lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 55555555555555555555555555555555555555555555555555555555 2222 666666666666666666666666666666666666666666666666666666666666 22 333333333333333 1111111111111 2222222222 33333333333333333 3333333333 55555555555555 111111 6666666666666666666666666666666666666666666666666666666 2 11111111111 111 1 7777777777 11111 22222222222222 11 11
lowQualScore : 0 5 66 3 99999999999999999999999999999999999999999999999999999999 777 777 4 2222 4 4 4 4 777777777777777777777777777777777777777777777777777777777777 4 88 777 6 000000000000000 4 4 7777777777777 0 4 5555555555 11111111111111111 4 4 4 4 99 0 4 1111111111 99 4 2 3 88888888888888 0 555555 3 3 5555555555555555555555555555555555555555555555555555555 3 7 55 3 55 666 3 1 8 4 00000000000 888 5 111 0 2 6666666666 4 66666 66 66 4 6 66 4 4 4 4 4 8 4 8 66666666666666 4 4 4 8888 88 0 5 5 5 5 11 5 00
lowQualScore : . . .. . ........................................................ ... ... . .... . . . . ............................................................ . .. ... . ............... . . ............. . . .......... ................. . . . . .. . . .......... .. . . . .............. . ...... . . ....................................................... . . .. . .. ... . . . . ........... ... . ... . . .......... . ..... .. .. . . .. . . . . . . . . .............. . . . .... .. . . . . . .. . ..
lowQualScore : 1 0 99 2 33333333333333333333333333333333333333333333333333333333 000 000 0 5555 0 0 0 0 111111111111111111111111111111111111111111111111111111111111 0 22 000 6 000000000000000 0 4 0000000000000 1 4 6666666666 11111111111111111 4 0 0 0 55 7 0 3333333333 77 0 5 6 66666666666666 9 999999 6 6 6666666666666666666666666666666666666666666666666666666 6 3 00 6 00 444 6 8 0 0 33333333333 999 0 000 0 2 0000000000 4 77777 11 11 4 8 11 4 4 4 4 4 9 4 9 11111111111111 4 4 4 5555 22 2 0 0 0 0 00 7 88
consensus : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGTCG-GC----A------CATCA-T-------CGA-GCA--------C----------TAT---G---C-TA----ATGG-GTT-ATG-ACC-T-------AAA-A-------A---------AAA----AC--------------------TGTTT-GCAGAATGCGCG---GGGAAACTTCTTATCGATCG-ATTGCAT-GAC-TACTTTC-----GGT-----TTCG-ATA----------TAGTTTC-----------------TTCGAAAA-TG-T-AAAT-TGG--CGAAGTT-AACGTCCGA--GAAATA-TGC-AGATT-GC---GATA-----C-TACATTG----C-TTTAGCAACTA-GA-TTTTA----------T--------------TT----ATT----C-G--------------AAATGG-C-GATTTT--GT-AT--GAA---AC-CACGAT-C-TCA-TA-TTCATA-TAAAAG-T-T-AT-C-TT-AGTTTCATTCATAC---T-CGCCACA-ACTGC-G---TGG--GAAAA--T-TCTCA--TT-CA-C-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
Reference ( gi|6 ) : TAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGTCG-------A------CAT-GGT-------CGA-GCA--------C----------TAT---G---C-TA----ATGG-GTT-ATG-ACC-T-------GAA-A-------A---------AAA----CC--------------------TATTT-GCAGACAGCGCG---GGGAAACTTCTTATTGATCG-GTTGCAT-GAC-TACTTTC-----AGT-----TTCG-ATA----------TAGTTTC-----------------TTCGAAAA-TG-T-AAAT-TGG--CGAAGTT-AATGTCCGA--GAAATA-TGC-AGATT-GC---AATA-----C-TACATTG----T-TTTAGCAACTA-GA-TTTTA----------T--------------TC----ATT----C-G--------------AAATGG-C-GATTTT--GT-AT--GAA---AC-CA-GAT-C-TCA-TA-TTCATA-TAAAAG-T-T-AT-C-TT-AGTTTCATTCATACTG-TACACCACA-ACTGC-A---TGG--GAAAA--T-TTTCA--TT-CA-C-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTC-GTTAT-TCTGCC-TTTAAAA
gi|3 : AAATCAAAGAGC-AGAAGGG--TTACAAAGGCGTTG-------AACACATCAT-ATTA------CAT-GCA-------------------TATAACG---C-TA----ATGG--TT-ATG-ACC-T-------AAA-A-------A---------AA------C--------------------TATTT-GGAGAATGCGCG---GGGAAACTTCTTATCGATCGTATTGCATGGAC-TATTTTC-----GGTTACTATTTA-ATA----------TAGTTTC-----------------TTCGGAAA-TG-T-AAAT-TGG--TGAAGTTCAACATCCGA--GAAATA-TGC-AGA-T-GA---GAT------T-TACA--A----T-T------ACTA-GA-TTTTA----------T--------------TT----ATC----C-AATCTGTGTATTC--AAATGG---AATTTT--GTAAT--GGA---AC-AT-AAT-C-TCA-TA--TCATA-TAAAAG-T-T-AT-CTTT-AGTTTCAC---------TACGCAACATCCTGC-G---TTG--GGACA--T-TCTCA--TT-CA-C-ACT-CTA-GATTCA-TCTCA-CGATATGTATGAGCAATACA-TGT-GTG-TAACT----CTTG-ATA-TTAGAAATAGT-AAC-GTCAG-T-GTG-GATTT-GTTATATCTGCT-
gi|2 : AAATCAACGGCCCAGAAGGG--CCACAA-GGCGTCG-------AGCA---CATCAATATTTAAACGATGTATATATATCC----------TAT---G---C-CA----ATGG-GTTTATG-ACC----------AACA-------A---------AAA----CC--------------------TATTTTGCAGAATGCACG---GG-AAAC-----ATTG-------TA-AT-GAC--ACTTTTT----GGT-----TTCG-CTAAT--------TAGTTTC-----------------TTTGAAAA-TG-T-AAATATGG--CAAAGTT-AACATCAGAA-GAAATAATGCTAGATTTGCTC-AA-A-----C-TACATTG----T-TTTAGCAACTA-GAATTTTAATTTATCAAAT--------------TCTGTTATT----T-G--------------ACATGG-CCGATTTTTGGT-AT--AAA---CCACA-GATAC-TCA-TA-TTTATACTAAAAGGT-T-AT-C-T--AATTT-ATCCATGC--------CAAA-ACTGCCG---TGG--GAAAA--T-TCTCA--TT-CA-CAACT-CTACGATGAATTC-CGTCGA--------------ATATTGTGATG-GAACT----CTTGAATACTTAGAAACAGTGAAC-ATCAG-CAGTG-AATTT-G
gi|5 : aAAATCAAAGGCC-AGAAGGC--TCCCAA-GGCGC---------A------C-T---C-------CGA-GCA--------CGTATATGAA-TAT---G---C-TATAGAATGGAGTT-ATG-ACCGT-------GAA-A-------ATAAAAAAAAAAA----AC--------------------TGTTT-GCAGAATACGCG---GCCAA----CTT-----------TGCAT-TAC-TACTT-C-----AGT-----TTCGTACAGGTTGTTTACTGGTTTCGGTGCTTAAATTTTGGATTCGAAAAATG-T-AAAT-TGGG-CGAA-TT-A-TG-CAGATTGCAAT--TAC-A--TT-GCCA-GATAATCT-C-TGCATTGCGCGT-GTTAGCAACTA-GA-TTTTA----------T--------------AT----ATT----TTA--------------AAATGG-CCGATTTT--GT-ATTTGAA---AC-AC-GAT-CCTCA--A-TTTTGG-CCAA-----T-CT-T-TT-AGTTTCATTCATG-------GCCACA-ACTGC-T---TGG--GAAAA--T-TT-CA--TT-CAAC-ACT-CTA-GAT-CA-TC-AG-CGA--------------ATA-TGA-ATG-TAACT----CTTGAAT---------------AC-ATCAA-CAGTG-GATTT-GTTTT-TCTGC
gi|1 : aAATCAA-GGCC-AGAAGGGTTCCACAAAG-CGTCGCGCAAGCA------CATCAAT---------A-ATA--------CATGTATA---TAT---GAATC-TA-----TGG-GTT-ATGGACC-T-------TAA-T-------A---------TAA----AC--------------------T-TTT-GCAGA--GTGCGTTTGGGAACTTTCTTATCGATCG-ATTGCAT-GACTTACTTTCGAATTAAT-----TTCG-ATA----------TAGTTTT-----------------TTC-AAAA-CGTT-AAAT-TGGCCCGAAGTT-AACAT-CGA--AAAAC--TGT-AGA-T-GC---AAT--------TACATCGC---T-TTTAGCAACTA-AA-TTTTAC---------T--------------TT----ATC----T-G--------------A
gi|7 : AATCAAAAGCC-AGAAGGG--TCACATAGGCATC------------------------------GA-GGA--------C-----------AT---G---TATA----AT----CT-ATG---C-T-------AA-----------------------------------------------------T-G--GGTTGCGCG---GAGAAACTTCC----GAGCG-ATTGCAT-GAT-TATTTTC-----GGT-----TTAG-ATA----------TAGTTTC-----------------TTCGAAAG-TG-T-AAAT-T--------GTT-AACATCCGC--GAAATA-TGC-AGATT-GC---AAT--------TACAATG----C-CTTAGCAACTA-GA-TTTTA----------TTTATCTGATTCTGGTT----ATT----C-A--------------AAATGG-C-AATTTT--GT-AT--GAA---AC-CA-ttctggttttcgaaaatnnnnnnnnnnnnnnnnnnnnnnnnnagcgattttgtatgaaaccacaatctcataattcatataaaagttatctttagtttcattcatatgccacaactgcatggaaaaattctctttcacactctagattcatccgcgaatatgtatgtaactattgaatattggatacaataacatcagcagtggatttgttattc
gi|8 : AATCAAAGGAC-AGAAGGG--CCACAAAGGCGTAG-------A---------------------GC-ACA--------C----------TA--------C-T------TGG-GTT-ATG-ACC-T-------AAA-ATT-----A---------AAA----------------------------------AAAAA-----------AAA----TTATCGATTG-ATTGCAT-GAC-TACTTTC-----GGT-----TTCG-ATA----------TGGTTTC-----------------TTCGAAAA-TA-G-AAAT-TGG--CATAGT-----------------TA-TGT-AGATT-GC---------------------------CTTAGCAACTA-GA-TTTTA----------T--------------TT----ATC----C-GATTCAGGTTATTCAAAATGG-C-GATTTT--GT-AT--GAA---AC-CACGAT-C-TCA-TA-TTCAcaatc
gi|17 : gAATCAAAGGCC-TGAAGAG--CCATGAAGGCGTCGTGC----A------CATCGGT-------
gi|15 : TCAAAGGCC-AGAAGGG--CCACAAAGGCATCGAGC----A------CAT-ATA-------TGA--TA-------------------TAT---G---C-TATAG-ATTG-GTT-ATG-ACC-TAAAATTAAAA-A-------A---------AAA----AC--------------------TATTT-GCAGAATACGCG---GACCAACTTCTTATCGATTG-ANGGCAT-gtatacatttta
gi|4 : T-------CGA-GCA--------CATATATGATATAT---G---C-TATAA-ATGG-GTT-ATG-ACC-T-------AAA-ATAAAAAAA---------AAA----AC--------------------TGTTT-GCAGAATACGCG---GGCCAACTT--------------TGCAT-TAC-TACTTTC-----AGT-----TTCG-ATA----------CAGTTTC-----------------TTCGAAAA-TG-T-AAAT-TGG--CGAAGTT-A-TG-CAGATTGCAAT--TAC-A--TT-GCCCAGATATGTCTC-TGCATTG----C-CTTAGCAACTA-GA-TTTTA----------T--------------AT----ATT----T-A--------------AAATGG-C-GATTTT--GT-AT--GAA---AC-CACGAT-C-TCA-T
