lowQualScore : 11111111111111111111111111111111111111111111111111 11111111111111
lowQualScore : 1 5555555555555555555 3333333333333333333333333333333333333333 111 22222 1 111 111111111 111111111111111111 1111 222222222222222222 1111111 1111111 222222222222222222 1111 77777777777777777777777777777777777777777777777777 1 11 22 111 1 11111111111111 22222 111 11 1 1 444444444444444444 11 2222 1 2 55555555555555555555555555555555555555555555555555555555555555555555 22222222 1 22 222222222222222222 2222222222222
lowQualScore : 1 3333333333333333333 44 555 5555555555555555555555555555555555555555 2 111 22 333 6 4444 2 00000 3 4 222 55 0 1 777777 22 4444 2 333 2 999 222222222 4 2 5555 333 33 4 2 111111111111111111 1 9999 555555555555555555 2222222 0 1 666 9999999 222222222222222222 5 77777 6666 5 77777 3 0000 3 2 3 11 4 3 77 0 6 99 3 99999999999999999999999999999999999999999999999999 44 8 5 2 3 11 11 777 7 8 55555555555555 55555 55 444 666 88 3 6 6 22 3 4 777777777777777777 33 4444 9 0 4 3 44444444444444444444444444444444444444444444444444444444444444444444 00000000 0 0 6 6 6 0 5 11 444 444 666666666666666666 6 2 33 77 6666666666666 3 8 77
lowQualScore : . ................... .. ... ........................................ . ... .. ... . .... . ..... . . ... .. . . ...... .. .... . ... . ... ......... . . .... ... .. . . .................. . .... .................. ....... . . ... ....... .................. . ..... .... . ..... . .... . . . .. . . .. . . .. . .................................................. .. . . . . .. .. ... . . .............. ..... .. ... ... .. . . . .. . . .................. .. .... . . . . .................................................................... ........ . . . . . . . .. ... ... .................. . . .. .. ............. . . ..
lowQualScore : 0 0000000000000000000 22 444 0000000000000000000000000000000000000000 5 999 88 333 4 7777 2 33333 5 0 555 22 3 9 111111 66 2222 0 999 0 000 111111111 2 1 6666 999 11 4 2 111111111111111111 8 1111 888888888888888888 5555555 5 8 444 3333333 666666666666666666 7 11111 1111 7 11111 9 8888 1 8 1 55 9 7 99 2 2 88 3 66666666666666666666666666666666666666666666666666 22 0 0 5 6 00 00 555 0 8 88888888888888 00000 88 333 333 33 3 0 0 88 3 2 888888888888888888 88 0000 0 3 0 5 66666666666666666666666666666666666666666666666666666666666666666666 77777777 7 7 7 7 5 0 0 22 777 777 777777777777777777 0 7 99 99 7777777777777 8 0 00
consensus : GGGGCTGACAA------AT----C-C----CAT--T---GC-----CCG------G-------G--GCA----------A-GT-GGATTTT---C-TGG-C-AGGGCA----A-G-TG--AATTTT-T---AA--TAA-C--C---ACT--T----GCC-CGC--GGG-CAA---GT----A----AC-T-T--G-A---A--AA-A-TCC----------AGT---C-AGT--GAAAAAN--TA-----------G-AATAAAAC------ATGTCGT---ACATTC--G---GACTGAA-----ATCAGA-G--G--T-ATATCA-----TCGT--ACG-AG-----TTATCTTCCGTTAC-GTAAACTAGTC-AGCTATGTG--AACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTTACCATATT--AT------ATAATT--TATA-GAGCAGGTTNAACNTTTATTGGTA-GACAAATTGGCAGCAGA---AGGCTGACTTTAAAGATTTTTCAAAGTGCAAAT-----AACTTGAGGAACT-TAAA--TC-TCATGAAATNA-GTTAAGC----TTCAC--GG-GAGTTNTAAAGTAGGGCAGCAAAAGTAAANGAATGTC--AC----GAACTA-------------CA--TTTN--TTTGTTT---TN-TATCGTA-----------ATTT--------TGTTAA-A-GGTAGGGCAAG-TAAAA-TCACAGGC-AGGGCAAGTGA---A---TTTT-GTC-AT-G--C-A--CTTGCC-CGT--GGGC--AAGT-GC--TCT-N---AAAATCTATTTG-TCAGCCC
Reference ( gi|4 ) : GGTGCTGACAA------TT----TTC----CAT--T---GC-----CCG------G-------G--GCA----------A-GT-GGATTTT---C-TGG-C-AGGACA----A-G-GA--AATATT-T---AA--TAA-C--C---ACT--T----GCC-CGT--GGG-CAA---GT----A----AC-T-T--G-A---A--AA-A-TCC----------AAT---T-AGT--GAAAAAA--TA-----------G-AATAAAAC------ATGTCGT---ACATTC--G---GACTGAA-----ATCGGA-A--G--T-ATATCA-----TCGT--ACG-AG-----TTGTCTTTCGCTAT-GTAAACTAGTC-AGCTGTATG--AACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTTACCAGCTTGAAT-----GATAATT--TATA-GATCAGGTTCAACATTTATTGGTA-AACAAATTGGCGGCAGA---AGGCTGACATGAAAG------CA-----CAAAT-----AACTTGAAGAACT-TTAA--TC-TCGTGAGACTA-GTTAAGC----TTCAC--GG-G--TTCCAAAGTTGGGCAGCAATAATATATGAATATT--AC----AAACTA-------------CA--TTTA--TTTGTTT---TG-TGTCATA-----------ATTT--------TGTTGA-A-GGTAGGGCAAG-TAAAA-TCACAGGA-AGGGCAAGTGA---A---TTTTGGTC-AT-G--C-A--CATACC-CGT--GGGC--AAGT-GC--TCT-T---AAAATCTATTTG-TCAATCCCT
gi|12 : GGGGCTGACAA------AT----CGC----CAT--T---GC-----CCGACGCC-G-------G--GCT----------T-GT-GAATTTT---T-GGG-C-AGG-CA----A-G-TG--AATTTTAT---AA--TAA-C------ACT--T----GCC-TGT--GGG-CAAAA-GT----A----AC-T-T--T-G---A--AA-A-TCC----------AGT---CGAGT----AAAAA--TA-----------G-AATAAAAC------AT---GT---ACATTC------GACTGAA-----ATTATA-G--G--T-ATATCA-----TC-T--ACG-AG-----T----------TAT-GTAAA-TAGTC-AA--GAATGTTAACCAGTTCTAATC--TGTCG-TTACGTG---------CTT--------TCTTACCA--TT----------ATAATTCATATA-GAGCA-GTTCAACCTTTATTAG
gi|11 : aGGGGCTGACAA------AT----CGC----CAT--T---GC-----CCGACGCC-G-------G--GCT----------T-GT-GAATTTT---T-GGG-C-AGG-CA----A-G-TG--AATTTTAT---AA--TAA-C------ACT--T----GCC-TGT--GGG-CAAAA-GT----A----AC-T-T--T-G---A--AA-A-TCC----------AGT---CGAGT----AAAAA--TA-----------G-AATAAAAC------AT---GT---ACATTC------GACTGAA-----ATTATA-G--G--T-ATATCA-----TC-T--ACG-AG-----T----------TAT-GTAAA-TAGTC-AA--GAATGTTAACCAGTTCTAATC--TGTCG-TTACGTG---------CTT--------TCTTACCA--TT----------ATAATTCATATA-GAGCA-GTTCAACCTTTATTAGaa
gi|13 : aGGTGGTGACGA------AA----TAC----CAT--TTCTGC-----CCG------G-------G--GCA----------A--T-GGATTTT---A-TGGTC-CGGGCA----A-T-GT--GATCTT-------------C--G---ACG--C----GTC-CA---AGA-CAA-------------------T--G-A---A--AA---TCC----------AGT---C-TGTCTGAAGAAAGATA-----------T-GATAAAAC--------GCTGTGCAACAGTCAAG---AGCTGAA-----ATCAAACA--G--T-ATATCA-----TGGTGAACA-A------TTATCTTTGGTTAT-GTAAATCAGTCAAGCTATGTG--AACCCATT-Taa
gi|16 : gGGGGCTGACAA------AA----TCCT---CAT--T---TC-----TCG------G-------A--ACA----------CCGT-AG--------C-TGG-----GGCA----A-GTGA--ATTATT-TT--AA--TAA-C--C---ACTCTT----GCC-CGTACGGG-CAA---GT----A----ACTT-T--GTA---A--AA-A-TCC----------AAT---TAAGT--AAAtgaa
gi|22 : atcaGGGGCTGACAAATCTCATT----GTC----CGA--T---GC-----CCA------G-------G--GCA----------A-AT-GGATTTT---C-TGG-T-CGGGCG----T-G-TG--AATATT-T---AA--TAT-C--C---ATT--c
gi|15 : GGGGCTGACAA------AT----CCTATAACAC--T---GCTAC--CTC------G-------G--GCA----------A-GT-AAATTTC---T-GGG-T-AGTACT----G-G-TA--AATTTT-T---GA--TAA-G--C---AGT--T----GTC-CAT--GGG-CAA---GT----A----AT-T-TAGG-A---AGTAG-C-TCC----------AAG---T-A
gi|7 : caGCTGATAA------AT----C-C----CAT--T---GC-----CTG------ACGCCCATG--GCA----------T-GT-GGATTTT---C-TGG-C-AGGGCA----A-G-TG--AATTTT-T---AA--TAA-C--C---ACT--T----GCC-CAT--GGG-CAA---GT----A----AC-T-T--G-A---A--AA-A-TCC----------AGT---C-AGT----AAAAA--TA-----------G-AATAAAGC------AAGTCGT---ACATTC--G---GACTGAA-----ATCGAA-G--G--T-ATATCA-----TCGT--ACT-AG-----TTGTCTTTCGTTAT-GTACACTAGTC-AGCTATGTG--AACCAA--------TG-------TACGAG-----A---TTT--------CCTTACC------AAT-----AATAATTTATATA-GAGCAGGTTCAACTTTTATTGGTA-GACAAATTGGCAGCAGA---AGGCCGACTTTAAAG--------------AAAT-----A---------------AA--TC-TCATGAAACTA-GTT-AGCCGAGTTCACAGGA-G--TTCTAAA----------AACAGTGTAT---TATTGGACTCTGGAATTA-------------T---TTTA--ATTGTTGGAATC-TGTTAAA-----------ATTT--------TGTTaga
gi|9 : ggGCTGAAAA------AT----C-C----CAT--T---GC-----CCG------ACACTCTTA--GTG----------A-GT-GGATTTT---C-TGG-T-AGAGCA----A-G-TG--AATATT-TTTAAA--TAA-C--T---ACT--T----GCC-TGC--AGG-CAA---GT----G----AC-T-T--A-A---A--AA-AATCT----------AGT---C-ATT--GAAAAA---TA-----------G-AATAAAAC------CTGCTGT---ACAGTT--G---GACTGAA-----ATCAAA-A--GTAT-ATATCA-----TTGT--ATG-AA-----TTATCTTCCGTTAC-GTAAACTAGTC-ATCTATGTG--AACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTTACTATATTTAAT----------TT--TA-A-GAGCAGGTTGAACATTTATTGGTA-tataggc
gi|10 : ggGCTGAAAA------AT----C-C----CAT--T---GC-----C----------------G--ACACTCCTTAGTGA-GT-GGATTTT---C-TG--T-GGAGCA----A-G-TG--AATATT-TTTAAA--TAAAC--T---ACT--T----GCC-TGC--AGG-CAA---GT----G----ACGT-T--A-A---A--AA-A-ATC----------TGT---C-ATT--GAAAAA---TA-----------G-AATAAAAC------CTGCTGT---ACAGTT--G---GACTGAA-----ATCAAA-A--GTAT-ATATCA-----TTGT--ATG-AA-----ATATCTTCCGTTAC-GTAAACTAGT--ATTCCTGTG--AACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTTACTATATT-----------TAATT--T-TA-AGGCAGGTTGAACATTTATTGGTA-t
gi|17 : ggGCTGACAA------AT----C-C----CAT--T---GC-----CCGCGCCCGG-------G--GC-----------A-TT-GCATTTT---CATGG-C-AGGGCA----ATG-TG--AATTTT-T---CA--TAA-T--C---
gi|18 : gGCTGACAA------ATCGTATTG----CCTGAT---GC-----TCA------A-------G--GAA----------A-GT-AAATTTT---A-GGG-T-AGGACA----C-G-TT--AATTTT-T---GA--TTA-T--C---ACT--TAATTGTT-TAT--GGG-CAA---G-----A----AC-T-T--cgaccttactgccaatatgagttaagtcatgttattgagaa
gi|6 : aggGACAA------AT----C-C----CAT--T---GCGACGCCCG------G-------G--G-A----------T-GT-GAATTTTT--C-TGG-C-AGGGCA----A-GTGA--A---TT-T---AACATAA-C--C---ACT--T----GCC-CGT--GGG-CAA---GT----A----AC---T--G-A---A--AA-A-TCC----------AGT---C-AGT----AAAAT--TA-----------GAAAAAAAAC------ATGTCGT---ACATT-------GACTGAT-----A---GA-G--G--TCAT-TCG-----TC----ACGAAG-----TTGTCTTTCGTTAT-GTACTATAGTC-AGCTATGCG---ACCAGTT-TAATC--TGTCA-TTA-GAG-----A------------------A-----TTG-----------------TATAGGAGCAGGTTCAACTTTTATTGGTA-GACAAATTGG-AGCAGA---AGGCTGACTTTAAAGATTTTTCAAAGTGCAAAT-----AACTTGAGACACT-TAAA--TCTTCATGAAATAG-GTTGAG------TTAT--GGAG--TTTTAAAG-TAGGCAGCAAAAGTA-ATGAATGTC--AC-----GACAG-------------CA--ATTT--TTAGTTT---TA-TATCGTA-----------ATTT--------TGTTAA-A-AGTA-GGCAAGTTAAAA-TTACAGGC-AGGGCAA-TGA---A---TTTT-GTCAAT-G--C-A--CTTG-C-CGT--GGGC--AAGT-G---TCT-A---AAAATCTATTTGATCAGCCCtgat
gi|5 : aggggcGACAA------AT----C-C----CAT--T---GCGACGCCCG------G-------G--G-A----------T-GT-GAATTTTT--C-TGG-C-AGGGCA----A-GTGA--A---TT-T---AACATAA-C--C---ACT--T----GCC-CGT--GGG-CAA---GT----A----AC---T--G-A---A--AA-A-TCC----------AGT---C-AGT----AAAAT--TA-----------GAAAAAAAAC------ATGTCGT---ACATT-------GACTGAT-----A---GA-G--G--TCAT-TCG-----TC----ACGAAG-----TTGTCTTTCGTTAT-GTACTATAGTC-AGCTATGCG---ACCAGTT-TAATC--TGTCA-TTA-GAG-----A------------------A-----TTG-----------------TATAGGAGCAGGTTCAACTTTTATTGGTA-GACAAATTGG-AGCAGA---AGGCTGACTTTAAAGATTTTTCAAAGTGCAAAT-----AACTTGAGACACT-TAAA--TCTTCATGAAATAG-GTTGAG------TTAT--GGAG--TTTTAAAG-TAGGCAGCAAAAGTA-ATGAATGTC--AC-----GACAG-------------CA--ATTT--TTAGTTT---TA-TATCGTA-----------ATTT--------TGTTAA-A-AGTA-GGCAAGTTAAAA-TTACAGGC-AGGGCAA-TGA---A---TTTT-GTCAAT-G--C-A--CTTG-C-CGT--GGGC--AAGT-G---TCT-A---AAAATCTATTTGATCAGCCC
gi|8 : aggggc-----CCG------G-------GTAGCA------------GTAGGATTCTGGTC-TGG-CTAGTATAGCAAA-G-GGTTAATTTT-T---AA--TAA-T--C---ACT--T----GCC-CGC--GG--CAATGAGT----A----AC-T-T--G-AGATA--AA-A-TCCGCATCAAGTTAATCGAT-AAC--AAAAAAG--CAAGTTGCACAATG-AATAAAACGGTTCCATGTCGA---ACATTC--GTTAGAACAAATATCGACCGGA-AAAG--T--TATCAATTACTCG---ACG-AGCAGAATTATCTT-CGTTATTGTAAACTATTC-AGCTATGTG--AACCAGTT-TAAT-TCTTTTGCTTACGAG-----A---TTT--------T
