--TGTGTCT-CGGA--ATA-TGTATACA-C--TGA--CACAAAAAGT-TTAAAGGATGGTTGG-AGT--G------GTAATCCT-TA---TGG-AAG-AGGTG---------C-GTG-G--TAG--AC-TGACAACA----A---AGAG-ACGAAAAA---------GTT----------------------------AAATATCA----GGTG-ATGGAC---G-----TCATTAC-T--GGA-TTT-GCAT----TCTGTTCC-TGCATCAA---AAAAAATC--ATTTGTGAG---GAAAAGAGGT-T-T--TA---CGT-GA-TGA-AAAT-CG-CAGC----GAAGT---AT-CA--CAA--TTT---AC--------------CAGAAATGTCG--TTTTAACC-AATGC-ATGGAG-TGA--AGC---ATA-TG-TG-AGAAATGGTT
gi|15 : ATAGTAC-TTTTG-A-CATA--ACA-TC--T-TAAAATTTTGGTC--ACAAACAAA-T-AATTA-----TGAA---AA-CGGCATCTAAAAG-GAGC-TAA-----ATATC-AGT--AAT-CG--
gi|8 : gGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-GGT--AAT-CG--GCGCAAC--G-ATT-----T-----TTT---GCACGTTC-GAAATGAGC-AGTTAGGTTGA--CAT-TTCGCTT-TA--TATTT-TA-TTT---TA-CAAACATTGTATTT--T-AAATATAAT---T-ACCGGTACATCAATAAAAGCGA--TAT---GGTCT-AA-CAA-ACA------TGTCAT-TA--TAAA------A--TTAT---A-TAAAATTA--CGT--TAT-AAATAACACT-TG--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTAGAA----ATT--TTC-AAAAA----TGA-C-AA--CG--TTGGA--TT-A--TAATG-----CGGCG-CACCGAATTGTAATTCAATACTG---T---G-TGGAGCGAGGTTTGG-C-CCCT-ATTCAAAGTAAAA-GGAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTTT-CGGA-CATT-TTTATACA-TA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATAC--TA---TGG-AAG-AGGTG---------C-GTG-T--TAT--AC-TGACAA-A----A---TGAG-ACGAAAAA---------taga
gi|3 : TTTAGAAC-GTGC-AAA-----A-----AAA--AAT-CG--GTGCGCC--A-ATTA----TTGATATTTT--GCACTTTT-AAActtaaa
gi|4 : gggtgtccagagaaaaacgcgaactttttagatatttcataaactacgtcaccaaactttcctaaattttgcctgttgttaatgaatgatataatcgtattttttaacaaagtcttaaggtttggtgacaaaaatatgaaaacggcaTTTAGAAC-GTGC-AAA----------------AAT-CG--GTGCGCC--ATATTACTGAT-----ATTT--GCACCTTT-TAA-------ATTCCGTTTCA--TAT-TTTGTTagggcacttcggttaaagttgtgctctatattttattttacaaacgttatattttaaataattattcaataaaaccgttatggtctaacaaacatctcagtataaaattatataaaataacgtcataaataacatttttatgacgttatacgtacagacaccttctgttagaaattttcaaaactggcaaacgtcggatgataagcggcgcaccgaattgtaattcaatactgtgtggagcgagttttggctccctattcaaactaaaataaagatggaacgatagaagcgactcaaacattgtctcggacattggtatacatgaacaaaaagtttaaggatggttggagtagtatcctatggaaggggtgcgtggtagactgacaaaaagagaacgaaaaacttaaaaatcaggtgatggacgtcatactggactttgcattctttcctgcattaaaaaatcattgtgaggaaagagatttcatgtgactgaaattcgccgcgaagtatcacaatttaccacatctcttagttcagaaatgtttttaatgcatgggtgaagcgatatgagaaatgtttgtcacatagtggacggtatttgagaaggaataaatatgacgttaacagacatcacgaagttacgattgacgtcgtcagcgttgcgccggcagctatttgtatgactggttaaagtgtgataaaaatgttattacagacaagatatataaatattcacagcgatattcagaaaatgaatcatttttgtgtggtaccaaataataatgatatactagaagtttaaaaaaaatatatgaaatgttccgttttttcgcgtttttctgggacaaccctcgtat
gi|17 : gggtttgtcccagaaaacgcgaactttttagatatttcattaaactacgtcaccaaacttttcaaaatttgccttgttgttaatgaatgattaatcgtattttgtcaaaaaatcttaaggttttggtgacaTTG--GCACGTTC-GAAAAGGGC-ACTTTGGTTAA--AAT-TGTGCTC-TA--TATTT-TA-TTT---TA-atggcacttcggttaaagttgtgctctatattttattttacaaacgttatattttaaatataattatatgaaaaaagcgttatgttctaaccaaacatgtcagtataaaattatataaaataacgtataaataacattttatgacgttatacgtacgaacacttttgttagaaattttcaaaaaatggcagcgtcggatgataatgcggcgcaccgaattgtaatcaatattgtgtgggcaggtttggccccctattcaaactaaaataaagatggaaacgatagaacgactcaaacatgtttctcggacattggtatacagcatgacacaaaaagtttaaggatggttggagtagtaatcctatggaaggggggcggtggactgacgaaaaacttaaaaatcaggtgatggacgtcatactggactttgcatttcttcctgcattaaaaaatcatttgtgaggaaagagatttcacgtgactgaaattgcgccgcgaagtatcagccaatttaccacatctcttagttcagaaatgtttttaatgcatggtgaagcgatatgagaaatgtttcacacatagtggacggcattttgagaaggaataaatatgacgttaacagacattcacgaagttacttttaacatcgtcagcgttgcgccggagctattatgtaagactggttaaagtgtgataaaatgttatttacagacaaaatgcataaatatttcacagcgatattcagaaatgatcattttgttgtgtaccaaataataatgatatactcagaagtttaacaaaaattatttgaatgttcgcgtttttctgggacaaccctc
gi|14 : TT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--CAT-TTCGCTC-TA--TATAT-TA-TTT---TA-CAAACATTGTATTT--C-AAATATAAT---T-AT------ATCAATAAAAGCGG--TAT---G
gi|3 : ATAA--CGT--CAT-AAA-AATGTTATT--TAT-GA-----CGTTAT
gi|6 : gggtgtccagagaaaaacgcgaactttttagatatttcataaactacgtcaccaaactttcctaaattttgcctgttgttaatgaatgatataatcgtattttttaacaaagtcttaaggtttggtgacaaaaatatgaaaacggcatttaaaagtgcaaaatatcaataattggcgcaccgatttttttttgcacgttctaaaagggcacttcggttaaagttgtgctctatattttattttacaaacgttatattttaaataattattcaataaaaccgttatggtctaacaaacatctcagtataaaattatataaaATAA--CGT--CAT-AAAAAATTAT-TT--TAT-GA-----CGTTATacgtacagacaccttctgttagaaattttcaaaactggcaaacgtcggatgataagcggcgcaccgaattgtaattcaatactgtgtggagcgagttttggctccctattcaaactaaaataaagatggaacgatagaagcgactcaaacattgtctcggacattggtatacatgaacaaaaagtttaaggatggttggagtagtatcctatggaaggggtgcgtggtagactgacaaaaagagaacgaaaaacttaaaaatcaggtgatggacgtcatactggactttgcattctttcctgcattaaaaaatcattgtgaggaaagagatttcatgtgactgaaattcgccgcgaagtatcacaatttaccacatctcttagttcagaaatgtttttaatgcatgggtgaagcgatatgagaaatgtttgtcacatagtggacggtatttgagaaggaataaatatgacgttaacagacatcacgaagttacgattgacgtcgtcagcgttgcgccggcagctatttgtatgactggttaaagtgtgataaaaatgttattacagacaagatatataaatattcacagcgatattcagaaaatgaatcatttttgtgtggtaccaaataataatgatatactagaagtttaaaaaaaatatatgaaatgttccgttttttcgcgtttttctgggacaaccctcgtat
gi|7 : ttagatatttcataacttacgtcaccaactttactagttttgcctgttgttaatgaatgacataatcgtattttacataaaaatcttcagttttggtcacaaacaaatatgaaacggcatttaaaaggtgcaaaatatcagtaatcggccgacaattgttggcacgttcgaaaagggcactttggttaaaattgtgctctatattttattttacaaacattatattttaatatattatattataaaagcgtttggttaacaaacatgtcagtataaaattatataaaAAACTAAAAAGAGAGA-TTGAAACGA-TAGAA-CGACA--C-AA-AACA---TGTGTCT-CAGA-CATT-GG-GTA----A-TG---CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-AAGCG---------C-GTG-----AG--AC-C-ACAA-A----A---AGA------------------------------GG-------------ACGACAAA----------GTGTATGGAC---G-----TCA-TAC-acgtacaaacaccttctgtttagaattttcaaaaatgcaacgttggatgataatgcggagccgaatttaattcaatactgtgtggagcgaggtttggcccaattccaactaaaaaaaatggaaacaagtagaacgacacaaacattgtgtctcggaatatgtatacactgacacaaaaagtttaaaggatggttggagtggtaatccttatggaagaggtgcgtggtagactgacaacaaagagacgaaaaagttaaatatcaggtgatggacgtcattactggatttgcattctgttcctgcatcaaaaaaaatcatttgtgaggaaaagaggttttacgtgatgaaaatcgcagcgaagtatcacaatttaccagaaatgtcgttttaaccaatgcatggagtgaagcatatgtgagaaatggtt
gi|4 : A-TTTCTCATATCGCTT-CACCATGCATT-----AAAAA--C--ATTTCTGAA---C-TAAGAGAT-G-TGGTA---AATTGGCTGATACTT-CG-CGGC----GCAAT---TT-CAGTCAC--GTG---AAA---TCTCTTTCCTCACAAA---TGATTTTT---T-AATGC-Agtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggtcagaaatgttttaatgcatgggtgaagcgacatgagaaatgtttgtcacataacgacgggattttgcagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtacatcacgaaaactacgttttgcacgtcgtcggcgttgcgcgacagcaatttgcaagactggttaaaggtctgaaataaatgttatttacagacaaaatgcattaaaattttcacagtgatattcagaaaaatgatcaatttgttgtgtaccaaataataatttgatatactagagcgtttacaaaaaaatatataaaaatgttcgcttttttt
gi|3 : gggtttgtcccagaaaacgcgaactttttagatatttcattaaactacgtcaccaaacttttcaaaatttgccttgttgttaatgaatgattaatcgtattttgtcaaaaaatcttaaggttttggtgacaaacaaaatatgaaacggaatttaaaaggtgcaaatatcagtaatatggcgcaccgatttttgcacgttctaaaatggcacttcggttaaagttgtgctctatattttattttacaaacgttatattttaaatataattatatgaaaaaagcgttatgttctaaccaaacatgtcagtataaaattatataaaataacgtataaataacattttatgacgttatacgtacgaacacttttgttagaaattttcaaaaaatggcagcgtcggatgataatgcggcgcaccgaattgtaatcaatattgtgtgggcaggtttggccccctattcaaactaaaataaagatggaaacgatagaacgactcaaacatgtttctcggacattggtatacagcatgacacaaaaagtttaaggatggttggagtagtaatcctatggaaggggggcggtggactgacgaaaaacttaaaaatcaggtgatggacgtcatactggactttgcatttcttcc-TGCATT-----AAAAA--C--ATTTCTGAA---C-TAAGAGAT-G-TGGTAAATTGT-GAT----ACTT-CG-CGGC----GAATTTCAGT-CA--CA----TG---AAA---TCTCTTTCCTCACAAT---GA--TTTT---TTAATGC-Agtttcacacatagtggacggcattttgagaaggaataaatatgacgttaacagacattcacgaagttacttttaacatcgtcagcgttgcgccggagctattatgtaagactggttaaagtgtgataaaatgttatttacagacaaaatgcataaatatttcacagcgatattcagaaatgatcattttgttgtgtaccaaataataatgatatactcagaagtttaacaaaaattatttgaatgttcgcgtttttctgggacaaccctc
gi|9 : gggtgtccagagaaaaacgcgaactttttagatatttcataaactacgtcaccaaactttcctaaattttgcctgttgttaatgaatgatataatcgtattttttaacaaagtcttaaggtttggtgacaaaaatatgaaaacggcatttaaaagtgcaaaatatcaataattggcgcaccgatttttttttgcacgttctaaaagggcacttcggttaaagttgtgctctatattttattttacaaacgttatattttaaataattattcaataaaaccgttatggtctaacaaacatctcagtataaaattatataaaataacgtcataaataacatttttatgacgttatacgtacagacaccttctgttagaaattttcaaaactggcaaacgtcggatgataagcggcgcaccgaattgtaattcaatactgtgtggagcgagttttggctccctattcaaactaaaataaagatggaacgatagaagcgactcaaacattgtctcggacattggtatacatgaacaaaaagtttaaggatggttggagtagtatcctatggaaggggtgcgtggtagactgacaaaaagagaacgaaaaacttaaaaatcaggtgatggacgtcatactggactttgcattctttcc-TGCATT-----AAAAA--C--ATTTCTGAG---C-AAAGAGATGT-G--TAAATTGT-GAT----ACTT-CG-CGGC----AAAtgggtgaagcgatatgagaaatgtttgtcacatagtggacggtatttgagaaggaataaatatgacgttaacagacatcacgaagttacgattgacgtcgtcagcgttgcgccggcagctatttgtatgactggttaaagtgtgataaaaatgttattacagacaagatatataaatattcacagcgatattcagaaaatgaatcatttttgtgtggtaccaaataataatgatatactagaagtttaaaaaaaatatatgaaatgttccgttttttcgcgtttttctgggacaaccctcgtat
gi|9 : tgactgaaaT-GACTGA-AATT-TG-CCGC----GAAGT---AT-CA--CAA--TTT---ACACA-TCTCTTTGCTCAGAAA---TG--TTTT---T-AATGC-ATGG-G-TGATGAGC---G-A-TA-TG-AGAAATGTTTGTC-ACAT--AGTGGACGGTATTTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACA-TCAT-GA-AATT-ACGTTTTG-ACGTC--GTCAGAG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACTAAATGCA--TTAAAAAT-TT-CACAG-GGA-T-T--TCAA--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTT-AACAAAAAA-TATAT-GAAATG---------TTCGCGT--TTTTCT-GGGACAACCCT-CGtgggtgatgagcgatatgagaaatgtttgtcacatagtggacggtattttgagaaggaataaatatgacgttaacagacatcatgaaattacgttttgacgtcgtcagagttgcgccggcagctattatgtaagactggttaaagtgtgataaaaatgttatttacagactaaatgcattaaaaatttcacagggatttcaaaaaatgatcattttgttgtgtaccaaataataatgatatactagaagtttaacaaaaaatatatgaaatgttcgcgtttttctgggacaaccctcg
gi|7 : TCAGAAA---TG--TTTT-----AATGC-ATGG-G-TGA--AGC---G-A-CA-TG-AGAAATGTTTGTC-ACAT--AAC-GACGGGATTTTGCAGAAGG----AAT-GAATA
gi|11 : aaactaaaaagagagattgaaacgatagaacgacacaaaacatgtgtctcagacattgggtaatgcacaaaaggtttaaggatggttggagtggtaatcctatggaagaagcgcgtgagaccacaaaaagaggacgacaaagtgtatggacgtcatacgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggACGGGATTTTG-AGAAGG----AAT-GAATAatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtacatcacgaaaactacgttttgcacgtcgtcggcgttgcgcgacagcaatttgcaagactggttaaaggtctgaaataaatgttatttacagacaaaatgcattaaaattttcacagtgatattcagaaaaatgatcaatttgttgtgtaccaaataataatttgatatactagagcgtttacaaaaaaatatataaaaatgttcgcttttttt
gi|12 : GACGTT--AACTGACA-CCAT-GA-AGTT-ACGTTTTG-ACGTC--GTCAGTG-TTGCGCCGGCAC-CTACTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAA-TGTT--ATTTA-CAGACTAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--Tatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaatgtacatcacgaactacgttttgacgtcgtcggcgttgcgccgacagcaattatgcaagactggttaaagtctgataaaaatgttatttacagacaaaatgcattaaaatttcacagtgatattcagaaaatgatcaatttgttgtgtaccaaataataatgatatactagaggtttaacaaaaaatatataaaatgttcgcttttt
gi|11 : ACA-TCAC-GA-A-CT-ACGTTTTG-ACGTC--GTCGGCG-TTGCGCCGACAG-CAATTA-TG-CAAGA-CTG-GTTAAAG-TCTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-TGA-TAT--TCAG--AAAA-TG-ATCAATTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAG-GTTT-AACAAAAAA-TATAT-AAAATG---------TTCGCTT--TTTattcgcgtttttctgggacaacc
gi|7 : acgggattttgagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaatgtACA-TCACGAA-AACT-ACGTTTTGCACGTC--GTCGGCG-TTGCGC-GACAG-CAATT--TG-CAAGA-CTG-GTTAAAGGTCTGAAATAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TTTCACAG-TGA-TAT--TCAG--AAAAATG-ATCAATTTGTTGT-GT-ACCAA--ATA-ATAATTTGATATA----CT-AGAGCGTTTACA-AAAAAA-TATATAAAAATG---------TTCGCTT--TTTT
gi|13 : aaactaaaaagagagattgaaacgatagaacgacacaaaacatgtgtctcagacattgggtaatgcacaaaaggtttaaggatggttggagtggtaatcctatggaagaagcgcgtgagaccacaaaaagaggacgacaaagtgtatggacgtcatacgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggtcagaaatgttttaatgcatgggtgaagcgacatgagaaatgtttgtcacataacgacgggattttgcagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtA-GTTT--ACGAAA---TATCT-AACAAG---------TTCGCGT--TTTTCT-GGGACAACCCT-CGt
gi|16 : AAAAC-TATCT-AAAAAG---------TTCGCGT--CTTTCTGGGGACAACCCT-CGTAacgtcaccaaactttactaaattttgcctattgttaatggatgataaatcataattttcacaaaaaaatattaaagctttggtcacaaacaaatacaaaaggtgcaaaatatcagtaatcggcgc
gi|3 : aAAA-TATCT-AAAAAG---------TTCGCGT--TTTTCTCTGGACACCCgctgtcatctcacataaattt
