lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 6666666666666666666666666666666666666666666666666666666 111111111111111 11111 11 1 33333333333333333333 1111 111 111 111 11 222222222 2222222222222222222222222222222222222222222222222222222222222222222 11 11 22222222222222 222222222222 222 111
lowQualScore : 5 3 9999999999999999999999999999999999999999999999999999999 3 3 3 4 555555555555555 3 3 3 3 3 444 3 3 3 3 3 2 11111 4 4 55 11 88 8888 4 777 4 3 4 4 4 5 44444444444444444444 0000 5 000 999 000 5 11 555555555 8 2 4 4 2222222222222222222222222222222222222222222222222222222222222222222 11 5 5 55 22222222222222 99 77 77 77 6 5 5 5 77 666666666666 5 1 5 1 1 111 5 5 6 777 5 6
lowQualScore : . . ....................................................... . . . . ............... . . . . . ... . . . . . . ..... . . .. .. .. .... . ... . . . . . . .................... .... . ... ... ... . .. ......... . . . . ................................................................... .. . . .. .............. .. .. .. .. . . . . .. ............ . . . . . ... . . . ... . .
lowQualScore : 0 4 4444444444444444444444444444444444444444444444444444444 6 6 6 0 444444444444444 6 6 6 6 6 999 5 6 6 3 6 3 44444 0 0 55 00 11 5555 0 000 0 6 0 4 4 0 44444444444444444444 6666 0 000 333 000 0 99 222222222 2 0 4 4 0000000000000000000000000000000000000000000000000000000000000000000 99 0 7 88 88888888888888 22 99 99 99 0 7 7 7 99 111111111111 7 4 7 9 4 111 7 7 7 777 2 7
consensus : ATGCTTTA-TTTCTGTGTTGCA---T-CATATATATCA--TA---TT-ACA--------T-A------CAA----GT-C-AAA-ATTG-A-T--A-T-TTG-C--AC-AG-AA-ATGT-TCTCG-C-A-CACTTA-CT-TGC-ACACTAAAC-TCACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----T-A---T-TACTTTTACA-TGCT-A-TGTG-AGGAAA-------AAA-A-AAC-CCAC----AGAT-GCA---GCCC--TTAG---ATCTGA--AT-------A-TGTACACTGTACTATATTG-T-AC----------GT-------------ATNA------------------AT--------------A---TAT--AT-AA-AAAC--AAT---GTT-T-TT---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAAC--AG-TTG-AATTTT-TAAC-AGATATATATTTTTCAAC-ATTATAA
Reference ( gi|5 ) : ATGCTTTA-TTTCTGTGCTGCA-AATACATGTATATCA--TA---TT-AGA--------T-A------CAA----GT-C-AAA-ATTG-A-T--A-T-TTG-C--AC-AG-AA-ATGT-TCTCG-C-A-CACTTA-CT-TGC-ACACTAAAC-TCACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----T-A---T-TACTTTTACA-TGCT-A-TGTG-AGGAAAT------AGA-A-AAC-CCAC----AGAT-GCA---GCCG--TTAG---ATCTGA--AT-------A-TGTACACTGTGCTATATTG-T-AC----------GT-------------ATCA------------------AT--------------A---TAT--AT-AA-AAAC--AAT---GCT-T-TT---AAA--TTTC--C--A--ACGCAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAAC--TG-TTG-AATTTT-TAAT-AGATATATATTTTTCAAC-ATTATAA
gi|8 : ATGCTTTA-TTT----GGTGTA-GG---ATATATA-CA--TA---TT-ACA--------T---------------GT-C-AAA-ATTG-A-T--A-------------------AT-----TCG-C-A-CACTTA-CT-TGC-ACACTAAAC-TCACTCATACATA--GA-TTCG-AAAGAGAAAAA--AA-A----T-A---T-TACCTTTGCA-TGCT-A-TGTG-AGAAAAC------AAA-A------CAC----AGAT-GCA---GCCC--TTAG---ATCTGG--AT-------A-T----ACTGTACTATAGTG-T-A
gi|1 : ataATGTTTAA-TTTCTGTGCTGC----TATAT-TACATTA--TG---TTGAAA--------C-ATTGT--CAA----ATTC-AAA-ATTG-A-TG-A-TCTTG-C--AC-AG-AA-ATGT-TATCG-C-A-CGATTATCT-TGC-ACACTAAA--TTGCTCAATC--A--GATTTCG-AAAGAA--AAATGAT-A----T-A---T-AAC-TTTACA-T-CT-ATTGTGCAGAAAAA------CCA-A-AACACCAC----AGA--ACA---GCCG----AGTGCA-CTGACTAT-------ATTGTA-ACGGTATTA-ATAGAT-AA----------GA-------------ATAA------------------AT--------------AAACTAT--ATAAA-AAACA-AAT---GTT-G-TT---AAA---TTC--CAAA--ACACAGG-TATCC-C-TGTTGC--CC----------ATAAGA-AATTGAAATTAATCAACAGTG-TAT-AATTTTGTAACAAGCTATATAATTTT-AAC-ATTATAAtt
