lowQualScore : 33333333333 1 1 1 1 2 111111 333333 222222 2 44444444 1 88888888888888888888888 2222222222 1 5555555555555555555555555 11111 44 11 11 111 1 1 888888888 1111111 111 222 1 1 11
lowQualScore : 22222222222 0 2 8 6 6 3 6 444444 0 5 444444 99 111111 0 22222222 0 44444444444444444444444 6 6 1111111111 5 4 7777 4 4 55 4 4 9 4 4444444444444444444444444 44444 4 2 4 00 33 1 4 777 88 000 8 4 5 888888888 4 4444444 4 666 4 444 4 88888 55 4 7 4 3 3 11
lowQualScore : ........... . . . . . . . ...... . . ...... .. ...... . ........ . ....................... . . .......... . . .... . . .. . . . . ......................... ..... . . . .. .. . . ... .. ... . . . ......... . ....... . ... . ... . ..... .. . . . . . ..
lowQualScore : 55555555555 0 2 0 0 5 3 7 444444 7 7 555555 22 555555 0 55555555 0 55555555555555555555555 7 7 9999999999 0 4 9999 5 0 22 0 0 2 0 4444444444444444444444444 33333 0 8 0 66 22 2 0 000 11 000 2 0 0 333333333 2 4444444 4 777 4 888 0 00000 55 0 2 4 3 3 00
consensus : GTTTTATAATTAAANCATGC--NNTTTT-TCACTGTTC-TTTATTAAAAGTTCATTG-AAATGAATTCAATG------TGCATTTTGCT-GCATTCG--AT-TGCATTT--AAGTTTCATTTGGATGTCCATTTGGGTAAATAGAC-----GCAC-CCCTTTAA----------TAGG-CCATC--CCGTCATGGCAGGAGATT-CAAAACAAT-CGAG----------TTT-ATTGGTCTGT-ATAGACGACTATG-AA-GG-TTAGGAGGTGGATG-AAA-TA-T-ACAGGTTGG-TAA-TA--TGA-NA-------------TGT-CTAGAATTAGGGAAT-GAAA-G-GTATT-TGATTG-ACC---AA-TGCC---GGAAAG-TGGAGAAATACACC--ATC--AACCG-------T-GCGCAG---AAA-A-T-CNGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-CCTG--TAGCGT
Reference ( gi|1 ) : GTTTTATAATTAAATCGTGC--TCTTTT-TTACTGTTC-TT-ATTAATAGTTCATTG-AA-TGAATTCAATG------TGCATTTTGCT-GCATTCG--AT--GCATTT--AAATTTCGTTTGGATGTCGATTTGGGTAAATA-AG-----GCAC-CCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATT-CAAAACAAT-CGAG----------TTT-ATTGGTCTGT-ATAGACGACTATG-GA-GG-TTAGGAGGTGGATG-AAG-TA-T-ACAGGTAGG-TAA-T---TGA-AC-------------CGT-TTGAAATTAGGGAAT-GAGA-GTTTATT-AGACTG-ACC---AA-GGCC---GG-AAG-TGGACAAATACA----A----AGCCG-------T-GCGCAG---AAA-A-C-CAGCGCC-A--CAA--ATTG-CACAAAATTTCTA-TGGG-AGG-CCTG--TAGCGTT
gi|14 : GTTTTATGATTAA----TTT--TTTTTT-TCACTGTTC-TTTATCAAAAGTGCTTTG-AAATGAATTCAATG------TGCATTTTGAT-GC
gi|13 : tgattttttttaaaaagtGTTATATAATTAAATCATGA--GATTTTCTCACTGTTCTTT-ATTAGAATTTCATTGAAA-TGAGTTC--TG------TG
gi|5 : tgtttcaaatcaattttaatctagatttagtattctattctattgcattttagaagaatTTTATATATAAAGCATGC--AAGTAT-TCACTATTC-TTTATCAATAGTTCATTG-AAATGAATTCAATA------TGCATTTTGCT-GCATTTG--ATATGCATTT--AAGTT-CATTTGGATGTCCATTTGAGTAAATAGAC-----GCAC-CCCTTTAAATGGCTTTAATAG-----------GTCATGGCTGGAGATT-CAAAACATT-CGAG----------TTT-ACTGGTCTGT-AT---------------GG-TTAGGAGGTGGATG-AAA-TA-T-ACAGGTTGG-CAA-TA--TGA-TA-------------TGT-CTAGAATTAGGGAAT-GAAACG--TATT-TGATTG-ACC---AA-TGCT---GG-AAt
gi|10 : ttttttaaaacgtgAATTAAAACATGCGATTTTTT-TTACTGGTC-TC-ATTAA-AGTTCATTGAAA-TGAATTCAGTG------TGCA-CTAGGT-GCATTCAT-AT--GCATTG--GAGTTT-ATTTGGATGTTCATTTGGGTa
gi|2 : agacattttaatcaagaaatgtgtattctattttattgtattttttaaaaagtgtcttc-TT-ATTAAAAGTTCATTG-AAATGAATTCAATGCAAATGTGCATTTTGCTGGCATTCGCTAT--GCATTT--AAG-TTCA-TTGGATGTCCATTTGGGTAAATT-AG-----ACGCACCCTTTAA----------TAGGACCATC-ACCGTCATGGAAGGAGATT-CAAAGC-AT-CGAG----------TTT--TTGGTCTGT-TTAGACGACTATG-AA-GT-TTAGGAGGTAGATGAAAA-TATT-ACAGGTTGGTTAA-TA--TGA-TA-------------TGT-CT-AGATTAGGGAAT-GAAG-G--TATT-TGATTGAACC---AATAGCTTTGAA-AAG-TGGAcccttttggtaaaatagacgcgc