gi|9 : ggca--------C----------TAT---G---C-TA----ATGG-GTT-ATG-ACC-T-------AAA-A-------A---------AAA----CCAAAAAACAAAAAAAAAACACTATTT-GCAGAATGCGCG---TGGAAACTTCTTATAGATCG-ATTGCAT-GAC-TACTTTC-----GGT-----TTCG-ATA----------TAGTTTC-----------------TTCGAAAA-TG-TAAAAT-TAG--C------------------GAAATA-TGT-AGATT-GC---AAT--------TACATTG----C-TTTAGCAACTA-GA-TTTTA----------T--------------TT----ATtgatttaggccnaatggcgattttgtatgaaaccacgatctcaattaggccaatctttagtttcattcatgcgccacaactgcttgggaaaattctcattcacactctagattcatcagcgaatatgaatgtaactcttgaatacatcaacagtggatttgtttttctgcttttaaaatatcaattaaattcaa
gi|12 : gcatcgagcacatcatattacatgtatatatgat--------C----------TAT---G---C-TA----ATGG-TTT-TTG-ACC-T-------GAA-A-------A---------AAAAAACCC--------------------TGTTT-GCAGAAAGCACG---GGAAAAC--------GATCG-GTTT--T-GA------TTC-----A--------T---ATA----------TAATTCC-----------------TTCGAAAA-TG-T-AAAT-TGA--AGAAGTT-AACGTTCGA--GAAATA-TGC-AGATT-c
gi|11 : aggcgtcaagcacatcatattacatgtataatgat-T-AAAT-TGG--CGAATTT-AACATCCGA--GAAATA-TAT-ATATT-GT---AATAA----CATAGATTG----TATTTATAAATCC-AA-TTCTG----------G--------------TT----ATT----T-G--------------AAATGG-C-GATTTT--GT-AT--GAA---AC-CACGAT-C-TCA-TA-TT-------AAAG-T-T-AT-C-TTTAGTTTCATACATAC------GCCAC-----------------GAAAA--T-TCTCA--TT-CA-C-AAT-CTA-GATTCA-TC-TG-TGA--------------ATA-TGT-ATA-TAACT----CTT
gi|18 : TT-GC---AAT--------TACATCA----C-TTTAGCAACTA-GA-TTTTA----------T--------------TT----ATC----T-G--------------Aattaa
gi|4 : AACCACGA-TCTCA----------T--------------TG----ATTTAGGC-C--------------NAATGG-C-GATTTT--GT-AT--GAA---AC-CACGAT-C-TCA--A-TT--------AGG-C-CAAT-CTTT-AGTTTCATTCA------TGCGCCACA-ACTGC-T---TGG--GAAAA--T-TCTCA--TT-CA-C-ACT-CTA-GATTCA-TC-AG-CGA--------------ATA-TGA-ATG-TAACT----CTTGAAT---------------AC-ATCAA-CAGTG-GATTT-GTTTT-TCTGCT-TTTAAAA
gi|10 : ggcatcgagcacatatatgatatatgctataaatgggttatgacctaaaataaaaaaaaaaactgtttgcagaatacgcgggccaactttgcattactactttcagtttcgatacagtttcttcgaaaatgtaaattggcgaagttatgcagattgcaattacattgcccagatatgtctctgcattgccttagcaactagattttatatatttaaaatggcgattttgtatga----ATT----C-G--------------AAATGGGC-GATTTT--G--AT--GAACCAAC-GA-AAC-C-TCAATAATTCATA-TAAAAA-TAT-GC-T-TT-AGTTTCATTCA-ACCAACGCGCAACA-ACTGT-ACATTGG--GAGAA--TGTCTTA--TTGCA-C-ACTTCTA-GATTCAATC-CGGCAA--------------ATA-TGT-ATGGTCACT----CT-GAATA-TTAGAAACAGT-AACAATCAGACA-TGAGATTTGGTTAT-T-TGCTGTTTCAAAtatcaattaaattcaa
gi|14 : --------------AAATGG-C-GATTTT--GT-AT--GAA---AC-CACGATGC----------CATA-TAAAAG-G-T-ATAT-TT-AGTTTCATTCATA-TG-T----CACA-ACTGT-G---TAA--GAAAC--T-TATCA--TC-TA-C-ACT-CTA-CATTTA-TC-CG-CAT--------------ATA-TGT-ATG-TAACT----CTtatcaattaaattcaa
gi|1 : aG-C-GATTTT--GT-AT--GAA---AC-CACAAT-C-TCA-TAATTCATA-TAAAAG-T-T-AT-C-TTTAGTTTCATTCATA-TG-----CCACA-ACTGC-A---TGG--AAAAA--T-TCTCT--TT-CA-C-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----ATTGAATA-TTGGATACAAT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCagtt
gi|13 : aatcaaggccagaagggttccacaaagcgtcgcgcaagcacatcaataatacatgtatatatgaatctatgggttatggaccttaatataaacttttgcagagtgcgtttgggaactttcttatcgatcgattgcatgacttactttcgaattaatttcgatatagttttttcaaaacgttaaattggcccgaagttaacatcgaaaaactgtagatgcaattacatcgcttttagcaactaaattttactttatctgattctggttttcgaaaatnnnnnnnnnnnnnnnnnnnnnnnnna-TACACAACA-TTTAC-A---TGATTGAAAAGAT-TATAAAATT-AA-A-ACT---A-GATTCA-TC-CA-CGA--------------ATA-CTT-GGA-GAACAAGAACAAGAACA-TTAGAAACAGT-GAC-ATCAG-CAGTG-GAATT-GCTAT-TCTGCT-TTTACAA
gi|16 : CT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-TAGTG-GATTT-GTTAT-TCTGCC-TTTtatcaattaaattcaa
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222222222222222222222222222222222222222222 2222 1111111 555555555555555555555555555 1111111111 111111111 11111 11111 111111111 1111 44444444444444 11111 1111111111111 4444444444444444444444444444444444444444444444444 5555555555 111111 22222222222222
lowQualScore : 4 66 000000000000000000000000000000000000000000000000000000 666 666 3 0000 666 3 1111111 222222222222222222222222222 9999999999 0 0 2 666666666 55 3 3 666 4 4 4 4 00000 00000 55 777 777 4 3 3 88 0 3 666666666 88 3 5555 3 99999999999999 3 44444 3 3 3 3 8888888888888 5555555555555555555555555555555555555555555555555 6 3 44 3 44 0 3 44 6 3 999 4 3 4 4 4 4 4 8 8 2222222222 4 222222 4 0 4 4 4 4 4 8 4 8 33333333333333 4 4 4 7777 66 4 4 4 4 4 5 6
lowQualScore : . .. ...................................................... ... ... . .... ... . ....... ........................... .......... . . . ......... .. . . ... . . . . ..... ..... .. ... ... . . . .. . . ......... .. . .... . .............. . ..... . . . . ............. ................................................. . . .. . .. . . .. . . ... . . . . . . . . . .......... . ...... . . . . . . . . . . .............. . . . .... .. . . . . . . .
lowQualScore : 4 11 333333333333333333333333333333333333333333333333333333 444 444 6 5555 444 6 8888888 444444444444444444444444444 6666666666 2 5 1 777777777 00 6 6 444 0 0 0 0 00000 00000 55 000 000 0 6 6 66 5 6 888888888 00 6 5555 3 44444444444444 6 55555 3 3 3 3 3333333333333 5555555555555555555555555555555555555555555555555 7 3 66 3 66 4 3 66 7 3 444 0 2 4 4 4 4 4 9 9 9999999999 4 222222 4 1 4 4 4 0 0 0 0 0 55555555555555 0 0 0 7777 33 4 4 4 4 4 0 7
consensus : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGTCGA----G-CACAT-C-AT-------CGA-----GCA--------C----------TAT---G---C-TA----ATGG-G-TTATG-ACC-------TAAA-------------------A-------AAAA-A----CTA-TTTGCAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AACGTCCG-AGAAAT-ATGC-AG----A-TTGC---GATA-----C-TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-T-A-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCAT---AC----CGCCACA-ACTG-CG---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
Reference ( family-5144 ) : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGTCG-----G-CACAT-C-AT-------CGA-----GCA--------C----------TAT---G---C-TA----ATGG-G-TTATG-ACC-------TAAA-------------------A-------AAAA-A----CTG-TTTGCAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AACGTCCG-AGAAAT-ATGC-AG----A-TTGC---GATA-----C-TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-T-A-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCAT---ACT---CGCCACA-ACTG-CG---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
gi|1 : AATCAA-GGCC-AGAAGGGTTCCACAAAG-CGTCGCGCAAG-CACAT-C-AA-------TAATACATGTA--------TA---------TAT---GAATC-TA-----TGG-G-TTATGGACC-------TTAA-------------------T-------ATAA-A----CT--TTTGCAGAGTGCGTTTGGGAACTTTCTTAT--CGA--TCG-ATTGC-AT---G-ACTTAC-TTTC-GAATTAATT-----TCGATA--T---AGTTTT---TTC-AAAA-CGTTAAAT-TGGCCCGAAGTT-AACAT-CG-AAAAAC--TGT-AG----A--TGC---AAT--------TACA-TCGCT--T-TTAGCAACTA-A-ATTTT-ACT-------------TTAT--------------C----T-G--------------A------------
gi|1 : G-C-GATTTT--GTA-T--GAAACCAC-AA--T-C-TCA-TAA-TTCATA-TAAAA-GT-T-AT-CTTT-AGTTTCATTCAT---A-----TGCCACA-ACTG-CA---TGGAAAAAT-TCTCTTT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----ATTGAATA-TTGGATACAAT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCttctggttttcgaaaatnnnnnnnnnnnnnnnnnnnnnnnnnagcgattttgtatgaaaccacaatctcataattcatataaaagttatctttagtttcattcatatgccacaactgcatggaaaaattctctttcacactctagattcatccgcgaatatgtatgtaactattgaatattggatacaataacatcagcagtggatttgttattc
gi|10 : aatcaaggccagaagggttccacaaagcgtcgcgcaagcacatcaataatacatgtatatatgaatctatgggttatggaccttaatataaacttttgcagagtgcgtttgggaactttcttatcgatcgattgcatgacttactttcgaattaatttcgatatagttttttcaaaacgttaaattggcccgaagttaacatcgaaaaactgtagatgcaattacatcgcttttagcaactaaattttactttatctgattctggttttcgaaaatnnnnnnnnnnnnnnnnnnnnnnnnnaAT--------------T----C-G--------------A------------AATGGGC-GATTTT--G-A-T--GAACCAAC-GAAAC-C-TCAAT-AATTCATA-TAAAA-ATAT-GC-T-TT-AGTTTCATTCAACCAACG---CGCAACA-ACTG-TACATTGGGAGAATGTCTTATTGC-AC-ACTTCTA-GATTCAATC-CGGCAA--------------ATA-TGT-ATGGTCACT----CT-GAATA-TTAGAAACAGT-AACAATCAGACA-TGAGATTTGGTTAT-T-TGCTGTTTCAAA
gi|11 : -TAAAT-TGG--CGAATTT-AACATCCG-AGAAAT-ATAT-AT----A-TTGT---AATAA----CATAGA-TTGTA--T-TTATAAATCC-A-ATTCT-G-G-------------TTAT--------------T----T-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-T-A-TT-------AAA-GT-T-AT-C-TTTAGTTTCATACAT---AC-----GCCAC---------------GAAAAT-TCTCATT-C-AC-AAT-CTA-GATTCA-TC-TG-TGA--------------ATA-TGT-ATA-TAACT----CTTtatcaattaaattcaa