gi|6 : taataATGCTTTAATTTCTGTGTTACATAAT-----TA-ACCA--TG---TT-A-A--------T---------------GT-CCAAACATTGCA-TTAA-T-TTG-C--AC-AG-AA-ATGT-TTTCGCC-ATTACCAA-CT-TGC-GCACTAAACTTCCCTCA-AC--A--A----CA-AA------AAA--AC-A----TGG---T-TAACTTTACA-TGCT-A-TGTG-AAGGAAA------AGACA-AAG-GCAA----AGAT-GCATGCGCCC--TTAC---A--------------------TACACTGTGCC------------------------------------------------------------------------------TGT--AT-AA-TAAC--AAT---GCCGT-TT---AAA--TTTC--C--A--ATATAAG-CTTCCACATGTC-C--CCCTCCCCCCCAAAAAAA-AATT-ATA-TTATCAAC--AGCTTG-AATTTT-TA-----ATATATATTATTTAGC-ATTATAtattcatttttaaaaaaattaattcaaaaatccattaggttttgttgcattttttcactacattttgaaacaactaaaatactgttttgaatactaagtaatattagatagtttattatactaaatctttggtaattgaatgatactcgtctccaaaaatataaacataaattctgcgcatttaaaagctataacgtttaagatttgtagtcaatataataatggtgagactaagcatgacattccaaataatgcttacatattccacatgaaaatgtatgtatccagatagttttcacaacttcttataacagagtacaaacttattattatctatacattctctttgattttttttaagataatcatctaacaaggtcctattttctatgtaaaattctggtagctgaacacactggattgaagactggcagatactttaaaacacactttatatatatatattttttaacttacacttac
gi|7 : taaaATGCTTT--TTTCT-TGTTGC------CATATATATCA--AT---TT-ACA--------T-A------CAT----GT-C-AAA-ACTG-A-T--A-------------------AT----CTCG-C-A-CACTTA-CT-TGC-ACACTAAAC-TCACTCA-AC--------------AAGAG--AAA--AT-A----T-A---T-TAC-TTTACA-TGCTAA-TGTG-AGGGA--------AAA-A-AAC-----------AT-GCA---GCCC--TTAG---ATCTGA--ATAAGTTACA-TGGACATTAT--TGCATTG-T-ATAACAGAAGAAAT-------------ATAA------------------AT--------------A---TAT--AT-Attttttcctttttgaaaa
gi|10 : tttaATGCTTTA-TTTCTGTGC--------GCAT-TATATTA--TA---TT-A------------A------CAAAATTGT-C-AAA-ATTG-AGT--A-T-TT--C--ACCAG-AACATGT--CTCG-C-A-C-CTTA-CT-TGC-AT-CTAA-C-TC-CTCATAC--A--GA-TTCG-AAAGAA--AAA--A--A----T-A---T-TACTTTACCATTGCT-A-
gi|4 : taaTGCTTTA-TTTCTGTGTTGCA---TATAT---TATCAC-TA---T--ACA--------T-A------CAG----TT-C-AAA-ACTG-A----A-T-TTG-CCAAC-AG-AA-ATGT-TCTTG-C---CACTTA-C------ATCTTAAAC-TCACTCATAC--A--GA-TTCGAAAAGAG--AAA--AT-A----T-A---T-TAC-TTTACA-TGCT-A-TGTG-AGGGCATCCGGAAAAA-A-AAA-CCAC----AGAT-GCA----CCC--TTAG---ATCTGA--ATA------A-TGTACACTGTACTATATTG-TAAC----------GT-------------ATCA------------------ATAGGAAAGAAATAAAA---TAT--AT-AATAAAC--AAT---GTT-TGTTTAAAAA--TTTCCAC--A--ACACAGCTTTTCCAC-TTTT-C--CC----------A--------------------AAC--AG-TTG-AATTTT-TAAC-AGATACATATTTTCGAAC-A-TATAAaggg
gi|13 : tatTTTA-TTTCTGTGTTGCA-TATACAT-CATATTA--CAAAATT-AAAAACCAAAAT-AAAAACTCAA----AT-C-AAA-AGAG-A-T--A-T-TTGTC--AC-AG-AA-ATGT-TCTCA-C-A-C----A-CT-TGC-ATACTtttattttttaaaaattataatccaattagattgccatttttaataaattattttgatttacataaggatttcccaaactttgaaatcaaaaaacaattcctgctttaaat
gi|17 : TTCA-TTTCTGTGTTG-------CATATCTATCA--TA---TT-ACA------------------AA----AT-C-AAA-A
gi|9 : TTCTGTGTTGCA-------TGTATATCA--TA---TT-ACA--------TTA------CAT----GT-C-AAA-ATTG-A-T--AAT-TTG-C--AC-AG-AG-ATGT-TCTCG-C-A-CACTTA-CT-TGC-ACACTAAAC-TCACTCATAC--A--GA-TTCG-AAAGAG--AAAAGAT-ACTAGT-A---T-TACTTTTACA-TGCT-A-TGTG-AGAAAA-------ACA-A-AAatcaa
gi|3 : ttcTGCATATATATCACCTA---TT-ACA--------T-A------CAA----G--C-AAA-TTTG-A-T--A-T-T-G-C--AC-AGCAA-ATGT-TCTCG-CTC-CACT-A-CTCTGCCACACTAAAC-TCACTCATA---A--GA-TT-G-AAAGAG--AAA--ATGA----T-A---T-TACTTTTACA-TGCT-A--GTG-A--AAA---------A-A-ACC-CCACCACAAGATAGCA---GCCCACTTAG---ATCTGA--AT-------AATGTACACTGTACTATATTG-T-ACGTACAT----GT-------------ATCATAGAAAAGAATACATGATAT--------------A---TAT--AT-AA-AAACATAAT---GTT-T-GT---AAAATTCTC--C--ACGACACAAC-TTTCCAC-TGCT-CTTCC----------A-AAAG-AA-T-AAATTTATCAAC--AG-TTGAAATTCT-AAAC-AGATATATATTTTTCAACAATTAT
gi|11 : tc----GT-C-AAA--TTG-G-A--A-A-TTG-C--AC-AG-AA-CTGTGTCTCG-C-A-----TA-CT-GGC-ACACTAAAC-TCACTCATACATA--GA-TTCG-AAAGAA--TAC--AC-A----T-C---TATAC--TTACA-Tcattctaattttaaaaaaatctaaaccaactccaattcagaatttcggcatttcagctcaaattatactgtttttgcatatagtaaaattataaagtttataactaagctttgatagttgaatggtactatctccaaacactactttttggccagttcaaacctattagtttagatgtagtattaatattattgtcagacaagcatcacttcca
gi|18 : ttttaatagcgtattttctgcgtgcaatat-AG-AA-ATGT-TCTCG-C-A-CATTTA-CT-TAC-ACACTAAAC-GCACTCGTAC--
gi|14 : -ATACTAAAC-TCATTCATGC--ATAGA-TTCG-AAAAAG--GAA--AA-A----A-AAAGT-TACTTTTACT-TGCT-A-TGTG-TGGA---------AGA-ACAA---CAC----AGAT-G