gi|21 : ggggctgacaaatcccatcttaacttcgcttccgaaccagcaG------G-------G--GCA----------A-GT-AAAATCA---C-AGG-C-AGGGCA----A-G-TG--AAT-TT-T---AG--T---C--CTGCACT--T----GCC-CGT--GGG-CAA---GT---------GC-T-C--T-A---A--AA-A-TCT----------ATT---T-
gi|14 : ------G-------G--GCA----------A-GT-AAAAATGA--C-AGA-C-AGGGCA----A-G-AG--AAT-TT-T---GA--TCA-TG-C---ACT--T----GCCACG---GAG-CGA---GT----gtcagcc
gi|3 : tatgatgtcacgaaagtaagttagtagttttttcagtttatttcgcatttgttaaaggtaGG-T-AGGGCA----A-G-TG--AAT-TT-T---GG--TCA-TG-C---ACT-------GTC-CGT--GGG-CAA---GT----gctctatataatctatttgtcagccttcc
gi|21 : atatcattgtatgaaatatcttccgttacgtaaactagtattcctgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaaggcaggttgaacatttattggtatatcaaagcgcaaatataaaccgccattgaatcaacagctgaacacaaataagtacctgtgtgatgcctagtctgaatttctcacttttgtatttactgtcgggagtgtaagtttttcaccaacccaatacttaacgaaagaaatttttgtttcttaaacacacaaagtgtatgcaaaattttttgagttgaagaactgttaaaatctcaagaaattaagtgaagctcacgagagttgtaaagtagggcagcaaaaataaaagaatgttcatgaactactttacattttttttgtaaatttctgaaaggtaaagcaagtaaagtcaaagGACA----A-A-TA--GATTTT-T---AG----A-G--C---ACT--T----GCC-CAC--GGG-CAA---GTGCAGG----AC-T----------A--AA-A-TTC----------ACT---T-gctctgtagatctatttgtcagctagccccggat
gi|20 : ggggcaagtaaaatcacaggcagggcATT-TTAAAA--TAA-C--C---ACT--T----GTT-CAC--AGGTCAA---AT----G----AC-T-T--G-A---A--AA-A-TCC----------AGT---C-A-T--GAAAAAC--TG-----------G-AATAAAAC------CAGTTGT---ACAATA--G---GTCTGAA-----ATCagcc
gi|9 : TT-T---AA----G-T--C---ACT--T----GCC-TGC--AGG-CAA---GT----AGTT-AT-T-T--A-A---A--AATA-TTC----------ACT---T-aaa
gi|10 : gggctgaaaaatcccattgcccgacactcttagtgagtggattttctggtagagc--TAA-CGTC---ACT--T----GCC-TGC--AGG-CAA---GT----AGTTTAT-T-T--A-A---A--AATA-TTC----------ACT---T-aaaatctagtcattgaaaaatagaataaaacctgctgtacagttggactgaaatcaaaagtatatatcattgtatgaattatcttccgttacgtaaactagtcatctatgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaagagcaggttgaacatttattggtat
gi|7 : gggctgaaaaatcccattgccgacactccttagtgagtggattttctgtggagc---ACT--T----GCC-CAT--GGG-CAA---GT----G----GT-TAT--T-A---A--AA-A-TTC----------ACT---T-aaaaaatctgtcattgaaaaatagaataaaacctgctgtacagttggactgaaatcaaaagtatatatcattgtatgaaatatcttccgttacgtaaactagtattcctgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaaggcaggttgaacatttattggta
gi|19 : gggctgataaatcccattgcctgacgcccatggcatgtggattttctggcagggc-T-T--G-A---A--AA-A-TCC----------AGT---A-ATT--GAAAAA--------------------TAGAAC------ATATTGC---ACATTC--G---GACTGAA---------------------CAT-A-----TCGT--ATG-AG-----TTATCTTCCATTAT-GTAAACTAGTC-AGCTATGTG--AACCaacttgaaaaatccagtcagtaaaaatagaataaagcaagtcgtacattcggactgaaatcgaaggtatatcatcgtactagttgtctttcgttatgtacactagtcagctatgtgaaccaatgtacgagatttccttaccaataataatttatatagagcaggttcaacttttattggtagacaaattggcagcagaaggccgactttaaagaaataaatctcatgaaactagttagccgagttcacaggagttctaaaaacagtgtattattggactctggaattattttaattgttggaatctgttaaaattttgtttataggc
gi|2 : --T-ATATCA-----TTGT--ATG-AA-----TTATCTTCCGTTAC-GTAAACTAGTC-ATCTATGTG--AACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTTACTATATTTAAT----------TT--TA-A-GAGCAGGTTGAACATTTATTGGTATATCAAA
gi|24 : a--T-ATATCA-----TCGT--ACA-AG-----TTATCTTgcgcaaatataaccgaccattgaatcaacagctgacaacaaataagtacctgtgtgatgcctagtctgaattttctcacttttgtatttactgtcgggagtgtaagattttcaccaacccaaatacttaacaaaagaaatttttgtttctaaaacacacaaagtgaatgcaaaattttttaagttgaagaactgttaaaatctcaagaaattaagttaagttcacgagagttgtaaagtagggcagcaaaaataaaagaatgttacaaactacaggtacattttttttgtaaatttgtgaaaggtaaagcaagtaaagtcaaaggtagggcaagtgaattttggtcatgcaccgtctgtgggcaagtgctctgtagatctatttgtcagctagccccgga
gi|3 : a-ATATCA-----TTGT--ATG-AA-----ATATCTTCCGTTAC-GTAAACTAGT--ATTCCTGTG--AACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTTACTATATT-----------TAATT--T-TA-AGGCAGGTTGAACATTTATTGGTATATCAAAcaagtcttcaagt
gi|1 : -ATATTA-----TCGT--ACA-AG-----TTATCTT-------------CAAGTC-AACTATGTG--AACAAGTT-TAATCTGTGTCG-TTATATG-----AATCTTT--------TGTT--CAATATGGATTTACCAATAATT--TAAA-GTGCAGGTTGAACACTTATTGGTA-GACAAATTGGCAACAGATTCAGGCTGAgcgcaaatataaaccgccattgaatcaacagctgaacacaaataagtacctgtgtgatgcctagtctgaatttctcacttttgtatttactgtcgggagtgtaagtttttcaccaacccaatacttaacgaaagaaatttttgtttcttaaacacacaaagtgtatgcaaaattttttgagttgaagaactgttaaaatctcaagaaattaagtgaagctcacgagagttgtaaagtagggcagcaaaaataaaagaatgttcatgaactactttacattttttttgtaaatttctgaaaggtaaagcaagtaaagtcaaagggtagggcaagtgaattttggtcatgcactgtccgtgggcaagtgctctgtagatctatttgtcagctagccccggat
gi|23 : --AACCAGTT-TACTCTCTGTCC-TTACAAG-----T---CTT--------TATTtgtctaaattaaatggagaaaattttagcaatttcaaagtgcaaataaccaaccattgaaatgaaagctgacaacaaatattaacgatgccaagcgtagtgtgacagttttggaacctttgtatttactggtgggagtgtgaaattatcaccaacccttgaatttaaccaaataaattttattactgaaaacataaactggatgcaatttttttttttagttgaacataaatttcatcaaaccagttatgctcatgggaattgtaaaatatgacagaaaaataaaagaatggcgcaaactaaactagtttgtgccattcttttatttttctgtcatattttaacaattatttcataaaacttttggtaggtagggaaagtaatatcacagtagggcaagtgaattttatcatgcattgccc
gi|2 : TGAATG------CA------AAATTTTTTAAGTTGAAGAACTGTTAAAATC-TCAAGAAATTAAGTTAAG-----TTCAC--GA-GAGTTGTAAAGTAGGGCAGCAAAAATAAAAGAATGTT--AC----AAACTA-------------CAGGTACA--TTTTTTT---TG-T-----A-----------AATT--------TGTGAA-A-GGTAAAGCAAG-TAAAG-TCAAAGGT-AGGGCAAGTGA---A---TTTTGGTC-AT-G--C-A--C-CGTC-TGT--GGGC--AAGT-GC--TCT-G---TAGATCTATTTG-TCAcaatacaaatctt
gi|3 : atatatcattgtatgaattatcttccgttacgtaaactagtcatctatgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaagagcaggttgaacatttattggtatatcaaagcgcaaatataaccgaccattgaatcaacagctgacaacaaataagtacctgtgtgatgcctagtctgaattttctcacttttgtatttactgtcgggagtgtaagattttcaccaacccaaatacttaacaaaagaaatttttgtttctaaaacacacaaagTTGAAGAACTGTTAAAATC-TCAAGAAATTAAGTGAAGC----T-CAC--GA-GAGTTGTAAAGTAGGGCAGCAAAAATAAAAGAATGTTC-AT----GAACTA-------------C---TTTACATTTTTTT---TG-TA----A-----------ATTT--------C--TGA-AAGGTAAAGCAAG-TAAAG-TCAAAGGGTAGGGCAAGTGA---A---TTTTGGTC-AT-G--C-A--C-TGTC-CGT--GGGC--AAGT-GC--TCT-G---TAGATCTATTTG-TCAgctagccccgga
gi|1 : atatcattgtatgaaatatcttccgttacgtaaactagtattcctgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaaggcaggttgaacatttattggtatatcaaagcgcaaatataaaccgccattgaatcaacagctgaacacaaataagtacctgtgtgatgcctagtctgaatttctcacttttgtatttactgtcgggagtgtaagtttttcaccaacccaatacttaacgaaagaaatttttgtttcttaaacacacaaagtgtatgcaaaattttttgagGAACA-TAAA--TT-TCATCAAACCA-GTTATGC----T-CAT--GG-GAATTGTAAAATATGACAGAAA-AATAAAAGAATGGC--GC----AAACTAAACTAGTTTGTGCCA--TTCT--TTTATTT---TTCTGTCATATTTTAACAATTATTTCATAAAACTTTTGGTA-GGTAGGGAAAG-TAATA-TCACAGT--AGGGCAAGTGA---A---TTTT-ATC-AT-G--C-A--T-TGCC-Cgctagccccggat
gi|14 : atattatcgtacaagttatcttcaagtcaactatgtgaacaagtttaatctgtgtcgttatatgaatcttttgttcaatatggatttaccaataatttaaagtgcaggttgaacacttattggtagacaaattggcaacagattcaggctgatgtctaaattaaatggagaaaattttagcaatttcaaagtgcaaataaccaaccattgaaatgaaagctgacaacaaatattaacgatgccaagcgtagtgtgacagttttggaacctttgtatttactggtgggagtgtgaaattatcaccaacccttgaatttaaccaaataaattttattactgaaaacataaactggatgcaatttttttttttagtt--TTTT--TTCAGTT---TA-TTTCGCA-------------TT--------TGTTAA-A-GGTAGGGCAAG-TAAAAATGACAGAC-AGGGCAAGAGA---A---TTTTGATC-AT-G--C-A--CTTGCCACG---GAGC--GAGT-GC--TCTAT---ATAATCTATTTG-TCA
gi|21 : tatgatgtcacgaaagtaagttagtagGGGCAAG-TAAAA-TCACAGGC-AGGGCAAGTGA---A---TTTTAGTC-CT-G--C-A--CTTGCC-CGT--GGGC--AAGT-GC--TCT-A---AAAATCTATTTG-TCAgccttcc
gi|15 : gGGGCAAG-TAAAT-TTCTGGGT-AGTACTGGTAA---A---TTTTTGAT-AA-G--C-A--GTTGTC-CAT--GGGC--AAGT-gcc
gi|7 : caggggctgacaaatcctataacactgctacctcGGC-AGGGCAAGTGA---A---TTTT--TA-AT-AACC-A--CTTGCC-CAT--GGGC--AAGT-AA---CT-TGA-AAAATCCA---G-TCAGTaatttaggaagtagctccaagtaaga
gi|9 : gggctgataaatcccattgcctgacgcccatggcatgtggattttctGGT-AGAGCAAGTGA---ATATTTTTAAAT-AA-C--T-A--CTTGCC-TGC--AGGC--AAGT-GA---CT-TAAAAAAATCTA---G-TCAaaaaatagaataaagcaagtcgtacattcggactgaaatcgaaggtatatcatcgtactagttgtctttcgttatgtacactagtcagctatgtgaaccaatgtacgagatttccttaccaataataatttatatagagcaggttcaacttttattggtagacaaattggcagcagaaggccgactttaaagaaataaatctcatgaaactagttagccgagttcacaggagttctaaaaacagtgtattattggactctggaattattttaattgttggaatctgttaaaattttgtttataggc
gi|16 : gggctgaaaaatcccattgcccgacactcttagtgagtggattttctGGGCAAGTGAATTA---TTTTAATA-AC----C-ACTCTTGCC-CGTACGGGC--AAGTAAC--TTTGT---AAAAttgaaaaatagaataaaacctgctgtacagttggactgaaatcaaaagtatatatcattgtatgaattatcttccgttacgtaaactagtcatctatgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaagagcaggttgaacatttattggtat
gi|12 : atcaggggctgacaaaatcctcatttctcggaacaccgtagctgGGCAAGTGA---A---TTTT-ATA-ATAA--C-A--CTTGCC-TGT--GGGCAAAAGTAAC--TTT-G---AAAATCCAatccaattaagtaaac
gi|11 : aggggctgacaaatcgccattgcccgacgccgggcttgtgaatttttgggcaGGCAAGTGA---A---TTTT-ATA-ATAA--C-A--CTTGCC-TGT--GGGCAAAAGTAAC--TTT-G---AAAATCCAgtcgagtaaaaatagaataaaacatgtacattcgactgaaattataggtatatcatctacgagttatgtaaatagtcaagaatgttaaccagttctaatctgtcgttacgtgctttcttaccattataattcatatagagcagttcaacctttattagaa
gi|21 : aggggctgacaaatcgccattgcccgacgccgggcttgtgaatttttgggcaGACAAATAG---A---TTTT--TA-GA-G--C-A--CTTGCC-CAC--GGGC--AAGT-GCAGGAC-T---AAAATTCACTTG-CCgtcgagtaaaaatagaataaaacatgtacattcgactgaaattataggtatatcatctacgagttatgtaaatagtcaagaatgttaaccagttctaatctgtcgttacgtgctttcttaccattataattcatatagagcagttcaacctttattagaa
gi|7 : ggggcaagtaaaatcacaggcagTGG---A---TTTT--TC-AA-G--TTA--CTTGCC-CAT--GGGC--AAGTGGT--TAT-TA--AAAATTCACTTG-CCagcc
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 66666666666666666666666666666666666666666666666666666666666666666666 111 111 222222222 1111111111111111 1111111 1111111 0000000000000000000000000000000000000000000 22222 1 1 111 11111111 4444444444444444444444444444444444 333333 11 1 1 1 2222222 1 3333333333333333333333 1 22222222222 222222222 1 2 1 1
lowQualScore : 2 2 8 2 22222222222222222222222222222222222222222222222222222222222222222222 2 000 2 444 444 000 66 33 5 88 44 5555 33 33 2 77 555 2 5 2 555 2 888888 9 0 666666666 9999999999999999 6 0000000 0 555 6666666 3 999999 6 3 44 5 33 66666 4444 9999999 2 88 3 2 0 0 6 2 3 4444444444444444444444444444444444444444444 11111 1 1 1 0 444 44444444 4444444444444444444444444444444444 222222 0 2 1 55 1 1 1 1 2 6666666 6 1 0 0 7 1 5 5 9999999999999999999999 77 11 33 66 3 77777777777 1 1 222222222 6 0 5 5 2 0 5 0 6 6 5 4 66 1
lowQualScore : . . . . .................................................................... . ... . ... ... ... .. .. . .. .. .... .. .. . .. ... . . . ... . ...... . . ......... ................ . ....... . ... ....... . ...... . . .. . .. ..... .... ....... . .. . . . . . . . ........................................... ..... . . . . ... ........ .................................. ...... . . . .. . . . . . ....... . . . . . . . . ...................... .. .. .. .. . ........... . . ......... . . . . . . . . . . . . .. .