gi|12 : AGGCGTCAA----G-CACAT-C-ATATTA---CAT-----GTATAATGAT-C----------TAT---G---C-TA----ATGG-T-TTTTG-ACC-------TGAA-------------------A-------AAAA-AAACCCTG-TTTGCAGAAAGCACGGGAAAAC-----------GA--TCG-GTT-------------------TT-G-----ATT-----CATATA--T---AATTCC---TTCGAAAA-TG-TAAAT-TGA--AGAAGTT-AACGTTCG-AGAAAT-ATGC-AG----A-TTattaa
gi|13 : -CTA-GATTCA-TC-CA-CGA--------------ATA-CTT-GGA-GAACAAGAACAAGAACA-TTAGAAACAGT-GAC-ATCAG-CAGTG-GAATT-GCTAT-TCTGCT-TTTACAA
gi|14 : tacacaacatttacatgattgaaaagattataaaattaaaa--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--TGC-----------CATA-TAAAA-GG-T-ATAT-TT-AGTTTCATTCAT---AT-----GTCACA-ACTG-TG---TAAGAAACT-TATCATC-T-AC-ACT-CTA-CATTTA-TC-CG-CAT--------------ATA-TGT-ATG-TAACT----CTtatcaattaaattcaa
gi|15 : aTCAAAGGCC-AGAAGGG--CCACAAAGGCATCGA----G-CACATAT-AT--------GA------TA-------------------TAT---G---C-TATAG-ATTG-G-TTATG-ACC-------TAAA-------------------ATTAAAAAAAAA-A----CTA-TTTGCAGAATACGCGGACCAACTT-CTTAT--CGA--TTG-ANGGC-AT---agtt
gi|16 : CT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-TAGTG-GATTT-GTTAT-TCTGCC-TTT
gi|17 : AATCAAAGGCC-TGAAGAG--CCATGAAGGCGTCGT----G-CACAT-C-cagtagaatatcaattaaattcaat
gi|18 : -TTGC---AAT--------TACA-TCAC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------C----T-G--------------A------------ggtgtatacatttta
gi|2 : AAATCAACGGCCCAGAAGGG--CCAC-AAGGCGTCGA----G-CACAT-CAATATTTAAACGAT----GTATATATATCC----------TAT---G---C-CA----ATGG-GTTTATG-ACC--------AAC-------------------A-------AAAA-C----CTATTTTGCAGAATGCAC-GGGAAAC-------------------ATTGTAAT---G-AC--ACTTTTT-G-----GTT-----TCGCTAATT---AGTTTC---TTTGAAAA-TG-TAAATATGG--CAAAGTT-AACATCAGAAGAAATAATGCTAG----ATTTGCT--CAAA-----C-TACA-TTGT---T-TTAGCAACTA-GAATTTTAA-TTTATCAAATTCTGTTAT--------------T----T-G--------------A------------CATGGCC-GATTTTTGGTA-T---AAACCACAGA--TAC-TCA-T-A-TTTATACTAAAAGGT-T-AT-C--T-AATTT-ATCCAT----------GCCAAA-ACTGCCG---TGGGAAAAT-TCTCATT-C-ACAACT-CTACGATGAATTC-CGTCGA--------------ATATTGTGATG-GAACT----CTTGAATACTTAGAAACAGTGAAC-ATCAG-CAGTG-AATTT-G
gi|3 : aAAATCAAAGAGC-AGAAGGG--TTACAAAGGCGTTG-----AACACAT-C-ATATTA---CAT-----GCA-------------------TATAACG---C-TA----ATGG---TTATG-ACC-------TAAA-------------------A-------AAA-------CTA-TTTGGAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCGTATTGC-AT---GGAC-TAT-TTTC-G-----GTTACTATTTAATA--T---AGTTTC---TTCGGAAA-TG-TAAAT-TGG--TGAAGTTCAACATCCG-AGAAAT-ATGC-AG----A-T-GA---GAT------T-TACAATT-------------ACTA-G-ATTTT-A-T-------------TTAT--------------C----C-A--------------ATCTGTGTATTCAAATGG---AATTTT--GTAAT--GGAAC-AT-AA--T-C-TCA-T-A-T-CATA-TAAAA-GT-T-AT-C-TTTAGTTTCACT------AC-----GCAACATCCTG-CG---TTGGGACAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TCTCA-CGATATGTATGAGCAATACA-TGT-GTG-TAACT----CTTG-ATA-TTAGAAATAGT-AAC-GTCAG-T-GTG-GATTT-GTTATATCTGCT-
gi|4 : -C-AT-------CGA-----GCA--------CATATATGATATAT---G---C-TATAA-ATGG-G-TTATG-ACC-------TAAA-------------------ATAAAAAAAAAA-A----CTG-TTTGCAGAATACGCGGGCCAACTT-------------------TGC-AT---T-AC-TAC-TTTC-A-----GTT-----TCGATA--C---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-A---TGC----AGAT--TGC-AATTACA-TTGCCCAGATATGTCTC-TGCA-TTGC---C-TTAGCAACTA-G-ATTTT-A-T-------------ATAT--------------T----T-A--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-T-
gi|4 : ggAACCACG-ATCTC-A-T-------------TGAT--------------TTAGGC-C--------------N------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA---A-TT--------AG-GC-CAAT-CTTT-AGTTTCATTCAT---G-----CGCCACA-ACTG-CT---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-AG-CGA--------------ATA-TGA-ATG-TAACT----CTTGAAT---------------AC-ATCAA-CAGTG-GATTT-GTTTT-TCTGCT-TTTAAAAtgatttaggccnaatggcgattttgtatgaaaccacgatctcaattaggccaatctttagtttcattcatgcgccacaactgcttgggaaaattctcattcacactctagattcatcagcgaatatgaatgtaactcttgaatacatcaacagtggatttgtttttctgcttttaaaatatcaattaaattcaa
gi|5 : ggcatcgagcacatatatgatatatgctataaatgggttatgacctaaaataaaaaaaaaaactgtttgcagaatacgcgggccaactttgcattactactttcagtttcgatacagtttcttcgaaaatgtaaattggcgaagttatgcagattgcaattacattgcccagatatgtctctgcattgccttagcaactagattttatatatttaaaatggcgattttgtatgaAAATCAAAGGCC-AGAAGGC--TCCCAA-GGCG----------CAC-T-C----------CGA-----GCA--------CGTATATGAA-TAT---G---C-TATAGAATGGAG-TTATG-ACCGTGAAAATAAA-------------------A-------AAAA-AAAA-CTG-TTTGCAGAATACGCGGCCAA-CTT-TGCATTACTACTTCA-GTTTC-GTACAG-GT-TGT-TTACTG-----GTT-----TCGGTG--CTTAAATTTTGGATTCGAAAAATG-TAAAT-TGGG-CGAA-TT-A---TGC----AGAT--TGC-AATTACA-TTGCCA-GATAATCT-C-TGCA-TTGCGCGTGTTAGCAACTA-G-ATTTT-A-T-------------ATAT--------------T----TTA--------------A------------AATGG-CCGATTTT--GTA-TTTGAAAC-AC-GA--T-CCTCA---A-TTTTGG-CCAA-----T-CT-T-TT-AGTTTCATTCAT---G------GCCACA-ACTG-CT---TGGGAAAAT-T-TCATT-CAAC-ACT-CTA-GA-TCA-TC-AG-CGA--------------ATA-TGA-ATG-TAACT----CTTGAAT---------------AC-ATCAA-CAGTG-GATTT-GTTTT-TCTGCtatcaattaaattcaa
gi|6 : aAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGTCG--------ACAT-G-GT-------CGA-----GCA--------C----------TAT---G---C-TA----ATGG-G-TTATG-ACC-------TGAA-------------------A-------AAAA-C----CTA-TTTGCAGACAGCGCGGGGAAACTT-CTTAT--TGA--TCG-GTTGC-AT---G-AC-TAC-TTTC-A-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AATGTCCG-AGAAAT-ATGC-AG----A-TTGC---AATA-----C-TACA-TTGT---T-TTAGCAACTA-G-ATTTT-A-T-------------TCAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCA--GA--T-C-TCA-T-A-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCAT---ACTGTACACCACA-ACTG-CA---TGGGAAAAT-TTTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTC-GTTAT-TCTGCC-TTTAAAA
gi|7 : tAATCAAAAGCC-AGAAGGG--TCACATAGGC-------------------AT-------CGA-----GGA--------C-----------AT---G---TATA----AT-----CTATG---C-------TAA--------------------------------------------TG--GGTTGCGCGGAGAAACTT-C------CGA--GCG-ATTGC-AT---G-AT-TAT-TTTC-G-----GTT-----TAGATA--T---AGTTTC---TTCGAAAG-TG-TAAAT-TG--------TT-AACATCCG-CGAAAT-ATGC-AG----A-TTGC---AAT--------TACA-ATGC---C-TTAGCAACTA-G-ATTTT-A-T-------------TTATCTGATTCTGGTTATT----C-A--------------A------------AATGG-C-AATTTT--GTA-T--GAAACCAC-AA--T-C-
gi|8 : AATCAAAGGAC-AGAAGGG--CCACAAAGGCGTAGA----G-CACA--------------------------------C----------TA--------C-T------TGG-G-TTATG-ACC-------TAAA-------------------ATT-----AAAA-A-------------AAAA---------AAA-----TTAT--CGA--TTG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---GGTTTC---TTCGAAAA-TA-GAAAT-TGG--CATAGT----------------T-ATGT-AG---------------------------A-TTGC---C-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------C----C-GATTCAGGTTATTCAA------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-T-A-TTCA
gi|9 : gGCATCGA----G-CACAT-C-ATATTA---CAT-----GTATATATGATC----------TAT---G---C-TA----ATGG-G-TTATG-ACC-------TAAAAAAAACCAAAAAACAAAAAA-------AAAACA----CTA-TTTGCAGAATGCGCGTGGAAACTT-CTTAT--AGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TA-----------AAATT-AGC-------GAAAT-ATGT-AG----A-TTGC---AAT--------TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 222222222222222222222222222222222 2222 444444444444444444444444444444444444444444444 111111 111111111 11111 11111 111111111 1111 44444444444444 11111 1111111111111 4444444444444444444444444444444444444444444444444 44444444444 111111 22222222222222
lowQualScore : 4 66 0 7777 7777 333333333333333333333333333333333 7777777 0000 666 3 444444444444444444444444444444444444444444444 777777 77 0 0 2 666666666 55 3 3 666 4 4 4 4 00000 00000 55 777 777 4 3 3 88 0 3 666666666 88 3 5555 3 99999999999999 3 44444 3 3 3 3 8888888888888 5555555555555555555555555555555555555555555555555 6 3 44 3 44 0 3 44 6 3 55 8 3 4 4 4 4 4 8 8 55555555555 4 222222 4 0 4 4 4 4 4 8 4 8 33333333333333 4 4 4 7777 66 4 4 4 4 4 5 6
lowQualScore : . .. . .... .... ................................. ....... .... ... . ............................................. ...... .. . . . ......... .. . . ... . . . . ..... ..... .. ... ... . . . .. . . ......... .. . .... . .............. . ..... . . . . ............. ................................................. . . .. . .. . . .. . . .. . . . . . . . . . ........... . ...... . . . . . . . . . . .............. . . . .... .. . . . . . . .