gi|2 : gT------AAA-A-AACACCAC----AGAT-GCA---GCCC--TTGA---TTCTGAG-AT-------A-TGTGCACTGTAC-ATACTG-T-AC----------GTTTAATAGAAAAGAATAA------------------AT--------------T---TATC-AT-AA-AAAC--AATTTAG-T-T-TA---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAGAAATT-AAATTTATCAAC--AA-TTG-AA-TTT-TAAC-AGCTTAATATTTTTCAAC-ATTATAAt
gi|16 : gTGA--AT-------A-TGTGCACTGTACTATATTG-T-AC----------GT-------------A-CA------------------AT--------------G---TATTAAT-AG-AAAttcatttttaaaatattaatcaatccaattagtgttgcatttttccactttgaacaactaaaaattactgttttgaatatattattataagtttatactaaaactttgaatggcaatctaacttccgctagacctgtgaatactcttcttccctacaccaaaacttacatttttgcatcttaacaactaatagttttagatgtagtattatatactcagtagacaaagactccaatactctatacattgctacatattacaccacaggaatagaagttaatcgcgaccgaaactagtttcaacattcataccactctcaacgaaagcaaacttatatccatactataatttcttgattttttaaagataatattacagtcaactattctatgtaaaatctgtacgtaaccgactggatggaagaactggcagatactttaaaacacactttaaatatatcttttaactctacattgct
gi|12 : -T-AC----------AT-------------GT--------------------AT--------------A---TAT--AT-AA-AAAC--AAT---GTT-G-TA---AAA--TTTC--C--A--ACACAAC-TTTCCAC-TGTT-T--CC----------AGAAAG-AATT-AAATTTATCAAC--AG-TTG-
gi|15 : gtacgtacatgtatcaatagaaaagaa--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-ATTT-ATATTTATCAAC--AG-TTG-AATTTT-TATC-AGATATATATTTTTCAAC-ATTATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 1111 44444444444444444444444444444444 11111111 11 111 1 1111111 1111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 11111111111 2222222222 1
lowQualScore : 4 777777 0 3 77 2222 0 66666666666666666666666666666666 3 3 3 3 00000000 3 55 3 3 3 3 6 55 3 3 3 3 1 99999 3 3 55 00 66 7777 000 3 1 3 4 4 4 4444444 0 4 55 4 7777 9999 4 888 66 3 4 777777 66 777 8 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 5 33 33333333333 77 66 66 66 5 5 5 66 1111111111 7 5 0 5 0 0 5 5 0 5 1 5 3 5
lowQualScore : . ...... . . .. .... . ................................ . . . . ........ . .. . . . . . .. . . . . . ..... . . .. .. .. .... ... . . . . . . ....... . . .. . .... .... . ... .. . . ...... .. ... . .......................................................................................... . . .. ........... .. .. .. .. . . . .. .......... . . . . . . . . . . . . . .
lowQualScore : 4 111111 4 3 99 9999 4 00000000000000000000000000000000 3 3 3 6 66666666 6 00 3 3 3 3 7 88 3 3 1 3 3 66666 6 6 00 00 55 7777 000 6 5 6 0 0 4 4444444 8 0 55 0 1111 4444 4 888 99 2 4 222222 11 888 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 0 66 11111111111 99 99 99 99 0 0 0 99 9999999999 6 0 1 0 5 1 0 0 0 7 7 7 0 7
consensus : ATGCTTTA-TTTCTGTGTTGCA--T-CATAT-ATATCA--TATT----ACA----------------T-A------CAA----GT-C-AAA-ATTG-A-T--A-T-TTG-C--AC-AG-AA-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----TA---T-TACTTTTACA-TGCT-A-TGTG-AG-------GAAA-AA--A-AAAC-CCAC----AGAT-GCA---GCCC--TTAGATCTGA-AT-A-TG-TACACTGTAC--TAT---ATTGT-AC----------GT-------------AT---------------NAAT--------------A-----------------TAT---------AT-AA-AAAC--AATGT--T-T-TT---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAACAG-T-TG-AATTTT-TAAC-AGATATATATTTTTCAAC-ATTATAA
Reference ( family-5062 ) : ATGCTTTA-TTTCTGTGTTGCA--T-CATAT-ATATCA--TATT----ACA----------------T-A------CAA----GT-C-AAA-ATTG-A-T--A-T-TTG-C--AC-AG-AA-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----TA---T-TACTTTTACA-TGCT-A-TGTG-AG-------GAAA-AA--A-AAAC-CCAC----AGAT-GCA---GCCC--TTAGATCTGA-AT-A-TG-TACACTGTAC--TAT---ATTGT-AC----------GT-------------AT---------------NAAT--------------A-----------------TAT---------AT-AA-AAAC--AATGT--T-T-TT---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAACAG-T-TG-AATTTT-TAAC-AGATATATATTTTTCAAC-ATTATAA