gi|3 : catagatattatatgcaatttattgctctgatttttctgcgcacggttgatggtgtatttctccactttcaagcaAAAAGTTCATTG-AAATAACTTCAATG------TGCATTTTGCT-GCATTCG--ATATGCATTT--AAGT--CATT-GGATGTC-ATTTGGGTAAATA-AATAGACGCAC-CCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATTCCAAAACAATACGAG----------TTTAATTGGTCTG--ATAGACGACTATG-AA-GG-TTAGGAGG-GGATG-AAGATA-TAACAGGTAGT-AAA-T---TGATAC---------------T-TTAGAATTA-GGAATAGAAA-G-TTATT-AGACTG-ACC---AA-TGCC---GGAAAG-TGGAGAAATACA----CCGTTAACCG-------T-GCGCAG---AAATA-T-CAGCGGC-AAGCAAATATTGCCACAAAATTTCTA-T-GG-AGG-ACTG--TAGga
gi|4 : GAATTCAATG------TGCATTTTGCT-GCATTCG--ATTTGCATTTTAAAAGTTCATGTAGATGTACATTTGGGTAAATAGAC-----GCAC-CCCTTTAA----------CAG----------C-TCATGACAGGAGAT--------AA----AG----------TTT-ATTGGTCTGT-ATAGACGACTATG-AAGGG-TTAGGAGTTGGATG-AAA-TT-T-ACAGGTTGG-TAA-TA--TAA-TA-------------AGT-CTAGAATTAGGGAAT-GAAA-G-GTATT-TGATTG-ACC---AA-TGAT---GGAAAG-TGGAGAAGTACACCTTC----AACCG-------T-GCACAG---AGA-ATT-CTGTGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGGAAGA-CCTG--TAGCGT
gi|15 : ------TGCATTTCGGT-GTATTCGATAT--GCATTT--AAG-TTCATTTGGGT
gi|6 : GTCATGGCAGGAGATT-CAAAACAAT-CGAGTTTATTGGTCTTT-ATTGGTCTGT-ATAGACGACAATG-AA-GGATTAGGAGGTGGATG-AAA-TA-T-ACAGGTTGG-TAATT---TGA----------------TGT-CTAGAATTAGGGAAT-GAAA-G-GTATT-TGATTG-ACC---AA-TGCTG--GG-AAG-TGGAGAAATACACC--ATC--AACCG-------T-GCGCAGA--AAA-A-T-CAGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-a
gi|7 : aGATT-CAAAACAAT-CGAG----------TTT-GTTGGTCTGTTACAGACGACTATG-GA-GGGTTAGGAGGTGAATG-AAG-TA-T-ACAGGTAGG-TAAAT---TGA-AC-------------CGT-TTAGAATTAGGGAAT-GAGA-G-TTATTGAGACTG-ACCATGAA-TGCC---GGAAAG-TGGAGATATATA----C----GGCCGTCAACCAT-GCGCAGA--AAA-A-T-CAGCACT-A--CAA--ATTG-CACAAAATTTCTA-TGa
gi|8 : G----------TTT-ATTGGTCTGT-ATAGACGACTATGAGG-GA-TTAGGAGGTGGATG-AAA-TA-T--TAGGTTGG-TCA-CATGTGA-TA-------------TGTATAGGAATTAGTGAAT-GAAA-G-GCATT-TGATTG-AC-----A-TGCT---GG-AAG-TGGAGAAATACACATCA----CACCG-------TGGCGCAGGAAAAG-A-T-CGGGACCGA--CAA--ATTG-CACAAAATGTCTACTGGG-AGGACCTG--
gi|11 : ----------TTC-ATTGGATTTC-AAAAAC--CTATG-GA-GG-TTAGGAGGTG-ATG-AAG-TA-T-ACAGGTAGG-AAA-T---TGA-AC-------------CGT-TAG-AATTAGGGAAT---GA-ATATATT-AGACTG-ACC---AA-TGCC---GGAAAG-TGGAGGAATACACCGTC----AACCG-------T-GCGTAG---A-------------------AA--ATTG-CACAAAATTTCTA-TGGG-AGGACCTG--TAGCG
gi|17 : TCTGT-ATACACGACTATG-AAGGG-TTAGGA
gi|9 : GACTATG-AA-GGGTTAGGAGGTGGATG-AAA-TA-T-ATAGATTGG-TAA-TA--TAA-ATAATTACATGTATATGT-CTAGAATTAAGAAAC-AAAA-GGT-ATT-TGATTG-ACT---AA-TGCC---GG-AAAATGGAGAAATACACC--ATC--AACCT-------T-GCGCAG---AAA-A-TTCTGCGCT-G--TAA--ATTG-CACCAAATGTCTA-TGGGAAGA-CCTGTATAGCGT
gi|12 : taATG-AA-GGGTTAGGAGGTGGATG-AAA-TA-T-ACAGGTTGG-TAA-TA--TAG-TA-------------TGT-CTAGAATTAGGGAAT-GAAA-G-GTATT-TGATTG-ACC---AA-TGCC---GGAAAG-TGGAGAAATACACC--ATC--AACCG-------T-GCACAG---AAA-ATT-CTGCGCT-G--TTA--ATTG-CACAAA
gi|2 : ---GA-AAG-TGGAGAAATACACC--ATC--AACCG-------T-GCGCAG---AAA-AAT-CAGAGCA-A--TAA--ATTG-CATATAATATCTA-TG
gi|16 : GCGCC-A--TAA--ATTG-CACACAATGTCTA-TAGaagcattattaaaagttcattgaaatgaattcaatgcaaatgtgcattttgctggcattcgctatgcatttaagttcattggatgtccatttgggtaaattagacgcaccctttaataggaccatcaccgtcatggaaggagattcaaagcatcgagtttttggtctgtttagacgactatgaagtttaggaggtagatgaaaatattacaggttggttaatatgatatgtctagattagggaatgaaggtatttgattgaaccaatagctttgaaaagtggaga
Alignments
lowQualScore : 111 111111 2 111 1 3333333333333333 444444444444 1111111111 2 22222222222222 111 1 1 1
lowQualScore : 44 22 6 99 111 7 222222 5 8 5 000 2 5 5 5 6666666666666666 6 111111111111 5 5 4 7777777777 4 3 0 3 3 3 3 3 3 3 8 44444444444444 1 3 3 3 3 33 3 555 3 44 0 777 4 4 999 4 0 2 3 55 55 3 1 4 1 1 99
lowQualScore : .. .. . .. ... . ...... . . . ... . . . . ................ . ............ . . . .......... . . . . . . . . . . . .............. . . . . . .. . ... . .. . ... . . ... . . . . .. .. . . . . . ..