lowQualScore : 4 11 8 1111 1111 000000000000000000000000000000000 3333333 5555 444 6 444444444444444444444444444444444444444444444 555555 55 2 5 1 777777777 00 6 6 444 0 0 0 0 00000 00000 55 000 000 0 6 6 66 5 6 888888888 00 6 5555 3 44444444444444 6 55555 3 3 3 3 3333333333333 5555555555555555555555555555555555555555555555555 7 3 66 3 66 4 3 66 7 3 77 0 2 4 4 4 4 4 9 9 88888888888 4 222222 4 1 4 4 4 0 0 0 0 0 55555555555555 0 0 0 7777 33 4 4 4 4 4 0 7
consensus : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----AGCACAT-C-ATA------CGA-----GTA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------T-------AAA-------------------A-------AAAA-A----CTA-TTTGCAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AACGTCCG-AGAAAT-ATGC-AG----A-TTGC---GATA-----C-TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATAC----C-----GCCACA-ACTG-CG---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
Reference ( family-5144 ) : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----AGCACAT-C-AT-------CGA-----GCA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------T-------AAA-------------------A-------AAAA-A----CTA-TTTGCAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AACGTCCG-AGAAAT-ATGC-AG----A-TTGC---GATA-----C-TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATAC----C-----GCCACA-ACTG-CG---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
gi|1 : AATCAA-GGCC-AGAAGGGTTCCACAAAG-CGT----CGCGCAAGCACAT-C-AA-------TAATACATGTA--------TATAT---GAATCTA-----TGG-G-TTATGGACC-------T-------TAA-------------------T-------ATAA-A----CT--TTTGCAGAGTGCGTTTGGGAACTTTCTTAT--CGA--TCG-ATTGC-AT---G-ACTTAC-TTTC-GAATTAATT-----TCGATA--T---AGTTTT---TTC-AAAA-CGTTAAAT-TGGCCCGAAGTT-AACAT-CG-AAAAAC--TGT-AG----A--TGC---AAT--------TACA-TCGCT--T-TTAGCAACTA-A-ATTTT-ACT-------------TTAT--------------C----T-G--------------A------------
gi|1 : G-C-GATTTT--GTA-T--GAAACCAC-AA--T-C-TCA-TAATTCATA-TAAAA-GT-T-AT-CTTT-AGTTTCATTCATA-----T-----GCCACA-ACTG-CA---TGGAAAAAT-TCTCTTT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----ATTGAATA-TTGGATACAAT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCttctggttttcgaaaatnnnnnnnnnnnnnnnnnnnnnnnnnagcgattttgtatgaaaccacaatctcataattcatataaaagttatctttagtttcattcatatgccacaactgcatggaaaaattctctttcacactctagattcatccgcgaatatgtatgtaactattgaatattggatacaataacatcagcagtggatttgttattc
gi|10 : aatcaaggccagaagggttccacaaagcgtcgcgcaagcacatcaataatacatgtatatatgaatctatgggttatggaccttaatataaacttttgcagagtgcgtttgggaactttcttatcgatcgattgcatgacttactttcgaattaatttcgatatagttttttcaaaacgttaaattggcccgaagttaacatcgaaaaactgtagatgcaattacatcgcttttagcaactaaattttactttatctgattctggttttcgaaaatnnnnnnnnnnnnnnnnnnnnnnnnnaAT--------------T----C-G--------------A------------AATGGGC-GATTTT--G-A-T--GAACCAAC-GAAAC-C-TCAATAATTCATA-TAAAA-ATAT-GC-T-TT-AGTTTCATTCA-AC----CAACGCGCAACA-ACTG-TACATTGGGAGAATGTCTTATTGC-AC-ACTTCTA-GATTCAATC-CGGCAA--------------ATA-TGT-ATGGTCACT----CT-GAATA-TTAGAAACAGT-AACAATCAGACA-TGAGATTTGGTTAT-T-TGCTGTTTCAAA
gi|11 : -TAAAT-TGG--CGAATTT-AACATCCG-AGAAAT-ATAT-AT----A-TTGT---AATAA----CATAGA-TTGTA--T-TTATAAATCC-A-ATTCT-G-G-------------TTAT--------------T----T-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TT-------AAA-GT-T-AT-C-TTTAGTTTCATACATAC----------GCCAC---------------GAAAAT-TCTCATT-C-AC-AAT-CTA-GATTCA-TC-TG-TGA--------------ATA-TGT-ATA-TAACT----CTTtatcaattaaattcaa
gi|12 : AGGCGT----CA----AGCACAT-C-ATATTA---CAT-----GTATAATGAT-C-TAT---G---CTA----ATGG-T-TTTTG-ACC-------T-------GAA-------------------A-------AAAA-AAACCCTG-TTTGCAGAAAGCACGGGAAAAC-----------GA--TCG-GTT-------------------TT-G-----ATT-----CATATA--T---AATTCC---TTCGAAAA-TG-TAAAT-TGA--AGAAGTT-AACGTTCG-AGAAAT-ATGC-AG----A-TTattaa
gi|13 : -CTA-GATTCA-TC-CA-CGA--------------ATA-CTT-GGA-GAACAAGAACAAGAACA-TTAGAAACAGT-GAC-ATCAG-CAGTG-GAATT-GCTAT-TCTGCT-TTTACAA
gi|14 : tacacaacatttacatgattgaaaagattataaaattaaaa--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--TGC----------CATA-TAAAA-GG-T-ATAT-TT-AGTTTCATTCATAT----------GTCACA-ACTG-TG---TAAGAAACT-TATCATC-T-AC-ACT-CTA-CATTTA-TC-CG-CAT--------------ATA-TGT-ATG-TAACT----CTtatcaattaaattcaa
gi|15 : aTCAAAGGCC-AGAAGGG--CCACAAAGGCAT----CG----AGCACAT---ATA------TGA------TA----------TAT---G---CTATAG-ATTG-G-TTATG-ACC-------TAAAATTAAAA-------------------A-------AAAA-A----CTA-TTTGCAGAATACGCGGACCAACTT-CTTAT--CGA--TTG-ANGGC-AT---agtt
gi|16 : CT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-TAGTG-GATTT-GTTAT-TCTGCC-TTT
gi|17 : AATCAAAGGCC-TGAAGAG--CCATGAAGGCGT----CG----TGCACAT-C-cagtagaatatcaattaaattcaat
gi|18 : -TTGC---AAT--------TACA-TCAC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------C----T-G--------------A------------ggtgtatacatttta
gi|2 : AAATCAACGGCCCAGAAGGG--CCACAA-GGCGT----CG----AGCACAT-CAATATTTAAACGAT----GTATATATATCC-TAT---G---CCA----ATGG-GTTTATG-ACC---------------AAC-------------------A-------AAAA-C----CTATTTTGCAGAATGCAC-GGGAAAC-------------------ATTGTAAT---G-AC--ACTTTTT-G-----GTT-----TCGCTAATT---AGTTTC---TTTGAAAA-TG-TAAATATGG--CAAAGTT-AACATCAGAAGAAATAATGCTAG----ATTTGCT--CAAA-----C-TACA-TTGT---T-TTAGCAACTA-GAATTTTAA-TTTATCAAATTCTGTTAT--------------T----T-G--------------A------------CATGGCC-GATTTTTGGTA-T---AAACCACAGA--TAC-TCA-TA-TTTATACTAAAAGGT-T-AT-C--T-AATTT-ATCCAT------------GCCAAA-ACTGCCG---TGGGAAAAT-TCTCATT-C-ACAACT-CTACGATGAATTC-CGTCGA--------------ATATTGTGATG-GAACT----CTTGAATACTTAGAAACAGTGAAC-ATCAG-CAGTG-AATTT-G
gi|3 : aAAATCAAAGAGC-AGAAGGG--TTACAAAGGCGT----TG----AACACAT-C-ATATTA---CAT-----GCA----------TATAACG---CTA----ATGG---TTATG-ACC-------T-------AAA-------------------A-------AAA-------CTA-TTTGGAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCGTATTGC-AT---GGAC-TAT-TTTC-G-----GTTACTATTTAATA--T---AGTTTC---TTCGGAAA-TG-TAAAT-TGG--TGAAGTTCAACATCCG-AGAAAT-ATGC-AG----A-T-GA---GAT------T-TACAATT-------------ACTA-G-ATTTT-A-T-------------TTAT--------------C----C-A--------------ATCTGTGTATTCAAATGG---AATTTT--GTAAT--GGAAC-AT-AA--T-C-TCA-TA-T-CATA-TAAAA-GT-T-AT-C-TTTAGTTTCACT---AC----------GCAACATCCTG-CG---TTGGGACAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TCTCA-CGATATGTATGAGCAATACA-TGT-GTG-TAACT----CTTG-ATA-TTAGAAATAGT-AAC-GTCAG-T-GTG-GATTT-GTTATATCTGCT-
gi|4 : GGCAT----CG----AGCACATAT-AT--------GA------TA----------TAT---G---CTATAA-ATGG-G-TTATG-ACC-------T-------AAA-------------------ATAAAAAAAAAA-A----CTG-TTTGCAGAATACGCGGGCCAACTT-------------------TGC-AT---T-AC-TAC-TTTC-A-----GTT-----TCGATA--C---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-A---TGC----AGAT--TGC-AATTACA-TTGCCCAGATATGTCTC-TGCA-TTGC---C-TTAGCAACTA-G-ATTTT-A-T-------------ATAT--------------T----T-A--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-T
gi|4 : AACCACG-ATCTC-A-T-------------TGAT--------------TTAGGC-C--------------N------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA--A-TT--------AG-GC-CAAT-CTTT-AGTTTCATTCATG-----C-----GCCACA-ACTG-CT---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-AG-CGA--------------ATA-TGA-ATG-TAACT----CTTGAAT---------------AC-ATCAA-CAGTG-GATTT-GTTTT-TCTGCT-TTTAAAAtgatttaggccnaatggcgattttgtatgaaaccacgatctcaattaggccaatctttagtttcattcatgcgccacaactgcttgggaaaattctcattcacactctagattcatcagcgaatatgaatgtaactcttgaatacatcaacagtggatttgtttttctgcttttaaaatatcaattaaattcaa
gi|5 : ggcatcgagcacatatatgatatatgctataaatgggttatgacctaaaataaaaaaaaaaactgtttgcagaatacgcgggccaactttgcattactactttcagtttcgatacagtttcttcgaaaatgtaaattggcgaagttatgcagattgcaattacattgcccagatatgtctctgcattgccttagcaactagattttatatatttaaaatggcgattttgtatgaAAATCAAAGGCC-AGAAGGC--TCCCAA-GGCGCACTCCG----AGCACGTAT-AT--------GA-----A------------TAT---G---CTATAGAATGGAG-TTATG-ACCGTGAAAAT-------AAA-------------------A-------AAAA-AAAA-CTG-TTTGCAGAATACGCGGCCAA-CTT-TGCATTACTACTTCA-GTTTC-GTACAG-GT-TGT-TTACTG-----GTT-----TCGGTG--CTTAAATTTTGGATTCGAAAAATG-TAAAT-TGGG-CGAA-TT-A---TGC----AGAT--TGC-AATTACA-TTGCCA-GATAATCT-C-TGCA-TTGCGCGTGTTAGCAACTA-G-ATTTT-A-T-------------ATAT--------------T----TTA--------------A------------AATGG-CCGATTTT--GTA-TTTGAAAC-AC-GA--T-CCTCA--A-TTTTGG-CCAA-----T-CT-T-TT-AGTTTCATTCATG-----------GCCACA-ACTG-CT---TGGGAAAAT-T-TCATT-CAAC-ACT-CTA-GA-TCA-TC-AG-CGA--------------ATA-TGA-ATG-TAACT----CTTGAAT---------------AC-ATCAA-CAGTG-GATTT-GTTTT-TCTGCtatcaattaaattcaa
gi|6 : aAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----A---CAT-G-GT-------CGA-----GCA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------T-------GAA-------------------A-------AAAA-C----CTA-TTTGCAGACAGCGCGGGGAAACTT-CTTAT--TGA--TCG-GTTGC-AT---G-AC-TAC-TTTC-A-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AATGTCCG-AGAAAT-ATGC-AG----A-TTGC---AATA-----C-TACA-TTGT---T-TTAGCAACTA-G-ATTTT-A-T-------------TCAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCA--GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATACTGTAC-----ACCACA-ACTG-CA---TGGGAAAAT-TTTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTC-GTTAT-TCTGCC-TTTAAAA
gi|7 : tAATCAAAAGCC-AGAAGGG--TCACATAGGCAT----CG----AGGA----C-AT---------------GTA---------------------TA----AT-----CTATG---C-------T-------AA--------------------------------------------TG--GGTTGCGCGGAGAAACTT-C------CGA--GCG-ATTGC-AT---G-AT-TAT-TTTC-G-----GTT-----TAGATA--T---AGTTTC---TTCGAAAG-TG-TAAAT-TG--------TT-AACATCCG-CGAAAT-ATGC-AG----A-TTGC---AAT--------TACA-ATGC---C-TTAGCAACTA-G-ATTTT-A-T-------------TTATCTGATTCTGGTTATT----C-A--------------A------------AATGG-C-AATTTT--GTA-T--GAAACCAC-AA--T-C-
gi|8 : AATCAAAGGAC-AGAAGGG--CCACAAAGGCGT----AG----AGCACA--------------------------------C-TA--------CT------TGG-G-TTATG-ACC-------T-------AAA-------------------ATT-----AAAA-A-------------AAAA---------AAA-----TTAT--CGA--TTG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---GGTTTC---TTCGAAAA-TA-GAAAT-TGG--CATAGT----------------T-ATGT-AG---------------------------A-TTGC---C-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------C----C-GATTCAGGTTATTCAA------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCA
gi|9 : gGCAT----CG----AGCACAT-C-ATATTA---CAT-----GTATATATGATC-TAT---G---CTA----ATGG-G-TTATG-ACC-------T-------AAAAAAAACCAAAAAACAAAAAA-------AAAACA----CTA-TTTGCAGAATGCGCGTGGAAACTT-CTTAT--AGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TA-----------AAATT-AGC-------GAAAT-ATGT-AG----A-TTGC---AAT--------TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------
Alignments
lowQualScore : 999999999999999999999999999999999999999999999999999 1111111 555555555555555555555555555 111111 111111111 11111 11111 111111111 1111 44444444444444 11111 1111111111111 4444444444444444444444444444444444444444444444444 44444444444 111111 22222222222222
lowQualScore : 4 66 0 7777 7777 444444444444444444444444444444444444444444444444444 666 3 1111111 222222222222222222222222222 777777 77 0 0 2 666666666 55 3 3 666 4 4 4 4 00000 00000 55 777 777 4 3 3 88 0 3 666666666 88 3 5555 3 99999999999999 3 44444 3 3 3 3 8888888888888 5555555555555555555555555555555555555555555555555 6 3 44 3 44 0 3 44 6 3 55 8 3 4 4 4 4 4 8 8 55555555555 4 222222 4 0 4 4 4 4 4 8 4 8 33333333333333 4 4 4 7777 66 4 4 4 4 4 5 6
lowQualScore : . .. . .... .... ................................................... ... . ....... ........................... ...... .. . . . ......... .. . . ... . . . . ..... ..... .. ... ... . . . .. . . ......... .. . .... . .............. . ..... . . . . ............. ................................................. . . .. . .. . . .. . . .. . . . . . . . . . ........... . ...... . . . . . . . . . . .............. . . . .... .. . . . . . . .