gi|1 : ATGTTTAA-TTTCTGTGCTGC-----TATATTACATTA--TGTTGAA-ACA----------------T-TGT----CAA----ATTC-AAA-ATTG-A-TG-A-TCTTG-C--AC-AG-AA-ATGT-TATCGC-AC-GATTATCT-TGC-ACACTAAA-T-TGCTCAATC--A--GATTTCG-AAAGAA--AAATGAT-A----TA---T-AAC-TTTACA-T-CT-ATTGTG-CA-------GAAA-AACCA-AAACACCAC----AGA--ACA---GCC------GA------------G-TGCACTG-AC--TAT---ATTGTAACG---------GT-------------AT---------------TAAT--------------AGATAAGAATAAATAAACTAT---------ATAAA-AAACA-AATGT--T-G-TT---AAA---TTC--CAAA--ACACAGG-TATCC-C-TGTTGC--CC----------ATAAGA-AATTGAAATTAATCAACAG-TGTATAATTTTGTAACAAGCTATATAATTTT-AAC-ATTATAA
gi|10 : taataATGCTTTA-TTTCTGTGC-GCA--T-----T-ATATTA--TATT----A--------------------A------CAAAATTGT-C-AAA-ATTG-AGT--A-T-TT--C--ACCAG-AACATGT--CTCGC-AC--CTTA-CT-TGC-AT-CTAA-CT-C-CTCATAC--A--GA-TTCG-AAAGAA--AAA--A--A----TA---T-TACTTTACCATTGCT-A-tattcatttttaaaaaaattaattcaaaaatccattaggttttgttgcattttttcactacattttgaaacaactaaaatactgttttgaatactaagtaatattagatagtttattatactaaatctttggtaattgaatgatactcgtctccaaaaatataaacataaattctgcgcatttaaaagctataacgtttaagatttgtagtcaatataataatggtgagactaagcatgacattccaaataatgcttacatattccacatgaaaatgtatgtatccagatagttttcacaacttcttataacagagtacaaacttattattatctatacattctctttgattttttttaagataatcatctaacaaggtcctattttctatgtaaaattctggtagctgaacacactggattgaagactggcagatactttaaaacacactttatatatatatattttttaacttacacttac
gi|11 : taa-ATAGCG--TATTTTCTGCG----------------T-G------CAATAT-GT-C-AAA--TTG-G-A--A-A-TTG-C--AC-AG-AA-CTGTGTCTCGC-A-----TA-CT-GGC-ACACTAAACT-CACTCATACATA--GA-TTCG-AAAGAA--TAC--AC-A----TC---TATAC--TTACA-Taggg
gi|12 : ttttaT-AC----------AT-------------GT-----------------AT--------------A-----------------TAT---------AT-AA-AAAC--AATGT--T-G-TA---AAA--TTTC--C--A--ACACAAC-TTTCCAC-TGTT-T--CC----------AGAAAG-AATT-AAATTTATCAACAG-T-TG-
gi|13 : gtacgtacatgtatcaatagaaaagaaTTTA-TTTCTGTGTTGCA--T----AT-ACATCA--TATT----ACAAAATTAAAAACCAAAAT-AAAAACTCAA----AT-C-AAA-AGAG-A-T--A-T-TTGTC--AC-AG-AA-ATGT-TCTCAC-AC-----A-CT-TGC-ATACT
gi|14 : -ATACTAAACT-CATTCATGC--ATAGA-TTCG-AAAAAG--GAA--AA-A----AAAAGT-TACTTTTACT-TGCT-A-TGTG-TG-------GAAG-AA--C-AA----CAC----AGAT-G
gi|15 : g--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-ATTT-ATATTTATCAACAG-T-TG-AATTTT-TATC-AGATATATATTTTTCAAC-ATTATAt
gi|16 : TGA-AT-A-TG-TGCACTGTAC--TAT---ATTGT-AC----------GT-------------A----------------CAAT--------------G-----------------TATTA-------AT-AG-AAA
gi|17 : TTCA-TTTCTGTGTTG------CATAT-CTATCA--TATT----ACA--------------------------AA----AT-C-AAA-A
gi|18 : -AG-AA-ATGT-TCTCGC-AC-ATTTA-CT-TAC-ACACTAAACG-CACTCGTAC--atcaa
gi|2 : -AA--A-AAACACCAC----AGAT-GCA---GCCC--TTGATTCTGAGAT-A-TG-TGCACTGTAC---AT---ACTGT-AC----------GTTTAATAGAAAAGAAT---------------AAAT--------------T-----------------TATC--------AT-AA-AAAC--AATTTAGT-T-TA---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAGAAATT-AAATTTATCAACAA-T-TG-AA-TTT-TAAC-AGCTTAATATTTTTCAAC-ATTATAA
gi|3 : gt-CATAT-ATATCACCTATT----ACA----------------T-A------CAA----G--C-AAA-TTTG-A-T--A-T-T-G-C--AC-AGCAA-ATGT-TCTCGCTCC-ACT-A-CTCTGCCACACTAAACT-CACTCATA---A--GA-TT-G-AAAGAG--AAA--ATGA----TA---T-TACTTTTACA-TGCT-A--GTG-A-----------A-AA--A-AACC-CCACCACAAGATAGCA---GCCCACTTAGATCTGA-AT-AATG-TACACTGTAC--TAT---ATTGT-AC----------GT-------------ACATGTATCATAGAAAAGAAT--------------A-----------------CATGATATATATAT-AA-AAACATAATGT--T-T-GT---AAAATTCTC--C--ACGACACAAC-TTTCCAC-TGCT-CTTCC----------A-AAAG-AA-T-AAATTTATCAACAG-T-TGAAATTCT-AAAC-AGATATATATTTTTCAACAATTATttcatttttaaaatattaatcaatccaattagtgttgcatttttccactttgaacaactaaaaattactgttttgaatatattattataagtttatactaaaactttgaatggcaatctaacttccgctagacctgtgaatactcttcttccctacaccaaaacttacatttttgcatcttaacaactaatagttttagatgtagtattatatactcagtagacaaagactccaatactctatacattgctacatattacaccacaggaatagaagttaatcgcgaccgaaactagtttcaacattcataccactctcaacgaaagcaaacttatatccatactataatttcttgattttttaaagataatattacagtcaactattctatgtaaaatctgtacgtaaccgactggatggaagaactggcagatactttaaaacacactttaaatatatcttttaactctacattgct