lowQualScore : 66 00 7 22 777 3 888888 0 6 7 000 0 0 0 2 8888888888888888 7 888888888888 7 7 4 5555555555 0 3 0 6 6 6 6 6 6 6 4 55555555555555 2 6 6 6 6 99 6 888 3 66 4 000 0 0 000 0 9 3 6 00 00 6 6 0 4 4 22
consensus : GTTTTATAATTAAANCATGCGNTTTT-TC--ACTGTT---CTTTATTAAAAGTTCATTGAAATGAATTCAATG------TGCATTTTGCT-GCATTCGATAT-GCATTT---AAGTTTCATTTGGATGTCCATTTGGG----T-----------AAA-TAGACGCACCCCTTTAATAGG-CC---ATCTC-CCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGAA-GGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATGAT-------------ACGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTCA-ACCGT-GCGCAG---AAA-A-TCNGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-CCTG--TAGCGT
Reference ( family-5117 ) : GTTTTATAATTAAANCATGCNNTTTT-TC--ACTGTT---CTTTATTAAAAGTTCATTGAAATGAATTCAATG------TGCATTTTGCT-GCATTCGAT-T-GCATTT---AAGTTTCATTTGGATGTCCATTTGGG----T-----------AAA-TAGACGCACCCCTTTAATAGG-CC---A--TC-CCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGAA-GG-TTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATGAN-------------ATGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCATCA-ACCGT-GCGCAG---AAA-A-TCNGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-CCTG--TAGCGT
gi|1 : GTTTTATAATTAAATCGTGCTCTTTT-TT--ACTGTT---CTT-ATTAATAGTTCATTGAA-TGAATTCAATG------TGCATTTTGCT-GCATTCGA--T-GCATTT---AAATTTCGTTTGGATGTCGATTTGGG----T-----------AAA-TA-AGGCACCCCTTTAATAGG-CC---ATCTC-CCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGGA-GG-TTAGGAGGTGGATG-AA-GTA-T-ACAGGTAGG-T-A-AT-TGAA-------------CCGTTTG-AAATTAGGGAAT-GAG-AGTTTATTA-GACTG-ACC---AAG-GC--CGG-AAGTGGACAAATACA-----A--A-GCCGT-GCGCAG---AAA-A-CCAGCGCC-A--CAA--ATTG-CACAAAATTTCTA-TGGG-AGG-CCTG--TAGCGT
gi|10 : AATTAAAACATGCGATTTT-TTTTACTGGT---CTC-ATTAAA-GTTCATTGAAATGAATTCAGTG------TGCA-CTAGGT-GCATTC-ATAT-GCATTG---GAGTTT-ATTTGGATGTTCATTTGGG----TCCCTTTTGGTAAAA-TAGACGCGCt
gi|11 : agacattttaatcaagaaatgtgtattctattttattgtattttttaaaaagtgtcttcTTC-ATTGG----------ATTTC-AAAAAC--CTATGGA-GG-TTAGGAGGTG-ATG-AA-GTA-T-ACAGGTAGG-A-A-AT-TGAA-------------CCGT-TA-GAATTAGGGAAT-GAATA---TATTA-GACTG-ACC---AAT-GC--CGGAAAGTGGAGGAATACA---CCGTCA-ACCGT-GCGTAG---A------------------AA--ATTG-CACAAAATTTCTA-TGGG-AGGACCTG--TAGCG
gi|12 : ATGAA-GGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATAGT-------------ATGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCATCA-ACCGT-GCACAG---AAA-ATTCTGCGCT-G--TTA--ATTG-CACAAA
gi|13 : GTTATATAATTAAATCATGAGATTTTCTC--ACTGTT---CTTTATTAGAATTTCATTGAAATGAGTTC--TG------TG
gi|14 : tgtttcaaatcaattttaatctagatttagtattctattctattgcattttagaagaatGTTTTATGATTAA----TTTTTTTTT-TC--ACTGTT---CTTTATCAAAAGTGCTTTGAAATGAATTCAATG------TGCATTTTGAT-GCt
gi|15 : tgattttttttaaaaagt------TGCATTTCGGT-GTATTCGATAT-GCATTT---AAGTT-CATTTGGGT
gi|16 : -TCTGCGCC-A--TAA--ATTG-CACACAATGTCTA-TAGa
gi|17 : t----------TCTGT-ATACACGACTATGAAGGG-TTAGGA
gi|2 : ---AAT-GC--TTGAAAGTGGAGAAATACA---CCATCA-ACCGT-GCGCAGA--AAA-A-TCAGAGCA-A--TAA--ATTG-CATATAATATCTA-TG
gi|2 : TGTATTTCT-CC--ACTTTCAAGCATTATTAAAAGTTCATTGAAATGAATTCAATGCAAATGTGCATTTTGCTGGCATTCGCTAT-GCATTT---AAG-TTCA-TTGGATGTCCATTTGGG----T-----------AAATTAGACGCA-CCCTTTAATAGGACC---A--TCACCGTCATGGAAGGAGATT-CAAAGC-AT-CGAGTTT--TTGG----------TCTGT-TTAGACGACTATGAA-GT-TTAGGAGGTAGATGAAA-ATATT-ACAGGTTGGTT-A-ATATGAT-------------ATGTCTA-G-ATTAGGGAAT-G-A-AG-GTATTT-GATTGAACC---AATAGCTTTGAAAAGTGGAGAattaaaagttcattgaaatgaattcaatgcaaatgtgcattttgctggcattcgctatgcatttaagttcattggatgtccatttgggtaaattagacgcaccctttaataggaccatcaccgtcatggaaggagattcaaagcatcgagtttttggtctgtttagacgactatgaagtttaggaggtagatgaaaatattacaggttggttaatatgatatgtctagattagggaatgaaggtatttgattgaaccaatagctttgaaaagtggaga