lowQualScore : 4 11 8 1111 1111 888888888888888888888888888888888888888888888888888 444 6 8888888 444444444444444444444444444 555555 55 2 5 1 777777777 00 6 6 444 0 0 0 0 00000 00000 55 000 000 0 6 6 66 5 6 888888888 00 6 5555 3 44444444444444 6 55555 3 3 3 3 3333333333333 5555555555555555555555555555555555555555555555555 7 3 66 3 66 4 3 66 7 3 77 0 2 4 4 4 4 4 9 9 88888888888 4 222222 4 1 4 4 4 0 0 0 0 0 55555555555555 0 0 0 7777 33 4 4 4 4 4 0 7
consensus : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----AGCACATC-A----T------ACGA---GTA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------TAAA-------------------A-------AAAA-A----CTA-TTTGCAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AACGTCCG-AGAAAT-ATGC-AG----A-TTGC---GATA-----C-TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATAC----C-----GCCACA-ACTG-CG---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
Reference ( family-5144 ) : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----AGCACATC-A----T------ACGA---GTA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------TAAA-------------------A-------AAAA-A----CTA-TTTGCAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AACGTCCG-AGAAAT-ATGC-AG----A-TTGC---GATA-----C-TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATAC----C-----GCCACA-ACTG-CG---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
gi|1 : AATCAA-GGCC-AGAAGGGTTCCACAAAG-CGT----CGCGCAAGCACATC-AATAAT------ACAT---GTA--------TATAT---GAATCTA-----TGG-G-TTATGGACC-------TTAA-------------------T-------ATAA-A----CT--TTTGCAGAGTGCGTTTGGGAACTTTCTTAT--CGA--TCG-ATTGC-AT---G-ACTTAC-TTTC-GAATTAATT-----TCGATA--T---AGTTTT---TTC-AAAA-CGTTAAAT-TGGCCCGAAGTT-AACAT-CG-AAAAAC--TGT-AG----A--TGC---AAT--------TACA-TCGCT--T-TTAGCAACTA-A-ATTTT-ACT-------------TTAT--------------C----T-G--------------A------------
gi|1 : G-C-GATTTT--GTA-T--GAAACCAC-AA--T-C-TCA-TAATTCATA-TAAAA-GT-T-AT-CTTT-AGTTTCATTCATA-----T-----GCCACA-ACTG-CA---TGGAAAAAT-TCTCTTT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----ATTGAATA-TTGGATACAAT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCttctggttttcgaaaatnnnnnnnnnnnnnnnnnnnnnnnnnagcgattttgtatgaaaccacaatctcataattcatataaaagttatctttagtttcattcatatgccacaactgcatggaaaaattctctttcacactctagattcatccgcgaatatgtatgtaactattgaatattggatacaataacatcagcagtggatttgttattc
gi|10 : aatcaaggccagaagggttccacaaagcgtcgcgcaagcacatcaataatacatgtatatatgaatctatgggttatggaccttaatataaacttttgcagagtgcgtttgggaactttcttatcgatcgattgcatgacttactttcgaattaatttcgatatagttttttcaaaacgttaaattggcccgaagttaacatcgaaaaactgtagatgcaattacatcgcttttagcaactaaattttactttatctgattctggttttcgaaaatnnnnnnnnnnnnnnnnnnnnnnnnnaAT--------------T----C-G--------------A------------AATGGGC-GATTTT--G-A-T--GAACCAAC-GAAAC-C-TCAATAATTCATA-TAAAA-ATAT-GC-T-TT-AGTTTCATTCA-AC----CAACGCGCAACA-ACTG-TACATTGGGAGAATGTCTTATTGC-AC-ACTTCTA-GATTCAATC-CGGCAA--------------ATA-TGT-ATGGTCACT----CT-GAATA-TTAGAAACAGT-AACAATCAGACA-TGAGATTTGGTTAT-T-TGCTGTTTCAAA
gi|11 : -TAAAT-TGG--CGAATTT-AACATCCG-AGAAAT-ATAT-AT----A-TTGT---AATAA----CATAGA-TTGTA--T-TTATAAATCC-A-ATTCT-G-G-------------TTAT--------------T----T-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TT-------AAA-GT-T-AT-C-TTTAGTTTCATACATAC----------GCCAC---------------GAAAAT-TCTCATT-C-AC-AAT-CTA-GATTCA-TC-TG-TGA--------------ATA-TGT-ATA-TAACT----CTTtatcaattaaattcaa
gi|12 : AGGCGT----CA----AGCACATC-A----T------ATTACATGTATAATGAT-C-TAT---G---CTA----ATGG-T-TTTTG-ACC-------TGAA-------------------A-------AAAA-AAACCCTG-TTTGCAGAAAGCACGGGAAAAC-----------GA--TCG-GTT-------------------TT-G-----ATT-----CATATA--T---AATTCC---TTCGAAAA-TG-TAAAT-TGA--AGAAGTT-AACGTTCG-AGAAAT-ATGC-AG----A-TTattaa
gi|13 : -CTA-GATTCA-TC-CA-CGA--------------ATA-CTT-GGA-GAACAAGAACAAGAACA-TTAGAAACAGT-GAC-ATCAG-CAGTG-GAATT-GCTAT-TCTGCT-TTTACAA
gi|14 : tacacaacatttacatgattgaaaagattataaaattaaaa--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--TGC----------CATA-TAAAA-GG-T-ATAT-TT-AGTTTCATTCATAT----------GTCACA-ACTG-TG---TAAGAAACT-TATCATC-T-AC-ACT-CTA-CATTTA-TC-CG-CAT--------------ATA-TGT-ATG-TAACT----CTtatcaattaaattcaa
gi|15 : aTCAAAGGCC-AGAAGGG--CCACAAAGGCAT----CG----AGCACAT--A----T------ATGA----TA----------TAT---G---CTATAG-ATTG-G-TTATG-ACC-------TAAA-------------------ATTAAAAAAAAA-A----CTA-TTTGCAGAATACGCGGACCAACTT-CTTAT--CGA--TTG-ANGGC-AT---agtt
gi|16 : CT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-TAGTG-GATTT-GTTAT-TCTGCC-TTT
gi|17 : AATCAAAGGCC-TGAAGAG--CCATGAAGGCGT----CG----TGCACATC-cagtagaatatcaattaaattcaat
gi|18 : -TTGC---AAT--------TACA-TCAC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------C----T-G--------------A------------ggtgtatacatttta
gi|2 : AAATCAACGGCCCAGAAGGG--CCACAA-GGCGT----CG----AGCACATCAA----TATTTAAACGAT--GTATATATATCC-TAT---G---CCA----ATGG-GTTTATG-ACC--------AAC-------------------A-------AAAA-C----CTATTTTGCAGAATGCAC-GGGAAAC-------------------ATTGTAAT---G-AC--ACTTTTT-G-----GTT-----TCGCTAATT---AGTTTC---TTTGAAAA-TG-TAAATATGG--CAAAGTT-AACATCAGAAGAAATAATGCTAG----ATTTGCT--CAAA-----C-TACA-TTGT---T-TTAGCAACTA-GAATTTTAA-TTTATCAAATTCTGTTAT--------------T----T-G--------------A------------CATGGCC-GATTTTTGGTA-T---AAACCACAGA--TAC-TCA-TA-TTTATACTAAAAGGT-T-AT-C--T-AATTT-ATCCAT------------GCCAAA-ACTGCCG---TGGGAAAAT-TCTCATT-C-ACAACT-CTACGATGAATTC-CGTCGA--------------ATATTGTGATG-GAACT----CTTGAATACTTAGAAACAGTGAAC-ATCAG-CAGTG-AATTT-G
gi|3 : aAAATCAAAGAGC-AGAAGGG--TTACAAAGGCGT----TG----AACACATC-A----T------ATTAC--ATG--------CATATAACG---CTA----ATGG---TTATG-ACC-------TAAA-------------------A-------AAA-------CTA-TTTGGAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCGTATTGC-AT---GGAC-TAT-TTTC-G-----GTTACTATTTAATA--T---AGTTTC---TTCGGAAA-TG-TAAAT-TGG--TGAAGTTCAACATCCG-AGAAAT-ATGC-AG----A-T-GA---GAT------T-TACAATT-------------ACTA-G-ATTTT-A-T-------------TTAT--------------C----C-A--------------ATCTGTGTATTCAAATGG---AATTTT--GTAAT--GGAAC-AT-AA--T-C-TCA-TA-T-CATA-TAAAA-GT-T-AT-C-TTTAGTTTCACT---AC----------GCAACATCCTG-CG---TTGGGACAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TCTCA-CGATATGTATGAGCAATACA-TGT-GTG-TAACT----CTTG-ATA-TTAGAAATAGT-AAC-GTCAG-T-GTG-GATTT-GTTATATCTGCT-
gi|4 : GGCAT----CG----AGCACAT--A----T------ATGA----TA----------TAT---G---CTATAA-ATGG-G-TTATG-ACC-------TAAA-------------------ATAAAAAAAAAA-A----CTG-TTTGCAGAATACGCGGGCCAACTT-------------------TGC-AT---T-AC-TAC-TTTC-A-----GTT-----TCGATA--C---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-A---TGC----AGAT--TGC-AATTACA-TTGCCCAGATATGTCTC-TGCA-TTGC---C-TTAGCAACTA-G-ATTTT-A-T-------------ATAT--------------T----T-A--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-T
gi|4 : AACCACG-ATCTC-A-T-------------TGAT--------------TTAGGC-C--------------N------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA--A-TT--------AG-GC-CAAT-CTTT-AGTTTCATTCATG-----C-----GCCACA-ACTG-CT---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-AG-CGA--------------ATA-TGA-ATG-TAACT----CTTGAAT---------------AC-ATCAA-CAGTG-GATTT-GTTTT-TCTGCT-TTTAAAAtgatttaggccnaatggcgattttgtatgaaaccacgatctcaattaggccaatctttagtttcattcatgcgccacaactgcttgggaaaattctcattcacactctagattcatcagcgaatatgaatgtaactcttgaatacatcaacagtggatttgtttttctgcttttaaaatatcaattaaattcaa
gi|5 : ggcatcgagcacatatatgatatatgctataaatgggttatgacctaaaataaaaaaaaaaactgtttgcagaatacgcgggccaactttgcattactactttcagtttcgatacagtttcttcgaaaatgtaaattggcgaagttatgcagattgcaattacattgcccagatatgtctctgcattgccttagcaactagattttatatatttaaaatggcgattttgtatgaAAATCAAAGGCC-AGAAGGC--TCCCAA-GGCGCACTCCG----AGCACGT--A----T------ATGA---ATA------------T---G---CTATAGAATGGAG-TTATG-ACCGTGAAAATAAA-------------------A-------AAAA-AAAA-CTG-TTTGCAGAATACGCGGCCAA-CTT-TGCATTACTACTTCA-GTTTC-GTACAG-GT-TGT-TTACTG-----GTT-----TCGGTG--CTTAAATTTTGGATTCGAAAAATG-TAAAT-TGGG-CGAA-TT-A---TGC----AGAT--TGC-AATTACA-TTGCCA-GATAATCT-C-TGCA-TTGCGCGTGTTAGCAACTA-G-ATTTT-A-T-------------ATAT--------------T----TTA--------------A------------AATGG-CCGATTTT--GTA-TTTGAAAC-AC-GA--T-CCTCA--A-TTTTGG-CCAA-----T-CT-T-TT-AGTTTCATTCATG-----------GCCACA-ACTG-CT---TGGGAAAAT-T-TCATT-CAAC-ACT-CTA-GA-TCA-TC-AG-CGA--------------ATA-TGA-ATG-TAACT----CTTGAAT---------------AC-ATCAA-CAGTG-GATTT-GTTTT-TCTGCtatcaattaaattcaa
gi|6 : aAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----A---CATG-G----T-------CGA---GCA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------TGAA-------------------A-------AAAA-C----CTA-TTTGCAGACAGCGCGGGGAAACTT-CTTAT--TGA--TCG-GTTGC-AT---G-AC-TAC-TTTC-A-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AATGTCCG-AGAAAT-ATGC-AG----A-TTGC---AATA-----C-TACA-TTGT---T-TTAGCAACTA-G-ATTTT-A-T-------------TCAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCA--GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATACTGTAC-----ACCACA-ACTG-CA---TGGGAAAAT-TTTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTC-GTTAT-TCTGCC-TTTAAAA
gi|7 : tAATCAAAAGCC-AGAAGGG--TCACATAGGCAT----CG----AGGACAT---------------------GTA---------------------TA----AT-----CTATG---C-------TAA--------------------------------------------TG--GGTTGCGCGGAGAAACTT-C------CGA--GCG-ATTGC-AT---G-AT-TAT-TTTC-G-----GTT-----TAGATA--T---AGTTTC---TTCGAAAG-TG-TAAAT-TG--------TT-AACATCCG-CGAAAT-ATGC-AG----A-TTGC---AAT--------TACA-ATGC---C-TTAGCAACTA-G-ATTTT-A-T-------------TTATCTGATTCTGGTTATT----C-A--------------A------------AATGG-C-AATTTT--GTA-T--GAAACCAC-AA--T-C-
gi|8 : AATCAAAGGAC-AGAAGGG--CCACAAAGGCGT----AG----AGCACAC----------------------TA--------C-T-----------------TGG-G-TTATG-ACC-------TAAA-------------------ATT-----AAAA-A-------------AAAA---------AAA-----TTAT--CGA--TTG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---GGTTTC---TTCGAAAA-TA-GAAAT-TGG--CATAGT----------------T-ATGT-AG---------------------------A-TTGC---C-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------C----C-GATTCAGGTTATTCAA------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCA
gi|9 : gGCAT----CG----AGCACATC-A----T------ATTACATGTATATATGATC-TAT---G---CTA----ATGG-G-TTATG-ACC-------TAAAAAAAACCAAAAAACAAAAAA-------AAAACA----CTA-TTTGCAGAATGCGCGTGGAAACTT-CTTAT--AGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TA-----------AAATT-AGC-------GAAAT-ATGT-AG----A-TTGC---AAT--------TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------
Alignments
lowQualScore : 999999999999999999999999999999999999999999999999999 1111111 555555555555555555555555555 111111 111111111 11111 11111 111111111 1111 44444444444444 11111 1111111111111 4444444444444444444444444444444444444444444444444 44444444444 111111 22222222222222
lowQualScore : 4 66 0 7777 7777 444444444444444444444444444444444444444444444444444 666 3 1111111 222222222222222222222222222 777777 77 0 0 2 666666666 55 3 3 666 4 4 4 4 00000 00000 55 777 777 4 3 3 88 0 3 666666666 88 3 5555 3 99999999999999 3 44444 3 3 3 3 8888888888888 5555555555555555555555555555555555555555555555555 6 3 44 3 44 0 3 44 6 3 55 8 3 4 4 4 4 4 8 8 55555555555 4 222222 4 0 4 4 4 4 4 8 4 8 33333333333333 4 4 4 7777 66 4 4 4 4 4 5 6
lowQualScore : . .. . .... .... ................................................... ... . ....... ........................... ...... .. . . . ......... .. . . ... . . . . ..... ..... .. ... ... . . . .. . . ......... .. . .... . .............. . ..... . . . . ............. ................................................. . . .. . .. . . .. . . .. . . . . . . . . . ........... . ...... . . . . . . . . . . .............. . . . .... .. . . . . . . .