lowQualScore : 7 7 0 7 77777777777777777777777777777777777777777777777777777777777777777777 7 000 7 000 777 000 99 44 0 44 99 7777 77 99 9 99 000 9 3 9 000 9 888888 2 8 222222222 7777777777777777 7 7777777 8 888 0000000 3 666666 3 3 22 3 77 77777 5555 6666666 5 00 6 9 6 2 2 5 3 2222222222222222222222222222222222222222222 88888 0 0 4 0 000 22222222 5555555555555555555555555555555555 999999 7 2 3 77 4 4 0 4 3 4444444 6 0 8 7 3 0 7 0 6666666666666666666666 66 11 11 77 0 11111111111 9 6 999999999 5 0 0 0 5 0 0 0 5 5 0 3 77 4
consensus : GGGGCTGAC-AAA-TC-C-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCG--CGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT-------GAAAAAA--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------AAA-GG--T-ATAT--CA-----TCGT--ACGA-G-----TTATCTTCCGTTAC-GTAAACTAGTC-AGCTATGTGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTTACCATA-----TT---T--ATAATT--TATAGAGCAGGTTCAACNTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAAGAACT--TAAA-TC-TCATGAAACTA-GTTAAGC----TTCACGGGAGTTNTAAAGTAGGGCAGCAAAAATAAANGAATG-TCACGAA------CTA-------------CA-TTTNTTCGTTTTN-TGTCGTA-----------ATTTTGTTAAA---------GGTAGGGCAAG-T-AAAATCACA-GGCAGGGCAAGTGAATTTTGG-TC-ATGCACTTGCC-CGTGGGCAAGTGCTCT-NAAAATCTATTTG-TCAGCCC
Reference ( family-507 ) : GGGGCTGAC-AAA-TC-C-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCG--CGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT-------GAAAAAN--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------AGA-GG--T-ATAT--CA-----TCGT--ACGA-G-----TTATCTTCCGTTAC-GTAAACTAGTC-AGCTATGTGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTTACCATA-----TT--AT--ATAATT--TATAGAGCAGGTTNAACNTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAGGAACT--TAAA-TC-TCATGAAATNA-GTTAAGC----TTCACGGGAGTTNTAAAGTAGGGCAGCAAAAGTAAANGAATG-TCACGAA------CTA-------------CA-TTTNTTTGTTTTN-TATCGTA-----------ATTTTGTTAAA---------GGTAGGGCAAG-T-AAAATCACA-GGCAGGGCAAGTGAATTTT-G-TC-ATGCACTTGCC-CGTGGGCAAGTGCTCT-NAAAATCTATTTG-TCAGCCC
gi|1 : -ATAT--TA-----TCGT--ACAA-G-----TTATCTTC----A---------AGTC-AACTATGTGAACAAGTT-TAATCTGTGTCG-TTATATG-----AATCTTT--------TGTT-CAATATGGATTT--ACCAATAATT--TAAAGTGCAGGTTGAACACTTATTGGTAGA-CAAATTGGCAACAGATTCAGGCTGATGTCTAAATTAAATGGAGAAAATTTTAGCAATTTCAAAGTG----CAAA------TAAC
gi|1 : GAACA--TAAA-TT-TCATCAAACCA-GTTATGC----T-CATGGGAATTGTAAAATATGACAG-AAAAATAAAAGAATG-GCGCAAA------CTAAACTAGTTTGTGCCA-TTCTTTTATTTTTCTGTCATATTTTAACAATTATTTCATAAAACTTTTGGTAGGTAGGGAAAG-T-AATATCACA-G-TAGGGCAAGTGAATTTT-A-TC-ATGCA-TTGCC-Ccaaccattgaaatgaaagctgacaacaaatattaacgatgccaagcgtagtgtgacagttttggaacctttgtatttactggtgggagtgtgaaattatcaccaacccttgaatttaaccaaataaattttattactgaaaacataaactggatgcaatttttttttttagttgaacataaatttcatcaaaccagttatgctcatgggaattgtaaaatatgacagaaaaataaaagaatggcgcaaactaaactagtttgtgccattcttttatttttctgtcatattttaacaattatttcataaaacttttggtaggtagggaaagtaatatcacagtagggcaagtgaattttatcatgcattgccc
gi|10 : atattatcgtacaagttatcttcaagtcaactatgtgaacaagtttaatctgtgtcgttatatgaatcttttgttcaatatggatttaccaataatttaaagtgcaggttgaacacttattggtagacaaattggcaacagattcaggctgatgtctaaattaaatggagaaaattttagcaatttcaaagtgcaaataaccaaccattgaaatgaaagctgacaacaaatattaacgatgccaagcgtagtgtgacagttttggaacctttgtatttactggtgggagtgtgaaattatcaccaacccttgaatttaaccaaataaattttattactgaaaacataaactggatgcaatttttttttttagttGGGCTGAA-AAA-TC-C-CAT--------T--------GC-----C--------------------GAC-------ACTCCTTAGTGA-GT-GGATTTT---C-TG--T-GG---AGCAA---GTGAATATT--TT-TAAA-TAAACTAC----T--TGCCTG--CAGG-C--AA---G-TGACGTTA-A---AAAA-ATC------TGTC-ATT-------GAAAAA---TA-----------GAATAAAA-C------CTGCTGT---ACAGTT--G---GACTGAA-ATC------AAA-AGTAT-ATAT--CA-----TTGT--ATGA-A-----ATATCTTCCGTTAC-GTAAACTAGT--ATTCCTGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTTACTATA-----TT-------TAATT--T-TAAGGCAGGTTGAACATTTATTGGTA
gi|11 : GGGGCTGAC-AAA-TCGC-CAT--------T--------GC-----CCGACGCC-----G-------GGC-------T----------T-GT-GAATTTT---T-GGG-C-AG---G-CAA---GTGAAT--T--TTATAA--TAA--CAC----T--TGCCTG--TGGG-CAAAA---G-TAAC-TTT-G---AAAA-TCC------AGTCGAGT---------AAAAA--TA-----------GAATAAAA-C------AT---GT---ACATTC------GACTGAA-ATT------ATA-GG--T-ATAT--CA-----TC-T--ACGA-G-----TTAT-----------GTAAA-TAGTC-AAGAATGTTAACCAGTTCTAATC--TGTCG-TTACGTG---------CTT--------TCTTACCAT-----------T--ATAATTCATATAGAGCA-GTTCAACCTTTATTAG
gi|12 : aGGGGCTGAC-AAA-TCGC-CAT--------T--------GC-----CCGACGCC-----G-------GGC-------T----------T-GT-GAATTTT---T-GGG-C-AG---G-CAA---GTGAAT--T--TTATAA--TAA--CAC----T--TGCCTG--TGGG-CAAAA---G-TAAC-TTT-G---AAAA-TCC------AGTCGAGT---------AAAAA--TA-----------GAATAAAA-C------AT---GT---ACATTC------GACTGAA-ATT------ATA-GG--T-ATAT--CA-----TC-T--ACGA-G-----TTAT-----------GTAAA-TAGTC-AAGAATGTTAACCAGTTCTAATC--TGTCG-TTACGTG---------CTT--------TCTTACCAT-----------T--ATAATTCATATAGAGCA-GTTCAACCTTTATTAGaa
gi|13 : aTGACGAAA-TA-C-CAT--------TTCT-----GC-----CCG----------G-------GGC-------A----------A--T-GGATTTT---A-TGGTC-CG---GGCAAT--GTGA-T--C--TT-CGA---------------------CG--CGTC-C--AA---GACAA---TG-A---AAA--TCC------AGTC-TGTCT-----GAAGAAAGATA-----------TGATAAAA-C--------GCTGTGCAACAGTCAAG---AGCTGAA-ATC------AAACAG--T-ATAT--CA-----TGGTGAACAA-------TTATCTTTGGTTAT-GTAAATCAGTCAAGCTATGTGAACCCATT-Taa
gi|14 : gggtggATG-TCACGAAAGTAAGTTAG------------TAGTTTTTTCAGTTTA-TTTCGCA-------------TTTGTTAAA---------GGTAGGGCAAG-TAAAAATGACA-GACAGGGCAAGAGAATTTT-GATC-ATGCACTTGCCACG-GAGCGAGTGCTCTATATAATCTATTTG-TCAGCCtgaa
gi|15 : tatgGGGGCTGAC-AAA-TC-C-TATAACACTGCT--------AC-----CTC----------G-------GGC-------A----------A-GT-AAATTTC---T-GGG-T-AG---TACTG---GTAAAT--T--TT-TGA--TAA-GCAG----T--TGTCCA--TGGG-C--AA---G-TAAT-TTA-G---GAAG-Tttcc
gi|16 : caGGGGCTGAC-AAAATC-CTCAT--------T--------TC-----TCG----------G-------AAC-------A----------CCGT-AG--------C-TGG--------GGCAA---GTGAAT--TATTT-TAA--TAA-CCAC----TCTTGCCCGTACGGG-C--AA---G-TAACTTTGTA---AAAA-TCC------AATTAAGT-------AAAagctccaagtaaga
gi|17 : atcaGGCTGAC-AAA-TC-C-CAT--------TGCCCGC--GC-----CCG----------G-------GGC------------------A-TT-GCATTTT---CATGG-C-AG---GGCAAT--GTGAAT--T--TT-TCA--TAA-TCc
gi|18 : GGGCTGAC-AAA-TC-G-TAT--------T--------GC-----CTG----------A-------TGCTCAAGGAA----------A-GT-AAATTTT---A-GGG-T-AG---GACAC---GTTAAT--T--TT-TGA--TTA-TCACTTAAT--TGTTTA--TGGG-C--AA---G--AAC-TTcgaccttactgccaatatgagttaagtcatgttattgagaa
gi|19 : a-TTG-A---AAAA-TCC------AGTA-ATT-------GAAAAA-------------------TAGAA-C------ATATTGC---ACATTC--G---GACTGAA---C------A---------------TA-----TCGT--ATGA-G-----TTATCTTCCATTAT-GTAAACTAGTC-AGCTATGTGAACCtgat
gi|2 : --T-ATAT--CA-----TTGT--ATGA-A-----TTATCTTCCGTTAC-GTAAACTAGTC-ATCTATGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTTACTATA-----TT-------TAATT--TTAAGAGCAGGTTGAACATTTATTGGTATATCAAA
gi|2 : aCAAAGTGAATGCAAAATTTTTTAAGTTGAAGAACTGTTAAAATC-TCAAGAAATTAAGTTAAG-----TTCACGAGAGTTGTAAAGTAGGGCAGCAAAAATAAAAGAATG-TTACAAA------CTA-------------CA-GGTACATTTTTTT-T---GTA-----------AATTTGTGAAA---------GGTAAAGCAAG-T-AAAGTCAAA-GGTAGGGCAAGTGAATTTTGG-TC-ATGCAC-CGTC-TGTGGGCAAGTGCTCT-GTAGATCTATTTG-TCAGCgcgcaaatataaccgaccattgaatcaacagctgacaacaaataagtacctgtgtgatgcctagtctgaattttctcacttttgtatttactgtcgggagtgtaagattttcaccaacccaaatacttaacaaaagaaatttttgtttctaaaacacacaaagtgaatgcaaaattttttaagttgaagaactgttaaaatctcaagaaattaagttaagttcacgagagttgtaaagtagggcagcaaaaataaaagaatgttacaaactacaggtacattttttttgtaaatttgtgaaaggtaaagcaagtaaagtcaaaggtagggcaagtgaattttggtcatgcaccgtctgtgggcaagtgctctgtagatctatttgtcagctagccccgga
gi|20 : atatatcattgtatgaattatcttccgttacgtaaactagtcatctatgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaagagcaggttgaacatttattggtatatcaaagcgcaaatataaccgaccattgaatcaacagctgacaacaaataagtacctgtgtgatgcctagtctgaattttctcacttttgtatttactgtcgggagtgtaagattttcaccaacccaaatacttaacaaaagaaatttttgtttctaaaacaca--T--TT-TAAAATAA-CCAC----T--TGTTCA--CAGGTC--AA---A-TGAC-TTG-A---AAAA-TCC------AGTC-A-T-------GAAAAAC--TG-----------GAATAAAA-C------CAGTTGT---ACAATA--G---GTCTGAA-ATC------AAA-tagccccgga
gi|21 : aGGGCAAG-T-AAAATCACA-GGCAGGGCAAGTGAATTTTAG-TC-CTGCACTTGCC-CGTGGGCAAGTGCTCT-AAAAATCTATTTG-TCAGCC
gi|22 : gGGGGCTGAC-AAA-TC-T-CAT--------T--------GT-----CCGATGCCCA---G-------GGC-------A----------A-AT-GGATTTT---C-TGG-T-CG---GGCGT---GTGAAT--A--TT-TAA--TAT-CCAT----T--
gi|24 : --T-ATAT--CA-----TCGT--ACAA-G-----TTATCTTC
gi|3 : a-ATAT--CA-----TTGT--ATGA-A-----ATATCTTCCGTTAC-GTAAACTAGT--ATTCCTGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTTACTATA-----TT-------TAATT--T-TAAGGCAGGTTGAACATTTATTGGTATATCAAAaagtcttcaagt
gi|3 : CAAAGTGTATGCAAAATTTTTTGAGTTGAAGAACTGTTAAAATC-TCAAGAAATTAAGTGAAGC----T-CACGAGAGTTGTAAAGTAGGGCAGCAAAAATAAAAGAATGTTCATGAA------CTA-------------C--TTTA--CATTTTT-T-TTGTA-----------AATTTCTGAAA---------GGTAAAGCAAG-T-AAAGTCAAAGGGTAGGGCAAGTGAATTTTGG-TC-ATGCAC-TGTC-CGTGGGCAAGTGCTCT-GTAGATCTATTTG-TCAGCgcgcaaatataaaccgccattgaatcaacagctgaacacaaataagtacctgtgtgatgcctagtctgaatttctcacttttgtatttactgtcgggagtgtaagtttttcaccaacccaatacttaacgaaagaaatttttgtttcttaaacacacaaagtgtatgcaaaattttttgagttgaagaactgttaaaatctcaagaaattaagtgaagctcacgagagttgtaaagtagggcagcaaaaataaaagaatgttcatgaactactttacattttttttgtaaatttctgaaaggtaaagcaagtaaagtcaaagggtagggcaagtgaattttggtcatgcactgtccgtgggcaagtgctctgtagatctatttgtcagctagccccggat
gi|4 : atatcattgtatgaaatatcttccgttacgtaaactagtattcctgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaaggcaggttgaacatttattggtatatcaaagcgcaaatataaaccgccattgaatcaacagctgaacacaaataagtacctgtgtgatgcctagtctgaatttctcacttttgtatttactgtcgggagtgtaagtttttcaccaacccaatacttaacgaaagaaatttttgtttcttaaacacaGGTGCTGAC-AAT-TTTC-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GACAA---GGAAAT--A--TT-TAA--TAA-CCAC----T--TGCCCG--TGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AATT-AGT-------GAAAAAA--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------GGA-AG--T-ATAT--CA-----TCGT--ACGA-G-----TTGTCTTTCGCTAT-GTAAACTAGTC-AGCTGTATGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTTACCAGC-----TTGAATG-ATAATT--TATAGATCAGGTTCAACATTTATTGGTAAA-CAAATTGGCGGCAGA---AGGCTGA---CA---TGA-------AAG-------------CA---------CAAA------TAACTTGAAGAACT--TTAA-TC-TCGTGAGACTA-GTTAAGC----TTCACGG--GTTCCAAAGTTGGGCAGCAATAATATATGAATA-TTACAAA------CTA-------------CA-TTTATTTGTTTTG-TGTCATA-----------ATTTTGTTGAA---------GGTAGGGCAAG-T-AAAATCACA-GGAAGGGCAAGTGAATTTTGG-TC-ATGCACATACC-CGTGGGCAAGTGCTCT-TAAAATCTATTTG-TCAATCCtagccccggat