gi|4 : AAA-TATCT-AAAAAG---------TTCGCG---TTTTCT-GGGACAAACCcataaactacgtcaccaaactttcctaaattttgcctgttgttaatgaatgatataatcgtattttttaacaaagtcttaaggtttggtgacaaaaatatgaaaacggcatttaaaagtgcaaaatatcaataattggcgcaccgatttttttttgcacgttctaaaagggcacttcggttaaagttgtgctctatattttattttacaaacgttatattttaaataattattcaataaaaccgttatggtctaacaaacatctcagtataaaattatataaaataacgtcataaataacatttttatgacgttatacgtacagacaccttctgttagaaattttcaaaactggcaaacgtcggatgataagcggcgcaccgaattgtaattcaatactgtgtggagcgagttttggctccctattcaaactaaaataaagatggaacgatagaagcgactcaaacattgtctcggacattggtatacatgaacaaaaagtttaaggatggttggagtagtatcctatggaaggggtgcgtggtagactgacaaaaagagaacgaaaaacttaaaaatcaggtgatggacgtcatactggactttgcattctttcctgcattaaaaaatcattgtgaggaaagagatttcatgtgactgaaattcgccgcgaagtatcacaatttaccacatctcttagttcagaaatgtttttaatgcatgggtgaagcgatatgagaaatgtttgtcacatagtggacggtatttgagaaggaataaatatgacgttaacagacatcacgaagttacgattgacgtcgtcagcgttgcgccggcagctatttgtatgactggttaaagtgtgataaaaatgttattacagacaagatatataaatattcacagcgatattcagaaaatgaatcatttttgtgtggtaccaaataataatgatatactagaagtttaaaaaaaatatatgaaatgttccgttttttcgcgtttttctgggacaaccctcgtat
gi|10 : gAAA-TATCT-AAAAAG---------TTCGCGT--TTTTCT-GGGACAACCCT-cattaaactacgtcaccaaacttttcaaaatttgccttgttgttaatgaatgattaatcgtattttgtcaaaaaatcttaaggttttggtgacaaacaaaatatgaaacggaatttaaaaggtgcaaatatcagtaatatggcgcaccgatttttgcacgttctaaaatggcacttcggttaaagttgtgctctatattttattttacaaacgttatattttaaatataattatatgaaaaaagcgttatgttctaaccaaacatgtcagtataaaattatataaaataacgtataaataacattttatgacgttatacgtacgaacacttttgttagaaattttcaaaaaatggcagcgtcggatgataatgcggcgcaccgaattgtaatcaatattgtgtgggcaggtttggccccctattcaaactaaaataaagatggaaacgatagaacgactcaaacatgtttctcggacattggtatacagcatgacacaaaaagtttaaggatggttggagtagtaatcctatggaaggggggcggtggactgacgaaaaacttaaaaatcaggtgatggacgtcatactggactttgcatttcttcctgcattaaaaaatcatttgtgaggaaagagatttcacgtgactgaaattgcgccgcgaagtatcagccaatttaccacatctcttagttcagaaatgtttttaatgcatggtgaagcgatatgagaaatgtttcacacatagtggacggcattttgagaaggaataaatatgacgttaacagacattcacgaagttacttttaacatcgtcagcgttgcgccggagctattatgtaagactggttaaagtgtgataaaatgttatttacagacaaaatgcataaatatttcacagcgatattcagaaatgatcattttgttgtgtaccaaataataatgatatactcagaagtttaacaaaaattatttgaatgttcgcgtttttctgggacaaccctc
gi|12 : AAA-TA-AT---AATA---------TTCGCGT--TTTTCT-GGGACAACCcataaactacgtcaccaaactttactaaattttgcctattgttagtggatggtataatcgtaattttcaccaaaaatatcaaggttttggttacaaacaaatatgaaaacggcatttaaaaggtgcaaaatatcagtaatcggcgcaccgatttttttgcacgttcgaaaagagcacttcggttgaaattttgctctatattttattgtacaaacattatattttaaatataattatatcaataaaagtgttatggtctaacaaacatgtaaatataaaattatattaaatggcgtcataaataacatttttatgac
gi|18 : gacgttaactgacaccatgaagttacgttttgacgtcgtcagtgttgcgccggcacctactatgtaagactggttaaagtgtgataaaatgttatttacagactaaatgcattaaaatttcacagcgatattcagaaaatgatcattttgttgtgtaccAAA-TATCT-AAAAAG---------TTCGCGT--TTTTCT-GGGACAACCCT-CGTA
gi|1 : aAA-TATCT-AAAAAG---------TTCGCGTTTTTTTCT-GGGACc
gi|19 : gG---------TTCGCGT--TTTTCT-GGGACAACCCT-CGTAcataaactagcgtcaccaaactttactaaatttgtgcctaattgttagtggatggtataatcgtaattttttacaaaaaataattcaagtttttggtttgacaaacaaataatgagaacaacggcatttaaaagtggcaaaaatatcagtaatcgaagcgcaccggattttttttgcacgttcgaaaagagcacttcggttgatcaatctttgctgctaatatttatattaagttatcaaacattatatttaataaaatataatttgtataacaataaaagtgtggtatggtctaacaacatatcaatatttaaaattttatattaaaatgaccgtcataaataacatttttctatggacgttattattacataactcttctttaggaaattctcaaaaaatcccggcaacgtatcagactgagatgcggcgccaccgaattgtaattcaatactgtttggaagacgaggttaggccccaattcaaacaaaaagaaagattgtaaacgattagaacgtcacaaaacagtgtctcggatcattgggtatacacattgacccataaagggtgttaaggatgattggtaatggtaattctttatgtaagcatggcggtgtgtagacttgacaaaaaatagagacgaaaaaattaaaaatagggtgatgtacgttcgattatctaaagattttgcattcgtttctgcattaaaaatcatatctgtgaggtaaagggagtttacgttactgaaattcgtccgcgaagtatcacaacctttccgacatcttcttttagttcagaaacgttgtttatgctatgggatgaaacactgagtagtgaagaaatgtttttctacatgagtgggactattttgagaaaaaaacaatggaatatgacgtttaaacagacatcacgatagttacggtttggacgtcgtgtcagcgtttgctccggcagcctattattgttaagagctgcgttaaagtgtgataaaaatgcttgatttagcagccaaaatgcaatttaaaatttcacagccgagtattctcaggaaaaatgatcattttttgtgtaaccaaagatagataaagagatattagctagaagtttcacaaaaaagtatatagaatgttcggctttttctgggacaaccctacgtatt
gi|20 : aCGCGT--TTTTCT-GGGACAACCCT-CGTAt
Alignments
lowQualScore : 11 1 11 222222222 11111 111 111111 111111 111111 11111 11111 111 111111 11111 33333333333333 111111 1 11111 1 111111111 222222222 1111 11111111 111111111 111 11 11 22222 1 111 1111 44444 111 111 1111 111 1111 1111 111111111
lowQualScore : 5 66 66 00 4 777 4 777 3 9999 4 0 4 11 77 4 66 4 666 4 1 66 4 4 777777777 999999 4 4 00000 4 55 4 55 4 66 555 4 4 55 4 1 4 4 4 4 4 777 4 66 4 777 4 222222 66 777 5 5 5 444444 5 66 444444 66 5 77777 66 5 5 66 5 22222 000 5 4 11 666666 99999 5 5 77 5 5 5 33333333333333 5 1 111111 5 5 5 66 5 5 3 0 5 66 5 5 5 00000 5 5 77 0 5 66 5 5 5 555555555 66 5 888 5 5 66 1 000000000 3333 66 5 5 33333333 5 5 66 1 777777777 1 999 4 000 5 33 5 5 99 00 6 6 1 55555 99 3 3 111 6 6 5 5 2222 5 5 77 77 00000 111 3 4 000 0000 5 5 5 77 000 5 5 5 5 2 6 6 6 5 2222 5 99 5 5 55 5 5 66 2 5 5 88 5 5 5 5 66 5 66 55 5 5 5 5 66 66 5 5 5 5 66 5 66 2222 5 5 66 4 8 55 1 444444444 4 4
lowQualScore : . .. .. .. . ... . ... . .... . . . .. .. . .. . ... . . .. . . ......... ...... . . ..... . .. . .. . .. ... . . .. . . . . . . . ... . .. . ... . ...... .. ... . . . ...... . .. ...... .. . ..... .. . . .. . ..... ... . . .. ...... ..... . . .. . . . .............. . . ...... . . . .. . . . . . .. . . . ..... . . .. . . .. . . . ......... .. . ... . . .. . ......... .... .. . . ........ . . .. . ......... . ... . ... . .. . . .. .. . . . ..... .. . . ... . . . . .... . . .. .. ..... ... . . ... .... . . . .. ... . . . . . . . . . .... . .. . . .. . . .. . . . .. . . . . .. . .. .. . . . . .. .. . . . . .. . .. .... . . .. . . .. . ......... . .
lowQualScore : 7 99 11 66 4 888 4 000 3 4444 4 9 4 99 11 4 11 4 222 4 9 11 4 4 222222222 111111 0 0 00000 0 55 0 55 0 99 111 0 0 55 0 0 0 0 0 0 0 000 0 11 4 888 4 888888 11 888 0 0 0 444444 0 99 444444 99 0 55555 99 0 0 99 0 55555 000 7 0 66 444444 33333 7 7 99 7 7 0 66666666666666 7 0 777777 7 7 7 77 0 0 2 0 0 99 0 0 0 99999 0 0 55 0 0 99 0 0 0 222222222 99 0 888 0 0 44 1 000000000 2222 99 0 0 44444444 0 0 11 0 888888888 6 111 3 000 7 66 7 7 22 33 7 7 0 88888 22 2 3 777 7 7 7 7 1111 7 7 99 99 88888 777 3 8 000 1111 7 7 7 99 000 7 7 7 7 5 7 7 7 7 1111 7 22 0 0 22 0 0 99 0 0 0 22 0 0 0 0 99 0 99 44 0 0 0 0 99 99 0 0 0 0 99 0 99 1111 7 7 99 4 4 99 0 555555555 0 4
consensus : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-GT----TGTT-AATGGAT-GGTATAATCGTAA-TTTTC-ACA-AA--AAA-T--CT-TAAGGTTTTGGTC--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--TTTTTTT--GCACGTTC-GAAAAGGGC-ACTTCGGTTGA--AAT-TNTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTATA-TAAAATGA-----CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTAGAAAT------TTTCAAAAA----CGG-C-AACG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CCCN-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---T-GTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TTAA-GGATGGTTGG-AGT--G------GTAATCC--T-A---TGG-AAG-A-GGCG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAANTT---------AAAAATCG-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTA-C--ACA---TCTCTTAGTTCAGAAA---CGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTNTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-GAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-AAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
Reference ( family-5171 ) : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-GT----TGTT-AATGGAT-GGTATAATCGTAA-TTTTC-ACA-AA--AAA-T--CT-TAAGGTTTTGGTC--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCGCCGA--TTTTTTT--GCACGTTC-GAAAAGGGC-ACTTCGGTTGA--AAT-TNTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTATA-TAAAATAA-----CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTNGAAAT------TTTCAAAAA----CGG-C-AACG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGNGGA--G--C-GAGGTTTGG-C-CCCN-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---T-GTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TTAA-GGATGGTTGG-AGT--G------GTAATCC--T-A---TGG-AAG-A-GGCG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAANTT---------AAAAATCG-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTT--C--ACA---TCTCTTNGCTCAGAAA---CGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTGTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-GAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-GTTTTG-ACGTC--GTCGGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATCT-AAAANG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
gi|1 : GTCCC-AGAAAAAAACGCGAACTTTTTAG--ATA-TTCAT--AAACTAGC---GTCACCAAACT-TTACTAAATTTGT-GCCTAAT----TGTT-AGTGGAT-GGTATAATCGTAATTTTTT-ACA-AA--AAA-TAATT-CAAGTTTTTGGTTTGACAAACAAA-TAA---------TGAGAACAA-CGGCATTTAAAAG-TGGCAAAA-----ATATC-AGT--AAT-CGAAGCGCACCGGATTTTTTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGATCAATCTTTGCTGCTAAT-ATTTATA-TTAAGTTATCAAACATTATATTTAATAAAATATAATTTGT-AT------AACAATAAAAGTGTGGTAT---GGTCT-AAC--A-ACA------TATCAA-TATTTAAA------ATTTTATATTAAAATGAC----CGT--CAT-AAA-TAACATTTTTCTATGGA-----CGTTATTATTA---CATAAC-TCTTCTTTAGGAAAT------TCTCAAAAAATCCCGG-C-AACGTAT-CAGACTGA-GATG--------------CGGCGCCACCGAATTGTAATTCAATACTGTTTGGAAGA--C-GAGGTTAGG-C-CCCA-ATTCAAACAAAAA-GAAAGATTGTAAACGATTAGAA-CGTCA--CAAA-A-CA-----GTGTCT-CGGATCATTGGGTATACA-CATTGACCCATAAAGGGTGTTAA-GGATGATTGGTAAT--G------GTAATTCTTT-A---TGT-AAGCATGGCG----------GTGTG--TAG--ACTTGACAA-A----AAATAGA-G-ACGAA--AAAATT---------AAAAATAG-GGTGATGTAC---GTTCGATTATC-TAAAGA-TTTTGCA-TTCG-TTTCTGCATT------AAAAATCATATCTGTGAGGTAAA---GGGAGT-T-TACGTTACTGAAATT-CGTCCGC----GAAGT-AT-CA--CAACCTTT--CCGACATCTTCTTTTAGTTCAGAAA---CGTTGT---TTATGCTATGG-GATGA--AACACTG-AGTAGTGAAGAAATGTTTTTCTACATGAGTGGGAC--TATTTTG-AGAAAAAAACAATGGAATATGACGTTTAAACAGACA-TCACGATAG-TTACGGTTTGG-ACGTCGTGTCAGCGTTTGCTCCGGCAGCCTATTATTGTTAAGAGCTGCGTTAAAG-TGTGATAAAAATGCTTGATTTAGCAGCCAAAATGCAATTT-AAAAT-TT-CACAGCCGAGTATTCTCAGGAAAAA-TG-ATCATTTT-TTGT-GTAACCAAAGATAGATAA--AGAGATATTAGCT-AGAA-GTTTCACA--AAAAAGTATAT-AGAATG---------TTCGGCTTTTTCT-GGGACAACCCTACGTA
gi|10 : gGGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-AT----TGTT-AGTGGAT-GGTATAATCGTAA-TTTTC-ACC-AA--AAA-T--AT-CAAGGTTTTGGTT--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--TTTTTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--AAT-TTTGCT-CT-AT-ATTT-TA-TT---GTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGTGT--TAT---GGTCT-AAC-AA-ACA------TGTAAA-TA--TAAA------A--TTATA-TTAAATGG-----CGT--CAT-AAA-TAACATTTT--TAT-GA-----Ctt
gi|11 : gagACGGGATTTTG-AGAAGG----AAT-GAATA
gi|11 : ACA-TCACGA-A--CTAC-GTTTTG-ACGTC--GTCGGCG-TTGCGCCGACAG-CAATTA-TG-CAAGA-CTG-GTTAAAG-TCTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-TGA-TAT--TCAG--AAAA-TG-ATCAATTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAG-GTTTAACA--AAAAA-TATAT-AAAATG---------TTCGCTTTTTatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaatgtacatcacgaactacgttttgacgtcgtcggcgttgcgccgacagcaattatgcaagactggttaaagtctgataaaaatgttatttacagacaaaatgcattaaaatttcacagtgatattcagaaaatgatcaatttgttgtgtaccaaataataatgatatactagaggtttaacaaaaaatatataaaatgttcgcttttt
gi|12 : acgggattttgagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaatgtGACGTT--AACTGACA-CCATGA-AG-TTAC-GTTTTG-ACGTC--GTCAGTG-TTGCGCCGGCAC-CTACTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAA-TGTT--ATTTA-CAGACTAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--T
gi|12 : GGTTGTCCC-AGAAAA--ACGCGAATATTAT-----TATTTGGT--ACACAA-CAAAATGATCA---T-TTTCTGAATAT-C-G-CT-GTGAAATTTT-AATGCAT-attcgcgtttttctgggacaacc
gi|12 : gacgttaactgacaccatgaagttacgttttgacgtcgtcagtgttgcgccggcacctactatgtaagactggttaaagtgtgataaaatgttatttacagactaa---------TTCGCGTTTTTCT-GGGACAACC
gi|13 : gacgttaactgacaccatgaagttacgttttgacgtcgtcagtgttgcgccggcacctactatgtaagactggttaaagtgtgataaaatgttatttacagactaaatgcattaaaatttcacagcgatattcagaaaatgatcattttgttgtgtaccaaataataataGGTTGTCCC-AGAAAA--ACGCGAACTTGTTAG--ATATTTCGT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-AT----TGTT-AATGGAT-GATA-AATCATAA-TTTTC-ACA-AA--AAAAT--AT-TAAAGCTTTGGTC--ACAAACAAA-T-A---------C-----------------AAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGC
gi|14 : cgagTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--CAT-TTCGCT-CT-AT-ATAT-TA-TT---TTA-CAAACATTGTATTT--C-AAATATAAT---T-AT------ATCAATAAAAGCGG--TAT---G
gi|15 : ATAGTAC-TTTTG-ACA-TA--ACA-T--CT-TAAAATTTTGGTC--ACAAACAAA-T-AATTA-----TGAA---AA-CGGCATCTAAAAG-GAGC-TAA-----ATATC-AGT--AAT-CG--
gi|16 : gTGACAGCAAAAC-TATCT-AAAAAG---------TTCGCGTCTTTCTGGGGACAACCCT-CGTAtaga
gi|17 : aTTG--GCACGTTC-GAAAAGGGC-ACTTTGGTTAA--AAT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-tctcacataaattt