lowQualScore : 4 11 8 1111 1111 888888888888888888888888888888888888888888888888888 444 6 8888888 444444444444444444444444444 555555 55 2 5 1 777777777 00 6 6 444 0 0 0 0 00000 00000 55 000 000 0 6 6 66 5 6 888888888 00 6 5555 3 44444444444444 6 55555 3 3 3 3 3333333333333 5555555555555555555555555555555555555555555555555 7 3 66 3 66 4 3 66 7 3 77 0 2 4 4 4 4 4 9 9 88888888888 4 222222 4 1 4 4 4 0 0 0 0 0 55555555555555 0 0 0 7777 33 4 4 4 4 4 0 7
consensus : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----AGCACATC-A----T------ACGA---GTA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------TAAA-------------------A-------AAAA-A----CTA-TTTGCAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AACGTCCG-AGAAAT-ATGC-AG----A-TTGC---GATA-----C-TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATAC----C-----GCCACA-ACTG-CG---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
Reference ( family-5144 ) : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----AGCACATC-A----T------ACGA---GTA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------TAAA-------------------A-------AAAA-A----CTA-TTTGCAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AACGTCCG-AGAAAT-ATGC-AG----A-TTGC---GATA-----C-TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATAC----C-----GCCACA-ACTG-CG---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
gi|1 : AATCAA-GGCC-AGAAGGGTTCCACAAAG-CGT----CGCGCAAGCACATC-AATAAT------ACAT---GTA--------TATAT---GAATCTA-----TGG-G-TTATGGACC-------TTAA-------------------T-------ATAA-A----CT--TTTGCAGAGTGCGTTTGGGAACTTTCTTAT--CGA--TCG-ATTGC-AT---G-ACTTAC-TTTC-GAATTAATT-----TCGATA--T---AGTTTT---TTC-AAAA-CGTTAAAT-TGGCCCGAAGTT-AACAT-CG-AAAAAC--TGT-AG----A--TGC---AAT--------TACA-TCGCT--T-TTAGCAACTA-A-ATTTT-ACT-------------TTAT--------------C----T-G--------------A------------
gi|1 : G-C-GATTTT--GTA-T--GAAACCAC-AA--T-C-TCA-TAATTCATA-TAAAA-GT-T-AT-CTTT-AGTTTCATTCATA-----T-----GCCACA-ACTG-CA---TGGAAAAAT-TCTCTTT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----ATTGAATA-TTGGATACAAT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCttctggttttcgaaaatnnnnnnnnnnnnnnnnnnnnnnnnnagcgattttgtatgaaaccacaatctcataattcatataaaagttatctttagtttcattcatatgccacaactgcatggaaaaattctctttcacactctagattcatccgcgaatatgtatgtaactattgaatattggatacaataacatcagcagtggatttgttattc
gi|10 : aatcaaggccagaagggttccacaaagcgtcgcgcaagcacatcaataatacatgtatatatgaatctatgggttatggaccttaatataaacttttgcagagtgcgtttgggaactttcttatcgatcgattgcatgacttactttcgaattaatttcgatatagttttttcaaaacgttaaattggcccgaagttaacatcgaaaaactgtagatgcaattacatcgcttttagcaactaaattttactttatctgattctggttttcgaaaatnnnnnnnnnnnnnnnnnnnnnnnnnaAT--------------T----C-G--------------A------------AATGGGC-GATTTT--G-A-T--GAACCAAC-GAAAC-C-TCAATAATTCATA-TAAAA-ATAT-GC-T-TT-AGTTTCATTCA-AC----CAACGCGCAACA-ACTG-TACATTGGGAGAATGTCTTATTGC-AC-ACTTCTA-GATTCAATC-CGGCAA--------------ATA-TGT-ATGGTCACT----CT-GAATA-TTAGAAACAGT-AACAATCAGACA-TGAGATTTGGTTAT-T-TGCTGTTTCAAA
gi|11 : -TAAAT-TGG--CGAATTT-AACATCCG-AGAAAT-ATAT-AT----A-TTGT---AATAA----CATAGA-TTGTA--T-TTATAAATCC-A-ATTCT-G-G-------------TTAT--------------T----T-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TT-------AAA-GT-T-AT-C-TTTAGTTTCATACATAC----------GCCAC---------------GAAAAT-TCTCATT-C-AC-AAT-CTA-GATTCA-TC-TG-TGA--------------ATA-TGT-ATA-TAACT----CTTtatcaattaaattcaa
gi|12 : AGGCGT----CA----AGCACATC-A----T------ATTACATGTATAATGAT-C-TAT---G---CTA----ATGG-T-TTTTG-ACC-------TGAA-------------------A-------AAAA-AAACCCTG-TTTGCAGAAAGCACGGGAAAAC-----------GA--TCG-GTT-------------------TT-G-----ATT-----CATATA--T---AATTCC---TTCGAAAA-TG-TAAAT-TGA--AGAAGTT-AACGTTCG-AGAAAT-ATGC-AG----A-TTattaa
gi|13 : -CTA-GATTCA-TC-CA-CGA--------------ATA-CTT-GGA-GAACAAGAACAAGAACA-TTAGAAACAGT-GAC-ATCAG-CAGTG-GAATT-GCTAT-TCTGCT-TTTACAA
gi|14 : tacacaacatttacatgattgaaaagattataaaattaaaa--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--TGC----------CATA-TAAAA-GG-T-ATAT-TT-AGTTTCATTCATAT----------GTCACA-ACTG-TG---TAAGAAACT-TATCATC-T-AC-ACT-CTA-CATTTA-TC-CG-CAT--------------ATA-TGT-ATG-TAACT----CTtatcaattaaattcaa
gi|15 : aTCAAAGGCC-AGAAGGG--CCACAAAGGCAT----CG----AGCACAT--A----T------ATGA----TA----------TAT---G---CTATAG-ATTG-G-TTATG-ACC-------TAAA-------------------ATTAAAAAAAAA-A----CTA-TTTGCAGAATACGCGGACCAACTT-CTTAT--CGA--TTG-ANGGC-AT---agtt
gi|16 : CT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-TAGTG-GATTT-GTTAT-TCTGCC-TTT
gi|17 : AATCAAAGGCC-TGAAGAG--CCATGAAGGCGT----CG----TGCACATC-cagtagaatatcaattaaattcaat
gi|18 : -TTGC---AAT--------TACA-TCAC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------C----T-G--------------A------------ggtgtatacatttta
gi|2 : AAATCAACGGCCCAGAAGGG--CCACAA-GGCGT----CG----AGCACATCAA----TATTTAAACGAT--GTATATATATCC-TAT---G---CCA----ATGG-GTTTATG-ACC--------AAC-------------------A-------AAAA-C----CTATTTTGCAGAATGCAC-GGGAAAC-------------------ATTGTAAT---G-AC--ACTTTTT-G-----GTT-----TCGCTAATT---AGTTTC---TTTGAAAA-TG-TAAATATGG--CAAAGTT-AACATCAGAAGAAATAATGCTAG----ATTTGCT--CAAA-----C-TACA-TTGT---T-TTAGCAACTA-GAATTTTAA-TTTATCAAATTCTGTTAT--------------T----T-G--------------A------------CATGGCC-GATTTTTGGTA-T---AAACCACAGA--TAC-TCA-TA-TTTATACTAAAAGGT-T-AT-C--T-AATTT-ATCCAT------------GCCAAA-ACTGCCG---TGGGAAAAT-TCTCATT-C-ACAACT-CTACGATGAATTC-CGTCGA--------------ATATTGTGATG-GAACT----CTTGAATACTTAGAAACAGTGAAC-ATCAG-CAGTG-AATTT-G
gi|3 : aAAATCAAAGAGC-AGAAGGG--TTACAAAGGCGT----TG----AACACATC-A----T------ATTAC--ATG--------CATATAACG---CTA----ATGG---TTATG-ACC-------TAAA-------------------A-------AAA-------CTA-TTTGGAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCGTATTGC-AT---GGAC-TAT-TTTC-G-----GTTACTATTTAATA--T---AGTTTC---TTCGGAAA-TG-TAAAT-TGG--TGAAGTTCAACATCCG-AGAAAT-ATGC-AG----A-T-GA---GAT------T-TACAATT-------------ACTA-G-ATTTT-A-T-------------TTAT--------------C----C-A--------------ATCTGTGTATTCAAATGG---AATTTT--GTAAT--GGAAC-AT-AA--T-C-TCA-TA-T-CATA-TAAAA-GT-T-AT-C-TTTAGTTTCACT---AC----------GCAACATCCTG-CG---TTGGGACAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TCTCA-CGATATGTATGAGCAATACA-TGT-GTG-TAACT----CTTG-ATA-TTAGAAATAGT-AAC-GTCAG-T-GTG-GATTT-GTTATATCTGCT-
gi|4 : GGCAT----CG----AGCACAT--A----T------ATGA----TA----------TAT---G---CTATAA-ATGG-G-TTATG-ACC-------TAAA-------------------ATAAAAAAAAAA-A----CTG-TTTGCAGAATACGCGGGCCAACTT-------------------TGC-AT---T-AC-TAC-TTTC-A-----GTT-----TCGATA--C---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-A---TGC----AGAT--TGC-AATTACA-TTGCCCAGATATGTCTC-TGCA-TTGC---C-TTAGCAACTA-G-ATTTT-A-T-------------ATAT--------------T----T-A--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-T
gi|4 : AACCACG-ATCTC-A-T-------------TGAT--------------TTAGGC-C--------------N------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA--A-TT--------AG-GC-CAAT-CTTT-AGTTTCATTCATG-----C-----GCCACA-ACTG-CT---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-AG-CGA--------------ATA-TGA-ATG-TAACT----CTTGAAT---------------AC-ATCAA-CAGTG-GATTT-GTTTT-TCTGCT-TTTAAAAtgatttaggccnaatggcgattttgtatgaaaccacgatctcaattaggccaatctttagtttcattcatgcgccacaactgcttgggaaaattctcattcacactctagattcatcagcgaatatgaatgtaactcttgaatacatcaacagtggatttgtttttctgcttttaaaatatcaattaaattcaa