gi|3 : catagatattatatgcaatttattgctctgatttttctgcgcacggttgatggAAAAGTTCATTGAAATAACTTCAATG------TGCATTTTGCT-GCATTCGATAT-GCATTT---AAG--TCA-TTGGATGT-CATTTGGGTAAAT-----------AAA-TAGACGCACCCCTTTAATAGG-CC---ATCTC-CCGTCATGGCAGGAGATTCCAAAACAATACGAGTTTAATTGG----------TCTG--ATAGACGACTATGAA-GG-TTAGGAGG-GGATG-AAGATA-TAACAGG-TAG-T-A-AATTGAT-------------AC-TTTA-GAATTA-GGAATAGAA-AG-TTATTA-GACTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTTA-ACCGT-GCGCAG---AAATA-TCAGCGGC-AAGCAAATATTGCCACAAAATTTCTA-T-GG-AGG-ACTG--TAG
gi|4 : GAATTCAATG------TGCATTTTGCT-GCATTCGAT-TTGCATTTTAAAAGTT-CATGTAGATGTACATTTGGG----T-----------AAA-TAGACGCACCCCTTTAACAG--------------C-TCATGACAGGAGAT--------AA----AGTTT-ATTGG----------TCTGT-ATAGACGACTATGAA-GGGTTAGGAGTTGGATG-AA-ATT-T-ACAGGTTGG-T-A-ATATAAT-------------AAGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GA--TGGAAAGTGGAGAAGTACA---CCTTCA-ACCGT-GCACAG---AGA-ATTCTGTGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGGAAGA-CCTG--TAGCGT
gi|5 : TTTATATATAAAGCATGCAAGTAT-TC--ACTATT---CTTTATCAATAGTTCATTGAAATGAATTCAATA------TGCATTTTGCT-GCATTTGATAT-GCATTT---AAG-TTCATTTGGATGTCCATTTGAG----T-----------AAA-TAGACGCACCCCTTTAAATGG-CTTTAA--T--AGGTCATGGCTGGAGATT-CAAAACATT-CGAGTTT-ACTGG----------TCTGT-AT--------------GG-TTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-C-A-ATATGAT-------------ATGTCTA-GAATTAGGGAAT-GAA-AC-GTATTT-GATTG-ACC---AAT-GC--TGGAAA
gi|6 : ttttttaaaacgtgGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGGTCTTTATTGGTCTGT-ATAGACGACAATGAA-GGATTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATTTGA---------------TGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--TGGGAAGTGGAGAAATACA---CCATCA-ACCGT-GCGCAGA--AAA-A-TCAGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-
gi|7 : aGATT-CAAAACAAT-CGAGTTT-GTTGG----------TCTGTTACAGACGACTATGGA-GGGTTAGGAGGTGAATG-AA-GTA-T-ACAGGTAGG-T-A-AATTGAA-------------CCGTTTA-GAATTAGGGAAT-GAG-AG-TTATTGAGACTG-ACCATGAAT-GC--CGGAAAGTGGAGATATATACGGCCGTCA-ACCAT-GCGCAGA--AAA-A-TCAGCACT-A--CAA--ATTG-CACAAAATTTCTA-TGa
gi|8 : GTTT-ATTGG----------TCTGT-ATAGACGACTATGAG-GGATTAGGAGGTGGATG-AA-ATA-T--TAGGTTGG-TCACATGTGAT-------------ATGTATAGGAATTAGTGAAT-GAA-AG-GCATTT-GATTG-AC-----AT-GC--TGG-AAGTGGAGAAATACA----CATCACACCGTGGCGCAGGAAAAG-A-TCGGGACCGA--CAA--ATTG-CACAAAATGTCTACTGGG-AGGACCTG--
gi|9 : GACTATGAA-GGGTTAGGAGGTGGATG-AA-ATA-T-ATAGATTGG-T-A-ATATAAATAATTACATGTATATGTCTA-GAATTAAGAAAC-AAA-AG-GTATTT-GATTG-ACT---AAT-GC--CGGAAAATGGAGAAATACA---CCATCA-ACCTT-GCGCAG---AAA-ATTCTGCGCT-G--TAA--ATTG-CACCAAATGTCTA-TGGGAAGA-CCTGTATAGCGT
Alignments
lowQualScore : 111 111111 111 1 3333333333333333 4444444444444444444444 1111111111 2222222222222222 111 1 1 1
lowQualScore : 44 44 6 99 111 7 222222 5 1 000 5 2 5 6666666666666666 6 4444444444444444444444 5 5 4 7777777777 4 4 3 3 3 3 3 3 3 8 1111111111111111 1 3 3 3 3 33 3 555 3 44 0 777 3 4 4 999 4 0 2 3 55 55 3 1 4 1 1 99
lowQualScore : .. .. . .. ... . ...... . . ... . . . ................ . ...................... . . . .......... . . . . . . . . . . ................ . . . . . .. . ... . .. . ... . . . ... . . . . .. .. . . . . . ..