gi|18 : AAA-TATCT-AAAAAG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
gi|19 : aG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTAc
gi|2 : aGGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---ATCACCAAACT-TTACTAAATTT-T-GCCA-AT----TGTT-AGTGGAT-GGTATAATCGTAA-TTTTC-ACA-AG--AAA-T--AT-TAAGATTTTGGTC--ATAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCAA--TTTTTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--AAT-TTTGCT-CT-TT-ATTT-TA-TT---GTA-CTGACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAA-TA--TAAA------A--TTATA-TAAAATGA-----CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTAAGAAAT------GTTCAAAAA----TGG-C-AACG--T-TGGA-TGATAATG--------------CGGTG-CACCGAATTGTAATTCAATACTGCGAGGC--A--C-GAGGATTGG-C-CCCA-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---T-GTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TTAA-GGATGGTTGG-AGT--G------GTAATCC--T-A---TGA-AAG-A-TGTG---------CGTG-A--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAAAATAGGGACGAAAAAAATAG-GGTGATGGAC---G-TCA--TA-C-T--AGA-TTTCGCA-TTTT-TTCCTGCATT-----AAAAAATC--GTTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTT-----ACA---TCTCTTAGTTTAGAAA---CATTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTTTC-ACAT-ATT-GGACGGTATTTTG-AGAAAG----AAT-GAATATGACGTT--AACAGACA-TCACAA-AG-CTCC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGCT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTCACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTAt
gi|20 : CGCGTTTTTCT-GGGACAACCCT-CGTA
gi|3 : ggtaGGGTGTCCAGAGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTCCTAAATTT-T-GCCT-GT----TGTT-AATGAAT-GATATAATCGTAT-TTTTT-A-A-CA--AAG-T--CT-TAAGGTTT-GGTG--ACAAA--AA-T-A---------TGAA---AA-CGGCATTTAAAAG--TGC-AAA-----ATATC-AAT--AAT-TG--GCGCACCGA--TTTTTTTTTGCACGTTC-TAAAAGGGC-ACTTCGGTTAA--AGT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACGTTATATTT--T-AAATA--AT---T-AT-------TCAATAAAACCGT--TAT---GGTCT-AAC-AA-ACA------TCTCAG-TA--TAAA------A--TTATA-TAAAATAA-----CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-GACACCTTCTGTTAGAAAT------TTTCAAAAC----TGG-CAAACG--T-CGGA-TGATAA-G--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGTTTTGG-CTCCCT-ATTCAAACTAAAA-TAAAGA-TGG-AACGA-TAGAAGCGACT--C-AA-A-CA---T--TGTCT-CGGA-CATT-GGTAT--A-CA-TGA---ACAAAAAGT-TTAA-GGATGGTTGG-AGT--A------GT-ATCC--T-A---TGG-AAG-G-GGTG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-GAACGAA--AAACTT---------AAAAATCA-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--A-TTGTGAGG-AAA---GAGATT-T-CATGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTACC--ACA---TCTCTTAGTTCAGAAA---TGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTGTC-ACAT-AGT-GGACGGTA-TTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-G-ATTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATT--TG-TATGA-CTG-GTTAAAG-TGTGATAAAAATGTT--A-TTA-CAGACAAGATATA--T---AAATATT-CACAG-CGA-TAT--TCAG--AAAA-TGAATCATTTTTGTGTGGT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAA-A--AAAAA-TATAT-GAAATGTTCCGTTTTTTCGCGTTTTTCT-GGGACAACCCT-CGTA
gi|4 : TTGTCCC-AGAAAA---CGCGAACTTTTTAG--ATATTTCATT-AAACTA-C---GTCACCAAACT-TTTCAAAATTT---GCCTTGT----TGTT-AATGAAT-GAT-TAATCGTA--TTTTG-TCA-AA--AAA-T--CT-TAAGGTTTTGGTG--ACAAACAAAAT-A---------TGAA---A--CGGAATTTAAAAG-GTGC-AAA------TATC-AGT--AATATG--GCGCACCGA--TTTTT----GCACGTTC-TAAAATGGC-ACTTCGGTTAA--AGT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACGTTATATTT--T-AAATATAAT---T-AT------ATGAA-AAAAGCGT--TAT---GTTCT-AACCAA-ACA------TGTCAG-TA--TAAA------A--TTATA-TAAAATAA-----CGT---AT-AAA-TAACATTTT---AT-GA-----CGTTATACGTA---CG-AACACTTTT-GTTAGAAAT------TTTCAAAAAA---TGG-C-AGCG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAAT-CAATATTGTGTGG---G--C--AGGTTTGG-C-CCCCTATTCAAACTAAAA-TAAAGA-TGGAAACGA-TAGAA-CGACT--C-AA-A-CA---T-GTTTCT-CGGA-CATT-GGTATACAGCA-TGA--CACAAAAAGT-TTAA-GGATGGTTGG-AGT--A------GTAATCC--T-A---TGG-AAG-G-GGGG---------CG---G--TGG--AC-TGAC--------------------GAA--AAACTT---------AAAAATCA-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTTC-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-CACGTGACTGAAATTGCG-CCGC----GAAGT-AT-CAGCCAA--TTTACC--ACA---TCTCTTAGTTCAGAAA---TGTTTT---TAATGC-AT-G-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTCAC-ACAT-AGT-GGACGGCATTTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACATTCACGA-AG-TTAC--TTTTA-ACATC--GTCAGCG-TTGCGCCGG-AG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGAT-AAAATGTT--ATTTA-CAGACAAAATGCA--TA-AATAT-TT-CACAG-CGA-TAT--TCAG---AAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CTCAGAA-GTTTAACA--AAAAT-TATTT--GAATG---------TTCGCGTTTTTCT-GGGACAACCCT-t
gi|5 : gggtAAAA--GCGCAAACTTTTCGATCATATTTCATTCACACTA-C---GTCACCAAACTCTTACCAAATTT-TTGCCTCGT----TGTTCGATACATCAGTATAATC-TAA-TTTTTTACA-AATAAAA-T--CTCTAAGGTTTTGGTC--ACAAGCACA-T-ACAAATTTACTGAA---GAGCGGCATTTTAAGGTGTGC-AAATTTCAATATCCAGTTTAAT--G--GCGCACCGA--TTTTTTTT-GCACGTTCAGAAAAGGGCCACTTCGGTTAA--AAT-GCTGCT-CT-TTTATTT-TACTT---TTA-CAAACATTATA-TT--T-AAATAGAAT---TCAT------ATCAATAAAAGCAG--TATTTAGGTCTAAAC-AACACACCATCCCGTCAGCTA--TAGACAATTTA--TTATA-GGATATAATTAATCGCTGCATAAAA-TACCATTGT--TTT-GATGCACCGTTATACGTACCCCC-AACACTCTCCGTCTCAAATTTATGATTTAAAAAA----CGGAC-AACG--CGCGG---GA-AGTGTACTCAAGGTCGACTGGCG-CACCGAATTGTAATTCAATACTGTGTTGA--GGTCGGATGTTTGGTC-TCCT-ATTCAAAAT-AAA-GAAAGA-TGG-AACAA-TAGAA-CGACAACC-AATA-CATTGT-GTGTCTGCGGA-CATT--GTATACACCA-TGA--CACAAAAATT-TAAA-GTATGTTTGG-GGTTAGTAATGTGTAATTC--T-AATGTGATAAG-A--GCGCTAGAAAACCGTG-GTTTAGGCAC-TGACAA-ACAAGA---AGA-G-ACGAAAGAAGCTT---------AA
gi|5 : taGAA--AAAGTT---------G----TTGTGGT--TGGACCGTG-TCA--TG-TAT--AGAGCTTGGCAATTCT-TT---GCATTGAAGGAAAAAATC--AGT-GTGAGG-AAGAAGGAGGTTGTATACGTGACTGCAATT-TG-GTGCGGCGGAAGTGATACA--CAA--cgaatacgtcttgggaaaaactctatatatggaaaaagttgttgtggttggaccgtgtcatgtatagagcttggcaattctttgcattgaaggaaaaaatcagtgtgaggaagaaggaggttgtatacgtgactgcaatttggtgcggcggaagtgatacacaa
gi|6 : taaaaagcgcaaacttttcgatcatatttcattcacactacgtcaccaaactcttaccaaatttttgcctcgttgttcgatacatcagtataatctaattttttacaaataaaatctctaaggttttggtcacaagcacatacaaatttactgaagagcggcattttaaggtgtgcaaatttcaatatccagtttaatggcgcaccgattttttttgcacgttcagaaaagggccacttcggttaaaatgctgctcttttattttacttttacaaacattatatttaaatagaattcatatcaataaaagcagtatttaggtctaaacaacacaccatcccgtcagctatagacaatttattataggatataattaatcgctgcataaaataccattgttttgatgcaccgttatacgtacccccaacactctccgtctcaaatttatgatttaaaaaacggacaacgcgcgggaagtgtactcaaggtcgactggcgcaccgaattgtaattcaatactgtgttgaggtcggatgtttggtctcctattcaaaataaagaaagatggaacaatagaacgacaaccaatacattgtgtgtctgcggacattgtatacaccatgacacaaaaatttaaagtatgtttggggttagtaatgtgtaattctaatgtgataagagcgctagaaaaccgtggtttaggcactgacaaacaagaagagacgaaagaagcttaacgaatacgtcttgggaaaaactctatatatgTTAG--ATATTTCAT--AACTTA-C---GTCACCAA-CT-TTACTAG-TTT-T-GCCT-GT----TGTT-AATGAAT-GACATAATCGTA---TTTT-ACATAA--AAA-T--CT-TCAG-TTTTGGTC--ACAAACAAA-T-A---------TGAA---A--CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GC-CGACAA--TTGTTG---GCACGTTC-GAAAAGGGC-ACTTTGGTTAA--AAT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AA-TATA-T---T-AT------ATTA-TAAAAGCGT--T-T---GGT-T-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTATA-TAAAATAA-----CGT--CAT-AAAATAAT-TTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCTGTTTAGAAT------TTTCAAAAA----TG--C-AACG--T-TGGA-TGATAATG--------------CGGAG-C--CGAATT-TAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CC-A-ATTCCAACTAAAA-AAAA---TGGAAACAAGTAGAA-CGACA--C-AA-A-CA---TTGTGTCT-CGGA--ATA-TGTATACA-C--TGA--CACAAAAAGT-TTAAAGGATGGTTGG-AGT--G------GTAATCC--TTA---TGG-AAG-A-GGTG---------CGTG-G--TAG--AC-TGACAACA----A---AGA-G-ACGAA--AAAGTT---------AAATATCA-GGTGATGGAC---G-TCAT-TA-C-T--GGA--TTTGCA-TTCTGTTCCTGCATCAA---AAAAAATC--ATTTGTGAGGAAAA---GAGGTT-T-TACGTGA-TGAAAAT-CG-CAGC----GAAGT-AT-CA--CAA--TTT-----AC--------------CAGAAATGTCGTTTTAACCAATGC-ATGGAG-TGA--AGC---ATA-TG-TG-AGAAATGGTT
gi|7 : AAACTAAAAAGAGAGA-TTGAAACGA-TAGAA-CGACA--C-AA-AACA---T-GTGTCT-CAGA-CATT-GG-GTA----A-TG---CACAAAAGGT-TTAA-GGATGGTTGG-AGT--G------GTAATCC--T-A---TGG-AAG-A-AGCG---------CGTG-----AG--AC-C-ACAA-A----A---AGAGG-ACGAC--AAAGT--------------------GT-ATGGAC---G-TCA--TA-C-
gi|7 : TCAGAAA---TGTTTT----AATGC-ATGG-G-TGA--AGC---G-A-CA-TG-AGAAATGTTTGTC-ACAT-AAC--GACGGGATTTTGCAGAAGG----AAT-GAATAgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggtcagaaatgttttaatgcatgggtgaagcgacatgagaaatgtttgtcacataacgacgggattttgcagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtacatcacgaaaactacgttttgcacgtcgtcggcgttgcgcgacagcaatttgcaagactggttaaaggtctgaaataaatgttatttacagacaaaatgcattaaaattttcacagtgatattcagaaaaatgatcaatttgttgtgtaccaaataataatttgatatactagagcgtttacaaaaaaatatataaaaatgttcgcttttttt
gi|7 : aaactaaaaagagagattgaaacgatagaacgacacaaaacatgtgtctcagacattgggtaatgcacaaaaggtttaaggatggttggagtggtaatcctatggaagaagcgcgtgagaccacaaaaagaggacgacaaagtgtatggacgtcatacgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggACA-TCACGA-AAACTAC-GTTTTGCACGTC--GTCGGCG-TTGCGC-GACAG-CAATT--TG-CAAGA-CTG-GTTAAAGGTCTGAAATAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TTTCACAG-TGA-TAT--TCAG--AAAAATG-ATCAATTTGTTGT-GT-ACCAA--ATA-ATAATTTGATATA----CT-AGAGCGTTTACAA--AAAAA-TATATAAAAATG---------TTCGCTTTTTTatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtacatcacgaaaactacgttttgcacgtcgtcggcgttgcgcgacagcaatttgcaagactggttaaaggtctgaaataaatgttatttacagacaaaatgcattaaaattttcacagtgatattcagaaaaatgatcaatttgttgtgtaccaaataataatttgatatactagagcgtttacaaaaaaatatataaaaatgttcgcttttttt
gi|8 : aaactaaaaagagagattgaaacgatagaacgacacaaaacatgtgtctcagacattgggtaatgcacaaaaggtttaaggatggttggagtggtaatcctatggaagaagcgcgtgagaccacaaaaagaggacgacaaagtgtatggacgtcatacgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggtcagaaatgttttaatgcatgggtgaagcgacatgagaaatgtttgtcacataacgacgggattttgcagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-GGT--AAT-CG--GCGCAACGA--TTTTTT---GCACGTTC-GAAATGAGC-AGTTAGGTTGA--CAT-TTCGCT-TT-AT-ATTT-TA-TT---TTA-CAAACATTGTATTT--T-AAATATAAT---T-ACCGGTACATCAATAAAAGCGA--TAT---GGTCT-AAC-AA-ACA------TGTCAT-TA--TAAA------A--TTATA-TAAAATTA-----CGT--TAT-AAA-TAACACTTG--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTAGAAAT------TTTCAAAAA----TGA-C-AACG--T-TGGA-TTATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CCCT-ATTCAAAGTAAAA-GGAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---T-GTGTTT-CGGA-CATT-TTTATACA-TA-TGA--CACAAAAGGT-TTAA-GGATGGTTGG-AGT--G------GTAATAC--T-A---TGG-AAG-A-GGTG---------CGTG-T--TAT--AC-TGACAA-A----A---TGA-G-ACGAA--AAACTT---------AAAt
gi|9 : TGACTGAAATT-TG-CCGC----GAAGT-AT-CA--CAA--TTTA-C--ACA---TCTCTTTGCTCAGAAA---TGTTTT---TAATGC-ATGG-G-TGATGAGC---G-A-TA-TG-AGAAATGTTTGTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACA-TCATGA-AA-TTAC-GTTTTG-ACGTC--GTCAGAG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACTAAATGCA--TTAAAAAT-TT-CACAG-GGA-T-T--TCAA--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CG
Alignments
lowQualScore : 11 1 11 222222222 11111 111 111111 111111 111111 11 11111 111 111111 11111 33333333333333 111111 1 111 1 111111111 11 222222222 1111 11111111 111111111 111 11 11 22222 1 111 1111 1111111111 111 1111 111 1111 1111 111111111
lowQualScore : 5 66 55 00 4 777 4 777 3 9999 4 0 4 11 77 4 66 4 666 4 1 66 4 4 777777777 999999 4 4 00000 4 55 4 55 66 66 222 4 4 55 4 1 4 4 4 4 4 777 4 66 4 777 4 222222 66 777 5 5 5 444444 5 66 444444 66 888 5 2 11 66 5 5 66 5 22222 000 5 4 5 666666 99999 5 5 77 5 5 5 33333333333333 5 111111 5 5 5 66 5 5 3 0 5 66 5 5 5 333 5 5 77 0 5 66 5 5 5 555555555 11 888 5 5 66 1 000000000 3333 66 5 5 33333333 5 5 66 1 777777777 1 999 4 000 5 33 5 5 99 00 6 6 1 55555 99 3 3 111 6 6 5 5 2222 5 5 77 77 7777777777 000 0000 5 5 5 77 000 5 5 5 5 1 6 6 6 5 2222 5 99 5 5 55 5 5 66 5 5 88 5 5 5 5 66 5 66 55 5 5 5 5 66 66 5 5 5 5 66 5 66 2222 5 5 66 5 0 5 666666666 4 5
lowQualScore : . .. .. .. . ... . ... . .... . . . .. .. . .. . ... . . .. . . ......... ...... . . ..... . .. . .. .. .. ... . . .. . . . . . . . ... . .. . ... . ...... .. ... . . . ...... . .. ...... .. ... . . .. .. . . .. . ..... ... . . . ...... ..... . . .. . . . .............. . ...... . . . .. . . . . . .. . . . ... . . .. . . .. . . . ......... .. ... . . .. . ......... .... .. . . ........ . . .. . ......... . ... . ... . .. . . .. .. . . . ..... .. . . ... . . . . .... . . .. .. .......... ... .... . . . .. ... . . . . . . . . . .... . .. . . .. . . .. . . .. . . . . .. . .. .. . . . . .. .. . . . . .. . .. .... . . .. . . . ......... . .