gi|5 : ggcatcgagcacatatatgatatatgctataaatgggttatgacctaaaataaaaaaaaaaactgtttgcagaatacgcgggccaactttgcattactactttcagtttcgatacagtttcttcgaaaatgtaaattggcgaagttatgcagattgcaattacattgcccagatatgtctctgcattgccttagcaactagattttatatatttaaaatggcgattttgtatgaAAATCAAAGGCC-AGAAGGC--TCCCAA-GGCGCACTCCG----AGCACGT--A----T------ATGA---ATA------------T---G---CTATAGAATGGAG-TTATG-ACCGTGAAAATAAA-------------------A-------AAAA-AAAA-CTG-TTTGCAGAATACGCGGCCAA-CTT-TGCATTACTACTTCA-GTTTC-GTACAG-GT-TGT-TTACTG-----GTT-----TCGGTG--CTTAAATTTTGGATTCGAAAAATG-TAAAT-TGGG-CGAA-TT-A---TGC----AGAT--TGC-AATTACA-TTGCCA-GATAATCT-C-TGCA-TTGCGCGTGTTAGCAACTA-G-ATTTT-A-T-------------ATAT--------------T----TTA--------------A------------AATGG-CCGATTTT--GTA-TTTGAAAC-AC-GA--T-CCTCA--A-TTTTGG-CCAA-----T-CT-T-TT-AGTTTCATTCATG-----------GCCACA-ACTG-CT---TGGGAAAAT-T-TCATT-CAAC-ACT-CTA-GA-TCA-TC-AG-CGA--------------ATA-TGA-ATG-TAACT----CTTGAAT---------------AC-ATCAA-CAGTG-GATTT-GTTTT-TCTGCtatcaattaaattcaa
gi|6 : aAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----A---CATG-G----T-------CGA---GCA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------TGAA-------------------A-------AAAA-C----CTA-TTTGCAGACAGCGCGGGGAAACTT-CTTAT--TGA--TCG-GTTGC-AT---G-AC-TAC-TTTC-A-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AATGTCCG-AGAAAT-ATGC-AG----A-TTGC---AATA-----C-TACA-TTGT---T-TTAGCAACTA-G-ATTTT-A-T-------------TCAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCA--GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATACTGTAC-----ACCACA-ACTG-CA---TGGGAAAAT-TTTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTC-GTTAT-TCTGCC-TTTAAAA
gi|7 : tAATCAAAAGCC-AGAAGGG--TCACATAGGCAT----CG----AGGACAT---------------------GTA---------------------TA----AT-----CTATG---C-------TAA--------------------------------------------TG--GGTTGCGCGGAGAAACTT-C------CGA--GCG-ATTGC-AT---G-AT-TAT-TTTC-G-----GTT-----TAGATA--T---AGTTTC---TTCGAAAG-TG-TAAAT-TG--------TT-AACATCCG-CGAAAT-ATGC-AG----A-TTGC---AAT--------TACA-ATGC---C-TTAGCAACTA-G-ATTTT-A-T-------------TTATCTGATTCTGGTTATT----C-A--------------A------------AATGG-C-AATTTT--GTA-T--GAAACCAC-AA--T-C-
gi|8 : AATCAAAGGAC-AGAAGGG--CCACAAAGGCGT----AG----AGCACAC----------------------TA--------C-T-----------------TGG-G-TTATG-ACC-------TAAA-------------------ATT-----AAAA-A-------------AAAA---------AAA-----TTAT--CGA--TTG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---GGTTTC---TTCGAAAA-TA-GAAAT-TGG--CATAGT----------------T-ATGT-AG---------------------------A-TTGC---C-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------C----C-GATTCAGGTTATTCAA------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCA
gi|9 : gGCAT----CG----AGCACATC-A----T------ATTACATGTATATATGATC-TAT---G---CTA----ATGG-G-TTATG-ACC-------TAAAAAAAACCAAAAAACAAAAAA-------AAAACA----CTA-TTTGCAGAATGCGCGTGGAAACTT-CTTAT--AGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TA-----------AAATT-AGC-------GAAAT-ATGT-AG----A-TTGC---AAT--------TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------
blockSeqs : C . ACTC . CAATATTTAAACGATGTATATATATCCTATGCCA GT . GTGAAAA AAAAACCAAAAAACAAAAAA AAACC AT T TGCATTAC CT T A ACA G . T T . ACTAT AT TTA GGA A . A G C ACATCAGAA AA T TTAC T CCAGATATGTCTC A GCGTG C A A . TTATCAAATTCTG CTGATTCTGGTTATTCAA G C TG A TT A AA G C AT A C C G A A A T T CCAACGC T TACAT G G A A T C A T G TATGTATGAGCAAT T G G AGAA AC G A A A G A .
blockSeqs : . . . . CATATTACATGTATATATGATCTATGCTA AG . . ATTAAAAA AAAA G T CTTATC . . . . . . . . . . . . . . . . . . ACATCCGA A . TTAC . CAGATAATCTC . AT . . . . . CCGATTCAGGTTATTCAA C . . . . . . A . T . C . . . . . . T CTGTAC . CCG . . . . . . T . T . . . . . A . . . . . . .
blockSeqs : . . . . CATATTACATGTATAATGATCTATGCTA T . . ATAAAAAA CA A T CTTATC . . . . . . . . . . . . . . . . . . ACGTTCGA A . . . AATAACA . T . . . . . CCAATCTGTGTATTCA . . . . . . . . . T . T . . . . . . . C . TG . . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . CATATTACATGCATATAACGCTA G . . ATT A A T CTTATT . . . . . . . . . . . . . . . . . . ACATCCGA A . . . TCAAAC . T . . . . . TTAGGCCN . . . . . . . . . T . C . . . . . . . T . CG . . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . ATATGATATATGCTATAG G . . A C G T CTTATA . . . . . . . . . . . . . . . . . . ATGTCCGA A . . . AATAC . C . . . . . TTTAA . . . . . . . . . T . T . . . . . . . C . CT . . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . ATATGATATATGCTATAA G . . A A G T TTATC . . . . . . . . . . . . . . . . . . ACATCCGC A . . . GATT . T . . . . . TCGA . . . . . . . . . T . C . . . . . . . C . CT . . . . . . . . . . . . . . A . . . . . .
blockSeqs : . . . . ATATGAATATGCTATAGA G . . A C A T CC . . . . . . . . . . . . . . . . . . TGC A . . . AAT . C . . . . . TTGA . . . . . . . . . T . C . . . . . . . . . CA . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . GGTCGAGCACTATGCTA G . . A A A . . . . . . . . . . . . . . . . . . . . TGC A . . . AAT . C . . . . . CTGA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . GTATA . . . A . . . . . . . . . . . . . . . . . . . . . . GC . . . . AAT . T . . . . . TTGA . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . TACT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TTAA . . . . . . . . . . .
blockSeqs : . . . . . . . . TCGA . . . . . . . . .
blockSeqCons : ** **** G* CTTATC*** ***** ** ACGTCCGA* A* C****
originalCons : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----AGCACATC-A----T------ACGA---GTA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------TAAA-------------------A-------AAAA-A----CTA-TTTGCAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AACGTCCG-AGAAAT-ATGC-AG----A-TTGC---GATA-----C-TACA-TTGC---T-TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATAC----C-----GCCACA-ACTG-CG---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
finalCons : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----AGCACATC-A----T------ACGA---GTA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------TAAA-------------------A-------AAAA-A----CTG-TTTGCAGAATGCGCGGGGAAACTTCTTATC---GA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AACGTCCGA-GAAATA-TGC-AG----A-TTGC---GATA-----C-TACA-TTGCC----TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATAC----C-----GCCACA-ACTG-CG---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
Alignments
lowQualScore : 999999999999999999999999999999999999999999999999999 1111111 555555555555555555555555555 1111111111 111111111 11111 11111 111111111 1111 44444444444444 11111 1111111111111 4444444444444444444444444444444444444444444444444 44444444444 111111 22222222222222
lowQualScore : 4 66 0 7777 7777 444444444444444444444444444444444444444444444444444 666 3 1111111 222222222222222222222222222 9999999999 0 0 2 666666666 55 3 3 666 4 4 4 4 00000 00000 55 777 777 4 3 3 88 0 3 666666666 88 3 5555 3 99999999999999 3 88888 3 3 3 3 8888888888888 5555555555555555555555555555555555555555555555555 6 3 44 3 44 0 3 44 6 3 55 8 3 4 4 4 4 4 8 8 55555555555 4 222222 4 0 4 4 4 4 4 8 4 8 33333333333333 4 4 4 7777 66 4 4 4 4 4 5 6
lowQualScore : . .. . .... .... ................................................... ... . ....... ........................... .......... . . . ......... .. . . ... . . . . ..... ..... .. ... ... . . . .. . . ......... .. . .... . .............. . ..... . . . . ............. ................................................. . . .. . .. . . .. . . .. . . . . . . . . . ........... . ...... . . . . . . . . . . .............. . . . .... .. . . . . . . .