lowQualScore : 66 77 7 22 777 3 888888 0 7 000 0 0 2 8888888888888888 7 6666666666666666666666 7 7 4 5555555555 0 6 6 6 6 6 6 6 6 4 9999999999999999 2 6 6 6 6 99 6 888 3 66 4 000 0 0 0 000 0 9 3 6 00 00 6 6 0 4 4 22
consensus : GTTTTATAATTAAANCATGCGNTTTT-TC--ACTGTT---CTTTATTAAAAGTTCATTGAAATGAATTCAATG------TGCATTTTGCTG-CATTCGATATGCATTT---AAGTTTCATTTGGATGTCCATTTGGG----T-----------AAA-TAGACGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATGA-------------TACGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTCA-ACCGT-GCGCAG---AAA-A-TCNGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-CCTG--TAGCGT
Reference ( family-5117 ) : GTTTTATAATTAAANCATGCGNTTTT-TC--ACTGTT---CTTTATTAAAAGTTCATTGAAATGAATTCAATG------TGCATTTTGCTG-CATTCGATATGCATTT---AAGTTTCATTTGGATGTCCATTTGGG----T-----------AAA-TAGACGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATGA-------------TACGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTCA-ACCGT-GCGCAG---AAA-A-TCNGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-CCTG--TAGCGT
gi|1 : GTTTTATAATTAAATCGTGCTCTTTT-TT--ACTGTT---CTT-ATTAATAGTTCATTGAA-TGAATTCAATG------TGCATTTTGCTG-CATTCGAT--GCATTT---AAATTTCGTTTGGATGTCGATTTGGG----T-----------AAA-TA-AGGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGGA-GGTTAGGAGGTGGATG-AA-GTA-T-ACAGGTAGG-T-A-AT-TGA-------------ACCGTTTG-AAATTAGGGAAT-GAG-AGTTTATTA-GACTG-ACC---AAG-GC--CGG-AAGTGGACAAATACA-------AA-GCCGT-GCGCAG---AAA-A-CCAGCGCC-A--CAA--ATTG-CACAAAATTTCTA-TGGG-AGG-CCTG--TAGCGT
gi|10 : AATTAAAACATGCGATTTT-TTTTACTGGT---CTC-ATTAAA-GTTCATTGAAATGAATTCAGTG------TGCA-CTAGGTG-CATTC-ATATGCATTG---GAGTTT-ATTTGGATGTTCATTTGGG----TCCCTTTTGGTAAAA-TAGACGCGCt
gi|11 : agacattttaatcaagaaatgtgtattctattttattgtattttttaaaaagtgtcttcTTC-ATTGG----------ATTTC-AAAAAC--CTATGGAGG-TTAGGAGGTG-ATG-AA-GTA-T-ACAGGTAGG-A-A-AT-TGA-------------ACCGT-TA-GAATTAGGGAAT-GAATA---TATTA-GACTG-ACC---AAT-GC--CGGAAAGTGGAGGAATACA---CCGTCA-ACCGT-GCGTAG---A------------------AA--ATTG-CACAAAATTTCTA-TGGG-AGGACCTG--TAGCG
gi|12 : ATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATAG-------------TATGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCATCA-ACCGT-GCACAG---AAA-ATTCTGCGCT-G--TTA--ATTG-CACAAA
gi|13 : GTTATATAATTAAATCATGAGATTTTCTC--ACTGTT---CTTTATTAGAATTTCATTGAAATGAGTTC--TG------TG
gi|14 : tgtttcaaatcaattttaatctagatttagtattctattctattgcattttagaagaatGTTTTATGATTAA----TTTTTTTTT-TC--ACTGTT---CTTTATCAAAAGTGCTTTGAAATGAATTCAATG------TGCATTTTGATG-Ct
gi|15 : tgattttttttaaaaagt------TGCATTTCGGTG-TATTCGATATGCATTT---AAG-TTCATTTGGGT
gi|16 : -TCTGCGCC-A--TAA--ATTG-CACACAATGTCTA-TAGa
gi|17 : t----------TCTGT-ATACACGACTATGAAGGGTTAGGA
gi|2 : ---AAT-GC--TTGAAAGTGGAGAAATACA---CCATCA-ACCGT-GCGCAGA--AAA-A-TCAGAGCA-A--TAA--ATTG-CATATAATATCTA-TG
gi|2 : TGTATTTCT-CC--ACTTTCAAGCATTATTAAAAGTTCATTGAAATGAATTCAATGCAAATGTGCATTTTGCTGGCATTCGCTATGCATTT---AAGTT-CATT-GGATGTCCATTTGGG----T-----------AAATTAGACGCA-CCCTTTAA----------TAGGACCATC-ACCGTCATGGAAGGAGATT-CAAAGC-AT-CGAGTTT--TTGG----------TCTGT-TTAGACGACTATGAA-GTTTAGGAGGTAGATGAAA-ATATT-ACAGGTTGGTT-A-ATATGA-------------TATGTCTA-G-ATTAGGGAAT-G-A-AG-GTATTT-GATTGAACC---AATAGCTTTGAAAAGTGGAGAattaaaagttcattgaaatgaattcaatgcaaatgtgcattttgctggcattcgctatgcatttaagttcattggatgtccatttgggtaaattagacgcaccctttaataggaccatcaccgtcatggaaggagattcaaagcatcgagtttttggtctgtttagacgactatgaagtttaggaggtagatgaaaatattacaggttggttaatatgatatgtctagattagggaatgaaggtatttgattgaaccaatagctttgaaaagtggaga
gi|3 : catagatattatatgcaatttattgctctgatttttctgcgcacggttgatggAAAAGTTCATTGAAATAACTTCAATG------TGCATTTTGCTG-CATTCGATATGCATTT---AAG--TCA-TTGGATGT-CATTTGGGTAAAT-----------AAA-TAGACGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATTCCAAAACAATACGAGTTTAATTGG----------TCTG--ATAGACGACTATGAA-GGTTAGGAGG-GGATG-AAGATA-TAACAGG-TAG-T-A-AATTGA-------------TAC-TTTA-GAATTA-GGAATAGAA-AG-TTATTA-GACTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTTA-ACCGT-GCGCAG---AAATA-TCAGCGGC-AAGCAAATATTGCCACAAAATTTCTA-T-GG-AGG-ACTG--TAG
gi|4 : GAATTCAATG------TGCATTTTGCTG-CATTCGATTTGCATTTTAAAAGTT-CATGTAGATGTACATTTGGG----T-----------AAA-TAGACGCACCCCTTTAA----------CAG----------C-TCATGACAGGAGAT--------AA----AGTTT-ATTGG----------TCTGT-ATAGACGACTATGAAGGGTTAGGAGTTGGATG-AA-ATT-T-ACAGGTTGG-T-A-ATATAA-------------TAAGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GA--TGGAAAGTGGAGAAGTACA---CCTTCA-ACCGT-GCACAG---AGA-ATTCTGTGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGGAAGA-CCTG--TAGCGT
gi|5 : TTTATATATAAAGCATGCAAGTAT-TC--ACTATT---CTTTATCAATAGTTCATTGAAATGAATTCAATA------TGCATTTTGCTG-CATTTGATATGCATTT---AAGTT-CATTTGGATGTCCATTTGAG----T-----------AAA-TAGACGCACCCCTTTAAATGGCTTTAATAG-----------GTCATGGCTGGAGATT-CAAAACATT-CGAGTTT-ACTGG----------TCTGT-AT--------------GGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-C-A-ATATGA-------------TATGTCTA-GAATTAGGGAAT-GAA-AC-GTATTT-GATTG-ACC---AAT-GC--TGGAAA
gi|6 : ttttttaaaacgtgGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGGTCTTTATTGGTCTGT-ATAGACGACAATGAAGGATTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATTTGA-------------T--GTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--TGGGAAGTGGAGAAATACA---CCATCA-ACCGT-GCGCAGA--AAA-A-TCAGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-
gi|7 : aGATT-CAAAACAAT-CGAGTTT-GTTGG----------TCTGTTACAGACGACTATGGAGGGTTAGGAGGTGAATG-AA-GTA-T-ACAGGTAGG-T-A-AATTGA-------------ACCGTTTA-GAATTAGGGAAT-GAG-AG-TTATTGAGACTG-ACCATGAAT-GC--CGGAAAGTGGAGATATATACGGCCGTCA-ACCAT-GCGCAGA--AAA-A-TCAGCACT-A--CAA--ATTG-CACAAAATTTCTA-TGa
gi|8 : GTTT-ATTGG----------TCTGT-ATAGACGACTATGAGGGATTAGGAGGTGGATG-AA-ATA-T--TAGGTTGG-TCACATGTGA-------------TATGTATAGGAATTAGTGAAT-GAA-AG-GCATTT-GATTG-AC-----AT-GC--TGG-AAGTGGAGAAATACA----CATCACACCGTGGCGCAGGAAAAG-A-TCGGGACCGA--CAA--ATTG-CACAAAATGTCTACTGGG-AGGACCTG--
gi|9 : GACTATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ATAGATTGG-T-A-ATATAAATAATTACATGTATATGTCTA-GAATTAAGAAAC-AAA-AG-GTATTT-GATTG-ACT---AAT-GC--CGGAAAATGGAGAAATACA---CCATCA-ACCTT-GCGCAG---AAA-ATTCTGCGCT-G--TAA--ATTG-CACCAAATGTCTA-TGGGAAGA-CCTGTATAGCGT
Alignments
lowQualScore : 111 111111 111 1 3333333333333333 4444444444444444444444 1111111111 2222222222222222 111 1 1 1
lowQualScore : 44 44 6 99 111 7 222222 5 1 000 5 2 5 6666666666666666 6 4444444444444444444444 5 5 4 7777777777 4 4 3 3 3 3 3 3 3 8 1111111111111111 1 3 3 3 3 33 3 555 3 44 0 777 3 4 4 999 4 0 2 3 55 55 3 1 4 1 1 99
lowQualScore : .. .. . .. ... . ...... . . ... . . . ................ . ...................... . . . .......... . . . . . . . . . . ................ . . . . . .. . ... . .. . ... . . . ... . . . . .. .. . . . . . ..