lowQualScore : 0 11 55 66 4 888 4 000 3 4444 4 9 4 99 11 4 11 4 222 4 9 11 4 4 222222222 111111 0 0 00000 0 55 0 55 99 99 666 0 0 55 0 0 0 0 0 0 0 000 0 11 4 888 4 888888 11 888 0 0 0 444444 0 99 444444 99 888 0 2 99 99 0 0 99 0 55555 000 7 0 7 444444 33333 7 7 99 7 7 0 66666666666666 7 777777 7 7 7 77 0 0 2 0 0 99 0 0 0 888 0 0 55 0 0 99 0 0 0 222222222 99 888 0 0 44 1 000000000 2222 99 0 0 44444444 0 0 11 0 888888888 6 111 3 000 7 66 7 7 22 33 7 7 0 88888 22 2 3 777 7 7 7 7 1111 7 7 99 99 3333333333 000 1111 7 7 7 99 000 7 7 7 7 0 7 7 7 7 1111 7 22 0 0 22 0 0 99 0 0 22 0 0 0 0 99 0 99 44 0 0 0 0 99 99 0 0 0 0 99 0 99 1111 7 7 99 0 1 0 000000000 4 0
consensus : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-GT----TGTT-AATGGAT-GGTATAATCGTAA-TTTTC-ACA-AA--AAA-T--CT-TAAGGTTTTGGTC--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--T--TTTTTT--GCACGTTC-GAAAAGGGC-ACTTCGGTTGA--AAT-TNTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATGA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTA-GAAAT------TTTCAAAAA----CGG-C-AACG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CCCN-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-A-GGCG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAANTT---------AAAAATCG-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTA-C-ACA---TCTCTTAGTTCAGAAA---CGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTNTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-GAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
Reference ( family-5171 ) : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-GT----TGTT-AATGGAT-GGTATAATCGTAA-TTTTC-ACA-AA--AAA-T--CT-TAAGGTTTTGGTC--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--T--TTTTTT--GCACGTTC-GAAAAGGGC-ACTTCGGTTGA--AAT-TNTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATGA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTA-GAAAT------TTTCAAAAA----CGG-C-AACG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CCCN-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-A-GGCG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAANTT---------AAAAATCG-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTA-C-ACA---TCTCTTAGTTCAGAAA---CGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTNTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-GAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-AAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
gi|1 : GTCCC-AGAAAAAAACGCGAACTTTTTAG--ATA-TTCAT--AAACTAGC---GTCACCAAACT-TTACTAAATTTGT-GCCTAAT----TGTT-AGTGGAT-GGTATAATCGTAATTTTTT-ACA-AA--AAA-TAATT-CAAGTTTTTGGTTTGACAAACAAA-TAA---------TGAGAACAA-CGGCATTTAAAAG-TGGCAAAA-----ATATC-AGT--AAT-CGAAGCGCACCGGATT--TTTTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGATCAATCTTTGCTGCTAAT-ATTTATA-TTAAGTTATCAAACATTATATTTAATAAAATATAATTTGT-AT------AACAATAAAAGTGTGGTAT---GGTCT-AAC--A-ACA------TATCAA-TATTTAAA------ATTTTAT---ATTAAAATGAC-CGT--CAT-AAA-TAACATTTTTCTATGGA-----CGTTATTATTA---CATAAC-TCTTCT-TTAGGAAAT------TCTCAAAAAATCCCGG-C-AACGTAT-CAGACTGA-GATG--------------CGGCGCCACCGAATTGTAATTCAATACTGTTTGGAAGA--C-GAGGTTAGG-C-CCCA-ATTCAAACAAAAA-GAAAGATTGTAAACGATTAGAA-CGTCA--CAAA-A-CA----GTGTCT-CGGATCATTGGGTATACA-CATTGACCCATAAAGGGTGTT-AAGGATGATTGGTAAT--G------GTAATTCTTTA---TGT-AAGCATGGCG----------GTGTG--TAG--ACTTGACAA-A----AAATAGA-G-ACGAA--AAAATT---------AAAAATAG-GGTGATGTAC---GTTCGATTATC-TAAAGA-TTTTGCA-TTCG-TTTCTGCATT------AAAAATCATATCTGTGAGGTAAA---GGGAGT-T-TACGTTACTGAAATT-CGTCCGC----GAAGT-AT-CA--CAACCTTTC-CGACATCTTCTTTTAGTTCAGAAA---CGTTGT---TTATGCTATGG-GATGA--AACACTG-AGTAGTGAAGAAATGTTTTTCTACATGAGTGGGAC--TATTTTG-AGAAAAAAACAATGGAATATGACGTTTAAACAGACA-TCACGATAG-TTACGGTTTGG-ACGTCGTGTCAGCGTTTGCTCCGGCAGCCTATTATTGTTAAGAGCTGCGTTAAAG-TGTGATAAAAATGCTTGATTTAGCAGCCAAAATGCAATTT-AAAAT-TT-CACAGCCGAGTATTCTCAGGAAAAA-TG-ATCATTTT-TTGT-GTAACCAAAGATAGATAA--AGAGATATTAGCT-AGAA-GTTTCACA--AAAAAGTATAT-AGAATG---------TTCGGCTTTTTCT-GGGACAACCCTACGTA
gi|10 : gGGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-AT----TGTT-AGTGGAT-GGTATAATCGTAA-TTTTC-ACC-AA--AAA-T--AT-CAAGGTTTTGGTT--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--T--TTTTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--AAT-TTTGCT-CT-AT-ATTT-TA-TT---GTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGTGT--TAT---GGTCT-AAC-AA-ACA------TGTAAA-TA--TAAA------A--TTAT---A-TTAAATGG--CGT--CAT-AAA-TAACATTTT--TAT-GA-----Ctt
gi|11 : gagACGGGATTTTG-AGAAGG----AAT-GAATA
gi|11 : ACA-TCACGA-A--CTAC-GTTTTG-ACGTC--GTCGGCG-TTGCGCCGACAG-CAATTA-TG-CAAGA-CTG-GTTAAAG-TCTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-TGA-TAT--TCAG--AAAA-TG-ATCAATTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAG-GTTTAACA--AAAAA-TATAT-AAAATG---------TTCGCTTTTTatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaatgtacatcacgaactacgttttgacgtcgtcggcgttgcgccgacagcaattatgcaagactggttaaagtctgataaaaatgttatttacagacaaaatgcattaaaatttcacagtgatattcagaaaatgatcaatttgttgtgtaccaaataataatgatatactagaggtttaacaaaaaatatataaaatgttcgcttttt
gi|12 : acgggattttgagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaatgtGACGTT--AACTGACA-CCATGA-AG-TTAC-GTTTTG-ACGTC--GTCAGTG-TTGCGCCGGCAC-CTACTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAA-TGTT--ATTTA-CAGACTAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--T
gi|12 : GGTTGTCCC-AGAAAA--ACGCGAATATTAT-----TATTTGGT--ACACAA-CAAAATGATCA---T-TTTCTGAATAT-C-G-CT-GTGAAATTTT-AATGCAT-attcgcgtttttctgggacaacc
gi|12 : gacgttaactgacaccatgaagttacgttttgacgtcgtcagtgttgcgccggcacctactatgtaagactggttaaagtgtgataaaatgttatttacagactaa---------TTCGCGTTTTTCT-GGGACAACC
gi|13 : gacgttaactgacaccatgaagttacgttttgacgtcgtcagtgttgcgccggcacctactatgtaagactggttaaagtgtgataaaatgttatttacagactaaatgcattaaaatttcacagcgatattcagaaaatgatcattttgttgtgtaccaaataataataGGTTGTCCC-AGAAAA--ACGCGAACTTGTTAG--ATATTTCGT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-AT----TGTT-AATGGAT-GATA-AATCATAA-TTTTC-ACA-AA--AAAAT--AT-TAAAGCTTTGGTC--ACAAACAAA-T-A---------C-----------------AAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGC
gi|14 : cgagTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--CAT-TTCGCT-CT-AT-ATAT-TA-TT---TTA-CAAACATTGTATTT--C-AAATATAAT---T-AT------ATCAATAAAAGCGG--TAT---G
gi|15 : ATAGTAC-TTTTG-ACA-TA--ACA-T--CT-TAAAATTTTGGTC--ACAAACAAA-T-AATTA-----TGAA---AA-CGGCATCTAAAAG-GAGC-TAA-----ATATC-AGT--AAT-CG--
gi|16 : gTGACAGCAAAAC-TATCT-AAAAAG---------TTCGCGTCTTTCTGGGGACAACCCT-CGTAtaga
gi|17 : aTTG--GCACGTTC-GAAAAGGGC-ACTTTGGTTAA--AAT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-tctcacataaattt
gi|18 : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTC
gi|19 : atacgagG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
gi|2 : aGGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---ATCACCAAACT-TTACTAAATTT-T-GCCA-AT----TGTT-AGTGGAT-GGTATAATCGTAA-TTTTC-ACA-AG--AAA-T--AT-TAAGATTTTGGTC--ATAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCAA--T--TTTTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--AAT-TTTGCT-CT-TT-ATTT-TA-TT---GTA-CTGACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAA-TA--TAAA------A--TTAT---A-TAAAATGA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTAA-GAAAT------GTTCAAAAA----TGG-C-AACG--T-TGGA-TGATAATG--------------CGGTG-CACCGAATTGTAATTCAATACTGCGAGGC--A--C-GAGGATTGG-C-CCCA-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGA-AAG-A-TGTG---------CGTG-A--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAAAATAGGGACGAAAAAAATAG-GGTGATGGAC---G-TCA--TA-C-T--AGA-TTTCGCA-TTTT-TTCCTGCATT-----AAAAAATC--GTTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTT----ACA---TCTCTTAGTTTAGAAA---CATTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTTTC-ACAT-ATT-GGACGGTATTTTG-AGAAAG----AAT-GAATATGACGTT--AACAGACA-TCACAA-AG-CTCC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGCT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTCACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTAt
gi|20 : CGCGTTTTTCT-GGGACAACCCT-CGTA
gi|3 : ggtaGGGTGTCCAGAGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTCCTAAATTT-T-GCCT-GT----TGTT-AATGAAT-GATATAATCGTAT-TTTTT-A-A-CA--AAG-T--CT-TAAGGTTT-GGTG--ACAAA--AA-T-A---------TGAA---AA-CGGCATTTAAAAG--TGC-AAA-----ATATC-AAT--AAT-TG--GCGCACCGA--T--TTTTTTTTGCACGTTC-TAAAAGGGC-ACTTCGGTTAA--AGT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACGTTATATTT--T-AAATA--AT---T-AT-------TCAATAAAACCGT--TAT---GGTCT-AAC-AA-ACA------TCTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-GACACCTTCTGTTA-GAAAT------TTTCAAAAC----TGG-CAAACG--T-CGGA-TGATAA-G--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGTTTTGG-CTCCCT-ATTCAAACTAAAA-TAAAGA-TGG-AACGA-TAGAAGCGACT--C-AA-A-CA---T-TGTCT-CGGA-CATT-GGTAT--A-CA-TGA---ACAAAAAGT-TT-AAGGATGGTTGG-AGT--A------GT-ATCC--TA---TGG-AAG-G-GGTG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-GAACGAA--AAACTT---------AAAAATCA-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--A-TTGTGAGG-AAA---GAGATT-T-CATGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTACC-ACA---TCTCTTAGTTCAGAAA---TGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTGTC-ACAT-AGT-GGACGGTA-TTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-G-ATTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATT--TG-TATGA-CTG-GTTAAAG-TGTGATAAAAATGTT--A-TTA-CAGACAAGATATA--T---AAATATT-CACAG-CGA-TAT--TCAG--AAAA-TGAATCATTTTTGTGTGGT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAA-A--AAAAA-TATAT-GAAATGTTCCGTTTTTTCGCGTTTTTCT-GGGACAACCCT-CGTA
gi|4 : TTGTCCC-AGAAAA---CGCGAACTTTTTAG--ATATTTCATT-AAACTA-C---GTCACCAAACT-TTTCAAAATTT---GCCTTGT----TGTT-AATGAAT-GAT-TAATCGTA--TTTTG-TCA-AA--AAA-T--CT-TAAGGTTTTGGTG--ACAAACAAAAT-A---------TGAA---A--CGGAATTTAAAAG-GTGC-AAA------TATC-AGT--AATATG--GCGCACCGA--T--TTTT----GCACGTTC-TAAAATGGC-ACTTCGGTTAA--AGT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACGTTATATTT--T-AAATATAAT---T-AT------ATGAA-AAAAGCGT--TAT---GTTCT-AACCAA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT---AT-AAA-TAACATTTT---AT-GA-----CGTTATACGTA---CG-AACACTTTT-GTTA-GAAAT------TTTCAAAAAA---TGG-C-AGCG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAAT-CAATATTGTGTGG---G--C--AGGTTTGG-C-CCCCTATTCAAACTAAAA-TAAAGA-TGGAAACGA-TAGAA-CGACT--C-AA-A-CA---TGTTTCT-CGGA-CATT-GGTATACAGCA-TGA--CACAAAAAGT-TT-AAGGATGGTTGG-AGT--A------GTAATCC--TA---TGG-AAG-G-GGGG---------CG---G--TGG--AC-TGAC--------------------GAA--AAACTT---------AAAAATCA-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTTC-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-CACGTGACTGAAATTGCG-CCGC----GAAGT-AT-CAGCCAA--TTTACC-ACA---TCTCTTAGTTCAGAAA---TGTTTT---TAATGC-AT-G-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTCAC-ACAT-AGT-GGACGGCATTTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACATTCACGA-AG-TTAC--TTTTA-ACATC--GTCAGCG-TTGCGCCGG-AG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGAT-AAAATGTT--ATTTA-CAGACAAAATGCA--TA-AATAT-TT-CACAG-CGA-TAT--TCAG---AAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CTCAGAA-GTTTAACA--AAAAT-TAT-T-TGAATG---------TTCGCGTTTTTCT-GGGACAACCCT-t
gi|5 : gggtAAAA--GCGCAAACTTTTCGATCATATTTCATTCACACTA-C---GTCACCAAACTCTTACCAAATTT-TTGCCTCGT----TGTTCGATACATCAGTATAATC-TAA-TTTTTTACA-AATAAAA-T--CTCTAAGGTTTTGGTC--ACAAGCACA-T-ACAAATTTACTGAA---GAGCGGCATTTTAAGGTGTGC-AAATTTCAATATCCAGTTTAAT--G--GCGCACCGA--T--TTTTTTT-GCACGTTCAGAAAAGGGCCACTTCGGTTAA--AAT-GCTGCT-CT-TTTATTT-TACTT---TTA-CAAACATTATA-TT--T-AAATAGAAT---TCAT------ATCAATAAAAGCAG--TATTTAGGTCTAAAC-AACACACCATCCCGTCAGCTA--TAGACAATTTA--TTATAGGA-TATAATTAATCGCTGCATAAAA-TACCATTGT--TTT-GATGCACCGTTATACGTACCCCC-AACACTCTCCGTCT-CAAATTTATGATTTAAAAAA----CGGAC-AACG--CGCGG---GA-AGTGTACTCAAGGTCGACTGGCG-CACCGAATTGTAATTCAATACTGTGTTGA--GGTCGGATGTTTGGTC-TCCT-ATTCAAAAT-AAA-GAAAGA-TGG-AACAA-TAGAA-CGACAACC-AATA-CATTGTGTGTCTGCGGA-CATT--GTATACACCA-TGA--CACAAAAATT-TA-AAGTATGTTTGG-GGTTAGTAATGTGTAATTC--TAATGTGATAAG-A--GCGCTAGAAAACCGTG-GTTTAGGCAC-TGACAA-ACAAGA---AGA-G-ACGAAAGAAGCTT---------AA
gi|5 : taGAA--AAAGTT---------G----TTGTGGT--TGGACCGTG-TCA--TG-TAT--AGAGCTTGGCAATTCT-TT---GCATTGAAGGAAAAAATC--AGT-GTGAGG-AAGAAGGAGGTTGTATACGTGACTGCAATT-TG-GTGCGGCGGAAGTGATACA--CAA--cgaatacgtcttgggaaaaactctatatatggaaaaagttgttgtggttggaccgtgtcatgtatagagcttggcaattctttgcattgaaggaaaaaatcagtgtgaggaagaaggaggttgtatacgtgactgcaatttggtgcggcggaagtgatacacaa