gi|4 : tctgTGCTTTA-TTTCTGTGTTGCA--T--ATAT--TATCAC-TAT-----ACA----------------T-A------CAG----TT-C-AAA-ACTG-A----A-T-TTG-CCAAC-AG-AA-ATGT-TCTTGC--C-ACTTA-C------ATCTTAAACT-CACTCATAC--A--GA-TTCGAAAAGAG--AAA--AT-A----TA---T-TAC-TTTACA-TGCT-A-TGTG-AGGGCATCCGGAA-AA--A-AAAA-CCAC----AGAT-GCA----CCC--TTAGATCTGA-ATAA-TG-TACACTGTAC--TAT---ATTGTAAC----------GT-------------AT---------------CAATAGGAAAGAAATAAAA-----------------TAT---------AT-AATAAAC--AATGT--T-TGTTTAAAAA--TTTCCAC--A--ACACAGCTTTTCCAC-TTTT-C--CC----------A--------------------AACAG-T-TG-AATTTT-TAAC-AGATACATATTTTCGAAC-A-TATAAcattctaattttaaaaaaatctaaaccaactccaattcagaatttcggcatttcagctcaaattatactgtttttgcatatagtaaaattataaagtttataactaagctttgatagttgaatggtactatctccaaacactactttttggccagttcaaacctattagtttagatgtagtattaatattattgtcagacaagcatcacttcca
gi|5 : tatATGCTTTA-TTTCTGTGCTGCAAATACATGT-ATATCA--TATT----AGA----------------T-A------CAA----GT-C-AAA-ATTG-A-T--A-T-TTG-C--AC-AG-AA-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----TA---T-TACTTTTACA-TGCT-A-TGTG-AG-------GAAATAG--A-AAAC-CCAC----AGAT-GCA---GCCG--TTAGATCTGA-AT-A-TG-TACACTGTGC--TAT---ATTGT-AC----------GT-------------AT---------------CAAT--------------A-----------------TAT---------AT-AA-AAAC--AATGC--T-T-TT---AAA--TTTC--C--A--ACGCAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAACTG-T-TG-AATTTT-TAAT-AGATATATATTTTTCAAC-ATTATAAtttattttttaaaaattataatccaattagattgccatttttaataaattattttgatttacataaggatttcccaaactttgaaatcaaaaaacaattcctgctttaaat
gi|6 : ATGCTTTAATTTCTGTGTTACA--T-AAT-T-A-ACCA--TGTT----A-A----------------T---------------GT-CCAAACATTGCA-TTAA-T-TTG-C--AC-AG-AA-ATGT-TTTCGCCATTACCAA-CT-TGC-GCACTAAACTTCCCTCA-AC--A--A----CA-AAA------AA--AC-A----TGG--T-TAACTTTACA-TGCT-A-TGTGAAG-------GAAA-AG--ACAAAG-GCAA----AGAT-GCATGCGCCC--TTACA--------------TACACTGTGC--C-------------------------------------------------------------------------------------------TGT---------AT-AA-TAAC--AATGC--CGT-TT---AAA--TTTC--C--A--ATATAAG-CTTCCACATGTC-C--CCCTCCCCCCCAAAAAAA-AATT-ATA-TTATCAACAGCT-TG-AATTTT-TA-----ATATATATTATTTAGC-ATTATA
gi|7 : taaaATGCTTT--TTTCT-TGTTGC-----CATAT-ATATCA--ATTT----ACA----------------T-A------CAT----GT-C-AAA-ACTG-A-T--A-------------------AT----CTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCA-AC--------------AAGAG--AAA--AT-A----TA---T-TAC-TTTACA-TGCTAA-TGTG-AG-------G-GA-AA--A-AAAC-----------AT-GCA---GCCC--TTAGATCTGA-AT-A-AGTTACA-TGGACATTATTGCATTGT-ATAACAGAAGAAAT-------------AT---------------AAAT--------------A-----------------TAT---------AT-Attttttcctttttgaaaa
gi|8 : tttaATGCTTTA-TTT----GGTGTA--G-GATAT-ATA-CA--TATT----ACA----------------T---------------GT-C-AAA-ATTG-A-T--A-------------------AT-----TCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATACATA--GA-TTCG-AAAGAGAAAAA--AA-A----TA---T-TACCTTTGCA-TGCT-A-TGTG-AG-------AAAA-CA--A-AA----CAC----AGAT-GCA---GCCC--TTAGATCTGG-AT-A-T-----ACTGTAC--TAT---AGTGT-A
gi|9 : ataTTCTGTGTTGCA--T----GT-ATATCA--TATT----ACA----------------TTA------CAT----GT-C-AAA-ATTG-A-T--AAT-TTG-C--AC-AG-AG-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAAAGAT-ACTAGTA---T-TACTTTTACA-TGCT-A-TGTG-AG-------AAAA-AC--A-AAAtt
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 1111 44444444444444444444444444444444 11111111 11 111 1 1111111 1111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 11111111111 2222222222 1
lowQualScore : 4 777777 0 3 77 2222 0 66666666666666666666666666666666 3 3 3 3 00000000 3 55 3 3 3 3 6 55 3 3 3 3 1 99999 3 3 55 00 66 7777 000 3 1 3 4 4 4 4444444 0 4 55 4 7777 9999 4 888 66 3 4 777777 66 777 8 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 5 33 33333333333 77 66 66 66 5 5 5 66 1111111111 7 5 0 5 0 0 5 5 0 5 1 5 3 5
lowQualScore : . ...... . . .. .... . ................................ . . . . ........ . .. . . . . . .. . . . . . ..... . . .. .. .. .... ... . . . . . . ....... . . .. . .... .... . ... .. . . ...... .. ... . .......................................................................................... . . .. ........... .. .. .. .. . . . .. .......... . . . . . . . . . . . . . .