gi|5 : GGGGC-GAC-AAA-TC-C-CAT--------T--------GCGACGCCCG----------G-------GG--------A----------T-GT-GAATTTTT--C-TGG-C-AG---GGCAA---GTGAAT--T--TA-ACA--TAA-CCAC----T--TGCCCG--TGGG-C--AA---G-TAAC-T-G-A---AAAA-TCC------AGTC-AGT---------AAAAT--TA-----------GAAAAAAAAC------ATGTCGT---ACATT-------GACTGA----T------AGA-GG--TCAT-T--CG-----TC----ACGAAG-----TTGTCTTTCGTTAT-GTACTATAGTC-AGCTATGCGA-CCAGTT-TAATCTGT--CA-TTA-GAG-----A-----------------------A-----TT--GT--ATAG--------GAGCAGGTTCAACTTTTATTGGTAGA-CAAATTGG-AGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAGACACT--TAAA-TCTTCATGAAATAG-GTTGAG------TTAT-GGAGTTTTAAAGTA-GGCAGCAAAAGT-AATGAATG-TCACG-A------CAG-------------CA-ATTTTTAGTTTTA-TATCGTA-----------ATTTTGTTAAA---------AGTA-GGCAAGTT-AAAATTACA-GGCAGGGCAA-TGAATTTT-G-TCAATGCACTTG-C-CGTGGGCAAGTG-TCT-AAAAATCTATTTGATCAGCCCct
gi|6 : aGGGGC-GAC-AAA-TC-C-CAT--------T--------GCGACGCCCG----------G-------GG--------A----------T-GT-GAATTTTT--C-TGG-C-AG---GGCAA---GTGAAT--T--TA-ACA--TAA-CCAC----T--TGCCCG--TGGG-C--AA---G-TAAC-T-G-A---AAAA-TCC------AGTC-AGT---------AAAAT--TA-----------GAAAAAAAAC------ATGTCGT---ACATT-------GACTGA----T------AGA-GG--TCAT-T--CG-----TC----ACGAAG-----TTGTCTTTCGTTAT-GTACTATAGTC-AGCTATGCGA-CCAGTT-TAATCTGT--CA-TTA-GAG-----A-----------------------A-----TT--GT--ATAG--------GAGCAGGTTCAACTTTTATTGGTAGA-CAAATTGG-AGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAGACACT--TAAA-TCTTCATGAAATAG-GTTGAG------TTAT-GGAGTTTTAAAGTA-GGCAGCAAAAGT-AATGAATG-TCACG-A------CAG-------------CA-ATTTTTAGTTTTA-TATCGTA-----------ATTTTGTTAAA---------AGTA-GGCAAGTT-AAAATTACA-GGCAGGGCAA-TGAATTTT-G-TCAATGCACTTG-C-CGTGGGCAAGTG-TCT-AAAAATCTATTTGATCAGCCC
gi|7 : aGGGCTGAT-AAA-TC-C-CAT--------T--------GC-----CTG----------ACGCCCATGGC-------A----------T-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCA--TGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT---------AAAAA--TA-----------GAATAAAG-C------AAGTCGT---ACATTC--G---GACTGAA-ATC------GAA-GG--T-ATAT--CA-----TCGT--ACTA-G-----TTGTCTTTCGTTAT-GTACACTAGTC-AGCTATGTGAACCAA--------TG-------TACGAG-----A---TTT--------CCTTACCA-----------ATA-ATAATTTATATAGAGCAGGTTCAACTTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCCGA---CT---TTA-------AAG-------------------------AAA------TA----------------AA-TC-TCATGAAACTA-GTT-AGCCGAGTTCACAGGAGTTCTAAA
gi|8 : GGGGCTGAC-AAA-TC-C-CAT--------CTTAACTTCGCTT---CCGAACCAGCACCG-------GGT-------AGC--------A-GTAGGATTCTGGTC-TGG-CTAGTATAGCAAAGGGTTAAT--T--TT-TAA--TAA-TCAC----T--TGCCCG--CGG--C--AATGAG-TAAC-TTG-AGATAAAA-TCCGCATCAAGTT-AATCGATAACAAAAAAG--CAAGTTGCACAATGAATAAAA-CGGTTCCATGTCGA---ACATTC--GTTAGAACAAATATCGACCGGAAA-AG--T--TAT--CAATTACTCG---ACGA-GCAGAATTATCTTC-GTTATTGTAAACTATTC-AGCTATGTGAACCAGTT-TAAT-TCTTTTGCTTACGAG-----A---TTT--------Taacagtgtattattggactctggaattattttaattgttggaatctgttaaaattttgtttataggc
gi|9 : GGGCTGAA-AAA-TC-C-CAT--------T--------GC-----CCG----------ACACTCTTAGT-------G----------A-GT-GGATTTT---C-TGG-T-AG---AGCAA---GTGAATATT--TT-TAAA-TAA-CTAC----T--TGCCTG--CAGG-C--AA---G-TGAC-TTA-A---AAAAATCT------AGTC-ATT-------GAAAAA---TA-----------GAATAAAA-C------CTGCTGT---ACAGTT--G---GACTGAA-ATC------AAA-AG--T-ATATATCA-----TTGT--ATGA-A-----TTATCTTCCGTTAC-GTAAACTAGTC-ATCTATGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTTACTATA-----TT-------TAATT--TTAAGAGCAGGTTGAACATTTATTGGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AACCAGTTTACTCTCTGTCCTTACAAGTCTTTATTCAATACAAATCTT
Alignments
lowQualScore : 66666666666666666666666666666666666666666666666666666666666666666666 111 111 222222222 1111111111111111 1111111 1111111 9999999999999999999999999999999999999999999999999999999 1 1 111 11111111 4444444444444444444444444444444444 333333 11 1 1 1 2222222 1 3333333333333333333333 111111 1 22222222222 222222222 1 1 1 1
lowQualScore : 2 2 8 2 22222222222222222222222222222222222222222222222222222222222222222222 2 000 2 444 444 000 66 33 5 88 44 5555 33 33 2 77 555 2 5 2 555 2 888888 9 0 666666666 9999999999999999 6 0000000 0 555 6666666 3 999999 3 3 44 5 33 66666 4444 9999999 2 88 3 2 0 0 6 2 3 4444444444444444444444444444444444444444444444444444444 1 1 1 0 444 44444444 4444444444444444444444444444444444 222222 0 1 55 1 1 0 1 2 6666666 6 1 0 7 1 5 5 9999999999999999999999 77 000000 1 2 77777777777 1 1 222222222 6 0 5 5 2 0 0 6 6 5 4 66 1
lowQualScore : . . . . .................................................................... . ... . ... ... ... .. .. . .. .. .... .. .. . .. ... . . . ... . ...... . . ......... ................ . ....... . ... ....... . ...... . . .. . .. ..... .... ....... . .. . . . . . . . ....................................................... . . . . ... ........ .................................. ...... . . .. . . . . . ....... . . . . . . . ...................... .. ...... . . ........... . . ......... . . . . . . . . . . . .. .
lowQualScore : 7 7 0 7 77777777777777777777777777777777777777777777777777777777777777777777 7 000 7 000 777 000 99 44 0 44 99 7777 77 99 9 99 000 9 3 9 000 9 888888 2 8 222222222 7777777777777777 7 7777777 8 888 0000000 3 666666 2 3 22 3 77 77777 5555 6666666 5 00 6 9 6 2 2 5 3 1111111111111111111111111111111111111111111111111111111 4 0 4 0 000 22222222 5555555555555555555555555555555555 999999 7 3 77 4 4 6 4 3 4444444 6 0 8 3 0 7 0 6666666666666666666666 66 444444 0 4 11111111111 9 6 999999999 5 0 0 0 5 8 0 5 5 0 3 77 4
consensus : GGGGCTGAC-AAA-TC-C-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCG--CGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT-------GAAAAAA--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------AAA-GG--T-ATAT--CA-----TCGT--ACGA-G-----TTATCTTCCGTTAC-GTAAACTAGTC-AGCTATGTGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTT-ACC-AT--ATT---T----ATAATT--TATAGAGCAGGTTCAACNTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAAGAACT--TAAA-TC-TCATGAAACTA-GTTAAGC----TTCACGGGAGTTNTAAAGTAGGGCAGCAAAAATAAANGAATG-TCACGAA------CTA-------------CA-TTTNTTCG-TTTTNTGTCGTA-----------ATTTTGTTAA---------AGGTAGGGCAAG-TAAAA-TCACA-GGCAGGGCAAGTGAATTTTGGTC-ATGCACTTGCC-CGTGGGCAAGTGCTCT-NAAAATCTATTTG-TCAGCCC
Reference ( family-507 ) : GGGGCTGAC-AAA-TC-C-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCG--CGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT-------GAAAAAA--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------AAA-GG--T-ATAT--CA-----TCGT--ACGA-G-----TTATCTTCCGTTAC-GTAAACTAGTC-AGCTATGTGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTT-ACC-AT--ATT---T----ATAATT--TATAGAGCAGGTTCAACNTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAAGAACT--TAAA-TC-TCATGAAACTA-GTTAAGC----TTCACGGGAGTTNTAAAGTAGGGCAGCAAAAATAAANGAATG-TCACGAA------CTA-------------CA-TTTNTTCG-TTTTNTGTCGTA-----------ATTTTGTTAA---------AGGTAGGGCAAG-TAAAA-TCACA-GGCAGGGCAAGTGAATTTTGGTC-ATGCACTTGCC-CGTGGGCAAGTGCTCT-NAAAATCTATTTG-TCAGCCC
gi|1 : -ATAT--TA-----TCGT--ACAA-G-----TTATCTTC----A---------AGTC-AACTATGTGAACAAGTT-TAATCTGTGTCG-TTATATG-----AATCTTT--------TGTTCAAT-ATGGATT---TACCAATAATT--TAAAGTGCAGGTTGAACACTTATTGGTAGA-CAAATTGGCAACAGATTCAGGCTGATGTCTAAATTAAATGGAGAAAATTTTAGCAATTTCAAAGTG----CAAA------TAAC
gi|1 : GAACA--TAAA-TT-TCATCAAACCA-GTTATGC----T-CATGGGAATTGTAAAATATGACAG-AAAAATAAAAGAATG-GCGCAAA------CTAAACTAGTTTGTGCCA-TTCTTTTATTTTTCTGTCATATTTTAACAATTATTTCATAAAACTTTTGGTAGGTAGGGAAAG-TAATA-TCACA--GTAGGGCAAGTGAATTTT-ATC-ATGCA-TTGCC-Ccaaccattgaaatgaaagctgacaacaaatattaacgatgccaagcgtagtgtgacagttttggaacctttgtatttactggtgggagtgtgaaattatcaccaacccttgaatttaaccaaataaattttattactgaaaacataaactggatgcaatttttttttttagttgaacataaatttcatcaaaccagttatgctcatgggaattgtaaaatatgacagaaaaataaaagaatggcgcaaactaaactagtttgtgccattcttttatttttctgtcatattttaacaattatttcataaaacttttggtaggtagggaaagtaatatcacagtagggcaagtgaattttatcatgcattgccc
gi|10 : atattatcgtacaagttatcttcaagtcaactatgtgaacaagtttaatctgtgtcgttatatgaatcttttgttcaatatggatttaccaataatttaaagtgcaggttgaacacttattggtagacaaattggcaacagattcaggctgatgtctaaattaaatggagaaaattttagcaatttcaaagtgcaaataaccaaccattgaaatgaaagctgacaacaaatattaacgatgccaagcgtagtgtgacagttttggaacctttgtatttactggtgggagtgtgaaattatcaccaacccttgaatttaaccaaataaattttattactgaaaacataaactggatgcaatttttttttttagttGGGCTGAA-AAA-TC-C-CAT--------T--------GC-----C--------------------GAC-------ACTCCTTAGTGA-GT-GGATTTT---C-TG--T-GG---AGCAA---GTGAATATT--TT-TAAA-TAAACTAC----T--TGCCTG--CAGG-C--AA---G-TGACGTTA-A---AAAA-ATC------TGTC-ATT-------GAAAAA---TA-----------GAATAAAA-C------CTGCTGT---ACAGTT--G---GACTGAA-ATC------AAA-AGTAT-ATAT--CA-----TTGT--ATGA-A-----ATATCTTCCGTTAC-GTAAACTAGT--ATTCCTGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTT-ACT-AT--ATT---------TAATT--T-TAAGGCAGGTTGAACATTTATTGGTA
gi|11 : GGGGCTGAC-AAA-TCGC-CAT--------T--------GC-----CCGACGCC-----G-------GGC-------T----------T-GT-GAATTTT---T-GGG-C-AG---G-CAA---GTGAAT--T--TTATAA--TAA--CAC----T--TGCCTG--TGGG-CAAAA---G-TAAC-TTT-G---AAAA-TCC------AGTCGAGT---------AAAAA--TA-----------GAATAAAA-C------AT---GT---ACATTC------GACTGAA-ATT------ATA-GG--T-ATAT--CA-----TC-T--ACGA-G-----TTAT-----------GTAAA-TAGTC-AAGAATGTTAACCAGTTCTAATC--TGTCG-TTACGTG---------CTT--------TCTT-ACC-A-----T---T----ATAATTCATATAGAGCA-GTTCAACCTTTATTAG
gi|12 : aGGGGCTGAC-AAA-TCGC-CAT--------T--------GC-----CCGACGCC-----G-------GGC-------T----------T-GT-GAATTTT---T-GGG-C-AG---G-CAA---GTGAAT--T--TTATAA--TAA--CAC----T--TGCCTG--TGGG-CAAAA---G-TAAC-TTT-G---AAAA-TCC------AGTCGAGT---------AAAAA--TA-----------GAATAAAA-C------AT---GT---ACATTC------GACTGAA-ATT------ATA-GG--T-ATAT--CA-----TC-T--ACGA-G-----TTAT-----------GTAAA-TAGTC-AAGAATGTTAACCAGTTCTAATC--TGTCG-TTACGTG---------CTT--------TCTT-ACC-A-----T---T----ATAATTCATATAGAGCA-GTTCAACCTTTATTAGaa
gi|13 : aTGACGAAA-TA-C-CAT--------TTCT-----GC-----CCG----------G-------GGC-------A----------A--T-GGATTTT---A-TGGTC-CG---GGCAAT--GTGA-T--C--TT-CGA---------------------CG--CGTC-C--AA---GACAA---TG-A---AAA--TCC------AGTC-TGTCT-----GAAGAAAGATA-----------TGATAAAA-C--------GCTGTGCAACAGTCAAG---AGCTGAA-ATC------AAACAG--T-ATAT--CA-----TGGTGAACAA-------TTATCTTTGGTTAT-GTAAATCAGTCAAGCTATGTGAACCCATT-Taa