gi|6 : taaaaagcgcaaacttttcgatcatatttcattcacactacgtcaccaaactcttaccaaatttttgcctcgttgttcgatacatcagtataatctaattttttacaaataaaatctctaaggttttggtcacaagcacatacaaatttactgaagagcggcattttaaggtgtgcaaatttcaatatccagtttaatggcgcaccgattttttttgcacgttcagaaaagggccacttcggttaaaatgctgctcttttattttacttttacaaacattatatttaaatagaattcatatcaataaaagcagtatttaggtctaaacaacacaccatcccgtcagctatagacaatttattataggatataattaatcgctgcataaaataccattgttttgatgcaccgttatacgtacccccaacactctccgtctcaaatttatgatttaaaaaacggacaacgcgcgggaagtgtactcaaggtcgactggcgcaccgaattgtaattcaatactgtgttgaggtcggatgtttggtctcctattcaaaataaagaaagatggaacaatagaacgacaaccaatacattgtgtgtctgcggacattgtatacaccatgacacaaaaatttaaagtatgtttggggttagtaatgtgtaattctaatgtgataagagcgctagaaaaccgtggtttaggcactgacaaacaagaagagacgaaagaagcttaacgaatacgtcttgggaaaaactctatatatgTTAG--ATATTTCAT--AACTTA-C---GTCACCAA-CT-TTACTAG-TTT-T-GCCT-GT----TGTT-AATGAAT-GACATAATCGTA---TTTT-ACATAA--AAA-T--CT-TCAG-TTTTGGTC--ACAAACAAA-T-A---------TGAA---A--CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GC----CGA--CAATTGTTG--GCACGTTC-GAAAAGGGC-ACTTTGGTTAA--AAT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AA-TATA-T---T-AT------ATTA-TAAAAGCGT--T-T---GGT-T-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT--CAT-AAAATAAT-TTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCTGTTT-AGAAT------TTTCAAAAA----TG--C-AACG--T-TGGA-TGATAATG--------------CGGAG-C--CGAATT-TAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CC-A-ATTCCAACTAAAA-AAAA---TGGAAACAAGTAGAA-CGACA--C-AA-A-CAT--TGTGTCT-CGGA--ATA-TGTATACA-C--TGA--CACAAAAAGT-TTAAAGGATGGTTGG-AGT--G------GTAATCCT-TA---TGG-AAG-A-GGTG---------CGTG-G--TAG--AC-TGACAACA----A---AGA-G-ACGAA--AAAGTT---------AAATATCA-GGTGATGGAC---G-TCAT-TA-C-T--GGA--TTTGCA-TTCTGTTCCTGCATCAA---AAAAAATC--ATTTGTGAGGAAAA---GAGGTT-T-TACGTGA-TGAAAAT-CG-CAGC----GAAGT-AT-CA--CAA--TTTA-C-----------------CAGAAATGTCGTTTTAACCAATGC-ATGGAG-TGA--AGC---ATA-TG-TG-AGAAATGGTT
gi|7 : AAACTAAAAAGAGAGA-TTGAAACGA-TAGAA-CGACA--C-AA-AACA---TGTGTCT-CAGA-CATT-GG-GTA----A-TG---CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-A-AGCG---------CGTG-----AG--AC-C-ACAA-A----A---AGAGG-ACGAC--AAAGT--------------------GT-ATGGAC---G-TCA--TA-C-
gi|7 : TCAGAAA---TGTTTT----AATGC-ATGG-G-TGA--AGC---G-A-CA-TG-AGAAATGTTTGTC-ACAT-AAC--GACGGGATTTTGCAGAAGG----AAT-GAATAgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggtcagaaatgttttaatgcatgggtgaagcgacatgagaaatgtttgtcacataacgacgggattttgcagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtacatcacgaaaactacgttttgcacgtcgtcggcgttgcgcgacagcaatttgcaagactggttaaaggtctgaaataaatgttatttacagacaaaatgcattaaaattttcacagtgatattcagaaaaatgatcaatttgttgtgtaccaaataataatttgatatactagagcgtttacaaaaaaatatataaaaatgttcgcttttttt
gi|7 : aaactaaaaagagagattgaaacgatagaacgacacaaaacatgtgtctcagacattgggtaatgcacaaaaggtttaaggatggttggagtggtaatcctatggaagaagcgcgtgagaccacaaaaagaggacgacaaagtgtatggacgtcatacgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggACA-TCACGA-AAACTAC-GTTTTGCACGTC--GTCGGCG-TTGCGC-GACAG-CAATT--TG-CAAGA-CTG-GTTAAAGGTCTGAAATAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TTTCACAG-TGA-TAT--TCAG--AAAAATG-ATCAATTTGTTGT-GT-ACCAA--ATA-ATAATTTGATATA----CT-AGAGCGTTTACAA--AAAAA-TATATAAAAATG---------TTCGCTTTTTTatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtacatcacgaaaactacgttttgcacgtcgtcggcgttgcgcgacagcaatttgcaagactggttaaaggtctgaaataaatgttatttacagacaaaatgcattaaaattttcacagtgatattcagaaaaatgatcaatttgttgtgtaccaaataataatttgatatactagagcgtttacaaaaaaatatataaaaatgttcgcttttttt
gi|8 : aaactaaaaagagagattgaaacgatagaacgacacaaaacatgtgtctcagacattgggtaatgcacaaaaggtttaaggatggttggagtggtaatcctatggaagaagcgcgtgagaccacaaaaagaggacgacaaagtgtatggacgtcatacgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggtcagaaatgttttaatgcatgggtgaagcgacatgagaaatgtttgtcacataacgacgggattttgcagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-GGT--AAT-CG--GCGCAACGA--T--TTTTT---GCACGTTC-GAAATGAGC-AGTTAGGTTGA--CAT-TTCGCT-TT-AT-ATTT-TA-TT---TTA-CAAACATTGTATTT--T-AAATATAAT---T-ACCGGTACATCAATAAAAGCGA--TAT---GGTCT-AAC-AA-ACA------TGTCAT-TA--TAAA------A--TTAT---A-TAAAATTA--CGT--TAT-AAA-TAACACTTG--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTA-GAAAT------TTTCAAAAA----TGA-C-AACG--T-TGGA-TTATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CCCT-ATTCAAAGTAAAA-GGAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTTT-CGGA-CATT-TTTATACA-TA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATAC--TA---TGG-AAG-A-GGTG---------CGTG-T--TAT--AC-TGACAA-A----A---TGA-G-ACGAA--AAACTT---------AAAt
gi|9 : TGACTGAAATT-TG-CCGC----GAAGT-AT-CA--CAA--TTTA-C-ACA---TCTCTTTGCTCAGAAA---TGTTTT---TAATGC-ATGG-G-TGATGAGC---G-A-TA-TG-AGAAATGTTTGTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACA-TCATGA-AA-TTAC-GTTTTG-ACGTC--GTCAGAG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACTAAATGCA--TTAAAAAT-TT-CACAG-GGA-T-T--TCAA--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CG
Alignments
lowQualScore : 11 1 11 222222222 11111 111 111111 111111 111111 11 11111 111 111111 11111 33333333333333 111111 1 111 1 111111111 11 222222222 1111 11111111 111111111 111 11 11 22222 1 111 1111 1111111111 111 1111 111 1111 1111 111111111
lowQualScore : 5 66 55 00 4 777 4 777 3 9999 4 0 4 11 77 4 66 4 666 4 1 66 4 4 777777777 999999 4 4 00000 4 55 4 55 66 66 222 4 4 55 4 1 4 4 4 4 4 777 4 66 4 777 4 222222 66 777 5 5 5 444444 5 66 444444 66 888 5 2 11 66 5 5 66 5 22222 000 5 4 5 666666 99999 5 5 77 5 5 5 33333333333333 5 111111 5 5 5 66 5 5 3 0 5 66 5 5 5 333 5 5 77 0 5 66 5 5 5 555555555 11 888 5 5 66 1 000000000 3333 66 5 5 33333333 5 5 66 1 777777777 1 999 4 000 5 33 5 5 99 00 6 6 1 55555 99 3 3 111 6 6 5 5 2222 5 5 77 77 7777777777 000 0000 5 5 5 77 000 5 5 5 5 1 6 6 6 5 2222 5 99 5 5 55 5 5 66 5 5 88 5 5 5 5 66 5 66 55 5 5 5 5 66 66 5 5 5 5 66 5 66 2222 5 5 66 5 5 666666666 4 5
lowQualScore : . .. .. .. . ... . ... . .... . . . .. .. . .. . ... . . .. . . ......... ...... . . ..... . .. . .. .. .. ... . . .. . . . . . . . ... . .. . ... . ...... .. ... . . . ...... . .. ...... .. ... . . .. .. . . .. . ..... ... . . . ...... ..... . . .. . . . .............. . ...... . . . .. . . . . . .. . . . ... . . .. . . .. . . . ......... .. ... . . .. . ......... .... .. . . ........ . . .. . ......... . ... . ... . .. . . .. .. . . . ..... .. . . ... . . . . .... . . .. .. .......... ... .... . . . .. ... . . . . . . . . . .... . .. . . .. . . .. . . .. . . . . .. . .. .. . . . . .. .. . . . . .. . .. .... . . .. . . ......... . .
lowQualScore : 0 11 55 66 4 888 4 000 3 4444 4 9 4 99 11 4 11 4 222 4 9 11 4 4 222222222 111111 0 0 00000 0 55 0 55 99 99 666 0 0 55 0 0 0 0 0 0 0 000 0 11 4 888 4 888888 11 888 0 0 0 444444 0 99 444444 99 888 0 2 99 99 0 0 99 0 55555 000 7 0 7 444444 33333 7 7 99 7 7 0 66666666666666 7 777777 7 7 7 77 0 0 2 0 0 99 0 0 0 888 0 0 55 0 0 99 0 0 0 222222222 99 888 0 0 44 1 000000000 2222 99 0 0 44444444 0 0 11 0 888888888 6 111 3 000 7 66 7 7 22 33 7 7 0 88888 22 2 3 777 7 7 7 7 1111 7 7 99 99 3333333333 000 1111 7 7 7 99 000 7 7 7 7 0 7 7 7 7 1111 7 22 0 0 22 0 0 99 0 0 22 0 0 0 0 99 0 99 44 0 0 0 0 99 99 0 0 0 0 99 0 99 1111 7 7 99 0 0 000000000 4 0
consensus : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-GT----TGTT-AATGGAT-GGTATAATCGTAA-TTTTC-ACA-AA--AAA-T--CT-TAAGGTTTTGGTC--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--T--TTTTTT--GCACGTTC-GAAAAGGGC-ACTTCGGTTGA--AAT-TNTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATGA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTA-GAAAT------TTTCAAAAA----CGG-C-AACG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CCCN-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-A-GGCG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAANTT---------AAAAATCG-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTA-C-ACA---TCTCTTAGTTCAGAAA---CGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTNTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-GAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
Reference ( family-5171 ) : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-GT----TGTT-AATGGAT-GGTATAATCGTAA-TTTTC-ACA-AA--AAA-T--CT-TAAGGTTTTGGTC--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--T--TTTTTT--GCACGTTC-GAAAAGGGC-ACTTCGGTTGA--AAT-TNTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATGA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTA-GAAAT------TTTCAAAAA----CGG-C-AACG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CCCN-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-A-GGCG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAANTT---------AAAAATCG-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTA-C-ACA---TCTCTTAGTTCAGAAA---CGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTNTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-GAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
gi|1 : GTCCC-AGAAAAAAACGCGAACTTTTTAG--ATA-TTCAT--AAACTAGC---GTCACCAAACT-TTACTAAATTTGT-GCCTAAT----TGTT-AGTGGAT-GGTATAATCGTAATTTTTT-ACA-AA--AAA-TAATT-CAAGTTTTTGGTTTGACAAACAAA-TAA---------TGAGAACAA-CGGCATTTAAAAG-TGGCAAAA-----ATATC-AGT--AAT-CGAAGCGCACCGGATT--TTTTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGATCAATCTTTGCTGCTAAT-ATTTATA-TTAAGTTATCAAACATTATATTTAATAAAATATAATTTGT-AT------AACAATAAAAGTGTGGTAT---GGTCT-AAC--A-ACA------TATCAA-TATTTAAA------ATTTTAT---ATTAAAATGAC-CGT--CAT-AAA-TAACATTTTTCTATGGA-----CGTTATTATTA---CATAAC-TCTTCT-TTAGGAAAT------TCTCAAAAAATCCCGG-C-AACGTAT-CAGACTGA-GATG--------------CGGCGCCACCGAATTGTAATTCAATACTGTTTGGAAGA--C-GAGGTTAGG-C-CCCA-ATTCAAACAAAAA-GAAAGATTGTAAACGATTAGAA-CGTCA--CAAA-A-CA----GTGTCT-CGGATCATTGGGTATACA-CATTGACCCATAAAGGGTGTT-AAGGATGATTGGTAAT--G------GTAATTCTTTA---TGT-AAGCATGGCG----------GTGTG--TAG--ACTTGACAA-A----AAATAGA-G-ACGAA--AAAATT---------AAAAATAG-GGTGATGTAC---GTTCGATTATC-TAAAGA-TTTTGCA-TTCG-TTTCTGCATT------AAAAATCATATCTGTGAGGTAAA---GGGAGT-T-TACGTTACTGAAATT-CGTCCGC----GAAGT-AT-CA--CAACCTTTC-CGACATCTTCTTTTAGTTCAGAAA---CGTTGT---TTATGCTATGG-GATGA--AACACTG-AGTAGTGAAGAAATGTTTTTCTACATGAGTGGGAC--TATTTTG-AGAAAAAAACAATGGAATATGACGTTTAAACAGACA-TCACGATAG-TTACGGTTTGG-ACGTCGTGTCAGCGTTTGCTCCGGCAGCCTATTATTGTTAAGAGCTGCGTTAAAG-TGTGATAAAAATGCTTGATTTAGCAGCCAAAATGCAATTT-AAAAT-TT-CACAGCCGAGTATTCTCAGGAAAAA-TG-ATCATTTT-TTGT-GTAACCAAAGATAGATAA--AGAGATATTAGCT-AGAA-GTTTCACA--AAAAAGTATAT-AGAATG---------TTCGGCTTTTTCT-GGGACAACCCTACGTA
gi|10 : gGGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-AT----TGTT-AGTGGAT-GGTATAATCGTAA-TTTTC-ACC-AA--AAA-T--AT-CAAGGTTTTGGTT--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--T--TTTTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--AAT-TTTGCT-CT-AT-ATTT-TA-TT---GTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGTGT--TAT---GGTCT-AAC-AA-ACA------TGTAAA-TA--TAAA------A--TTAT---A-TTAAATGG--CGT--CAT-AAA-TAACATTTT--TAT-GA-----Ctt
gi|11 : gagACGGGATTTTG-AGAAGG----AAT-GAATA
gi|11 : ACA-TCACGA-A--CTAC-GTTTTG-ACGTC--GTCGGCG-TTGCGCCGACAG-CAATTA-TG-CAAGA-CTG-GTTAAAG-TCTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-TGA-TAT--TCAG--AAAA-TG-ATCAATTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAG-GTTTAACA--AAAAA-TATAT-AAAATG---------TTCGCTTTTTatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaatgtacatcacgaactacgttttgacgtcgtcggcgttgcgccgacagcaattatgcaagactggttaaagtctgataaaaatgttatttacagacaaaatgcattaaaatttcacagtgatattcagaaaatgatcaatttgttgtgtaccaaataataatgatatactagaggtttaacaaaaaatatataaaatgttcgcttttt
gi|12 : acgggattttgagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaatgtGACGTT--AACTGACA-CCATGA-AG-TTAC-GTTTTG-ACGTC--GTCAGTG-TTGCGCCGGCAC-CTACTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAA-TGTT--ATTTA-CAGACTAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--T
gi|12 : GGTTGTCCC-AGAAAA--ACGCGAATATTAT-----TATTTGGT--ACACAA-CAAAATGATCA---T-TTTCTGAATAT-C-G-CT-GTGAAATTTT-AATGCAT-attcgcgtttttctgggacaacc
gi|12 : gacgttaactgacaccatgaagttacgttttgacgtcgtcagtgttgcgccggcacctactatgtaagactggttaaagtgtgataaaatgttatttacagactaa---------TTCGCGTTTTTCT-GGGACAACC