lowQualScore : 4 111111 4 3 99 9999 4 00000000000000000000000000000000 3 3 3 6 66666666 6 00 3 3 3 3 7 88 3 3 1 3 3 66666 6 6 00 00 55 7777 000 6 5 6 0 0 4 4444444 8 0 55 0 1111 4444 4 888 99 2 4 222222 11 888 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 0 66 11111111111 99 99 99 99 0 0 0 99 9999999999 6 0 1 0 5 1 0 0 0 7 7 7 0 7
consensus : ATGCTTTA-TTTCTGTGTTGCA--T-CATAT-ATATCA--TATT----ACA----------------T-A------CAA----GT-C-AAA-ATTG-A-T--A-T-TTG-C--AC-AG-AA-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----TA---T-TACTTTTACA-TGCT-A-TGTG-AG-------GAAA-AA--A-AAAC-CCAC----AGAT-GCA---GCCC--TTAGATCTGA-AT-A-TG-TACACTGTAC--TAT---ATTGT-AC----------GT-------------AT---------------NAAT--------------A-----------------TAT---------AT-AA-AAAC--AATGT--T-T-TT---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAACAG-T-TG-AATTTT-TAAC-AGATATATATTTTTCAAC-ATTATAA
Reference ( family-5062 ) : ATGCTTTA-TTTCTGTGTTGCA--T-CATAT-ATATCA--TATT----ACA----------------T-A------CAA----GT-C-AAA-ATTG-A-T--A-T-TTG-C--AC-AG-AA-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----TA---T-TACTTTTACA-TGCT-A-TGTG-AG-------GAAA-AA--A-AAAC-CCAC----AGAT-GCA---GCCC--TTAGATCTGA-AT-A-TG-TACACTGTAC--TAT---ATTGT-AC----------GT-------------AT---------------NAAT--------------A-----------------TAT---------AT-AA-AAAC--AATGT--T-T-TT---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAACAG-T-TG-AATTTT-TAAC-AGATATATATTTTTCAAC-ATTATAA
gi|1 : ATGTTTAA-TTTCTGTGCTGC-----TATATTACATTA--TGTTGAA-ACA----------------T-TGT----CAA----ATTC-AAA-ATTG-A-TG-A-TCTTG-C--AC-AG-AA-ATGT-TATCGC-AC-GATTATCT-TGC-ACACTAAA-T-TGCTCAATC--A--GATTTCG-AAAGAA--AAATGAT-A----TA---T-AAC-TTTACA-T-CT-ATTGTG-CA-------GAAA-AACCA-AAACACCAC----AGA--ACA---GCC------GA------------G-TGCACTG-AC--TAT---ATTGTAACG---------GT-------------AT---------------TAAT--------------AGATAAGAATAAATAAACTAT---------ATAAA-AAACA-AATGT--T-G-TT---AAA---TTC--CAAA--ACACAGG-TATCC-C-TGTTGC--CC----------ATAAGA-AATTGAAATTAATCAACAG-TGTATAATTTTGTAACAAGCTATATAATTTT-AAC-ATTATAA
gi|10 : taataATGCTTTA-TTTCTGTGC-GCA--T-----T-ATATTA--TATT----A--------------------A------CAAAATTGT-C-AAA-ATTG-AGT--A-T-TT--C--ACCAG-AACATGT--CTCGC-AC--CTTA-CT-TGC-AT-CTAA-CT-C-CTCATAC--A--GA-TTCG-AAAGAA--AAA--A--A----TA---T-TACTTTACCATTGCT-A-tattcatttttaaaaaaattaattcaaaaatccattaggttttgttgcattttttcactacattttgaaacaactaaaatactgttttgaatactaagtaatattagatagtttattatactaaatctttggtaattgaatgatactcgtctccaaaaatataaacataaattctgcgcatttaaaagctataacgtttaagatttgtagtcaatataataatggtgagactaagcatgacattccaaataatgcttacatattccacatgaaaatgtatgtatccagatagttttcacaacttcttataacagagtacaaacttattattatctatacattctctttgattttttttaagataatcatctaacaaggtcctattttctatgtaaaattctggtagctgaacacactggattgaagactggcagatactttaaaacacactttatatatatatattttttaacttacacttac
gi|11 : taa-ATAGCG--TATTTTCTGCG----------------T-G------CAATAT-GT-C-AAA--TTG-G-A--A-A-TTG-C--AC-AG-AA-CTGTGTCTCGC-A-----TA-CT-GGC-ACACTAAACT-CACTCATACATA--GA-TTCG-AAAGAA--TAC--AC-A----TC---TATAC--TTACA-Taggg
gi|12 : ttttaT-AC----------AT-------------GT-----------------AT--------------A-----------------TAT---------AT-AA-AAAC--AATGT--T-G-TA---AAA--TTTC--C--A--ACACAAC-TTTCCAC-TGTT-T--CC----------AGAAAG-AATT-AAATTTATCAACAG-T-TG-
gi|13 : gtacgtacatgtatcaatagaaaagaaTTTA-TTTCTGTGTTGCA--T----AT-ACATCA--TATT----ACAAAATTAAAAACCAAAAT-AAAAACTCAA----AT-C-AAA-AGAG-A-T--A-T-TTGTC--AC-AG-AA-ATGT-TCTCAC-AC-----A-CT-TGC-ATACT
gi|14 : -ATACTAAACT-CATTCATGC--ATAGA-TTCG-AAAAAG--GAA--AA-A----AAAAGT-TACTTTTACT-TGCT-A-TGTG-TG-------GAAG-AA--C-AA----CAC----AGAT-G
gi|15 : g--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-ATTT-ATATTTATCAACAG-T-TG-AATTTT-TATC-AGATATATATTTTTCAAC-ATTATAt
gi|16 : TGA-AT-A-TG-TGCACTGTAC--TAT---ATTGT-AC----------GT-------------A----------------CAAT--------------G-----------------TATTA-------AT-AG-AAA
gi|17 : TTCA-TTTCTGTGTTG------CATAT-CTATCA--TATT----ACA--------------------------AA----AT-C-AAA-A
gi|18 : -AG-AA-ATGT-TCTCGC-AC-ATTTA-CT-TAC-ACACTAAACG-CACTCGTAC--atcaa
gi|2 : -AA--A-AAACACCAC----AGAT-GCA---GCCC--TTGATTCTGAGAT-A-TG-TGCACTGTAC---AT---ACTGT-AC----------GTTTAATAGAAAAGAAT---------------AAAT--------------T-----------------TATC--------AT-AA-AAAC--AATTTAGT-T-TA---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAGAAATT-AAATTTATCAACAA-T-TG-AA-TTT-TAAC-AGCTTAATATTTTTCAAC-ATTATAA