lowQualScore : 66 77 7 22 777 3 888888 0 7 000 0 0 2 8888888888888888 7 6666666666666666666666 7 7 4 5555555555 0 6 6 6 6 6 6 6 6 4 9999999999999999 2 6 6 6 6 99 6 888 3 66 4 000 0 0 0 000 0 9 3 6 00 00 6 6 0 4 4 22
consensus : GTTTTATAATTAAANCATGCGNTTTT-TC--ACTGTT---CTTTATTAAAAGTTCATTGAAATGAATTCAATG------TGCATTTTGCTG-CATTCGATATGCATTT---AAGTTTCATTTGGATGTCCATTTGGG----T-----------AAA-TAGACGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATGA-------------TACGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTCA-ACCGT-GCGCAG---AAA-A-TCNGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-CCTG--TAGCGT
Reference ( family-5117 ) : GTTTTATAATTAAANCATGCGNTTTT-TC--ACTGTT---CTTTATTAAAAGTTCATTGAAATGAATTCAATG------TGCATTTTGCTG-CATTCGATATGCATTT---AAGTTTCATTTGGATGTCCATTTGGG----T-----------AAA-TAGACGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATGA-------------TACGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTCA-ACCGT-GCGCAG---AAA-A-TCNGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-CCTG--TAGCGT
gi|1 : GTTTTATAATTAAATCGTGCTCTTTT-TT--ACTGTT---CTT-ATTAATAGTTCATTGAA-TGAATTCAATG------TGCATTTTGCTG-CATTCGAT--GCATTT---AAATTTCGTTTGGATGTCGATTTGGG----T-----------AAA-TA-AGGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGGA-GGTTAGGAGGTGGATG-AA-GTA-T-ACAGGTAGG-T-A-AT-TGA-------------ACCGTTTG-AAATTAGGGAAT-GAG-AGTTTATTA-GACTG-ACC---AAG-GC--CGG-AAGTGGACAAATACA-------AA-GCCGT-GCGCAG---AAA-A-CCAGCGCC-A--CAA--ATTG-CACAAAATTTCTA-TGGG-AGG-CCTG--TAGCGT
gi|10 : AATTAAAACATGCGATTTT-TTTTACTGGT---CTC-ATTAAA-GTTCATTGAAATGAATTCAGTG------TGCA-CTAGGTG-CATTC-ATATGCATTG---GAGTTT-ATTTGGATGTTCATTTGGG----TCCCTTTTGGTAAAA-TAGACGCGCt
gi|11 : agacattttaatcaagaaatgtgtattctattttattgtattttttaaaaagtgtcttcTTC-ATTGG----------ATTTC-AAAAAC--CTATGGAGG-TTAGGAGGTG-ATG-AA-GTA-T-ACAGGTAGG-A-A-AT-TGA-------------ACCGT-TA-GAATTAGGGAAT-GAATA---TATTA-GACTG-ACC---AAT-GC--CGGAAAGTGGAGGAATACA---CCGTCA-ACCGT-GCGTAG---A------------------AA--ATTG-CACAAAATTTCTA-TGGG-AGGACCTG--TAGCG
gi|12 : ATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATAG-------------TATGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCATCA-ACCGT-GCACAG---AAA-ATTCTGCGCT-G--TTA--ATTG-CACAAA
gi|13 : GTTATATAATTAAATCATGAGATTTTCTC--ACTGTT---CTTTATTAGAATTTCATTGAAATGAGTTC--TG------TG
gi|14 : tgtttcaaatcaattttaatctagatttagtattctattctattgcattttagaagaatGTTTTATGATTAA----TTTTTTTTT-TC--ACTGTT---CTTTATCAAAAGTGCTTTGAAATGAATTCAATG------TGCATTTTGATG-Ct
gi|15 : tgattttttttaaaaagt------TGCATTTCGGTG-TATTCGATATGCATTT---AAG-TTCATTTGGGT
gi|16 : -TCTGCGCC-A--TAA--ATTG-CACACAATGTCTA-TAGa
gi|17 : t----------TCTGT-ATACACGACTATGAAGGGTTAGGA
gi|2 : ---AAT-GC--TTGAAAGTGGAGAAATACA---CCATCA-ACCGT-GCGCAGA--AAA-A-TCAGAGCA-A--TAA--ATTG-CATATAATATCTA-TG
gi|2 : TGTATTTCT-CC--ACTTTCAAGCATTATTAAAAGTTCATTGAAATGAATTCAATGCAAATGTGCATTTTGCTGGCATTCGCTATGCATTT---AAGTT-CATT-GGATGTCCATTTGGG----T-----------AAATTAGACGCA-CCCTTTAA----------TAGGACCATC-ACCGTCATGGAAGGAGATT-CAAAGC-AT-CGAGTTT--TTGG----------TCTGT-TTAGACGACTATGAA-GTTTAGGAGGTAGATGAAA-ATATT-ACAGGTTGGTT-A-ATATGA-------------TATGTCTA-G-ATTAGGGAAT-G-A-AG-GTATTT-GATTGAACC---AATAGCTTTGAAAAGTGGAGAattaaaagttcattgaaatgaattcaatgcaaatgtgcattttgctggcattcgctatgcatttaagttcattggatgtccatttgggtaaattagacgcaccctttaataggaccatcaccgtcatggaaggagattcaaagcatcgagtttttggtctgtttagacgactatgaagtttaggaggtagatgaaaatattacaggttggttaatatgatatgtctagattagggaatgaaggtatttgattgaaccaatagctttgaaaagtggaga
gi|3 : catagatattatatgcaatttattgctctgatttttctgcgcacggttgatggAAAAGTTCATTGAAATAACTTCAATG------TGCATTTTGCTG-CATTCGATATGCATTT---AAG--TCA-TTGGATGT-CATTTGGGTAAAT-----------AAA-TAGACGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATTCCAAAACAATACGAGTTTAATTGG----------TCTG--ATAGACGACTATGAA-GGTTAGGAGG-GGATG-AAGATA-TAACAGG-TAG-T-A-AATTGA-------------TAC-TTTA-GAATTA-GGAATAGAA-AG-TTATTA-GACTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTTA-ACCGT-GCGCAG---AAATA-TCAGCGGC-AAGCAAATATTGCCACAAAATTTCTA-T-GG-AGG-ACTG--TAG
gi|4 : GAATTCAATG------TGCATTTTGCTG-CATTCGATTTGCATTTTAAAAGTT-CATGTAGATGTACATTTGGG----T-----------AAA-TAGACGCACCCCTTTAA----------CAG----------C-TCATGACAGGAGAT--------AA----AGTTT-ATTGG----------TCTGT-ATAGACGACTATGAAGGGTTAGGAGTTGGATG-AA-ATT-T-ACAGGTTGG-T-A-ATATAA-------------TAAGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GA--TGGAAAGTGGAGAAGTACA---CCTTCA-ACCGT-GCACAG---AGA-ATTCTGTGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGGAAGA-CCTG--TAGCGT
gi|5 : TTTATATATAAAGCATGCAAGTAT-TC--ACTATT---CTTTATCAATAGTTCATTGAAATGAATTCAATA------TGCATTTTGCTG-CATTTGATATGCATTT---AAGTT-CATTTGGATGTCCATTTGAG----T-----------AAA-TAGACGCACCCCTTTAAATGGCTTTAATAG-----------GTCATGGCTGGAGATT-CAAAACATT-CGAGTTT-ACTGG----------TCTGT-AT--------------GGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-C-A-ATATGA-------------TATGTCTA-GAATTAGGGAAT-GAA-AC-GTATTT-GATTG-ACC---AAT-GC--TGGAAA
gi|6 : ttttttaaaacgtgGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGGTCTTTATTGGTCTGT-ATAGACGACAATGAAGGATTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATTTGA-------------T--GTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--TGGGAAGTGGAGAAATACA---CCATCA-ACCGT-GCGCAGA--AAA-A-TCAGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-
gi|7 : aGATT-CAAAACAAT-CGAGTTT-GTTGG----------TCTGTTACAGACGACTATGGAGGGTTAGGAGGTGAATG-AA-GTA-T-ACAGGTAGG-T-A-AATTGA-------------ACCGTTTA-GAATTAGGGAAT-GAG-AG-TTATTGAGACTG-ACCATGAAT-GC--CGGAAAGTGGAGATATATACGGCCGTCA-ACCAT-GCGCAGA--AAA-A-TCAGCACT-A--CAA--ATTG-CACAAAATTTCTA-TGa
gi|8 : GTTT-ATTGG----------TCTGT-ATAGACGACTATGAGGGATTAGGAGGTGGATG-AA-ATA-T--TAGGTTGG-TCACATGTGA-------------TATGTATAGGAATTAGTGAAT-GAA-AG-GCATTT-GATTG-AC-----AT-GC--TGG-AAGTGGAGAAATACA----CATCACACCGTGGCGCAGGAAAAG-A-TCGGGACCGA--CAA--ATTG-CACAAAATGTCTACTGGG-AGGACCTG--
gi|9 : GACTATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ATAGATTGG-T-A-ATATAAATAATTACATGTATATGTCTA-GAATTAAGAAAC-AAA-AG-GTATTT-GATTG-ACT---AAT-GC--CGGAAAATGGAGAAATACA---CCATCA-ACCTT-GCGCAG---AAA-ATTCTGCGCT-G--TAA--ATTG-CACCAAATGTCTA-TGGGAAGA-CCTGTATAGCGT
blockSeqs : AA GA C TT AAG T CAAATG G A TAA T T T TCCCTTTTGGTA T ATGGCTTTAATAG C A A TCTTTATTGG T G A G T A T C C A ATAATTACATGTATAT C G A T . GA A ATG A TT CGG G C G GAA T T T G AG AT C T C A A TA
blockSeqs : AT GA . . . T . . A . T T C TAAAT . TAGGACCATCA . . . . . G . . . . . . . A ACC C . . . . A . . . . . A . . A . T T . . . . G . A A .