lowQualScore : 4 11 8 1111 1111 888888888888888888888888888888888888888888888888888 444 6 8888888 444444444444444444444444444 6666666666 2 5 1 777777777 00 6 6 444 0 0 0 0 00000 00000 55 000 000 0 6 6 66 5 6 888888888 00 6 5555 3 44444444444444 6 33333 3 3 3 3 3333333333333 5555555555555555555555555555555555555555555555555 7 3 66 3 66 4 3 66 7 3 77 0 2 4 4 4 4 4 9 9 88888888888 4 222222 4 1 4 4 4 0 0 0 0 0 55555555555555 0 0 0 7777 33 4 4 4 4 4 0 7
consensus : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----AGCACATC-A----T------ACGA---GTA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------TAAA-------------------A-------AAAA-A----CTA-TTTGCAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AACGTCCG-AGAAAT-ATGC-AG----A-TTGC---GATA-----C-TACA-TTGC-T---TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATAC----C-----GCCACA-ACTG-CG---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
Reference ( family-5144 ) : NAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----AGCACATC-A----T------ACGA---GTA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------TAAA-------------------A-------AAAA-A----CTG-TTTGCAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AACGTCCG-AGAAAT-ATGC-AG----A-TTGC---GATA-----C-TACA-TTGC-C---TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATAC----C-----GCCACA-ACTG-CG---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCTGCT-TTTAAAA
gi|1 : AATCAA-GGCC-AGAAGGGTTCCACAAAG-CGT----CGCGCAAGCACATC-AATAAT------ACAT---GTA--------TATAT---GAATCTA-----TGG-G-TTATGGACC-------TTAA-------------------T-------ATAA-A----CT--TTTGCAGAGTGCGTTTGGGAACTTTCTTAT--CGA--TCG-ATTGC-AT---G-ACTTAC-TTTC-GAATTAATT-----TCGATA--T---AGTTTT---TTC-AAAA-CGTTAAAT-TGGCCCGAAGTT-AACAT-CG-AAAAAC--TGT-AG----A--TGC---AAT--------TACA-TCGCTT---TTAGCAACTA-A-ATTTT-ACT-------------TTAT--------------C----T-G--------------A------------
gi|1 : G-C-GATTTT--GTA-T--GAAACCAC-AA--T-C-TCA-TAATTCATA-TAAAA-GT-T-AT-CTTT-AGTTTCATTCATA-----T-----GCCACA-ACTG-CA---TGGAAAAAT-TCTCTTT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----ATTGAATA-TTGGATACAAT-AAC-ATCAG-CAGTG-GATTT-GTTAT-TCttctggttttcgaaaatnnnnnnnnnnnnnnnnnnnnnnnnnagcgattttgtatgaaaccacaatctcataattcatataaaagttatctttagtttcattcatatgccacaactgcatggaaaaattctctttcacactctagattcatccgcgaatatgtatgtaactattgaatattggatacaataacatcagcagtggatttgttattc
gi|10 : aatcaaggccagaagggttccacaaagcgtcgcgcaagcacatcaataatacatgtatatatgaatctatgggttatggaccttaatataaacttttgcagagtgcgtttgggaactttcttatcgatcgattgcatgacttactttcgaattaatttcgatatagttttttcaaaacgttaaattggcccgaagttaacatcgaaaaactgtagatgcaattacatcgcttttagcaactaaattttactttatctgattctggttttcgaaaatnnnnnnnnnnnnnnnnnnnnnnnnnaAT--------------T----C-G--------------A------------AATGGGC-GATTTT--G-A-T--GAACCAAC-GAAAC-C-TCAATAATTCATA-TAAAA-ATAT-GC-T-TT-AGTTTCATTCA-AC----CAACGCGCAACA-ACTG-TACATTGGGAGAATGTCTTATTGC-AC-ACTTCTA-GATTCAATC-CGGCAA--------------ATA-TGT-ATGGTCACT----CT-GAATA-TTAGAAACAGT-AACAATCAGACA-TGAGATTTGGTTAT-T-TGCTGTTTCAAA
gi|11 : -TAAAT-TGG--CGAATTT-AACATCCG-AGAAAT-ATAT-AT----A-TTGT---AATAA----CATAGA-TTGTAT---TTATAAATCC-A-ATTCT-G-G-------------TTAT--------------T----T-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TT-------AAA-GT-T-AT-C-TTTAGTTTCATACATAC----------GCCAC---------------GAAAAT-TCTCATT-C-AC-AAT-CTA-GATTCA-TC-TG-TGA--------------ATA-TGT-ATA-TAACT----CTTtatcaattaaattcaa
gi|12 : AGGCGT----CA----AGCACATC-A----T------ATTACATGTATAATGAT-C-TAT---G---CTA----ATGG-T-TTTTG-ACC-------TGAA-------------------A-------AAAA-AAACCCTG-TTTGCAGAAAGCACGGGAAAAC-----------GA--TCG-GTT-------------------TT-G-----ATT-----CATATA--T---AATTCC---TTCGAAAA-TG-TAAAT-TGA--AGAAGTT-AACGTTCG-AGAAAT-ATGC-AG----A-TTattaa
gi|13 : -CTA-GATTCA-TC-CA-CGA--------------ATA-CTT-GGA-GAACAAGAACAAGAACA-TTAGAAACAGT-GAC-ATCAG-CAGTG-GAATT-GCTAT-TCTGCT-TTTACAA
gi|14 : tacacaacatttacatgattgaaaagattataaaattaaaa--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--TGC----------CATA-TAAAA-GG-T-ATAT-TT-AGTTTCATTCATAT----------GTCACA-ACTG-TG---TAAGAAACT-TATCATC-T-AC-ACT-CTA-CATTTA-TC-CG-CAT--------------ATA-TGT-ATG-TAACT----CTtatcaattaaattcaa
gi|15 : aTCAAAGGCC-AGAAGGG--CCACAAAGGCAT----CG----AGCACAT--A----T------ATGA----TA----------TAT---G---CTATAG-ATTG-G-TTATG-ACC-------TAAA-------------------ATTAAAAAAAAA-A----CTA-TTTGCAGAATACGCGGACCAACTT-CTTAT--CGA--TTG-ANGGC-AT---agtt
gi|16 : CT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-TAGTG-GATTT-GTTAT-TCTGCC-TTT
gi|17 : AATCAAAGGCC-TGAAGAG--CCATGAAGGCGT----CG----TGCACATC-cagtagaatatcaattaaattcaat
gi|18 : -TTGC---AAT--------TACA-TCAC-T---TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------C----T-G--------------A------------ggtgtatacatttta
gi|2 : AAATCAACGGCCCAGAAGGG--CCACAA-GGCGT----CG----AGCACATCAA----TATTTAAACGAT--GTATATATATCC-TAT---G---CCA----ATGG-GTTTATG-ACC--------AAC-------------------A-------AAAA-C----CTATTTTGCAGAATGCAC-GGGAAAC-------------------ATTGTAAT---G-AC--ACTTTTT-G-----GTT-----TCGCTAATT---AGTTTC---TTTGAAAA-TG-TAAATATGG--CAAAGTT-AACATCAGAAGAAATAATGCTAG----ATTTGCT--CAAA-----C-TACA-TTGT-T---TTAGCAACTA-GAATTTTAA-TTTATCAAATTCTGTTAT--------------T----T-G--------------A------------CATGGCC-GATTTTTGGTA-T---AAACCACAGA--TAC-TCA-TA-TTTATACTAAAAGGT-T-AT-C--T-AATTT-ATCCAT------------GCCAAA-ACTGCCG---TGGGAAAAT-TCTCATT-C-ACAACT-CTACGATGAATTC-CGTCGA--------------ATATTGTGATG-GAACT----CTTGAATACTTAGAAACAGTGAAC-ATCAG-CAGTG-AATTT-G
gi|3 : aAAATCAAAGAGC-AGAAGGG--TTACAAAGGCGT----TG----AACACATC-A----T------ATTAC--ATG--------CATATAACG---CTA----ATGG---TTATG-ACC-------TAAA-------------------A-------AAA-------CTA-TTTGGAGAATGCGCGGGGAAACTT-CTTAT--CGA--TCGTATTGC-AT---GGAC-TAT-TTTC-G-----GTTACTATTTAATA--T---AGTTTC---TTCGGAAA-TG-TAAAT-TGG--TGAAGTTCAACATCCG-AGAAAT-ATGC-AG----A-T-GA---GAT------T-TACAATT-------------ACTA-G-ATTTT-A-T-------------TTAT--------------C----C-A--------------ATCTGTGTATTCAAATGG---AATTTT--GTAAT--GGAAC-AT-AA--T-C-TCA-TA-T-CATA-TAAAA-GT-T-AT-C-TTTAGTTTCACT---AC----------GCAACATCCTG-CG---TTGGGACAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TCTCA-CGATATGTATGAGCAATACA-TGT-GTG-TAACT----CTTG-ATA-TTAGAAATAGT-AAC-GTCAG-T-GTG-GATTT-GTTATATCTGCT-
gi|4 : GGCAT----CG----AGCACAT--A----T------ATGA----TA----------TAT---G---CTATAA-ATGG-G-TTATG-ACC-------TAAA-------------------ATAAAAAAAAAA-A----CTG-TTTGCAGAATACGCGGGCCAACTT-------------------TGC-AT---T-AC-TAC-TTTC-A-----GTT-----TCGATA--C---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-A---TGC----AGAT--TGC-AATTACA-TTGCCCAGATATGTCTC-TGCA-TTGC-C---TTAGCAACTA-G-ATTTT-A-T-------------ATAT--------------T----T-A--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-T
gi|4 : AACCACG-ATCTC-A-T-------------TGAT--------------TTAGGC-C--------------N------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA--A-TT--------AG-GC-CAAT-CTTT-AGTTTCATTCATG-----C-----GCCACA-ACTG-CT---TGGGAAAAT-TCTCATT-C-AC-ACT-CTA-GATTCA-TC-AG-CGA--------------ATA-TGA-ATG-TAACT----CTTGAAT---------------AC-ATCAA-CAGTG-GATTT-GTTTT-TCTGCT-TTTAAAAtgatttaggccnaatggcgattttgtatgaaaccacgatctcaattaggccaatctttagtttcattcatgcgccacaactgcttgggaaaattctcattcacactctagattcatcagcgaatatgaatgtaactcttgaatacatcaacagtggatttgtttttctgcttttaaaatatcaattaaattcaa
gi|5 : ggcatcgagcacatatatgatatatgctataaatgggttatgacctaaaataaaaaaaaaaactgtttgcagaatacgcgggccaactttgcattactactttcagtttcgatacagtttcttcgaaaatgtaaattggcgaagttatgcagattgcaattacattgcccagatatgtctctgcattgccttagcaactagattttatatatttaaaatggcgattttgtatgaAAATCAAAGGCC-AGAAGGC--TCCCAA-GGCGCACTCCG----AGCACGT--A----T------ATGA---ATA------------T---G---CTATAGAATGGAG-TTATG-ACCGTGAAAATAAA-------------------A-------AAAA-AAAA-CTG-TTTGCAGAATACGCGGCCAA-CTT-TGCATTACTACTTCA-GTTTC-GTACAG-GT-TGT-TTACTG-----GTT-----TCGGTG--CTTAAATTTTGGATTCGAAAAATG-TAAAT-TGGG-CGAA-TT-A---TGC----AGAT--TGC-AATTACA-TTGCCA-GATAATCT-C-TGCA-TTGCGCGTGTTAGCAACTA-G-ATTTT-A-T-------------ATAT--------------T----TTA--------------A------------AATGG-CCGATTTT--GTA-TTTGAAAC-AC-GA--T-CCTCA--A-TTTTGG-CCAA-----T-CT-T-TT-AGTTTCATTCATG-----------GCCACA-ACTG-CT---TGGGAAAAT-T-TCATT-CAAC-ACT-CTA-GA-TCA-TC-AG-CGA--------------ATA-TGA-ATG-TAACT----CTTGAAT---------------AC-ATCAA-CAGTG-GATTT-GTTTT-TCTGCtatcaattaaattcaa
gi|6 : aAAATCAAAGGCC-AGAAGGG--CCACAAAGGCGT----CG----A---CATG-G----T-------CGA---GCA--------C-TAT---G---CTA----ATGG-G-TTATG-ACC-------TGAA-------------------A-------AAAA-C----CTA-TTTGCAGACAGCGCGGGGAAACTT-CTTAT--TGA--TCG-GTTGC-AT---G-AC-TAC-TTTC-A-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TAAAT-TGG--CGAAGTT-AATGTCCG-AGAAAT-ATGC-AG----A-TTGC---AATA-----C-TACA-TTGT-T---TTAGCAACTA-G-ATTTT-A-T-------------TCAT--------------T----C-G--------------A------------AATGG-C-GATTTT--GTA-T--GAAACCA--GA--T-C-TCA-TA-TTCATA-TAAAA-GT-T-AT-C-TT-AGTTTCATTCATACTGTAC-----ACCACA-ACTG-CA---TGGGAAAAT-TTTCATT-C-AC-ACT-CTA-GATTCA-TC-CG-CGA--------------ATA-TGT-ATG-TAACT----CTTGAATA-TTAGAAACAGT-AAC-ATCAG-CAGTG-GATTC-GTTAT-TCTGCC-TTTAAAA
gi|7 : tAATCAAAAGCC-AGAAGGG--TCACATAGGCAT----CG----AGGACAT---------------------GTA---------------------TA----AT-----CTATG---C-------TAA--------------------------------------------TG--GGTTGCGCGGAGAAACTT-C------CGA--GCG-ATTGC-AT---G-AT-TAT-TTTC-G-----GTT-----TAGATA--T---AGTTTC---TTCGAAAG-TG-TAAAT-TG--------TT-AACATCCG-CGAAAT-ATGC-AG----A-TTGC---AAT--------TACA-ATGC-C---TTAGCAACTA-G-ATTTT-A-T-------------TTATCTGATTCTGGTTATT----C-A--------------A------------AATGG-C-AATTTT--GTA-T--GAAACCAC-AA--T-C-
gi|8 : AATCAAAGGAC-AGAAGGG--CCACAAAGGCGT----AG----AGCACAC----------------------TA--------C-T-----------------TGG-G-TTATG-ACC-------TAAA-------------------ATT-----AAAA-A-------------AAAA---------AAA-----TTAT--CGA--TTG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---GGTTTC---TTCGAAAA-TA-GAAAT-TGG--CATAGT----------------T-ATGT-AG---------------------------A-TTGC-C---TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------C----C-GATTCAGGTTATTCAA------------AATGG-C-GATTTT--GTA-T--GAAACCAC-GA--T-C-TCA-TA-TTCA
gi|9 : gGCAT----CG----AGCACATC-A----T------ATTACATGTATATATGATC-TAT---G---CTA----ATGG-G-TTATG-ACC-------TAAAAAAAACCAAAAAACAAAAAA-------AAAACA----CTA-TTTGCAGAATGCGCGTGGAAACTT-CTTAT--AGA--TCG-ATTGC-AT---G-AC-TAC-TTTC-G-----GTT-----TCGATA--T---AGTTTC---TTCGAAAA-TG-TA-----------AAATT-AGC-------GAAAT-ATGT-AG----A-TTGC---AAT--------TACA-TTGC-T---TTAGCAACTA-G-ATTTT-A-T-------------TTAT--------------