gi|14 : gggtggATG-TCACGAAAGTAAGTTAG------------TAGTTTTTTCA-GTTTATTTCGCA-------------TTTGTTAA---------AGGTAGGGCAAG-TAAAAATGACA-GACAGGGCAAGAGAATTTTGATC-ATGCACTTGCCACG-GAGCGAGTGCTCTATATAATCTATTTG-TCAGCCtgaa
gi|15 : tatgGGGGCTGAC-AAA-TC-C-TATAACACTGCT--------AC-----CTC----------G-------GGC-------A----------A-GT-AAATTTC---T-GGG-T-AG---TACTG---GTAAAT--T--TT-TGA--TAA-GCAG----T--TGTCCA--TGGG-C--AA---G-TAAT-TTA-G---GAAG-Tttcc
gi|16 : caGGGGCTGAC-AAAATC-CTCAT--------T--------TC-----TCG----------G-------AAC-------A----------CCGT-AG--------C-TGG--------GGCAA---GTGAAT--TATTT-TAA--TAA-CCAC----TCTTGCCCGTACGGG-C--AA---G-TAACTTTGTA---AAAA-TCC------AATTAAGT-------AAAagctccaagtaaga
gi|17 : atcaGGCTGAC-AAA-TC-C-CAT--------TGCCCGC--GC-----CCG----------G-------GGC------------------A-TT-GCATTTT---CATGG-C-AG---GGCAAT--GTGAAT--T--TT-TCA--TAA-TCc
gi|18 : GGGCTGAC-AAA-TC-G-TAT--------T--------GC-----CTG----------A-------TGCTCAAGGAA----------A-GT-AAATTTT---A-GGG-T-AG---GACAC---GTTAAT--T--TT-TGA--TTA-TCACTTAAT--TGTTTA--TGGG-C--AA---G--AAC-TTcgaccttactgccaatatgagttaagtcatgttattgagaa
gi|19 : a-TTG-A---AAAA-TCC------AGTA-ATT-------GAAAAA-------------------TAGAA-C------ATATTGC---ACATTC--G---GACTGAA---C------A---------------TA-----TCGT--ATGA-G-----TTATCTTCCATTAT-GTAAACTAGTC-AGCTATGTGAACCtgat
gi|2 : --T-ATAT--CA-----TTGT--ATGA-A-----TTATCTTCCGTTAC-GTAAACTAGTC-ATCTATGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTT-ACT-AT--ATT---T----A-ATTT--TA-AGAGCAGGTTGAACATTTATTGGTATATCAAA
gi|2 : aCAAAGTGAATGCAAAATTTTTTAAGTTGAAGAACTGTTAAAATC-TCAAGAAATTAAGTTAAG-----TTCACGAGAGTTGTAAAGTAGGGCAGCAAAAATAAAAGAATG-TTACAAA------CTA-------------CA-GGTA--CA-TTTTTT-TTGTA-----------AATTTGTGAA---------AGGTAAAGCAAG-TAAAG-TCAAA-GGTAGGGCAAGTGAATTTTGGTC-ATGCAC-CGTC-TGTGGGCAAGTGCTCT-GTAGATCTATTTG-TCAGCgcgcaaatataaccgaccattgaatcaacagctgacaacaaataagtacctgtgtgatgcctagtctgaattttctcacttttgtatttactgtcgggagtgtaagattttcaccaacccaaatacttaacaaaagaaatttttgtttctaaaacacacaaagtgaatgcaaaattttttaagttgaagaactgttaaaatctcaagaaattaagttaagttcacgagagttgtaaagtagggcagcaaaaataaaagaatgttacaaactacaggtacattttttttgtaaatttgtgaaaggtaaagcaagtaaagtcaaaggtagggcaagtgaattttggtcatgcaccgtctgtgggcaagtgctctgtagatctatttgtcagctagccccgga
gi|20 : atatatcattgtatgaattatcttccgttacgtaaactagtcatctatgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaagagcaggttgaacatttattggtatatcaaagcgcaaatataaccgaccattgaatcaacagctgacaacaaataagtacctgtgtgatgcctagtctgaattttctcacttttgtatttactgtcgggagtgtaagattttcaccaacccaaatacttaacaaaagaaatttttgtttctaaaacaca--T--TT-TAAAATAA-CCAC----T--TGTTCA--CAGGTC--AA---A-TGAC-TTG-A---AAAA-TCC------AGTC-A-T-------GAAAAAC--TG-----------GAATAAAA-C------CAGTTGT---ACAATA--G---GTCTGAA-ATC------AAA-tagccccgga
gi|21 : aGGGCAAG-TAAAA-TCACA-GGCAGGGCAAGTGAATTTTAGTC-CTGCACTTGCC-CGTGGGCAAGTGCTCT-AAAAATCTATTTG-TCAGCC
gi|22 : gGGGGCTGAC-AAA-TC-T-CAT--------T--------GT-----CCGATGCCCA---G-------GGC-------A----------A-AT-GGATTTT---C-TGG-T-CG---GGCGT---GTGAAT--A--TT-TAA--TAT-CCAT----T--
gi|24 : --T-ATAT--CA-----TCGT--ACAA-G-----TTATCTTC
gi|3 : a-ATAT--CA-----TTGT--ATGA-A-----ATATCTTCCGTTAC-GTAAACTAGT--ATTCCTGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTT-ACT-AT--ATT---------TAATT--T-TAAGGCAGGTTGAACATTTATTGGTATATCAAAaagtcttcaagt
gi|3 : CAAAGTGTATGCAAAATTTTTTGAGTTGAAGAACTGTTAAAATC-TCAAGAAATTAAGTGAAGC----T-CACGAGAGTTGTAAAGTAGGGCAGCAAAAATAAAAGAATGTTCATGAA------CTA-------------C--TTTA--CA-TTTTTT-TTGTA-----------AATTTCTGAA---------AGGTAAAGCAAG-TAAAG-TCAAAGGGTAGGGCAAGTGAATTTTGGTC-ATGCAC-TGTC-CGTGGGCAAGTGCTCT-GTAGATCTATTTG-TCAGCgcgcaaatataaaccgccattgaatcaacagctgaacacaaataagtacctgtgtgatgcctagtctgaatttctcacttttgtatttactgtcgggagtgtaagtttttcaccaacccaatacttaacgaaagaaatttttgtttcttaaacacacaaagtgtatgcaaaattttttgagttgaagaactgttaaaatctcaagaaattaagtgaagctcacgagagttgtaaagtagggcagcaaaaataaaagaatgttcatgaactactttacattttttttgtaaatttctgaaaggtaaagcaagtaaagtcaaagggtagggcaagtgaattttggtcatgcactgtccgtgggcaagtgctctgtagatctatttgtcagctagccccggat
gi|4 : atatcattgtatgaaatatcttccgttacgtaaactagtattcctgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaaggcaggttgaacatttattggtatatcaaagcgcaaatataaaccgccattgaatcaacagctgaacacaaataagtacctgtgtgatgcctagtctgaatttctcacttttgtatttactgtcgggagtgtaagtttttcaccaacccaatacttaacgaaagaaatttttgtttcttaaacacaGGTGCTGAC-AAT-TTTC-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GACAA---GGAAAT--A--TT-TAA--TAA-CCAC----T--TGCCCG--TGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AATT-AGT-------GAAAAAA--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------GGA-AG--T-ATAT--CA-----TCGT--ACGA-G-----TTGTCTTTCGCTAT-GTAAACTAGTC-AGCTGTATGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTT-ACC-AG--CTTGAATG---ATAATT--TATAGATCAGGTTCAACATTTATTGGTAAA-CAAATTGGCGGCAGA---AGGCTGA---CA---TGA-------AAG-------------CA---------CAAA------TAACTTGAAGAACT--TTAA-TC-TCGTGAGACTA-GTTAAGC----TTCACGG--GTTCCAAAGTTGGGCAGCAATAATATATGAATA-TTACAAA------CTA-------------CA-TTTATTTG-TTTTGTGTCATA-----------ATTTTGTTGA---------AGGTAGGGCAAG-TAAAA-TCACA-GGAAGGGCAAGTGAATTTTGGTC-ATGCACATACC-CGTGGGCAAGTGCTCT-TAAAATCTATTTG-TCAATCCtagccccggat
gi|5 : GGGGC-GAC-AAA-TC-C-CAT--------T--------GCGACGCCCG----------G-------GG--------A----------T-GT-GAATTTTT--C-TGG-C-AG---GGCAA---GTGAAT--T--TA-ACA--TAA-CCAC----T--TGCCCG--TGGG-C--AA---G-TAAC-T-G-A---AAAA-TCC------AGTC-AGT---------AAAAT--TA-----------GAAAAAAAAC------ATGTCGT---ACATT-------GACTGA----T------AGA-GG--TCAT-T--CG-----TC----ACGAAG-----TTGTCTTTCGTTAT-GTACTATAGTC-AGCTATGCGA-CCAGTT-TAATCTGT--CA-TTA-GAG-----A---------------------------ATTG--T----ATAG--------GAGCAGGTTCAACTTTTATTGGTAGA-CAAATTGG-AGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAGACACT--TAAA-TCTTCATGAAATAG-GTTGAG------TTAT-GGAGTTTTAAAGTA-GGCAGCAAAAGT-AATGAATG-TCACG-A------CAG-------------CA-ATTTTTAG-TTTTATATCGTA-----------ATTTTGTTAA---------AAGTA-GGCAAGTTAAAA-TTACA-GGCAGGGCAA-TGAATTTT-GTCAATGCACTTG-C-CGTGGGCAAGTG-TCT-AAAAATCTATTTGATCAGCCCct
gi|6 : aGGGGC-GAC-AAA-TC-C-CAT--------T--------GCGACGCCCG----------G-------GG--------A----------T-GT-GAATTTTT--C-TGG-C-AG---GGCAA---GTGAAT--T--TA-ACA--TAA-CCAC----T--TGCCCG--TGGG-C--AA---G-TAAC-T-G-A---AAAA-TCC------AGTC-AGT---------AAAAT--TA-----------GAAAAAAAAC------ATGTCGT---ACATT-------GACTGA----T------AGA-GG--TCAT-T--CG-----TC----ACGAAG-----TTGTCTTTCGTTAT-GTACTATAGTC-AGCTATGCGA-CCAGTT-TAATCTGT--CA-TTA-GAG-----A---------------------------ATTG--T----ATAG--------GAGCAGGTTCAACTTTTATTGGTAGA-CAAATTGG-AGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAGACACT--TAAA-TCTTCATGAAATAG-GTTGAG------TTAT-GGAGTTTTAAAGTA-GGCAGCAAAAGT-AATGAATG-TCACG-A------CAG-------------CA-ATTTTTAG-TTTTATATCGTA-----------ATTTTGTTAA---------AAGTA-GGCAAGTTAAAA-TTACA-GGCAGGGCAA-TGAATTTT-GTCAATGCACTTG-C-CGTGGGCAAGTG-TCT-AAAAATCTATTTGATCAGCCC
gi|7 : aGGGCTGAT-AAA-TC-C-CAT--------T--------GC-----CTG----------ACGCCCATGGC-------A----------T-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCA--TGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT---------AAAAA--TA-----------GAATAAAG-C------AAGTCGT---ACATTC--G---GACTGAA-ATC------GAA-GG--T-ATAT--CA-----TCGT--ACTA-G-----TTGTCTTTCGTTAT-GTACACTAGTC-AGCTATGTGAACCAA--------TG-------TACGAG-----A---TTT--------CCTT-ACCAAT--A----------ATAATTTATATAGAGCAGGTTCAACTTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCCGA---CT---TTA-------AAG-------------------------AAA------TA----------------AA-TC-TCATGAAACTA-GTT-AGCCGAGTTCACAGGAGTTCTAAA
gi|8 : GGGGCTGAC-AAA-TC-C-CAT--------CTTAACTTCGCTT---CCGAACCAGCACCG-------GGT-------AGC--------A-GTAGGATTCTGGTC-TGG-CTAGTATAGCAAAGGGTTAAT--T--TT-TAA--TAA-TCAC----T--TGCCCG--CGG--C--AATGAG-TAAC-TTG-AGATAAAA-TCCGCATCAAGTT-AATCGATAACAAAAAAG--CAAGTTGCACAATGAATAAAA-CGGTTCCATGTCGA---ACATTC--GTTAGAACAAATATCGACCGGAAA-AG--T--TAT--CAATTACTCG---ACGA-GCAGAATTATCTTC-GTTATTGTAAACTATTC-AGCTATGTGAACCAGTT-TAAT-TCTTTTGCTTACGAG-----A---TTT--------Taacagtgtattattggactctggaattattttaattgttggaatctgttaaaattttgtttataggc
gi|9 : GGGCTGAA-AAA-TC-C-CAT--------T--------GC-----CCG----------ACACTCTTAGT-------G----------A-GT-GGATTTT---C-TGG-T-AG---AGCAA---GTGAATATT--TT-TAAA-TAA-CTAC----T--TGCCTG--CAGG-C--AA---G-TGAC-TTA-A---AAAAATCT------AGTC-ATT-------GAAAAA---TA-----------GAATAAAA-C------CTGCTGT---ACAGTT--G---GACTGAA-ATC------AAA-AG--T-ATATATCA-----TTGT--ATGA-A-----TTATCTTCCGTTAC-GTAAACTAGTC-ATCTATGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTT-ACT-AT--ATT---T----A-ATTT--TA-AGAGCAGGTTGAACATTTATTGGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AACCAGTTTACTCTCTGTCCTTACAAGTCTTTATTCAATACAAATCTT
Alignments
lowQualScore : 66666666666666666666666666666666666666666666666666666666666666666666 111 111 222222222 1111111111111111 1111111 1111111 9999999999999999999999999999999999999999999999999999999 1 1 111 11111111 4444444444444444444444444444444444 333333 11 1 1 1 2222222 1 3333333333333333333333 111111 1 22222222222 222222222 1 1 1 1
lowQualScore : 2 2 8 2 22222222222222222222222222222222222222222222222222222222222222222222 2 000 2 444 444 000 66 33 5 88 44 5555 33 33 2 77 555 2 5 2 555 2 888888 9 0 666666666 9999999999999999 6 0000000 0 555 6666666 3 999999 3 3 44 5 33 66666 4444 9999999 2 88 3 2 0 0 6 2 3 4444444444444444444444444444444444444444444444444444444 1 1 1 0 444 44444444 4444444444444444444444444444444444 222222 0 1 55 1 1 0 1 2 6666666 6 1 0 7 1 5 5 9999999999999999999999 77 000000 1 2 77777777777 1 1 222222222 6 0 5 5 2 0 0 6 6 5 4 66 1
lowQualScore : . . . . .................................................................... . ... . ... ... ... .. .. . .. .. .... .. .. . .. ... . . . ... . ...... . . ......... ................ . ....... . ... ....... . ...... . . .. . .. ..... .... ....... . .. . . . . . . . ....................................................... . . . . ... ........ .................................. ...... . . .. . . . . . ....... . . . . . . . ...................... .. ...... . . ........... . . ......... . . . . . . . . . . . .. .