blockSeqs : AG TT . . . T . . A . T T A T . TAGGCCATCTC . . . . . G . . . . . . . T TAT T . . . . T . . . . . A . . A . T A . . . . A . . . .
blockSeqs : . AT . . . T . . A . T . C T . CAG . . . . . G . . . . . . . A TAT C . . . . T . . . . . G . . A . . A . . . . T . . . .
blockSeqs : AA . . . . . . T . . . . T . . . . . . G . . . . . . . A TAC C . . . . A . . . . . T . . . . . T . . . . G . . . .
blockSeqs : . . A . . . . . . . . G . . . . . . . T TAA C . . . . T . . . . . A . . . . . A . . . . G . . .
blockSeqs : . . . . . G . . . . . . . T TAT T . . . . T . . . . . G . . . . . A . . . . T .
blockSeqs : . . . . G . . . . . . . G ACC A . . . . T . . . . . A . . . . . G . . . . G .
blockSeqs : . . . . . . . . . . A TAT C . . . . T . . . . . A . . . . . T . . . . G .
blockSeqs : . . . . . . . . . T . . . . . T . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : GTTTTATAATTAAANCATGCGNTTTT-TC--ACTGTT---CTTTATTAAAAGTTCATTGAAATGAATTCAATG------TGCATTTTGCTG-CATTCGATATGCATTT---AAGTTTCATTTGGATGTCCATTTGGG----T-----------AAA-TAGACGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATGA-------------TACGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTCA-ACCGT-GCGCAG---AAA-A-TCNGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-CCTG--TAGCGT
finalCons : GTTTTATAATTAAANCATGCGNTTTT-TC--ACTGTT---CTTTATTAAAAGTTCATTGAAATGAATTCAATG------TGCATTTTGCTG-CATTCGATATGCATTT---AAGTTTCATTTGGATGTCCATTTGGG----T-----------AAA-TAGACGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATGA-------------TACGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTCA-ACCGT-GCGCAG---AAA-A-TCNGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-CCTG--TAGCGT
Alignments
lowQualScore : 111 111111 111 1 3333333333333333 4444444444444444444444 1111111111 2222222222222222 111 1 1 1
lowQualScore : 44 44 6 99 111 7 222222 5 1 000 5 2 5 6666666666666666 6 4444444444444444444444 5 5 4 7777777777 4 4 3 3 3 3 3 3 3 8 1111111111111111 1 3 3 3 3 33 3 555 3 44 0 777 3 4 4 999 4 0 2 3 55 55 3 1 4 1 1 99
lowQualScore : .. .. . .. ... . ...... . . ... . . . ................ . ...................... . . . .......... . . . . . . . . . . ................ . . . . . .. . ... . .. . ... . . . ... . . . . .. .. . . . . . ..
lowQualScore : 66 77 7 22 777 3 888888 0 7 000 0 0 2 8888888888888888 7 6666666666666666666666 7 7 4 5555555555 0 6 6 6 6 6 6 6 6 4 9999999999999999 2 6 6 6 6 99 6 888 3 66 4 000 0 0 0 000 0 9 3 6 00 00 6 6 0 4 4 22
consensus : GTTTTATAATTAAANCATGCGNTTTT-TC--ACTGTT---CTTTATTAAAAGTTCATTGAAATGAATTCAATG------TGCATTTTGCTG-CATTCGATATGCATTT---AAGTTTCATTTGGATGTCCATTTGGG----T-----------AAA-TAGACGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATGA-------------TACGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTCA-ACCGT-GCGCAG---AAA-A-TCNGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-CCTG--TAGCGT
Reference ( family-5117 ) : GTTTTATAATTAAANCATGCGNTTTT-TC--ACTGTT---CTTTATTAAAAGTTCATTGAAATGAATTCAATG------TGCATTTTGCTG-CATTCGATATGCATTT---AAGTTTCATTTGGATGTCCATTTGGG----T-----------AAA-TAGACGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATGA-------------TACGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTCA-ACCGT-GCGCAG---AAA-A-TCNGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-CCTG--TAGCGT
gi|1 : GTTTTATAATTAAATCGTGCTCTTTT-TT--ACTGTT---CTT-ATTAATAGTTCATTGAA-TGAATTCAATG------TGCATTTTGCTG-CATTCGAT--GCATTT---AAATTTCGTTTGGATGTCGATTTGGG----T-----------AAA-TA-AGGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGG----------TCTGT-ATAGACGACTATGGA-GGTTAGGAGGTGGATG-AA-GTA-T-ACAGGTAGG-T-A-AT-TGA-------------ACCGTTTG-AAATTAGGGAAT-GAG-AGTTTATTA-GACTG-ACC---AAG-GC--CGG-AAGTGGACAAATACA-------AA-GCCGT-GCGCAG---AAA-A-CCAGCGCC-A--CAA--ATTG-CACAAAATTTCTA-TGGG-AGG-CCTG--TAGCGT
gi|10 : AATTAAAACATGCGATTTT-TTTTACTGGT---CTC-ATTAAA-GTTCATTGAAATGAATTCAGTG------TGCA-CTAGGTG-CATTC-ATATGCATTG---GAGTTT-ATTTGGATGTTCATTTGGG----TCCCTTTTGGTAAAA-TAGACGCGCt