gi|13 : gacgttaactgacaccatgaagttacgttttgacgtcgtcagtgttgcgccggcacctactatgtaagactggttaaagtgtgataaaatgttatttacagactaaatgcattaaaatttcacagcgatattcagaaaatgatcattttgttgtgtaccaaataataataGGTTGTCCC-AGAAAA--ACGCGAACTTGTTAG--ATATTTCGT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-AT----TGTT-AATGGAT-GATA-AATCATAA-TTTTC-ACA-AA--AAAAT--AT-TAAAGCTTTGGTC--ACAAACAAA-T-A---------C-----------------AAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGC
gi|14 : cgagTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--CAT-TTCGCT-CT-AT-ATAT-TA-TT---TTA-CAAACATTGTATTT--C-AAATATAAT---T-AT------ATCAATAAAAGCGG--TAT---G
gi|15 : ATAGTAC-TTTTG-ACA-TA--ACA-T--CT-TAAAATTTTGGTC--ACAAACAAA-T-AATTA-----TGAA---AA-CGGCATCTAAAAG-GAGC-TAA-----ATATC-AGT--AAT-CG--
gi|16 : gTGACAGCAAAAC-TATCT-AAAAAG---------TTCGCGTCTTTCTGGGGACAACCCT-CGTAtaga
gi|17 : aTTG--GCACGTTC-GAAAAGGGC-ACTTTGGTTAA--AAT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-tctcacataaattt
gi|18 : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTC
gi|19 : atacgagG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
gi|2 : aGGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---ATCACCAAACT-TTACTAAATTT-T-GCCA-AT----TGTT-AGTGGAT-GGTATAATCGTAA-TTTTC-ACA-AG--AAA-T--AT-TAAGATTTTGGTC--ATAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCAA--T--TTTTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--AAT-TTTGCT-CT-TT-ATTT-TA-TT---GTA-CTGACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAA-TA--TAAA------A--TTAT---A-TAAAATGA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTAA-GAAAT------GTTCAAAAA----TGG-C-AACG--T-TGGA-TGATAATG--------------CGGTG-CACCGAATTGTAATTCAATACTGCGAGGC--A--C-GAGGATTGG-C-CCCA-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGA-AAG-A-TGTG---------CGTG-A--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAAAATAGGGACGAAAAAAATAG-GGTGATGGAC---G-TCA--TA-C-T--AGA-TTTCGCA-TTTT-TTCCTGCATT-----AAAAAATC--GTTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTT----ACA---TCTCTTAGTTTAGAAA---CATTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTTTC-ACAT-ATT-GGACGGTATTTTG-AGAAAG----AAT-GAATATGACGTT--AACAGACA-TCACAA-AG-CTCC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGCT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTCACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTAt
gi|20 : CGCGTTTTTCT-GGGACAACCCT-CGTA
gi|3 : ggtaGGGTGTCCAGAGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTCCTAAATTT-T-GCCT-GT----TGTT-AATGAAT-GATATAATCGTAT-TTTTT-A-A-CA--AAG-T--CT-TAAGGTTT-GGTG--ACAAA--AA-T-A---------TGAA---AA-CGGCATTTAAAAG--TGC-AAA-----ATATC-AAT--AAT-TG--GCGCACCGA--T--TTTTTTTTGCACGTTC-TAAAAGGGC-ACTTCGGTTAA--AGT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACGTTATATTT--T-AAATA--AT---T-AT-------TCAATAAAACCGT--TAT---GGTCT-AAC-AA-ACA------TCTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-GACACCTTCTGTTA-GAAAT------TTTCAAAAC----TGG-CAAACG--T-CGGA-TGATAA-G--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGTTTTGG-CTCCCT-ATTCAAACTAAAA-TAAAGA-TGG-AACGA-TAGAAGCGACT--C-AA-A-CA---T-TGTCT-CGGA-CATT-GGTAT--A-CA-TGA---ACAAAAAGT-TT-AAGGATGGTTGG-AGT--A------GT-ATCC--TA---TGG-AAG-G-GGTG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-GAACGAA--AAACTT---------AAAAATCA-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--A-TTGTGAGG-AAA---GAGATT-T-CATGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTACC-ACA---TCTCTTAGTTCAGAAA---TGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTGTC-ACAT-AGT-GGACGGTA-TTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-G-ATTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATT--TG-TATGA-CTG-GTTAAAG-TGTGATAAAAATGTT--A-TTA-CAGACAAGATATA--T---AAATATT-CACAG-CGA-TAT--TCAG--AAAA-TGAATCATTTTTGTGTGGT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAA-A--AAAAA-TATAT-GAAATGTTCCGTTTTTTCGCGTTTTTCT-GGGACAACCCT-CGTA
gi|4 : TTGTCCC-AGAAAA---CGCGAACTTTTTAG--ATATTTCATT-AAACTA-C---GTCACCAAACT-TTTCAAAATTT---GCCTTGT----TGTT-AATGAAT-GAT-TAATCGTA--TTTTG-TCA-AA--AAA-T--CT-TAAGGTTTTGGTG--ACAAACAAAAT-A---------TGAA---A--CGGAATTTAAAAG-GTGC-AAA------TATC-AGT--AATATG--GCGCACCGA--T--TTTT----GCACGTTC-TAAAATGGC-ACTTCGGTTAA--AGT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACGTTATATTT--T-AAATATAAT---T-AT------ATGAA-AAAAGCGT--TAT---GTTCT-AACCAA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT---AT-AAA-TAACATTTT---AT-GA-----CGTTATACGTA---CG-AACACTTTT-GTTA-GAAAT------TTTCAAAAAA---TGG-C-AGCG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAAT-CAATATTGTGTGG---G--C--AGGTTTGG-C-CCCCTATTCAAACTAAAA-TAAAGA-TGGAAACGA-TAGAA-CGACT--C-AA-A-CA---TGTTTCT-CGGA-CATT-GGTATACAGCA-TGA--CACAAAAAGT-TT-AAGGATGGTTGG-AGT--A------GTAATCC--TA---TGG-AAG-G-GGGG---------CG---G--TGG--AC-TGAC--------------------GAA--AAACTT---------AAAAATCA-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTTC-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-CACGTGACTGAAATTGCG-CCGC----GAAGT-AT-CAGCCAA--TTTACC-ACA---TCTCTTAGTTCAGAAA---TGTTTT---TAATGC-AT-G-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTCAC-ACAT-AGT-GGACGGCATTTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACATTCACGA-AG-TTAC--TTTTA-ACATC--GTCAGCG-TTGCGCCGG-AG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGAT-AAAATGTT--ATTTA-CAGACAAAATGCA--TA-AATAT-TT-CACAG-CGA-TAT--TCAG---AAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CTCAGAA-GTTTAACA--AAAAT-TATTT-G-AATG---------TTCGCGTTTTTCT-GGGACAACCCT-t
gi|5 : gggtAAAA--GCGCAAACTTTTCGATCATATTTCATTCACACTA-C---GTCACCAAACTCTTACCAAATTT-TTGCCTCGT----TGTTCGATACATCAGTATAATC-TAA-TTTTTTACA-AATAAAA-T--CTCTAAGGTTTTGGTC--ACAAGCACA-T-ACAAATTTACTGAA---GAGCGGCATTTTAAGGTGTGC-AAATTTCAATATCCAGTTTAAT--G--GCGCACCGA--T--TTTTTTT-GCACGTTCAGAAAAGGGCCACTTCGGTTAA--AAT-GCTGCT-CT-TTTATTT-TACTT---TTA-CAAACATTATA-TT--T-AAATAGAAT---TCAT------ATCAATAAAAGCAG--TATTTAGGTCTAAAC-AACACACCATCCCGTCAGCTA--TAGACAATTTA--TTATAGGA-TATAATTAATCGCTGCATAAAA-TACCATTGT--TTT-GATGCACCGTTATACGTACCCCC-AACACTCTCCGTCT-CAAATTTATGATTTAAAAAA----CGGAC-AACG--CGCGG---GA-AGTGTACTCAAGGTCGACTGGCG-CACCGAATTGTAATTCAATACTGTGTTGA--GGTCGGATGTTTGGTC-TCCT-ATTCAAAAT-AAA-GAAAGA-TGG-AACAA-TAGAA-CGACAACC-AATA-CATTGTGTGTCTGCGGA-CATT--GTATACACCA-TGA--CACAAAAATT-TA-AAGTATGTTTGG-GGTTAGTAATGTGTAATTC--TAATGTGATAAG-A--GCGCTAGAAAACCGTG-GTTTAGGCAC-TGACAA-ACAAGA---AGA-G-ACGAAAGAAGCTT---------AA
gi|5 : taGAA--AAAGTT---------G----TTGTGGT--TGGACCGTG-TCA--TG-TAT--AGAGCTTGGCAATTCT-TT---GCATTGAAGGAAAAAATC--AGT-GTGAGG-AAGAAGGAGGTTGTATACGTGACTGCAATT-TG-GTGCGGCGGAAGTGATACA--CAA--cgaatacgtcttgggaaaaactctatatatggaaaaagttgttgtggttggaccgtgtcatgtatagagcttggcaattctttgcattgaaggaaaaaatcagtgtgaggaagaaggaggttgtatacgtgactgcaatttggtgcggcggaagtgatacacaa
gi|6 : taaaaagcgcaaacttttcgatcatatttcattcacactacgtcaccaaactcttaccaaatttttgcctcgttgttcgatacatcagtataatctaattttttacaaataaaatctctaaggttttggtcacaagcacatacaaatttactgaagagcggcattttaaggtgtgcaaatttcaatatccagtttaatggcgcaccgattttttttgcacgttcagaaaagggccacttcggttaaaatgctgctcttttattttacttttacaaacattatatttaaatagaattcatatcaataaaagcagtatttaggtctaaacaacacaccatcccgtcagctatagacaatttattataggatataattaatcgctgcataaaataccattgttttgatgcaccgttatacgtacccccaacactctccgtctcaaatttatgatttaaaaaacggacaacgcgcgggaagtgtactcaaggtcgactggcgcaccgaattgtaattcaatactgtgttgaggtcggatgtttggtctcctattcaaaataaagaaagatggaacaatagaacgacaaccaatacattgtgtgtctgcggacattgtatacaccatgacacaaaaatttaaagtatgtttggggttagtaatgtgtaattctaatgtgataagagcgctagaaaaccgtggtttaggcactgacaaacaagaagagacgaaagaagcttaacgaatacgtcttgggaaaaactctatatatgTTAG--ATATTTCAT--AACTTA-C---GTCACCAA-CT-TTACTAG-TTT-T-GCCT-GT----TGTT-AATGAAT-GACATAATCGTA---TTTT-ACATAA--AAA-T--CT-TCAG-TTTTGGTC--ACAAACAAA-T-A---------TGAA---A--CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GC----CGA--CAATTGTTG--GCACGTTC-GAAAAGGGC-ACTTTGGTTAA--AAT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AA-TATA-T---T-AT------ATTA-TAAAAGCGT--T-T---GGT-T-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT--CAT-AAAATAAT-TTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCTGTTT-AGAAT------TTTCAAAAA----TG--C-AACG--T-TGGA-TGATAATG--------------CGGAG-C--CGAATT-TAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CC-A-ATTCCAACTAAAA-AAAA---TGGAAACAAGTAGAA-CGACA--C-AA-A-CAT--TGTGTCT-CGGA--ATA-TGTATACA-C--TGA--CACAAAAAGT-TTAAAGGATGGTTGG-AGT--G------GTAATCCT-TA---TGG-AAG-A-GGTG---------CGTG-G--TAG--AC-TGACAACA----A---AGA-G-ACGAA--AAAGTT---------AAATATCA-GGTGATGGAC---G-TCAT-TA-C-T--GGA--TTTGCA-TTCTGTTCCTGCATCAA---AAAAAATC--ATTTGTGAGGAAAA---GAGGTT-T-TACGTGA-TGAAAAT-CG-CAGC----GAAGT-AT-CA--CAA--TTTA-C-----------------CAGAAATGTCGTTTTAACCAATGC-ATGGAG-TGA--AGC---ATA-TG-TG-AGAAATGGTT
gi|7 : AAACTAAAAAGAGAGA-TTGAAACGA-TAGAA-CGACA--C-AA-AACA---TGTGTCT-CAGA-CATT-GG-GTA----A-TG---CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-A-AGCG---------CGTG-----AG--AC-C-ACAA-A----A---AGAGG-ACGAC--AAAGT--------------------GT-ATGGAC---G-TCA--TA-C-
gi|7 : TCAGAAA---TGTTTT----AATGC-ATGG-G-TGA--AGC---G-A-CA-TG-AGAAATGTTTGTC-ACAT-AAC--GACGGGATTTTGCAGAAGG----AAT-GAATAgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggtcagaaatgttttaatgcatgggtgaagcgacatgagaaatgtttgtcacataacgacgggattttgcagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtacatcacgaaaactacgttttgcacgtcgtcggcgttgcgcgacagcaatttgcaagactggttaaaggtctgaaataaatgttatttacagacaaaatgcattaaaattttcacagtgatattcagaaaaatgatcaatttgttgtgtaccaaataataatttgatatactagagcgtttacaaaaaaatatataaaaatgttcgcttttttt
gi|7 : aaactaaaaagagagattgaaacgatagaacgacacaaaacatgtgtctcagacattgggtaatgcacaaaaggtttaaggatggttggagtggtaatcctatggaagaagcgcgtgagaccacaaaaagaggacgacaaagtgtatggacgtcatacgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggACA-TCACGA-AAACTAC-GTTTTGCACGTC--GTCGGCG-TTGCGC-GACAG-CAATT--TG-CAAGA-CTG-GTTAAAGGTCTGAAATAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TTTCACAG-TGA-TAT--TCAG--AAAAATG-ATCAATTTGTTGT-GT-ACCAA--ATA-ATAATTTGATATA----CT-AGAGCGTTTACAA--AAAAA-TATATAAAAATG---------TTCGCTTTTTTatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtacatcacgaaaactacgttttgcacgtcgtcggcgttgcgcgacagcaatttgcaagactggttaaaggtctgaaataaatgttatttacagacaaaatgcattaaaattttcacagtgatattcagaaaaatgatcaatttgttgtgtaccaaataataatttgatatactagagcgtttacaaaaaaatatataaaaatgttcgcttttttt
gi|8 : aaactaaaaagagagattgaaacgatagaacgacacaaaacatgtgtctcagacattgggtaatgcacaaaaggtttaaggatggttggagtggtaatcctatggaagaagcgcgtgagaccacaaaaagaggacgacaaagtgtatggacgtcatacgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggtcagaaatgttttaatgcatgggtgaagcgacatgagaaatgtttgtcacataacgacgggattttgcagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-GGT--AAT-CG--GCGCAACGA--T--TTTTT---GCACGTTC-GAAATGAGC-AGTTAGGTTGA--CAT-TTCGCT-TT-AT-ATTT-TA-TT---TTA-CAAACATTGTATTT--T-AAATATAAT---T-ACCGGTACATCAATAAAAGCGA--TAT---GGTCT-AAC-AA-ACA------TGTCAT-TA--TAAA------A--TTAT---A-TAAAATTA--CGT--TAT-AAA-TAACACTTG--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTA-GAAAT------TTTCAAAAA----TGA-C-AACG--T-TGGA-TTATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CCCT-ATTCAAAGTAAAA-GGAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTTT-CGGA-CATT-TTTATACA-TA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATAC--TA---TGG-AAG-A-GGTG---------CGTG-T--TAT--AC-TGACAA-A----A---TGA-G-ACGAA--AAACTT---------AAAt
gi|9 : TGACTGAAATT-TG-CCGC----GAAGT-AT-CA--CAA--TTTA-C-ACA---TCTCTTTGCTCAGAAA---TGTTTT---TAATGC-ATGG-G-TGATGAGC---G-A-TA-TG-AGAAATGTTTGTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACA-TCATGA-AA-TTAC-GTTTTG-ACGTC--GTCAGAG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACTAAATGCA--TTAAAAAT-TT-CACAG-GGA-T-T--TCAA--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CG
blockSeqs : G . TC TC . AAA C TT T GAAA C C A TT T TA A A C G . A . CAAATTTAC GAG T . TTTCA C TT A . . AA TTT A C . . T . . T . C . . . . . C CGGTAC . TTA A C C CCATCC C . CAATTT . AGG . G AT TG A A . . TGCAC CCC . C . TTATGA AT A A . G . T TACTCAAGGTCGAC . AGGT G T T CT A . A G G AC . T A TTG G . G G . . . A . TAGTAATGT T ATG T . T T CTAGAAAAC GTT GC . C CAAGA G A AG A AGGGACGAA A TGT G CGT . T . A . GC A G C GAAGG . T A AAG G A G . GGCG G A GC . ACCACA TGT AACC . A . TG . T . . . T . . . C . . . T . AA . C . . . A . . . G . . . TA A T . . . . A A G . . . TT . C C GC . A TTCCGTTTT G .