lowQualScore : 7 7 0 7 77777777777777777777777777777777777777777777777777777777777777777777 7 000 7 000 777 000 99 44 0 44 99 7777 77 99 9 99 000 9 3 9 000 9 888888 2 8 222222222 7777777777777777 7 7777777 8 888 0000000 3 666666 2 3 22 3 77 77777 5555 6666666 5 00 6 9 6 2 2 5 3 1111111111111111111111111111111111111111111111111111111 4 0 4 0 000 22222222 5555555555555555555555555555555555 999999 7 3 77 4 4 6 4 3 4444444 6 0 8 3 0 7 0 6666666666666666666666 66 444444 0 4 11111111111 9 6 999999999 5 0 0 0 5 8 0 5 5 0 3 77 4
consensus : GGGGCTGAC-AAA-TC-C-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCG--CGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT-------GAAAAAA--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------AAA-GG--T-ATAT--CA-----TCGT--ACGA-G-----TTATCTTCCGTTAC-GTAAACTAGTC-AGCTATGTGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTT-ACC-AT--ATT---T----ATAATT--TATAGAGCAGGTTCAACNTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAAGAACT--TAAA-TC-TCATGAAACTA-GTTAAGC----TTCACGGGAGTTNTAAAGTAGGGCAGCAAAAATAAANGAATG-TCACGAA------CTA-------------CA-TTTNTTCG-TTTTNTGTCGTA-----------ATTTTGTTAA---------AGGTAGGGCAAG-TAAAA-TCACA-GGCAGGGCAAGTGAATTTTGGTC-ATGCACTTGCC-CGTGGGCAAGTGCTCT-NAAAATCTATTTG-TCAGCCC
Reference ( family-507 ) : GGGGCTGAC-AAA-TC-C-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCG--CGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT-------GAAAAAA--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------AAA-GG--T-ATAT--CA-----TCGT--ACGA-G-----TTATCTTCCGTTAC-GTAAACTAGTC-AGCTATGTGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTT-ACC-AT--ATT---T----ATAATT--TATAGAGCAGGTTCAACNTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAAGAACT--TAAA-TC-TCATGAAACTA-GTTAAGC----TTCACGGGAGTTNTAAAGTAGGGCAGCAAAAATAAANGAATG-TCACGAA------CTA-------------CA-TTTNTTCG-TTTTNTGTCGTA-----------ATTTTGTTAA---------AGGTAGGGCAAG-TAAAA-TCACA-GGCAGGGCAAGTGAATTTTGGTC-ATGCACTTGCC-CGTGGGCAAGTGCTCT-NAAAATCTATTTG-TCAGCCC
gi|1 : -ATAT--TA-----TCGT--ACAA-G-----TTATCTTC----A---------AGTC-AACTATGTGAACAAGTT-TAATCTGTGTCG-TTATATG-----AATCTTT--------TGTTCAAT-ATGGATT---TACCAATAATT--TAAAGTGCAGGTTGAACACTTATTGGTAGA-CAAATTGGCAACAGATTCAGGCTGATGTCTAAATTAAATGGAGAAAATTTTAGCAATTTCAAAGTG----CAAA------TAAC
gi|1 : GAACA--TAAA-TT-TCATCAAACCA-GTTATGC----T-CATGGGAATTGTAAAATATGACAG-AAAAATAAAAGAATG-GCGCAAA------CTAAACTAGTTTGTGCCA-TTCTTTTATTTTTCTGTCATATTTTAACAATTATTTCATAAAACTTTTGGTAGGTAGGGAAAG-TAATA-TCACA--GTAGGGCAAGTGAATTTT-ATC-ATGCA-TTGCC-Ccaaccattgaaatgaaagctgacaacaaatattaacgatgccaagcgtagtgtgacagttttggaacctttgtatttactggtgggagtgtgaaattatcaccaacccttgaatttaaccaaataaattttattactgaaaacataaactggatgcaatttttttttttagttgaacataaatttcatcaaaccagttatgctcatgggaattgtaaaatatgacagaaaaataaaagaatggcgcaaactaaactagtttgtgccattcttttatttttctgtcatattttaacaattatttcataaaacttttggtaggtagggaaagtaatatcacagtagggcaagtgaattttatcatgcattgccc
gi|10 : atattatcgtacaagttatcttcaagtcaactatgtgaacaagtttaatctgtgtcgttatatgaatcttttgttcaatatggatttaccaataatttaaagtgcaggttgaacacttattggtagacaaattggcaacagattcaggctgatgtctaaattaaatggagaaaattttagcaatttcaaagtgcaaataaccaaccattgaaatgaaagctgacaacaaatattaacgatgccaagcgtagtgtgacagttttggaacctttgtatttactggtgggagtgtgaaattatcaccaacccttgaatttaaccaaataaattttattactgaaaacataaactggatgcaatttttttttttagttGGGCTGAA-AAA-TC-C-CAT--------T--------GC-----C--------------------GAC-------ACTCCTTAGTGA-GT-GGATTTT---C-TG--T-GG---AGCAA---GTGAATATT--TT-TAAA-TAAACTAC----T--TGCCTG--CAGG-C--AA---G-TGACGTTA-A---AAAA-ATC------TGTC-ATT-------GAAAAA---TA-----------GAATAAAA-C------CTGCTGT---ACAGTT--G---GACTGAA-ATC------AAA-AGTAT-ATAT--CA-----TTGT--ATGA-A-----ATATCTTCCGTTAC-GTAAACTAGT--ATTCCTGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTT-ACT-AT--ATT---------TAATT--T-TAAGGCAGGTTGAACATTTATTGGTA
gi|11 : GGGGCTGAC-AAA-TCGC-CAT--------T--------GC-----CCGACGCC-----G-------GGC-------T----------T-GT-GAATTTT---T-GGG-C-AG---G-CAA---GTGAAT--T--TTATAA--TAA--CAC----T--TGCCTG--TGGG-CAAAA---G-TAAC-TTT-G---AAAA-TCC------AGTCGAGT---------AAAAA--TA-----------GAATAAAA-C------AT---GT---ACATTC------GACTGAA-ATT------ATA-GG--T-ATAT--CA-----TC-T--ACGA-G-----TTAT-----------GTAAA-TAGTC-AAGAATGTTAACCAGTTCTAATC--TGTCG-TTACGTG---------CTT--------TCTT-ACC-A-----T---T----ATAATTCATATAGAGCA-GTTCAACCTTTATTAG
gi|12 : aGGGGCTGAC-AAA-TCGC-CAT--------T--------GC-----CCGACGCC-----G-------GGC-------T----------T-GT-GAATTTT---T-GGG-C-AG---G-CAA---GTGAAT--T--TTATAA--TAA--CAC----T--TGCCTG--TGGG-CAAAA---G-TAAC-TTT-G---AAAA-TCC------AGTCGAGT---------AAAAA--TA-----------GAATAAAA-C------AT---GT---ACATTC------GACTGAA-ATT------ATA-GG--T-ATAT--CA-----TC-T--ACGA-G-----TTAT-----------GTAAA-TAGTC-AAGAATGTTAACCAGTTCTAATC--TGTCG-TTACGTG---------CTT--------TCTT-ACC-A-----T---T----ATAATTCATATAGAGCA-GTTCAACCTTTATTAGaa
gi|13 : aTGACGAAA-TA-C-CAT--------TTCT-----GC-----CCG----------G-------GGC-------A----------A--T-GGATTTT---A-TGGTC-CG---GGCAAT--GTGA-T--C--TT-CGA---------------------CG--CGTC-C--AA---GACAA---TG-A---AAA--TCC------AGTC-TGTCT-----GAAGAAAGATA-----------TGATAAAA-C--------GCTGTGCAACAGTCAAG---AGCTGAA-ATC------AAACAG--T-ATAT--CA-----TGGTGAACAA-------TTATCTTTGGTTAT-GTAAATCAGTCAAGCTATGTGAACCCATT-Taa
gi|14 : gggtggATG-TCACGAAAGTAAGTTAG------------TAGTTTTTTCA-GTTTATTTCGCA-------------TTTGTTAA---------AGGTAGGGCAAG-TAAAAATGACA-GACAGGGCAAGAGAATTTTGATC-ATGCACTTGCCACG-GAGCGAGTGCTCTATATAATCTATTTG-TCAGCCtgaa
gi|15 : tatgGGGGCTGAC-AAA-TC-C-TATAACACTGCT--------AC-----CTC----------G-------GGC-------A----------A-GT-AAATTTC---T-GGG-T-AG---TACTG---GTAAAT--T--TT-TGA--TAA-GCAG----T--TGTCCA--TGGG-C--AA---G-TAAT-TTA-G---GAAG-Tttcc
gi|16 : caGGGGCTGAC-AAAATC-CTCAT--------T--------TC-----TCG----------G-------AAC-------A----------CCGT-AG--------C-TGG--------GGCAA---GTGAAT--TATTT-TAA--TAA-CCAC----TCTTGCCCGTACGGG-C--AA---G-TAACTTTGTA---AAAA-TCC------AATTAAGT-------AAAagctccaagtaaga
gi|17 : atcaGGCTGAC-AAA-TC-C-CAT--------TGCCCGC--GC-----CCG----------G-------GGC------------------A-TT-GCATTTT---CATGG-C-AG---GGCAAT--GTGAAT--T--TT-TCA--TAA-TCc
gi|18 : GGGCTGAC-AAA-TC-G-TAT--------T--------GC-----CTG----------A-------TGCTCAAGGAA----------A-GT-AAATTTT---A-GGG-T-AG---GACAC---GTTAAT--T--TT-TGA--TTA-TCACTTAAT--TGTTTA--TGGG-C--AA---G--AAC-TTcgaccttactgccaatatgagttaagtcatgttattgagaa
gi|19 : a-TTG-A---AAAA-TCC------AGTA-ATT-------GAAAAA-------------------TAGAA-C------ATATTGC---ACATTC--G---GACTGAA---C------A---------------TA-----TCGT--ATGA-G-----TTATCTTCCATTAT-GTAAACTAGTC-AGCTATGTGAACCtgat
gi|2 : --T-ATAT--CA-----TTGT--ATGA-A-----TTATCTTCCGTTAC-GTAAACTAGTC-ATCTATGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTT-ACT-AT--ATT---T----A-ATTT--TA-AGAGCAGGTTGAACATTTATTGGTATATCAAA
gi|2 : aCAAAGTGAATGCAAAATTTTTTAAGTTGAAGAACTGTTAAAATC-TCAAGAAATTAAGTTAAG-----TTCACGAGAGTTGTAAAGTAGGGCAGCAAAAATAAAAGAATG-TTACAAA------CTA-------------CA-GGTA--CA-TTTTTT-TTGTA-----------AATTTGTGAA---------AGGTAAAGCAAG-TAAAG-TCAAA-GGTAGGGCAAGTGAATTTTGGTC-ATGCAC-CGTC-TGTGGGCAAGTGCTCT-GTAGATCTATTTG-TCAGCgcgcaaatataaccgaccattgaatcaacagctgacaacaaataagtacctgtgtgatgcctagtctgaattttctcacttttgtatttactgtcgggagtgtaagattttcaccaacccaaatacttaacaaaagaaatttttgtttctaaaacacacaaagtgaatgcaaaattttttaagttgaagaactgttaaaatctcaagaaattaagttaagttcacgagagttgtaaagtagggcagcaaaaataaaagaatgttacaaactacaggtacattttttttgtaaatttgtgaaaggtaaagcaagtaaagtcaaaggtagggcaagtgaattttggtcatgcaccgtctgtgggcaagtgctctgtagatctatttgtcagctagccccgga
gi|20 : atatatcattgtatgaattatcttccgttacgtaaactagtcatctatgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaagagcaggttgaacatttattggtatatcaaagcgcaaatataaccgaccattgaatcaacagctgacaacaaataagtacctgtgtgatgcctagtctgaattttctcacttttgtatttactgtcgggagtgtaagattttcaccaacccaaatacttaacaaaagaaatttttgtttctaaaacaca--T--TT-TAAAATAA-CCAC----T--TGTTCA--CAGGTC--AA---A-TGAC-TTG-A---AAAA-TCC------AGTC-A-T-------GAAAAAC--TG-----------GAATAAAA-C------CAGTTGT---ACAATA--G---GTCTGAA-ATC------AAA-tagccccgga
gi|21 : aGGGCAAG-TAAAA-TCACA-GGCAGGGCAAGTGAATTTTAGTC-CTGCACTTGCC-CGTGGGCAAGTGCTCT-AAAAATCTATTTG-TCAGCC
gi|22 : gGGGGCTGAC-AAA-TC-T-CAT--------T--------GT-----CCGATGCCCA---G-------GGC-------A----------A-AT-GGATTTT---C-TGG-T-CG---GGCGT---GTGAAT--A--TT-TAA--TAT-CCAT----T--
gi|24 : --T-ATAT--CA-----TCGT--ACAA-G-----TTATCTTC
gi|3 : a-ATAT--CA-----TTGT--ATGA-A-----ATATCTTCCGTTAC-GTAAACTAGT--ATTCCTGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTT-ACT-AT--ATT---------TAATT--T-TAAGGCAGGTTGAACATTTATTGGTATATCAAAaagtcttcaagt
gi|3 : CAAAGTGTATGCAAAATTTTTTGAGTTGAAGAACTGTTAAAATC-TCAAGAAATTAAGTGAAGC----T-CACGAGAGTTGTAAAGTAGGGCAGCAAAAATAAAAGAATGTTCATGAA------CTA-------------C--TTTA--CA-TTTTTT-TTGTA-----------AATTTCTGAA---------AGGTAAAGCAAG-TAAAG-TCAAAGGGTAGGGCAAGTGAATTTTGGTC-ATGCAC-TGTC-CGTGGGCAAGTGCTCT-GTAGATCTATTTG-TCAGCgcgcaaatataaaccgccattgaatcaacagctgaacacaaataagtacctgtgtgatgcctagtctgaatttctcacttttgtatttactgtcgggagtgtaagtttttcaccaacccaatacttaacgaaagaaatttttgtttcttaaacacacaaagtgtatgcaaaattttttgagttgaagaactgttaaaatctcaagaaattaagtgaagctcacgagagttgtaaagtagggcagcaaaaataaaagaatgttcatgaactactttacattttttttgtaaatttctgaaaggtaaagcaagtaaagtcaaagggtagggcaagtgaattttggtcatgcactgtccgtgggcaagtgctctgtagatctatttgtcagctagccccggat
gi|4 : atatcattgtatgaaatatcttccgttacgtaaactagtattcctgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaaggcaggttgaacatttattggtatatcaaagcgcaaatataaaccgccattgaatcaacagctgaacacaaataagtacctgtgtgatgcctagtctgaatttctcacttttgtatttactgtcgggagtgtaagtttttcaccaacccaatacttaacgaaagaaatttttgtttcttaaacacaGGTGCTGAC-AAT-TTTC-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GACAA---GGAAAT--A--TT-TAA--TAA-CCAC----T--TGCCCG--TGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AATT-AGT-------GAAAAAA--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------GGA-AG--T-ATAT--CA-----TCGT--ACGA-G-----TTGTCTTTCGCTAT-GTAAACTAGTC-AGCTGTATGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTT-ACC-AG--CTTGAATG---ATAATT--TATAGATCAGGTTCAACATTTATTGGTAAA-CAAATTGGCGGCAGA---AGGCTGA---CA---TGA-------AAG-------------CA---------CAAA------TAACTTGAAGAACT--TTAA-TC-TCGTGAGACTA-GTTAAGC----TTCACGG--GTTCCAAAGTTGGGCAGCAATAATATATGAATA-TTACAAA------CTA-------------CA-TTTATTTG-TTTTGTGTCATA-----------ATTTTGTTGA---------AGGTAGGGCAAG-TAAAA-TCACA-GGAAGGGCAAGTGAATTTTGGTC-ATGCACATACC-CGTGGGCAAGTGCTCT-TAAAATCTATTTG-TCAATCCtagccccggat
gi|5 : GGGGC-GAC-AAA-TC-C-CAT--------T--------GCGACGCCCG----------G-------GG--------A----------T-GT-GAATTTTT--C-TGG-C-AG---GGCAA---GTGAAT--T--TA-ACA--TAA-CCAC----T--TGCCCG--TGGG-C--AA---G-TAAC-T-G-A---AAAA-TCC------AGTC-AGT---------AAAAT--TA-----------GAAAAAAAAC------ATGTCGT---ACATT-------GACTGA----T------AGA-GG--TCAT-T--CG-----TC----ACGAAG-----TTGTCTTTCGTTAT-GTACTATAGTC-AGCTATGCGA-CCAGTT-TAATCTGT--CA-TTA-GAG-----A---------------------------ATTG--T----ATAG--------GAGCAGGTTCAACTTTTATTGGTAGA-CAAATTGG-AGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAGACACT--TAAA-TCTTCATGAAATAG-GTTGAG------TTAT-GGAGTTTTAAAGTA-GGCAGCAAAAGT-AATGAATG-TCACG-A------CAG-------------CA-ATTTTTAG-TTTTATATCGTA-----------ATTTTGTTAA---------AAGTA-GGCAAGTTAAAA-TTACA-GGCAGGGCAA-TGAATTTT-GTCAATGCACTTG-C-CGTGGGCAAGTG-TCT-AAAAATCTATTTGATCAGCCCct
gi|6 : aGGGGC-GAC-AAA-TC-C-CAT--------T--------GCGACGCCCG----------G-------GG--------A----------T-GT-GAATTTTT--C-TGG-C-AG---GGCAA---GTGAAT--T--TA-ACA--TAA-CCAC----T--TGCCCG--TGGG-C--AA---G-TAAC-T-G-A---AAAA-TCC------AGTC-AGT---------AAAAT--TA-----------GAAAAAAAAC------ATGTCGT---ACATT-------GACTGA----T------AGA-GG--TCAT-T--CG-----TC----ACGAAG-----TTGTCTTTCGTTAT-GTACTATAGTC-AGCTATGCGA-CCAGTT-TAATCTGT--CA-TTA-GAG-----A---------------------------ATTG--T----ATAG--------GAGCAGGTTCAACTTTTATTGGTAGA-CAAATTGG-AGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAGACACT--TAAA-TCTTCATGAAATAG-GTTGAG------TTAT-GGAGTTTTAAAGTA-GGCAGCAAAAGT-AATGAATG-TCACG-A------CAG-------------CA-ATTTTTAG-TTTTATATCGTA-----------ATTTTGTTAA---------AAGTA-GGCAAGTTAAAA-TTACA-GGCAGGGCAA-TGAATTTT-GTCAATGCACTTG-C-CGTGGGCAAGTG-TCT-AAAAATCTATTTGATCAGCCC
gi|7 : aGGGCTGAT-AAA-TC-C-CAT--------T--------GC-----CTG----------ACGCCCATGGC-------A----------T-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCA--TGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT---------AAAAA--TA-----------GAATAAAG-C------AAGTCGT---ACATTC--G---GACTGAA-ATC------GAA-GG--T-ATAT--CA-----TCGT--ACTA-G-----TTGTCTTTCGTTAT-GTACACTAGTC-AGCTATGTGAACCAA--------TG-------TACGAG-----A---TTT--------CCTT-ACCAAT--A----------ATAATTTATATAGAGCAGGTTCAACTTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCCGA---CT---TTA-------AAG-------------------------AAA------TA----------------AA-TC-TCATGAAACTA-GTT-AGCCGAGTTCACAGGAGTTCTAAA
gi|8 : GGGGCTGAC-AAA-TC-C-CAT--------CTTAACTTCGCTT---CCGAACCAGCACCG-------GGT-------AGC--------A-GTAGGATTCTGGTC-TGG-CTAGTATAGCAAAGGGTTAAT--T--TT-TAA--TAA-TCAC----T--TGCCCG--CGG--C--AATGAG-TAAC-TTG-AGATAAAA-TCCGCATCAAGTT-AATCGATAACAAAAAAG--CAAGTTGCACAATGAATAAAA-CGGTTCCATGTCGA---ACATTC--GTTAGAACAAATATCGACCGGAAA-AG--T--TAT--CAATTACTCG---ACGA-GCAGAATTATCTTC-GTTATTGTAAACTATTC-AGCTATGTGAACCAGTT-TAAT-TCTTTTGCTTACGAG-----A---TTT--------Taacagtgtattattggactctggaattattttaattgttggaatctgttaaaattttgtttataggc
gi|9 : GGGCTGAA-AAA-TC-C-CAT--------T--------GC-----CCG----------ACACTCTTAGT-------G----------A-GT-GGATTTT---C-TGG-T-AG---AGCAA---GTGAATATT--TT-TAAA-TAA-CTAC----T--TGCCTG--CAGG-C--AA---G-TGAC-TTA-A---AAAAATCT------AGTC-ATT-------GAAAAA---TA-----------GAATAAAA-C------CTGCTGT---ACAGTT--G---GACTGAA-ATC------AAA-AG--T-ATATATCA-----TTGT--ATGA-A-----TTATCTTCCGTTAC-GTAAACTAGTC-ATCTATGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTT-ACT-AT--ATT---T----A-ATTT--TA-AGAGCAGGTTGAACATTTATTGGTA
blockSeqs : G A G T CTTAACTTCGCTTCCGAACCAGCACCGGGTAGCA A GGT A TC TAT AGG AT AT A AA G TTAA CT TA T AA TGA A T T GAT A GCATCA G CGATAACAA GCAAGTTGCACAAT A GGTTCCA GCA CGTTA T GACCGG T C . C AT ATTAC GTGA GCAGAA C TT C A C G C TCTTTATTCAATACAAATCTTACTATATTTAATTTTA G A T C . CA AAGATTTTTCAAAGTG ATTTTT A GT A T A A CCGAGTT G G G A A T A AGTAAGTTAG GT TTTCA A T . A T . G T A G G G A T C A C G A
blockSeqs : . . G . AACACTGCTACCTCGGGCAA . T . CT . T . . A A C . . . . AA . . . . . . . G CTGA AGATA A A . CAAG . . T . . C . . GT AG G C T . C G . TCTTTATTCAATACAAATCTTACTATATTTAATTTTA C C T C . CT AAGATTTTTCAAAGTG ATTTTT A GT A T A A CTT G G G A A . A CTA G ATTTG T G . A G . A T . . G G A T T . C A A
blockSeqs : . . T . TGCCTGATGCTCAAGGAAA . T . C . T . . . . T . . . . . . . . . . . . A AA ATA . A . CG . . A . . . . . GT AG C T C . . G . TCTTTATTCAATACAAATCTTACTATATTTAATTTT C C . . . CT AAGCA . A . . . . A TT G C G A T . A CTA T TTTAG T A . T G . G . . . G A . A C . C G .