gi|11 : agacattttaatcaagaaatgtgtattctattttattgtattttttaaaaagtgtcttcTTC-ATTGG----------ATTTC-AAAAAC--CTATGGAGG-TTAGGAGGTG-ATG-AA-GTA-T-ACAGGTAGG-A-A-AT-TGA-------------ACCGT-TA-GAATTAGGGAAT-GAATA---TATTA-GACTG-ACC---AAT-GC--CGGAAAGTGGAGGAATACA---CCGTCA-ACCGT-GCGTAG---A------------------AA--ATTG-CACAAAATTTCTA-TGGG-AGGACCTG--TAGCG
gi|12 : ATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATATAG-------------TATGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCATCA-ACCGT-GCACAG---AAA-ATTCTGCGCT-G--TTA--ATTG-CACAAA
gi|13 : GTTATATAATTAAATCATGAGATTTTCTC--ACTGTT---CTTTATTAGAATTTCATTGAAATGAGTTC--TG------TG
gi|14 : tgtttcaaatcaattttaatctagatttagtattctattctattgcattttagaagaatGTTTTATGATTAA----TTTTTTTTT-TC--ACTGTT---CTTTATCAAAAGTGCTTTGAAATGAATTCAATG------TGCATTTTGATG-Ct
gi|15 : tgattttttttaaaaagt------TGCATTTCGGTG-TATTCGATATGCATTT---AAG-TTCATTTGGGT
gi|16 : -TCTGCGCC-A--TAA--ATTG-CACACAATGTCTA-TAGa
gi|17 : t----------TCTGT-ATACACGACTATGAAGGGTTAGGA
gi|2 : ---AAT-GC--TTGAAAGTGGAGAAATACA---CCATCA-ACCGT-GCGCAGA--AAA-A-TCAGAGCA-A--TAA--ATTG-CATATAATATCTA-TG
gi|2 : TGTATTTCT-CC--ACTTTCAAGCATTATTAAAAGTTCATTGAAATGAATTCAATGCAAATGTGCATTTTGCTGGCATTCGCTATGCATTT---AAGTT-CATT-GGATGTCCATTTGGG----T-----------AAATTAGACGCA-CCCTTTAA----------TAGGACCATC-ACCGTCATGGAAGGAGATT-CAAAGC-AT-CGAGTTT--TTGG----------TCTGT-TTAGACGACTATGAA-GTTTAGGAGGTAGATGAAA-ATATT-ACAGGTTGGTT-A-ATATGA-------------TATGTCTA-G-ATTAGGGAAT-G-A-AG-GTATTT-GATTGAACC---AATAGCTTTGAAAAGTGGAGAattaaaagttcattgaaatgaattcaatgcaaatgtgcattttgctggcattcgctatgcatttaagttcattggatgtccatttgggtaaattagacgcaccctttaataggaccatcaccgtcatggaaggagattcaaagcatcgagtttttggtctgtttagacgactatgaagtttaggaggtagatgaaaatattacaggttggttaatatgatatgtctagattagggaatgaaggtatttgattgaaccaatagctttgaaaagtggaga
gi|3 : catagatattatatgcaatttattgctctgatttttctgcgcacggttgatggAAAAGTTCATTGAAATAACTTCAATG------TGCATTTTGCTG-CATTCGATATGCATTT---AAG--TCA-TTGGATGT-CATTTGGGTAAAT-----------AAA-TAGACGCACCCCTTTAA----------TAGG-CCATCTCCCGTCATGGCAGGAGATTCCAAAACAATACGAGTTTAATTGG----------TCTG--ATAGACGACTATGAA-GGTTAGGAGG-GGATG-AAGATA-TAACAGG-TAG-T-A-AATTGA-------------TAC-TTTA-GAATTA-GGAATAGAA-AG-TTATTA-GACTG-ACC---AAT-GC--CGGAAAGTGGAGAAATACA---CCGTTA-ACCGT-GCGCAG---AAATA-TCAGCGGC-AAGCAAATATTGCCACAAAATTTCTA-T-GG-AGG-ACTG--TAG
gi|4 : GAATTCAATG------TGCATTTTGCTG-CATTCGATTTGCATTTTAAAAGTT-CATGTAGATGTACATTTGGG----T-----------AAA-TAGACGCACCCCTTTAA----------CAG----------C-TCATGACAGGAGAT--------AA----AGTTT-ATTGG----------TCTGT-ATAGACGACTATGAAGGGTTAGGAGTTGGATG-AA-ATT-T-ACAGGTTGG-T-A-ATATAA-------------TAAGTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GA--TGGAAAGTGGAGAAGTACA---CCTTCA-ACCGT-GCACAG---AGA-ATTCTGTGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGGAAGA-CCTG--TAGCGT
gi|5 : TTTATATATAAAGCATGCAAGTAT-TC--ACTATT---CTTTATCAATAGTTCATTGAAATGAATTCAATA------TGCATTTTGCTG-CATTTGATATGCATTT---AAGTT-CATTTGGATGTCCATTTGAG----T-----------AAA-TAGACGCACCCCTTTAAATGGCTTTAATAG-----------GTCATGGCTGGAGATT-CAAAACATT-CGAGTTT-ACTGG----------TCTGT-AT--------------GGTTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-C-A-ATATGA-------------TATGTCTA-GAATTAGGGAAT-GAA-AC-GTATTT-GATTG-ACC---AAT-GC--TGGAAA
gi|6 : ttttttaaaacgtgGTCATGGCAGGAGATT-CAAAACAAT-CGAGTTT-ATTGGTCTTTATTGGTCTGT-ATAGACGACAATGAAGGATTAGGAGGTGGATG-AA-ATA-T-ACAGGTTGG-T-A-ATTTGA-------------T--GTCTA-GAATTAGGGAAT-GAA-AG-GTATTT-GATTG-ACC---AAT-GC--TGGGAAGTGGAGAAATACA---CCATCA-ACCGT-GCGCAGA--AAA-A-TCAGCGCC-A--TAA--ATTG-CACAAAATGTCTA-TGGG-AGG-
gi|7 : aGATT-CAAAACAAT-CGAGTTT-GTTGG----------TCTGTTACAGACGACTATGGAGGGTTAGGAGGTGAATG-AA-GTA-T-ACAGGTAGG-T-A-AATTGA-------------ACCGTTTA-GAATTAGGGAAT-GAG-AG-TTATTGAGACTG-ACCATGAAT-GC--CGGAAAGTGGAGATATATACGGCCGTCA-ACCAT-GCGCAGA--AAA-A-TCAGCACT-A--CAA--ATTG-CACAAAATTTCTA-TGa
gi|8 : GTTT-ATTGG----------TCTGT-ATAGACGACTATGAGGGATTAGGAGGTGGATG-AA-ATA-T--TAGGTTGG-TCACATGTGA-------------TATGTATAGGAATTAGTGAAT-GAA-AG-GCATTT-GATTG-AC-----AT-GC--TGG-AAGTGGAGAAATACA----CATCACACCGTGGCGCAGGAAAAG-A-TCGGGACCGA--CAA--ATTG-CACAAAATGTCTACTGGG-AGGACCTG--
gi|9 : GACTATGAAGGGTTAGGAGGTGGATG-AA-ATA-T-ATAGATTGG-T-A-ATATAAATAATTACATGTATATGTCTA-GAATTAAGAAAC-AAA-AG-GTATTT-GATTG-ACT---AAT-GC--CGGAAAATGGAGAAATACA---CCATCA-ACCTT-GCGCAG---AAA-ATTCTGCGCT-G--TAA--ATTG-CACCAAATGTCTA-TGGGAAGA-CCTGTATAGCGT