gi|3 : gt-CATAT-ATATCACCTATT----ACA----------------T-A------CAA----G--C-AAA-TTTG-A-T--A-T-T-G-C--AC-AGCAA-ATGT-TCTCGCTCC-ACT-A-CTCTGCCACACTAAACT-CACTCATA---A--GA-TT-G-AAAGAG--AAA--ATGA----TA---T-TACTTTTACA-TGCT-A--GTG-A-----------A-AA--A-AACC-CCACCACAAGATAGCA---GCCCACTTAGATCTGA-AT-AATG-TACACTGTAC--TAT---ATTGT-AC----------GT-------------ACATGTATCATAGAAAAGAAT--------------A-----------------CATGATATATATAT-AA-AAACATAATGT--T-T-GT---AAAATTCTC--C--ACGACACAAC-TTTCCAC-TGCT-CTTCC----------A-AAAG-AA-T-AAATTTATCAACAG-T-TGAAATTCT-AAAC-AGATATATATTTTTCAACAATTATttcatttttaaaatattaatcaatccaattagtgttgcatttttccactttgaacaactaaaaattactgttttgaatatattattataagtttatactaaaactttgaatggcaatctaacttccgctagacctgtgaatactcttcttccctacaccaaaacttacatttttgcatcttaacaactaatagttttagatgtagtattatatactcagtagacaaagactccaatactctatacattgctacatattacaccacaggaatagaagttaatcgcgaccgaaactagtttcaacattcataccactctcaacgaaagcaaacttatatccatactataatttcttgattttttaaagataatattacagtcaactattctatgtaaaatctgtacgtaaccgactggatggaagaactggcagatactttaaaacacactttaaatatatcttttaactctacattgct
gi|4 : tctgTGCTTTA-TTTCTGTGTTGCA--T--ATAT--TATCAC-TAT-----ACA----------------T-A------CAG----TT-C-AAA-ACTG-A----A-T-TTG-CCAAC-AG-AA-ATGT-TCTTGC--C-ACTTA-C------ATCTTAAACT-CACTCATAC--A--GA-TTCGAAAAGAG--AAA--AT-A----TA---T-TAC-TTTACA-TGCT-A-TGTG-AGGGCATCCGGAA-AA--A-AAAA-CCAC----AGAT-GCA----CCC--TTAGATCTGA-ATAA-TG-TACACTGTAC--TAT---ATTGTAAC----------GT-------------AT---------------CAATAGGAAAGAAATAAAA-----------------TAT---------AT-AATAAAC--AATGT--T-TGTTTAAAAA--TTTCCAC--A--ACACAGCTTTTCCAC-TTTT-C--CC----------A--------------------AACAG-T-TG-AATTTT-TAAC-AGATACATATTTTCGAAC-A-TATAAcattctaattttaaaaaaatctaaaccaactccaattcagaatttcggcatttcagctcaaattatactgtttttgcatatagtaaaattataaagtttataactaagctttgatagttgaatggtactatctccaaacactactttttggccagttcaaacctattagtttagatgtagtattaatattattgtcagacaagcatcacttcca
gi|5 : tatATGCTTTA-TTTCTGTGCTGCAAATACATGT-ATATCA--TATT----AGA----------------T-A------CAA----GT-C-AAA-ATTG-A-T--A-T-TTG-C--AC-AG-AA-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----TA---T-TACTTTTACA-TGCT-A-TGTG-AG-------GAAATAG--A-AAAC-CCAC----AGAT-GCA---GCCG--TTAGATCTGA-AT-A-TG-TACACTGTGC--TAT---ATTGT-AC----------GT-------------AT---------------CAAT--------------A-----------------TAT---------AT-AA-AAAC--AATGC--T-T-TT---AAA--TTTC--C--A--ACGCAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAACTG-T-TG-AATTTT-TAAT-AGATATATATTTTTCAAC-ATTATAAtttattttttaaaaattataatccaattagattgccatttttaataaattattttgatttacataaggatttcccaaactttgaaatcaaaaaacaattcctgctttaaat
gi|6 : ATGCTTTAATTTCTGTGTTACA--T-AAT-T-A-ACCA--TGTT----A-A----------------T---------------GT-CCAAACATTGCA-TTAA-T-TTG-C--AC-AG-AA-ATGT-TTTCGCCATTACCAA-CT-TGC-GCACTAAACTTCCCTCA-AC--A--A----CA-AAA------AA--AC-A----TGG--T-TAACTTTACA-TGCT-A-TGTGAAG-------GAAA-AG--ACAAAG-GCAA----AGAT-GCATGCGCCC--TTACA--------------TACACTGTGC--C-------------------------------------------------------------------------------------------TGT---------AT-AA-TAAC--AATGC--CGT-TT---AAA--TTTC--C--A--ATATAAG-CTTCCACATGTC-C--CCCTCCCCCCCAAAAAAA-AATT-ATA-TTATCAACAGCT-TG-AATTTT-TA-----ATATATATTATTTAGC-ATTATA
gi|7 : taaaATGCTTT--TTTCT-TGTTGC-----CATAT-ATATCA--ATTT----ACA----------------T-A------CAT----GT-C-AAA-ACTG-A-T--A-------------------AT----CTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCA-AC--------------AAGAG--AAA--AT-A----TA---T-TAC-TTTACA-TGCTAA-TGTG-AG-------G-GA-AA--A-AAAC-----------AT-GCA---GCCC--TTAGATCTGA-AT-A-AGTTACA-TGGACATTATTGCATTGT-ATAACAGAAGAAAT-------------AT---------------AAAT--------------A-----------------TAT---------AT-Attttttcctttttgaaaa
gi|8 : tttaATGCTTTA-TTT----GGTGTA--G-GATAT-ATA-CA--TATT----ACA----------------T---------------GT-C-AAA-ATTG-A-T--A-------------------AT-----TCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATACATA--GA-TTCG-AAAGAGAAAAA--AA-A----TA---T-TACCTTTGCA-TGCT-A-TGTG-AG-------AAAA-CA--A-AA----CAC----AGAT-GCA---GCCC--TTAGATCTGG-AT-A-T-----ACTGTAC--TAT---AGTGT-A
gi|9 : ataTTCTGTGTTGCA--T----GT-ATATCA--TATT----ACA----------------TTA------CAT----GT-C-AAA-ATTG-A-T--AAT-TTG-C--AC-AG-AG-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAAAGAT-ACTAGTA---T-TACTTTTACA-TGCT-A-TGTG-AG-------AAAA-AC--A-AAAtt
blockSeqs : A AAATAC . CC TTCT AAATTAAAAACCAAAATAAAAACTCAA . C C C TTAAT T CA C C C G T TA . C C T T ATA . A AA AG TG CTAG AAG A T T A . A GGCATCC T . C ACAC CACA A TGC AC T G AATG AT TGC A GTACATGTATCATAGAAAAGAATACATGATATATAT . T AT TTGTTTAA AT CA . CG T A . TT CTCCCCCCCA G A . C . A . T . C A
blockSeqs : . ATA . C . ACAAAATT . . . . GTAT . . . . . . C A . . . . T ATA . . . . C . G . T . . . . . . . . CCC . . . . T . AATG . . . GTTTAATAGAAAAGAATAAATTTATC . . . AGTTTA . . . . . . . . . G . . . . . . A . C .