blockSeqs : . . . . TGTCCGATGCCCAGGGCAA . . . C . . . . . . T . . . . . . . . . . . . . GA ATA . A . AG . . A . . . . . GT A C T C . . G . TCTTTATTCAATACAAATCTTACTATATTTAATTTT G A . . . CT AAG . C . . . . G CT A T . . T . A CTA T TTTAG G A . T T . A . . . G G . T T . C T .
blockSeqs : . . . . TGCCTGACGCCCATGGCAT . . . T . . . . . . C . . . . . . . . . . . . . GA CTG . C . CG . . G . . . . . GT G C C C . . G . ATTTTCTTACCAGCTTGAATGATAATTTAT G A . . C . . . . G T . T . . T . . CAG A ACA A . . T T . G . . . G G . T C . . A .
blockSeqs : . . . . TGCCCGACACTCTTAGTGA . . . C . . . . . . C . . . . . . . . . . . . . GA ATA . A . CG . . G . . . . . GT G C C C . . G . ATTTCCTTACCAATAATAATTTATAT C A . . . . . . . . T . C . . CAG A ACA A . . . T . . . . . . . . . . . . A .
blockSeqs : . . . . TGCCCGACGCCGGGCTT . . . T . . . . . . C . . . . . . . . . . . . . GA TTA . A . TG . . G . . . . . GT G C T A . . T . CTTTCTTACCATTATAATTCATAT C T . . . . . . . . . .
blockSeqs : . . . . TGCCCGACGCCGGGCTT . . . T . . . . . . C . . . . . . . . . . . . . . TTA . A . C . . A . . . . . GT A C T A . . G . CTTTCTTACCATTATAATTCATAT C T
blockSeqs : . . . . TGCCCGCGCCCGGGGCA . . . C . . . . . . C . . . . . . . . . . . . . . ATA . A . C . . A . . . . . GT G C T C . . . . AATTGTATAG C T
blockSeqs : . . . . TGCGACGCCCGGGGAT . . . C . . . . . . C . . . . . . . . . . . . . . TA . C . . . . A . . . . . T A C T C . . . . AATTGTATAG G A
blockSeqs : . . . . TGCGACGCCCGGGGAT . . . C . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . T G . C C . . . .
blockSeqs : . . . . TTCTGCCCGGGGCAA . . . C . . . . . . C . . . . . . . . . . . . . . . . . . G G . . . . .
blockSeqs : . . . . TTCTCGGAACACC . . . T . . . . . . . . . . . . . . . . . . . . . . A . . . .
blockSeqs : . . . . TGCCCGGGGCAA . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ** ** C* ATA************* ** T* *** CT****** AAGCAG**************************** CTA******************* TTTNG* *********** ********* A*
originalCons : GGGGCTGAC-AAA-TC-C-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCG--CGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT-------GAAAAAA--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------AAA-GG--T-ATAT--CA-----TCGT--ACGA-G-----TTATCTTCCGTTAC-GTAAACTAGTC-AGCTATGTGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTT-ACC-AT--ATT---T----ATAATT--TATAGAGCAGGTTCAACNTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCTGA---CT---TTA-------AAGATT-------TTTCAAAGTG----CAAA------TAACTTGAAGAACT--TAAA-TC-TCATGAAACTA-GTTAAGC----TTCACGGGAGTTNTAAAGTAGGGCAGCAAAAATAAANGAATG-TCACGAA------CTA-------------CA-TTTNTTCG-TTTTNTGTCGTA-----------ATTTTGTTAA---------AGGTAGGGCAAG-TAAAA-TCACA-GGCAGGGCAAGTGAATTTTGGTC-ATGCACTTGCC-CGTGGGCAAGTGCTCT-NAAAATCTATTTG-TCAGCCC
finalCons : GGGGCTGAC-AAA-TC-C-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAAC-CAC----T--TGCCCG--CGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT-------GAAAAAATA-------------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------AAA-GG--T-ATAT--CA-----TCGT--ACGA-G-----TTATCTTCCGTTAT-GTAAACTAGTC-AGCTATGTGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTT-ACC-AT--ATT---T----ATAATT--TATAGAGCAGGTTCAACNTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCTGACT------TTAAAGCAG----------------------------CAAA------TAACTTGAAGAACT--TAAA-TC-TCATGAAACTA-GTTAAGC----TTCACGGGAGTTNTAAAGTAGGGCAGCAAAAATAAANGAATG-TCACGAACTA-------------------CA-TTTTTTNG-TTTTNTGTCGTA-----------ATTTTGTTAA---------AGGTAGGGCAAG-TAAAA-TCACA-GGCAGGGCAAGTGAATTTTGGTC-ATGCACTTGCC-CGTGGGCAAGTGCTCTA-AAAATCTATTTG-TCAGCCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AACCAGTTTACTCTCTGTCCTTACAAGTCTTTATTCAATACAAATCTT
Alignments
lowQualScore : 1111111111111
lowQualScore : 66666666666666666666666666666666666666666666666666666666666666666666 111 111 222222222 1111111111111111 1111111 1111111 1111111 9999999999999999999999999999999999999999999999999999999 1 1 111 0000000000000 11 1 1 1 2222222 1 55555555555555555555555555555 111 22222222222 222222222 1 1 1 1
lowQualScore : 2 2 8 2 22222222222222222222222222222222222222222222222222222222222222222222 2 000 2 444 444 000 66 33 5 88 44 5555 33 33 2 77 555 2 5 2 555 2 888888 9 0 666666666 9999999999999999 6 0000000 0 555 6666666 3 999999 3 3 44 5 33 66666 4444 6666666 2 2 3 2 0 0 6 2 3 4444444444444444444444444444444444444444444444444444444 1 1 1 0 444 8 8888888888888 0 1 55 1 1 0 1 2 3333333 1 1 9 88 5 33333333333333333333333333333 1 000 1 8 77777777777 1 1 222222222 6 0 5 5 2 0 0 6 6 5 4 5 1
lowQualScore : . . . . .................................................................... . ... . ... ... ... .. .. . .. .. .... .. .. . .. ... . . . ... . ...... . . ......... ................ . ....... . ... ....... . ...... . . .. . .. ..... .... ....... . . . . . . . . . ....................................................... . . . . ... . ............. . . .. . . . . . ....... . . . .. . ............................. . ... . . ........... . . ......... . . . . . . . . . . . . .
lowQualScore : 7 7 0 7 77777777777777777777777777777777777777777777777777777777777777777777 7 000 7 000 777 000 99 44 0 44 99 7777 77 99 9 99 000 9 3 9 000 9 888888 2 8 222222222 7777777777777777 7 7777777 8 888 0000000 3 666666 2 3 22 3 77 77777 5555 3333333 5 9 6 9 6 2 2 5 3 1111111111111111111111111111111111111111111111111111111 4 0 4 0 000 0 2222222222222 8 3 77 4 4 6 4 3 9999999 4 0 3 33 7 00000000000000000000000000000 0 000 0 9 11111111111 9 6 999999999 5 0 0 0 5 8 0 5 5 0 3 7 4
consensus : GGGGCTGAC-AAA-TC-C-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCG--CGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT-------GAAAAAA--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------AAA-GG--T-ATAT--CA-----TCGT--ACGA-G-----TTATCTTCCGTTAC-GTAAACTAGTC-AGCTATGTGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTT-ACC-AT--ATT---T----ATAATT--TATAGAGCAGGTTCAACNTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCTGAC-TTTAAAGATTTTTCAAAGTGCAAATAACTTGAAGAACT--TAAA-TCT-CATGAAACTA-GTTAAGC----TTCACGGGAGTTNTAAAGTAGGGCAGCAAAAATAAANGAATG-TCACGAA------CTA-------------CA-TT-TTTTNGT---TTTNTNTCGTA-----------ATTTTGTTAA---------AGGTAGGGCAAG-T-AAAATCACA-GGCAGGGCAAGTGAATTTTGGTC-ATGCACTTGCC-CGTGGGCAAGTGCTCTA-AAAATCTATTTG-TCAGCCC
Reference ( family-507 ) : GGGGCTGAC-AAA-TC-C-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCG--CGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT-------GAAAAAA--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------AAA-GG--T-ATAT--CA-----TCGT--ACGA-G-----TTATCTTCCGTTAT-GTAAACTAGTC-AGCTATGTGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTT-ACC-AT--ATT---T----ATAATT--TATAGAGCAGGTTCAACNTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCTGAC-TTTAAAG------CA----GCAAATAACTTGAAGAACT--TAAA-TCT-CATGAAACTA-GTTAAGC----TTCACGGGAGTTNTAAAGTAGGGCAGCAAAAATAAANGAATG-TCACGAA------CTA-------------CA-TT-TTTTNGT---TTTNTGTCGTA-----------ATTTTGTTAA---------AGGTAGGGCAAG-T-AAAATCACA-GGCAGGGCAAGTGAATTTTGGTC-ATGCACTTGCC-CGTGGGCAAGTGCTCTA-AAAATCTATTTG-TCAGCCC
gi|1 : -ATAT--TA-----TCGT--ACAA-G-----TTATCTTC----A---------AGTC-AACTATGTGAACAAGTT-TAATCTGTGTCG-TTATATG-----AATCTTT--------TGTTCAAT-ATGGATT---TACCAATAATT--TAAAGTGCAGGTTGAACACTTATTGGTAGA-CAAATTGGCAACAGATTCAGGCTGATGTCTAAA
gi|1 : GAACA--TAAA-TTT-CATCAAACCA-GTTATGC----T-CATGGGAATTGTAAAATATGACAG-AAAAATAAAAGAATG-GCGCAAA------CTAAACTAGTTTGTGCCA-TTCTTTTATT---TTTCTGTCATATTTTAACAATTATTTCATAAAACTTTTGGTAGGTAGGGAAAG-T-AATATCACA--GTAGGGCAAGTGAATTTT-ATC-ATGCA-TTGCC-Cttaaatggagaaaattttagcaatttcaaagtgcaaataaccaaccattgaaatgaaagctgacaacaaatattaacgatgccaagcgtagtgtgacagttttggaacctttgtatttactggtgggagtgtgaaattatcaccaacccttgaatttaaccaaataaattttattactgaaaacataaactggatgcaatttttttttttagttgaacataaatttcatcaaaccagttatgctcatgggaattgtaaaatatgacagaaaaataaaagaatggcgcaaactaaactagtttgtgccattcttttatttttctgtcatattttaacaattatttcataaaacttttggtaggtagggaaagtaatatcacagtagggcaagtgaattttatcatgcattgccc
gi|10 : atattatcgtacaagttatcttcaagtcaactatgtgaacaagtttaatctgtgtcgttatatgaatcttttgttcaatatggatttaccaataatttaaagtgcaggttgaacacttattggtagacaaattggcaacagattcaggctgatgtctaaattaaatggagaaaattttagcaatttcaaagtgcaaataaccaaccattgaaatgaaagctgacaacaaatattaacgatgccaagcgtagtgtgacagttttggaacctttgtatttactggtgggagtgtgaaattatcaccaacccttgaatttaaccaaataaattttattactgaaaacataaactggatgcaatttttttttttagttGGGCTGAA-AAA-TC-C-CAT--------T--------GC-----C--------------------GAC-------ACTCCTTAGTGA-GT-GGATTTT---C-TG--T-GG---AGCAA---GTGAATATT--TT-TAAA-TAAACTAC----T--TGCCTG--CAGG-C--AA---G-TGACGTTA-A---AAAA-ATC------TGTC-ATT-------GAAAAA---TA-----------GAATAAAA-C------CTGCTGT---ACAGTT--G---GACTGAA-ATC------AAA-AGTAT-ATAT--CA-----TTGT--ATGA-A-----ATATCTTCCGTTAC-GTAAACTAGT--ATTCCTGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTT-ACT-AT--ATT---------TAATT--T-TAAGGCAGGTTGAACATTTATTGGTA
gi|11 : GGGGCTGAC-AAA-TCGC-CAT--------T--------GC-----CCGACGCC-----G-------GGC-------T----------T-GT-GAATTTT---T-GGG-C-AG---G-CAA---GTGAAT--T--TTATAA--TAA--CAC----T--TGCCTG--TGGG-CAAAA---G-TAAC-TTT-G---AAAA-TCC------AGTCGAGT---------AAAAA--TA-----------GAATAAAA-C------AT---GT---ACATTC------GACTGAA-ATT------ATA-GG--T-ATAT--CA-----TC-T--ACGA----------------GTTAT-GTAAA-TAGTC-AAGAATGTTAACCAGTTCTAATC--TGTCG-TTACGTG---------CTT--------TCTT-ACC-A-----T---T----ATAATTCATATAGAGCA-GTTCAACCTTTATTAG