blockSeqs : . . . T . . . T C . . . A C . . . A . G . . . ATTA AA . . . . . . . . . TT . . . . T . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . T . . T . . . . . T . . CA . . . A . . A . . . . . . T . . G C . . . . . G . . . . G T . A . . . A . . . C . A AG G . . . . . . T . . C AA . T . . . . . . . . . . . ACCACA . T . . . . . . . . . G . . . . . . . . . G . . . . . A . . . . . . . T . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . C . . . . C C . . . C . A . . . . AA . . . . . . . . . T . . . . G . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . C . . T . . . . . T . . AG . . . T . . A . . . . . . . . . G . . . . . . A . . . . G G . G . . . A . . . C . A CA G . . . . . . C . . C . . G . . . . . . . . . . . ACACA . T . . . . . . . . . C . . . . . . . . . G . . . . . A . . . . . . . T . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . A G . . . A . A . . . . AA . . . . . . . . . T . . . . T . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . T . . C . . . . . T . . AG . . . T . . A . . . . . . . . . T . . . . . . A . . . . G C . G . . . A . . . C . T CA G . . . . . . C . . C . . T . . . . . . . . . . . ACA . T . . . . . . . . . G . . . . . . . . . G . . . . . A . . . . . . . T . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . T C . . . C . G . . . . AA . . . . . . . . . G . . . . G . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . C . . T . . . . . T . . AG . . . A . . A . . . . . . . . . G . . . . . . G . . . . A T . G . . . A . . . G . . CA . . . . . . . . . . . . . . . . . . . . . . . . . AC . T . . . . . . . . . G . . . . . . . . . G . . . . . A . . . . . . . A . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . A T . . . C . G . . . . AA . . . . . . . . . T . . . . G . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . T . . . . . . . . G . . . T . . . . . . . . . . . . T . . . . . . G . . . . G C . T . . . A . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . G . . . C . G . . . . A . . . . . . . . . G . . . . C . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . T . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T . . . C . . . . . . A . . . . . . . . . . . . G . . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . .
blockSeqCons : ** T** A* C** ** AA**** ** ** ** *** ** *** ** ** ** ** ** T**** ** AG**** G* ** ** G* G*** A******* ** ** ** ** ACACA***** *** **** ** ** A* ** ** ** ** ** ****
originalCons : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-GT----TGTT-AATGGAT-GGTATAATCGTAA-TTTTC-ACA-AA--AAA-T--CT-TAAGGTTTTGGTC--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--T--TTTTTT--GCACGTTC-GAAAAGGGC-ACTTCGGTTGA--AAT-TNTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATGA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTA-GAAAT------TTTCAAAAA----CGG-C-AACG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CCCN-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-A-GGCG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAANTT---------AAAAATCG-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTA-C-ACA---TCTCTTAGTTCAGAAA---CGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTNTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-GAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
finalCons : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTTT--GCCT-GT----TGTT-AATGGAT-GGTATAATCGTAA-TTTTC-ACA-AA--AAA-TC--T-TAAGGTTTTGGTC--ACAAACAAA-T-A---------TGAAAA----CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--T--TTTTTT--GCACGTTC-GAAAAGGGC-ACTTCGGTTGA--AAT-TNTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATGA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTA-GAAAT------TTTCAAAAAT----GG-C-AACG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGAG----C-GAGGTTTGG-C-CCCN-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATTG-GTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-AG-GCG---------CGTGG---TAG--AC-TGACAA-AA-------AGA-G-ACGAA--AAANTT---------AAAAATCG-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTACACA-----TCTCTTAGTTCAGAAA---CGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTNTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-GAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
Alignments
lowQualScore : 11 1 11 222222222 11111 111 111111 111111 111111 11 11111 111 111111 1111 33333333333333 111111 1 111 1 111111111 11 222222222 1111 11111111 111111111 111 11 11 22222 1 111 1111 1111111111 111 1111 111 1111 1111 111111111
lowQualScore : 5 66 55 00 4 777 4 777 3 9999 4 0 4 11 77 4 66 4 666 4 1 66 4 4 777777777 999999 4 4 00000 4 55 4 55 66 66 222 4 4 55 4 1 4 4 4 4 4 777 4 66 4 777 4 222222 66 777 5 5 5 444444 5 66 444444 66 888 5 2 11 66 5 5 66 5 22222 000 5 4 5 666666 7777 5 5 77 5 5 5 33333333333333 5 111111 5 5 5 66 5 5 3 0 5 66 5 5 5 333 5 5 77 0 5 66 5 5 5 555555555 11 888 5 5 66 1 000000000 3333 66 5 5 33333333 5 5 66 1 777777777 1 999 4 000 5 33 5 5 99 00 6 6 1 55555 99 3 3 111 6 6 5 5 2222 5 5 77 77 7777777777 000 0000 5 5 5 77 000 5 5 5 5 1 6 6 6 5 2222 5 99 5 5 55 5 5 66 5 5 88 5 5 5 5 66 5 66 55 5 5 5 5 66 66 5 5 5 5 66 5 66 2222 5 5 66 5 5 666666666 4 5
lowQualScore : . .. .. .. . ... . ... . .... . . . .. .. . .. . ... . . .. . . ......... ...... . . ..... . .. . .. .. .. ... . . .. . . . . . . . ... . .. . ... . ...... .. ... . . . ...... . .. ...... .. ... . . .. .. . . .. . ..... ... . . . ...... .... . . .. . . . .............. . ...... . . . .. . . . . . .. . . . ... . . .. . . .. . . . ......... .. ... . . .. . ......... .... .. . . ........ . . .. . ......... . ... . ... . .. . . .. .. . . . ..... .. . . ... . . . . .... . . .. .. .......... ... .... . . . .. ... . . . . . . . . . .... . .. . . .. . . .. . . .. . . . . .. . .. .. . . . . .. .. . . . . .. . .. .... . . .. . . ......... . .
lowQualScore : 0 11 55 66 4 888 4 000 3 4444 4 9 4 99 11 4 11 4 222 4 9 11 4 4 222222222 111111 0 0 00000 0 55 0 55 99 99 666 0 0 55 0 0 0 0 0 0 0 000 0 11 4 888 4 888888 11 888 0 0 0 444444 0 99 444444 99 888 0 2 99 99 0 0 99 0 55555 000 7 0 7 444444 9999 7 7 99 7 7 0 66666666666666 7 777777 7 7 7 77 0 0 2 0 0 99 0 0 0 888 0 0 55 0 0 99 0 0 0 222222222 99 888 0 0 44 1 000000000 2222 99 0 0 44444444 0 0 11 0 888888888 6 111 3 000 7 66 7 7 22 33 7 7 0 88888 22 2 3 777 7 7 7 7 1111 7 7 99 99 3333333333 000 1111 7 7 7 99 000 7 7 7 7 0 7 7 7 7 1111 7 22 0 0 22 0 0 99 0 0 22 0 0 0 0 99 0 99 44 0 0 0 0 99 99 0 0 0 0 99 0 99 1111 7 7 99 0 0 000000000 4 0
consensus : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-GT----TGTT-AATGGAT-GGTATAATCGTAA-TTTTC-ACA-AA--AAA-T--CT-TAAGGTTTTGGTC--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--T--TTTTTT--GCACGTTC-GAAAAGGGC-ACTTCGGTTGA--AAT-TNTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATGA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTA-GAAAT------TTTCAAAAA----CGG-C-AACG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CCCN-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-A-GGCG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAANTT---------AAAAATCG-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTA-C-ACA---TCTCTTAGTTCAGAAA---CGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTNTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-GAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
Reference ( family-5171 ) : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-GT----TGTT-AATGGAT-GGTATAATCGTAA-TTTTC-ACA-AA--AAA-T--CT-TAAGGTTTTGGTC--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--T--TTTTTT--GCACGTTC-GAAAAGGGC-ACTTCGGTTGA--AAT-TNTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATGA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTA-GAAAT------TTTCAAAAA----TGG-C-AACG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CCCN-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-A-GGCG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAANTT---------AAAAATCG-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTA-C-ACA---TCTCTTAGTTCAGAAA---CGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTNTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-GAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
gi|1 : GTCCC-AGAAAAAAACGCGAACTTTTTAG--ATA-TTCAT--AAACTAGC---GTCACCAAACT-TTACTAAATTTGT-GCCTAAT----TGTT-AGTGGAT-GGTATAATCGTAATTTTTT-ACA-AA--AAA-TAATT-CAAGTTTTTGGTTTGACAAACAAA-TAA---------TGAGAACAA-CGGCATTTAAAAG-TGGCAAAA-----ATATC-AGT--AAT-CGAAGCGCACCGGATT--TTTTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGATCAATCTTTGCTGCTAAT-ATTTATA-TTAAGTTATCAAACATTATATTTAATAAAATATAATTTGT-AT------AACAATAAAAGTGTGGTAT---GGTCT-AAC--A-ACA------TATCAA-TATTTAAA------ATTTTAT---ATTAAAATGAC-CGT--CAT-AAA-TAACATTTTTCTATGGA-----CGTTATTATTA---CATAAC-TCTTCT-TTAGGAAAT------TCTCAAAAAATCCCGG-C-AACGTAT-CAGACTGA-GATG--------------CGGCGCCACCGAATTGTAATTCAATACTGTTTGGAAGA--C-GAGGTTAGG-C-CCCA-ATTCAAACAAAAA-GAAAGATTGTAAACGATTAGAA-CGTCA--CAAA-A-CA----GTGTCT-CGGATCATTGGGTATACA-CATTGACCCATAAAGGGTGTT-AAGGATGATTGGTAAT--G------GTAATTCTTTA---TGT-AAGCATGGCG----------GTGTG--TAG--ACTTGACAA-A----AAATAGA-G-ACGAA--AAAATT---------AAAAATAG-GGTGATGTAC---GTTCGATTATC-TAAAGA-TTTTGCA-TTCG-TTTCTGCATT------AAAAATCATATCTGTGAGGTAAA---GGGAGT-T-TACGTTACTGAAATT-CGTCCGC----GAAGT-AT-CA--CAACCTTTC-CGACATCTTCTTTTAGTTCAGAAA---CGTTGT---TTATGCTATGG-GATGA--AACACTG-AGTAGTGAAGAAATGTTTTTCTACATGAGTGGGAC--TATTTTG-AGAAAAAAACAATGGAATATGACGTTTAAACAGACA-TCACGATAG-TTACGGTTTGG-ACGTCGTGTCAGCGTTTGCTCCGGCAGCCTATTATTGTTAAGAGCTGCGTTAAAG-TGTGATAAAAATGCTTGATTTAGCAGCCAAAATGCAATTT-AAAAT-TT-CACAGCCGAGTATTCTCAGGAAAAA-TG-ATCATTTT-TTGT-GTAACCAAAGATAGATAA--AGAGATATTAGCT-AGAA-GTTTCACA--AAAAAGTATAT-AGAATG---------TTCGGCTTTTTCT-GGGACAACCCTACGTA
gi|10 : gGGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-AT----TGTT-AGTGGAT-GGTATAATCGTAA-TTTTC-ACC-AA--AAA-T--AT-CAAGGTTTTGGTT--ACAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCGA--T--TTTTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--AAT-TTTGCT-CT-AT-ATTT-TA-TT---GTA-CAAACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGTGT--TAT---GGTCT-AAC-AA-ACA------TGTAAA-TA--TAAA------A--TTAT---A-TTAAATGG--CGT--CAT-AAA-TAACATTTT--TAT-GA-----Ctt
gi|11 : gagACGGGATTTTG-AGAAGG----AAT-GAATA
gi|11 : ACA-TCACGA-A--CTAC-GTTTTG-ACGTC--GTCGGCG-TTGCGCCGACAG-CAATTA-TG-CAAGA-CTG-GTTAAAG-TCTGATAAAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-TGA-TAT--TCAG--AAAA-TG-ATCAATTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAG-GTTTAACA--AAAAA-TATAT-AAAATG---------TTCGCTTTTTatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaatgtacatcacgaactacgttttgacgtcgtcggcgttgcgccgacagcaattatgcaagactggttaaagtctgataaaaatgttatttacagacaaaatgcattaaaatttcacagtgatattcagaaaatgatcaatttgttgtgtaccaaataataatgatatactagaggtttaacaaaaaatatataaaatgttcgcttttt
gi|12 : acgggattttgagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaatgtGACGTT--AACTGACA-CCATGA-AG-TTAC-GTTTTG-ACGTC--GTCAGTG-TTGCGCCGGCAC-CTACTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAA-TGTT--ATTTA-CAGACTAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--T
gi|12 : GGTTGTCCC-AGAAAA--ACGCGAATATTAT-----TATTTGGT--ACACAA-CAAAATGATCA---T-TTTCTGAATAT-C-G-CT-GTGAAATTTT-AATGCAT-attcgcgtttttctgggacaacc
gi|12 : gacgttaactgacaccatgaagttacgttttgacgtcgtcagtgttgcgccggcacctactatgtaagactggttaaagtgtgataaaatgttatttacagactaa---------TTCGCGTTTTTCT-GGGACAACC
gi|13 : gacgttaactgacaccatgaagttacgttttgacgtcgtcagtgttgcgccggcacctactatgtaagactggttaaagtgtgataaaatgttatttacagactaaatgcattaaaatttcacagcgatattcagaaaatgatcattttgttgtgtaccaaataataataGGTTGTCCC-AGAAAA--ACGCGAACTTGTTAG--ATATTTCGT--AAACTA-C---GTCACCAAACT-TTACTAAATTT-T-GCCT-AT----TGTT-AATGGAT-GATA-AATCATAA-TTTTC-ACA-AA--AAAAT--AT-TAAAGCTTTGGTC--ACAAACAAA-T-A---------C-----------------AAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGC
gi|14 : cgagTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--CAT-TTCGCT-CT-AT-ATAT-TA-TT---TTA-CAAACATTGTATTT--C-AAATATAAT---T-AT------ATCAATAAAAGCGG--TAT---G
gi|15 : ATAGTAC-TTTTG-ACA-TA--ACA-T--CT-TAAAATTTTGGTC--ACAAACAAA-T-AATTA-----TGAA---AA-CGGCATCTAAAAG-GAGC-TAA-----ATATC-AGT--AAT-CG--
gi|16 : gTGACAGCAAAAC-TATCT-AAAAAG---------TTCGCGTCTTTCTGGGGACAACCCT-CGTAtaga
gi|17 : aTTG--GCACGTTC-GAAAAGGGC-ACTTTGGTTAA--AAT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-tctcacataaattt
gi|18 : GGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTC
gi|19 : atacgagG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTA
gi|2 : aGGTTGTCCC-AGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---ATCACCAAACT-TTACTAAATTT-T-GCCA-AT----TGTT-AGTGGAT-GGTATAATCGTAA-TTTTC-ACA-AG--AAA-T--AT-TAAGATTTTGGTC--ATAAACAAA-T-A---------TGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GCGCACCAA--T--TTTTTT--GCACGTTC-GAAAAGAGC-ACTTCGGTTGA--AAT-TTTGCT-CT-TT-ATTT-TA-TT---GTA-CTGACATTATATTT--T-AAATATAAT---T-AT------ATCAATAAAAGCGT--TAT---GGTCT-AAC-AA-ACA------TGTCAA-TA--TAAA------A--TTAT---A-TAAAATGA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTAA-GAAAT------GTTCAAAAA----TGG-C-AACG--T-TGGA-TGATAATG--------------CGGTG-CACCGAATTGTAATTCAATACTGCGAGGC--A--C-GAGGATTGG-C-CCCA-ATTCAAACTAAAA-GAAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTCT-CGGA-CATT-GGTATACA-CA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGA-AAG-A-TGTG---------CGTG-A--TAG--AC-TGACAA-A----A---AGA-G-ACGAA--AAAAATAGGGACGAAAAAAATAG-GGTGATGGAC---G-TCA--TA-C-T--AGA-TTTCGCA-TTTT-TTCCTGCATT-----AAAAAATC--GTTTGTGAGG-AAA---GAGATT-T-TACGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTT----ACA---TCTCTTAGTTTAGAAA---CATTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTTTC-ACAT-ATT-GGACGGTATTTTG-AGAAAG----AAT-GAATATGACGTT--AACAGACA-TCACAA-AG-CTCC-GTTTTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGCT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TT-CACAG-CGA-TAT--TCAG--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTCACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CGTAt
gi|20 : CGCGTTTTTCT-GGGACAACCCT-CGTA
gi|3 : ggtaGGGTGTCCAGAGAAAA--ACGCGAACTTTTTAG--ATATTTCAT--AAACTA-C---GTCACCAAACT-TTCCTAAATTT-T-GCCT-GT----TGTT-AATGAAT-GATATAATCGTAT-TTTTT-A-A-CA--AAG-T--CT-TAAGGTTT-GGTG--ACAAA--AA-T-A---------TGAA---AA-CGGCATTTAAAAG--TGC-AAA-----ATATC-AAT--AAT-TG--GCGCACCGA--T--TTTTTTTTGCACGTTC-TAAAAGGGC-ACTTCGGTTAA--AGT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACGTTATATTT--T-AAATA--AT---T-AT-------TCAATAAAACCGT--TAT---GGTCT-AAC-AA-ACA------TCTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT--CAT-AAA-TAACATTTT--TAT-GA-----CGTTATACGTA---CA-GACACCTTCTGTTA-GAAAT------TTTCAAAAC----TGG-CAAACG--T-CGGA-TGATAA-G--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGTTTTGG-CTCCCT-ATTCAAACTAAAA-TAAAGA-TGG-AACGA-TAGAAGCGACT--C-AA-A-CA---T-TGTCT-CGGA-CATT-GGTAT--A-CA-TGA---ACAAAAAGT-TT-AAGGATGGTTGG-AGT--A------GT-ATCC--TA---TGG-AAG-G-GGTG---------CGTG-G--TAG--AC-TGACAA-A----A---AGA-GAACGAA--AAACTT---------AAAAATCA-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTCT-TTCCTGCATT-----AAAAAATC--A-TTGTGAGG-AAA---GAGATT-T-CATGTGACTGAAATT-CG-CCGC----GAAGT-AT-CA--CAA--TTTACC-ACA---TCTCTTAGTTCAGAAA---TGTTTT---TAATGC-ATGG-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTGTC-ACAT-AGT-GGACGGTA-TTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACA-TCACGA-AG-TTAC-G-ATTG-ACGTC--GTCAGCG-TTGCGCCGGCAG-CTATT--TG-TATGA-CTG-GTTAAAG-TGTGATAAAAATGTT--A-TTA-CAGACAAGATATA--T---AAATATT-CACAG-CGA-TAT--TCAG--AAAA-TGAATCATTTTTGTGTGGT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAA-A--AAAAA-TATAT-GAAATGTTCCGTTTTTTCGCGTTTTTCT-GGGACAACCCT-CGTA
gi|4 : TTGTCCC-AGAAAA---CGCGAACTTTTTAG--ATATTTCATT-AAACTA-C---GTCACCAAACT-TTTCAAAATTT---GCCTTGT----TGTT-AATGAAT-GAT-TAATCGTA--TTTTG-TCA-AA--AAA-T--CT-TAAGGTTTTGGTG--ACAAACAAAAT-A---------TGAA---A--CGGAATTTAAAAG-GTGC-AAA------TATC-AGT--AATATG--GCGCACCGA--T--TTTT----GCACGTTC-TAAAATGGC-ACTTCGGTTAA--AGT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACGTTATATTT--T-AAATATAAT---T-AT------ATGAA-AAAAGCGT--TAT---GTTCT-AACCAA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT---AT-AAA-TAACATTTT---AT-GA-----CGTTATACGTA---CG-AACACTTTT-GTTA-GAAAT------TTTCAAAAAA---TGG-C-AGCG--T-CGGA-TGATAATG--------------CGGCG-CACCGAATTGTAAT-CAATATTGTGTGG---G--C--AGGTTTGG-C-CCCCTATTCAAACTAAAA-TAAAGA-TGGAAACGA-TAGAA-CGACT--C-AA-A-CA---TGTTTCT-CGGA-CATT-GGTATACAGCA-TGA--CACAAAAAGT-TT-AAGGATGGTTGG-AGT--A------GTAATCC--TA---TGG-AAG-G-GGGG---------CG---G--TGG--AC-TGAC--------------------GAA--AAACTT---------AAAAATCA-GGTGATGGAC---G-TCA--TA-C-T--GGA-CTTTGCA-TTTC-TTCCTGCATT-----AAAAAATC--ATTTGTGAGG-AAA---GAGATT-T-CACGTGACTGAAATTGCG-CCGC----GAAGT-AT-CAGCCAA--TTTACC-ACA---TCTCTTAGTTCAGAAA---TGTTTT---TAATGC-AT-G-G-TGA--AGC---G-A-TA-TG-AGAAATGTTTCAC-ACAT-AGT-GGACGGCATTTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACATTCACGA-AG-TTAC--TTTTA-ACATC--GTCAGCG-TTGCGCCGG-AG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGAT-AAAATGTT--ATTTA-CAGACAAAATGCA--TA-AATAT-TT-CACAG-CGA-TAT--TCAG---AAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CTCAGAA-GTTTAACA--AAAAT-TATTT-G-AATG---------TTCGCGTTTTTCT-GGGACAACCCT-t
gi|5 : gggtAAAA--GCGCAAACTTTTCGATCATATTTCATTCACACTA-C---GTCACCAAACTCTTACCAAATTT-TTGCCTCGT----TGTTCGATACATCAGTATAATC-TAA-TTTTTTACA-AATAAAA-T--CTCTAAGGTTTTGGTC--ACAAGCACA-T-ACAAATTTACTGAA---GAGCGGCATTTTAAGGTGTGC-AAATTTCAATATCCAGTTTAAT--G--GCGCACCGA--T--TTTTTTT-GCACGTTCAGAAAAGGGCCACTTCGGTTAA--AAT-GCTGCT-CT-TTTATTT-TACTT---TTA-CAAACATTATA-TT--T-AAATAGAAT---TCAT------ATCAATAAAAGCAG--TATTTAGGTCTAAAC-AACACACCATCCCGTCAGCTA--TAGACAATTTA--TTATAGGA-TATAATTAATCGCTGCATAAAA-TACCATTGT--TTT-GATGCACCGTTATACGTACCCCC-AACACTCTCCGTCT-CAAATTTATGATTTAAAAAA----CGGAC-AACG--CGCGG---GA-AGTGTACTCAAGGTCGACTGGCG-CACCGAATTGTAATTCAATACTGTGTTGA--GGTCGGATGTTTGGTC-TCCT-ATTCAAAAT-AAA-GAAAGA-TGG-AACAA-TAGAA-CGACAACC-AATA-CATTGTGTGTCTGCGGA-CATT--GTATACACCA-TGA--CACAAAAATT-TA-AAGTATGTTTGG-GGTTAGTAATGTGTAATTC--TAATGTGATAAG-A--GCGCTAGAAAACCGTG-GTTTAGGCAC-TGACAA-ACAAGA---AGA-G-ACGAAAGAAGCTT---------AA
gi|5 : taGAA--AAAGTT---------G----TTGTGGT--TGGACCGTG-TCA--TG-TAT--AGAGCTTGGCAATTCT-TT---GCATTGAAGGAAAAAATC--AGT-GTGAGG-AAGAAGGAGGTTGTATACGTGACTGCAATT-TG-GTGCGGCGGAAGTGATACA--CAA--cgaatacgtcttgggaaaaactctatatatggaaaaagttgttgtggttggaccgtgtcatgtatagagcttggcaattctttgcattgaaggaaaaaatcagtgtgaggaagaaggaggttgtatacgtgactgcaatttggtgcggcggaagtgatacacaa
gi|6 : taaaaagcgcaaacttttcgatcatatttcattcacactacgtcaccaaactcttaccaaatttttgcctcgttgttcgatacatcagtataatctaattttttacaaataaaatctctaaggttttggtcacaagcacatacaaatttactgaagagcggcattttaaggtgtgcaaatttcaatatccagtttaatggcgcaccgattttttttgcacgttcagaaaagggccacttcggttaaaatgctgctcttttattttacttttacaaacattatatttaaatagaattcatatcaataaaagcagtatttaggtctaaacaacacaccatcccgtcagctatagacaatttattataggatataattaatcgctgcataaaataccattgttttgatgcaccgttatacgtacccccaacactctccgtctcaaatttatgatttaaaaaacggacaacgcgcgggaagtgtactcaaggtcgactggcgcaccgaattgtaattcaatactgtgttgaggtcggatgtttggtctcctattcaaaataaagaaagatggaacaatagaacgacaaccaatacattgtgtgtctgcggacattgtatacaccatgacacaaaaatttaaagtatgtttggggttagtaatgtgtaattctaatgtgataagagcgctagaaaaccgtggtttaggcactgacaaacaagaagagacgaaagaagcttaacgaatacgtcttgggaaaaactctatatatgTTAG--ATATTTCAT--AACTTA-C---GTCACCAA-CT-TTACTAG-TTT-T-GCCT-GT----TGTT-AATGAAT-GACATAATCGTA---TTTT-ACATAA--AAA-T--CT-TCAG-TTTTGGTC--ACAAACAAA-T-A---------TGAA---A--CGGCATTTAAAAG-GTGC-AAA-----ATATC-AGT--AAT-CG--GC----CGA--CAATTGTTG--GCACGTTC-GAAAAGGGC-ACTTTGGTTAA--AAT-TGTGCT-CT-AT-ATTT-TA-TT---TTA-CAAACATTATATTT--T-AA-TATA-T---T-AT------ATTA-TAAAAGCGT--T-T---GGT-T-AAC-AA-ACA------TGTCAG-TA--TAAA------A--TTAT---A-TAAAATAA--CGT--CAT-AAAATAAT-TTTT--TAT-GA-----CGTTATACGTA---CA-AACACCTTCTGTTT-AGAAT------TTTCAAAAA----TG--C-AACG--T-TGGA-TGATAATG--------------CGGAG-C--CGAATT-TAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CC-A-ATTCCAACTAAAA-AAAA---TGGAAACAAGTAGAA-CGACA--C-AA-A-CAT--TGTGTCT-CGGA--ATA-TGTATACA-C--TGA--CACAAAAAGT-TTAAAGGATGGTTGG-AGT--G------GTAATCCT-TA---TGG-AAG-A-GGTG---------CGTG-G--TAG--AC-TGACAACA----A---AGA-G-ACGAA--AAAGTT---------AAATATCA-GGTGATGGAC---G-TCAT-TA-C-T--GGA--TTTGCA-TTCTGTTCCTGCATCAA---AAAAAATC--ATTTGTGAGGAAAA---GAGGTT-T-TACGTGA-TGAAAAT-CG-CAGC----GAAGT-AT-CA--CAA--TTTA-C-----------------CAGAAATGTCGTTTTAACCAATGC-ATGGAG-TGA--AGC---ATA-TG-TG-AGAAATGGTT
gi|7 : AAACTAAAAAGAGAGA-TTGAAACGA-TAGAA-CGACA--C-AA-AACA---TGTGTCT-CAGA-CATT-GG-GTA----A-TG---CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATCC--TA---TGG-AAG-A-AGCG---------CGTG-----AG--AC-C-ACAA-A----A---AGAGG-ACGAC--AAAGT--------------------GT-ATGGAC---G-TCA--TA-C-
gi|7 : TCAGAAA---TGTTTT----AATGC-ATGG-G-TGA--AGC---G-A-CA-TG-AGAAATGTTTGTC-ACAT-AAC--GACGGGATTTTGCAGAAGG----AAT-GAATAgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggtcagaaatgttttaatgcatgggtgaagcgacatgagaaatgtttgtcacataacgacgggattttgcagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtacatcacgaaaactacgttttgcacgtcgtcggcgttgcgcgacagcaatttgcaagactggttaaaggtctgaaataaatgttatttacagacaaaatgcattaaaattttcacagtgatattcagaaaaatgatcaatttgttgtgtaccaaataataatttgatatactagagcgtttacaaaaaaatatataaaaatgttcgcttttttt
gi|7 : aaactaaaaagagagattgaaacgatagaacgacacaaaacatgtgtctcagacattgggtaatgcacaaaaggtttaaggatggttggagtggtaatcctatggaagaagcgcgtgagaccacaaaaagaggacgacaaagtgtatggacgtcatacgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggACA-TCACGA-AAACTAC-GTTTTGCACGTC--GTCGGCG-TTGCGC-GACAG-CAATT--TG-CAAGA-CTG-GTTAAAGGTCTGAAATAAATGTT--ATTTA-CAGACAAAATGCA--TT-AAAAT-TTTCACAG-TGA-TAT--TCAG--AAAAATG-ATCAATTTGTTGT-GT-ACCAA--ATA-ATAATTTGATATA----CT-AGAGCGTTTACAA--AAAAA-TATATAAAAATG---------TTCGCTTTTTTatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtacatcacgaaaactacgttttgcacgtcgtcggcgttgcgcgacagcaatttgcaagactggttaaaggtctgaaataaatgttatttacagacaaaatgcattaaaattttcacagtgatattcagaaaaatgatcaatttgttgtgtaccaaataataatttgatatactagagcgtttacaaaaaaatatataaaaatgttcgcttttttt
gi|8 : aaactaaaaagagagattgaaacgatagaacgacacaaaacatgtgtctcagacattgggtaatgcacaaaaggtttaaggatggttggagtggtaatcctatggaagaagcgcgtgagaccacaaaaagaggacgacaaagtgtatggacgtcatacgtgaagcaccgccgtttgacagtacgtgaataatgtgggtgacatccttggatatggaaatctgttcagcaggattctgttctgatctctcataactaaagtatggtcagaaatgttttaatgcatgggtgaagcgacatgagaaatgtttgtcacataacgacgggattttgcagaaggaatgaataatatacatgtatgtttattcaccaatcaagggccctcggggggcatgtacaaatgtGAA---AA-CGGCATTTAAAAG-GTGC-AAA-----ATATC-GGT--AAT-CG--GCGCAACGA--T--TTTTT---GCACGTTC-GAAATGAGC-AGTTAGGTTGA--CAT-TTCGCT-TT-AT-ATTT-TA-TT---TTA-CAAACATTGTATTT--T-AAATATAAT---T-ACCGGTACATCAATAAAAGCGA--TAT---GGTCT-AAC-AA-ACA------TGTCAT-TA--TAAA------A--TTAT---A-TAAAATTA--CGT--TAT-AAA-TAACACTTG--TAT-GA-----CGTTATACGTA---CA-AACACCTTCCGTTA-GAAAT------TTTCAAAAA----TGA-C-AACG--T-TGGA-TTATAATG--------------CGGCG-CACCGAATTGTAATTCAATACTGTGTGGA--G--C-GAGGTTTGG-C-CCCT-ATTCAAAGTAAAA-GGAAGA-TGGAAACGA-TAGAA-CGACA--C-AA-A-CA---TGTGTTT-CGGA-CATT-TTTATACA-TA-TGA--CACAAAAGGT-TT-AAGGATGGTTGG-AGT--G------GTAATAC--TA---TGG-AAG-A-GGTG---------CGTG-T--TAT--AC-TGACAA-A----A---TGA-G-ACGAA--AAACTT---------AAAt
gi|9 : TGACTGAAATT-TG-CCGC----GAAGT-AT-CA--CAA--TTTA-C-ACA---TCTCTTTGCTCAGAAA---TGTTTT---TAATGC-ATGG-G-TGATGAGC---G-A-TA-TG-AGAAATGTTTGTC-ACAT-AGT-GGACGGTATTTTG-AGAAGG----AAT-AAATATGACGTT--AACAGACA-TCATGA-AA-TTAC-GTTTTG-ACGTC--GTCAGAG-TTGCGCCGGCAG-CTATTA-TG-TAAGA-CTG-GTTAAAG-TGTGATAAAAATGTT--ATTTA-CAGACTAAATGCA--TTAAAAAT-TT-CACAG-GGA-T-T--TCAA--AAAA-TG-ATCATTTTGTTGT-GT-ACCAA--ATA-ATAA--TGATATA----CT-AGAA-GTTTAACA--AAAAA-TATAT-GAAATG---------TTCGCGTTTTTCT-GGGACAACCCT-CG