gi|12 : aGGGGCTGAC-AAA-TCGC-CAT--------T--------GC-----CCGACGCC-----G-------GGC-------T----------T-GT-GAATTTT---T-GGG-C-AG---G-CAA---GTGAAT--T--TTATAA--TAA--CAC----T--TGCCTG--TGGG-CAAAA---G-TAAC-TTT-G---AAAA-TCC------AGTCGAGT---------AAAAA--TA-----------GAATAAAA-C------AT---GT---ACATTC------GACTGAA-ATT------ATA-GG--T-ATAT--CA-----TC-T--ACGA----------------GTTAT-GTAAA-TAGTC-AAGAATGTTAACCAGTTCTAATC--TGTCG-TTACGTG---------CTT--------TCTT-ACC-A-----T---T----ATAATTCATATAGAGCA-GTTCAACCTTTATTAGaa
gi|13 : aTGACGAAA-TA-C-CAT--------TTCT-----GC-----CCG----------G-------GGC-------A----------A--T-GGATTTT---A-TGGTC-CG---GGCAAT--GTGA-T--C--TT-CGA---------------------CG--CGTC-C--AA---GACAA---TG-A---AAA--TCC------AGTC-TGTCT-----GAAGAAAGATA-----------TGATAAAA-C--------GCTGTGCAACAGTCAAG---AGCTGAA-ATC------AAACAG--T-ATAT--CA-----TGGTGAACAA-------TTATCTTTGGTTAT-GTAAATCAGTCAAGCTATGTGAACCCATT-Taa
gi|14 : gggtggATG-TCACGAAAGTAAGTTAG------------TAGTT-TTTTCAG---TTTATTTCGCA-------------TTTGTTAA---------AGGTAGGGCAAG-TAAAAATGACA-GACAGGGCAAGAGAATTTTGATC-ATGCACTTGCCACG-GAGCGAGTGCTCTATATAATCTATTTG-TCAGCCtgaa
gi|15 : tatgGGGGCTGAC-AAA-TC-C-TATAACACTGCT--------AC-----CTC----------G-------GGC-------A----------A-GT-AAATTTC---T-GGG-T-AG---TACTG---GTAAAT--T--TT-TGA--TAA-GCAG----T--TGTCCA--TGGG-C--AA---G-TAAT-TTA-G---GAAG-Tttcc
gi|16 : caGGGGCTGAC-AAAATC-CTCAT--------T--------TC-----TCG----------G-------AAC-------A----------CCGT-AG--------C-TGG--------GGCAA---GTGAAT--TATTT-TAA--TAA-CCAC----TCTTGCCCGTACGGG-C--AA---G-TAACTTTGTA---AAAA-TCC------AATTAAGT-------AAAagctccaagtaaga
gi|17 : atcaGGCTGAC-AAA-TC-C-CAT--------TGCCCGC--GC-----CCG----------G-------GGC------------------A-TT-GCATTTT---CATGG-C-AG---GGCAAT--GTGAAT--T--TT-TCA--TAA-TCc
gi|18 : GGGCTGAC-AAA-TC-G-TAT--------T--------GC-----CTG----------A-------TGCTCAAGGAA----------A-GT-AAATTTT---A-GGG-T-AG---GACAC---GTTAAT--T--TT-TGA--TTA-TCACTTAAT--TGTTTA--TGGG-C--AA---G--AAC-TTcgaccttactgccaatatgagttaagtcatgttattgagaa
gi|19 : a-TTG-A---AAAA-TCC------AGTA-ATT-------GAAAAA-------------------TAGAA-C------ATATTGC---ACATTC--G---GACTGAA---C------A---------------TA-----TCGT--ATGA-G-----TTATCTTCCATTAT-GTAAACTAGTC-AGCTATGTGAACCtgat
gi|2 : --T-ATAT--CA-----TTGT--ATGA-A-----TTATCTTCCGTTAC-GTAAACTAGTC-ATCTATGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTT-ACT-AT--ATT---T----A-ATTT--TA-AGAGCAGGTTGAACATTTATTGGTATATCAAA
gi|2 : aTAAGTTGAAGAACTGTTAAAATCT-CAAGAAATTAAGTTAAG-----TTCACGAGAGTTGTAAAGTAGGGCAGCAAAAATAAAAGAATG-TTACAAA------CTA-------------CA--------GGTACATTTTTTTTGTA-----------AATTTGTGAA---------AGGTAAAGCAAG-T-AAAGTCAAA-GGTAGGGCAAGTGAATTTTGGTC-ATGCAC-CGTC-TGTGGGCAAGTGCTCTG-TAGATCTATTTG-TCAGCgcgcaaatataaccgaccattgaatcaacagctgacaacaaataagtacctgtgtgatgcctagtctgaattttctcacttttgtatttactgtcgggagtgtaagattttcaccaacccaaatacttaacaaaagaaatttttgtttctaaaacacacaaagtgaatgcaaaattttttaagttgaagaactgttaaaatctcaagaaattaagttaagttcacgagagttgtaaagtagggcagcaaaaataaaagaatgttacaaactacaggtacattttttttgtaaatttgtgaaaggtaaagcaagtaaagtcaaaggtagggcaagtgaattttggtcatgcaccgtctgtgggcaagtgctctgtagatctatttgtcagctagccccgga
gi|20 : atatatcattgtatgaattatcttccgttacgtaaactagtcatctatgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaagagcaggttgaacatttattggtatatcaaagcgcaaatataaccgaccattgaatcaacagctgacaacaaataagtacctgtgtgatgcctagtctgaattttctcacttttgtatttactgtcgggagtgtaagattttcaccaacccaaatacttaacaaaagaaatttttgtttctaaaacacacaaagtgaatgcaaaattttt--T--TT-TAAAATAA-CCAC----T--TGTTCA--CAGGTC--AA---A-TGAC-TTG-A---AAAA-TCC------AGTC-A-T-------GAAAAAC--TG-----------GAATAAAA-C------CAGTTGT---ACAATA--G---GTCTGAA-ATC------AAA-tagccccgga
gi|21 : aGGGCAAG-T-AAAATCACA-GGCAGGGCAAGTGAATTTTAGTC-CTGCACTTGCC-CGTGGGCAAGTGCTCTA-AAAATCTATTTG-TCAGCC
gi|22 : gGGGGCTGAC-AAA-TC-T-CAT--------T--------GT-----CCGATGCCCA---G-------GGC-------A----------A-AT-GGATTTT---C-TGG-T-CG---GGCGT---GTGAAT--A--TT-TAA--TAT-CCAT----T--
gi|24 : --T-ATAT--CA-----TCGT--ACAA-G-----TTATCTTC
gi|3 : a-ATAT--CA-----TTGT--ATGA-A-----ATATCTTCCGTTAC-GTAAACTAGT--ATTCCTGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTT-ACT-AT--ATT---------TAATT--T-TAAGGCAGGTTGAACATTTATTGGTATATCAAAaagtcttcaagt
gi|3 : TTGAAGAACTGTTAAAATCT-CAAGAAATTAAGTGAAGC----T-CACGAGAGTTGTAAAGTAGGGCAGCAAAAATAAAAGAATGTTCATGAA------CTA-------------C-----TTTACAT---TTTTT-TTGTA-----------AATTTCTGAA---------AGGTAAAGCAAG-T-AAAGTCAAAGGGTAGGGCAAGTGAATTTTGGTC-ATGCAC-TGTC-CGTGGGCAAGTGCTCTG-TAGATCTATTTG-TCAGCgcgcaaatataaaccgccattgaatcaacagctgaacacaaataagtacctgtgtgatgcctagtctgaatttctcacttttgtatttactgtcgggagtgtaagtttttcaccaacccaatacttaacgaaagaaatttttgtttcttaaacacacaaagtgtatgcaaaattttttgagttgaagaactgttaaaatctcaagaaattaagtgaagctcacgagagttgtaaagtagggcagcaaaaataaaagaatgttcatgaactactttacattttttttgtaaatttctgaaaggtaaagcaagtaaagtcaaagggtagggcaagtgaattttggtcatgcactgtccgtgggcaagtgctctgtagatctatttgtcagctagccccggat
gi|4 : atatcattgtatgaaatatcttccgttacgtaaactagtattcctgtgaaccactttaatctgtgtcgctacgagtctttattcaatacaaatcttactatatttaattttaaggcaggttgaacatttattggtatatcaaagcgcaaatataaaccgccattgaatcaacagctgaacacaaataagtacctgtgtgatgcctagtctgaatttctcacttttgtatttactgtcgggagtgtaagtttttcaccaacccaatacttaacgaaagaaatttttgtttcttaaacacacaaagtgtatgcaaaattttttgagGGTGCTGAC-AAT-TTTC-CAT--------T--------GC-----CCG----------G-------GGC-------A----------A-GT-GGATTTT---C-TGG-C-AG---GACAA---GGAAAT--A--TT-TAA--TAA-CCAC----T--TGCCCG--TGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AATT-AGT-------GAAAAAA--TA-----------GAATAAAA-C------ATGTCGT---ACATTC--G---GACTGAA-ATC------GGA-AG--T-ATAT--CA-----TCGT--ACGA-G-----TTGTCTTTCGCTAT-GTAAACTAGTC-AGCTGTATGAACCAGTT-TAATCTGTGTCG-TTACGAG-----A---TTT--------TCTT-ACC-AG--CTTGAATG---ATAATT--TATAGATCAGGTTCAACATTTATTGGTAAA-CAAATTGGCGGCAGA---AGGCTGAC-ATGAAAG------CA-----CAAATAACTTGAAGAACT--TTAA-TCT-CGTGAGACTA-GTTAAGC----TTCACGG--GTTCCAAAGTTGGGCAGCAATAATATATGAATA-TTACAAA------CTA-------------CA-TT-TATTTGT---TTTGTGTCATA-----------ATTTTGTTGA---------AGGTAGGGCAAG-T-AAAATCACA-GGAAGGGCAAGTGAATTTTGGTC-ATGCACATACC-CGTGGGCAAGTGCTCTT-AAAATCTATTTG-TCAATCCtagccccggat
gi|5 : GGGGC-GAC-AAA-TC-C-CAT--------T--------GCGACGCCCG----------G-------GG--------A----------T-GT-GAATTTTT--C-TGG-C-AG---GGCAA---GTGAAT--T--TA-ACA--TAA-CCAC----T--TGCCCG--TGGG-C--AA---G-TAAC-T-G-A---AAAA-TCC------AGTC-AGT---------AAAAT--TA-----------GAAAAAAAAC------ATGTCGT---ACATT-------GACTGA----T------AGA-GG--TCAT-T--CG-----TC----ACGAAG-----TTGTCTTTCGTTAT-GTACTATAGTC-AGCTATGCGA-CCAGTT-TAATCTGT--CA-TTA-GAG-----A---------------------------ATTG--T----ATAG--------GAGCAGGTTCAACTTTTATTGGTAGA-CAAATTGG-AGCAGA---AGGCTGAC-TTTAAAGATTTTTCAAAGTGCAAATAACTTGAGACACT--TAAA-TCTTCATGAAATAG-GTTGAGT----T--ATGG-AGTTTTAAAGTAGG-CAGCAAAAGTAA-TGAATG-TCACGA-------CAG-------------CA-AT-TTTTAGT---TTTATATCGTA-----------ATTTTGTTAA---------AAGTA-GGCAAGTT-AAAATTACA-GGCAGGGCAA-TGAATTTT-GTCAATGCACTTG-C-CGTGGGCAAGTG-TCTA-AAAATCTATTTGATCAGCCCct
gi|6 : aGGGGC-GAC-AAA-TC-C-CAT--------T--------GCGACGCCCG----------G-------GG--------A----------T-GT-GAATTTTT--C-TGG-C-AG---GGCAA---GTGAAT--T--TA-ACA--TAA-CCAC----T--TGCCCG--TGGG-C--AA---G-TAAC-T-G-A---AAAA-TCC------AGTC-AGT---------AAAAT--TA-----------GAAAAAAAAC------ATGTCGT---ACATT-------GACTGA----T------AGA-GG--TCAT-T--CG-----TC----ACGAAG-----TTGTCTTTCGTTAT-GTACTATAGTC-AGCTATGCGA-CCAGTT-TAATCTGT--CA-TTA-GAG-----A---------------------------ATTG--T----ATAG--------GAGCAGGTTCAACTTTTATTGGTAGA-CAAATTGG-AGCAGA---AGGCTGAC-TTTAAAGATTTTTCAAAGTGCAAATAACTTGAGACACT--TAAA-TCTTCATGAAATAG-GTTGAGT----T--ATGG-AGTTTTAAAGTAGG-CAGCAAAAGTAA-TGAATG-TCACGA-------CAG-------------CA-AT-TTTTAGT---TTTATATCGTA-----------ATTTTGTTAA---------AAGTA-GGCAAGTT-AAAATTACA-GGCAGGGCAA-TGAATTTT-GTCAATGCACTTG-C-CGTGGGCAAGTG-TCTA-AAAATCTATTTGATCAGCCC
gi|7 : aGGGCTGAT-AAA-TC-C-CAT--------T--------GC-----CTG----------ACGCCCATGGC-------A----------T-GT-GGATTTT---C-TGG-C-AG---GGCAA---GTGAAT--T--TT-TAA--TAA-CCAC----T--TGCCCA--TGGG-C--AA---G-TAAC-TTG-A---AAAA-TCC------AGTC-AGT---------AAAAA--TA-----------GAATAAAG-C------AAGTCGT---ACATTC--G---GACTGAA-ATC------GAA-GG--T-ATAT--CA-----TCGT--ACTA-G-----TTGTCTTTCGTTAT-GTACACTAGTC-AGCTATGTGAACCAA--------TG-------TACGAG-----A---TTT--------CCTT-ACCAAT--A----------ATAATTTATATAGAGCAGGTTCAACTTTTATTGGTAGA-CAAATTGGCAGCAGA---AGGCCGAC-TTTAAAG--------------AAA----------------TAAA-TCT-CATGAAACTA-GTT-AGCCGAGTTCACAGGAGTTCTAAA
gi|8 : GGGGCTGAC-AAA-TC-C-CAT--------CTTAACTTCGCTT---CCGAACCAGCACCG-------GGT-------AGC--------A-GTAGGATTCTGGTC-TGG-CTAGTATAGCAAAGGGTTAAT--T--TT-TAA--TAA-TCAC----T--TGCCCG--CGG--C--AATGAG-TAAC-TTG-AGATAAAA-TCCGCATCAAGTT-AATCGATAACAAAAAAG--CAAGTTGCACAATGAATAAAA-CGGTTCCATGTCGA---ACATTC--GTTAGAACAAATATCGACCGGAAA-AG--T--TAT--CAATTACTCG---ACGA-GCAGAATTATCTTC-GTTATTGTAAACTATTC-AGCTATGTGAACCAGTT-TAAT-TCTTTTGCTTACGAG-----A---TTT--------Taacagtgtattattggactctggaattattttaattgttggaatctgttaaaattttgtttataggc
gi|9 : GGGCTGAA-AAA-TC-C-CAT--------T--------GC-----CCG----------ACACTCTTAGT-------G----------A-GT-GGATTTT---C-TGG-T-AG---AGCAA---GTGAATATT--TT-TAAA-TAA-CTAC----T--TGCCTG--CAGG-C--AA---G-TGAC-TTA-A---AAAAATCT------AGTC-ATT-------GAAAAA---TA-----------GAATAAAA-C------CTGCTGT---ACAGTT--G---GACTGAA-ATC------AAA-AG--T-ATATATCA-----TTGT--ATGA-A-----TTATCTTCCGTTAC-GTAAACTAGTC-ATCTATGTGAACCACTT-TAATCTGTGTCG-CTACGAGTCTTTA---TTCAATACAAATCTT-ACT-AT--ATT---T----A-ATTT--TA-AGAGCAGGTTGAACATTTATTGGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AACCAGTTTACTCTCTGTCCTTACAAGTCTTTATTCAATACAAATCTT