blockSeqs : . AGG . . . TGCAATAT . . . . TAAT . . . . . . . A . . . . T ATA . . . . A . . . T . . . . . . . . AAC . . . . T . AAGT . . . GTATCAATAGGAAAGAAATAAAATAT . . . CGTTT . . . . . . . . . G . . . . . . A . C .
blockSeqs : . AT . . . TTACAT . . . . AAA . . . . . . . A . . . . T A . . . . T . . . T . . . . . . . . ACC . . . . T . ATG . . . AACAGAAGAAATATAAATATAT . . . TGTA . . . . . . . . . G . . . . . . A . G .
blockSeqs : . AT . . . TACAA . . . . TAT . . . . . . . A . . . . T A . . . . T . . . C . . . . . . . . AGG . . . . T . ATG . . . GTACAATGTATTA . . . TTGT . . . . . . . . . A . . . . . . A . C .
blockSeqs : . AT . . . TACAG . . . . TAT . . . . . . . A . . . . T A . . . . C . . . C . . . . . . . . AC . . . . T . ATG . . . GTATCAATATAT . . . TTTT . . . . . . . . . . . . . . . . . . T .
blockSeqs : . AT . . . TACAA . . . . TAT . . . . . . . A . . . . T A . . . . T . . . T . . . . . . . . . . . . . . . AT . . . ATGTATATAT . . . . . . . . . . . . . . . .
blockSeqs : . C . . . TACAT . . . . AT . . . . . . . A . . . . T A . . . . A . . . . . . . . . . . . . . . . . . . . TGT .
blockSeqs : C . . . AA . . . . TA . . . . . . . . . . . . T A . . . . T . . . . . . . . . . .
blockSeqs : . . . T . . . . TA . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : AC**** **** TACAA*************************** TAT***** ** ** AC** ATG*** ** **
originalCons : ATGCTTTA-TTTCTGTGTTGCA--T-CATAT-ATATCA--TATT----ACA----------------T-A------CAA----GT-C-AAA-ATTG-A-T--A-T-TTG-C--AC-AG-AA-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----TA---T-TACTTTTACA-TGCT-A-TGTG-AG-------GAAA-AA--A-AAAC-CCAC----AGAT-GCA---GCCC--TTAGATCTGA-AT-A-TG-TACACTGTAC--TAT---ATTGT-AC----------GT-------------AT---------------NAAT--------------A-----------------TAT---------AT-AA-AAAC--AATGT--T-T-TT---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAACAG-T-TG-AATTTT-TAAC-AGATATATATTTTTCAAC-ATTATAA
finalCons : ATGCTTTA-TTTCTGTGTTGCAC----ATAT-ATATCA--TATT----ACATACAA---------------------------GT-C-AAA-ATTG-ATAT-----TTG-C--AC-AG-AA-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----TA---T-TACTTTTACA-TGCT-A-TGTG-AG-------GAAA-AA--A-AAAC--CAC----AGAT-GCA---GCCC--TTAGATCTGA-ATATG---TACACTGTAC--TAT---ATTGT-AC----------GT-------------AT---------------NAAT--------------A-----------------TAT---------AT-AA-AAAC--AATGT--T-T-TT---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAACAG-T-TG-AATTTT-TAAC-AGATATATATTTTTCAAC-ATTATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111 4444444444444444444444444444444 1111 11 111 1 11111111 11111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11 11111111111 2222222222 1
lowQualScore : 4 8888888 777 1 77 2222 0 6666666666666666666666666666666 3 3 3 3 3333 55 3 55 3 3 3 3 6 55 3 3 3 3 1 99999 3 3 55 00 66 7777 000 3 1 3 4 4 4 66666666 0 4 777777 44444 4 4 4 888 66 3 4 777777 66 777 8 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 66 4 5 33 33333333333 77 66 66 66 5 5 5 66 1111111111 7 5 0 5 0 0 5 5 0 5 1 5 3 5
lowQualScore : . ....... ... . .. .... . ............................... . . . . .... .. . .. . . . . . .. . . . . . ..... . . .. .. .. .... ... . . . . . . ........ . . ...... ..... . . . ... .. . . ...... .. ... . ..................................................................................... .. . . .. ........... .. .. .. .. . . . .. .......... . . . . . . . . . . . . . .
lowQualScore : 4 9999999 666 7 99 9999 4 0000000000000000000000000000000 3 3 3 6 7777 99 6 00 3 3 3 3 7 88 3 3 1 3 3 66666 6 6 00 00 55 7777 000 6 5 6 0 0 4 11111111 8 0 444444 88888 4 4 4 888 99 2 4 222222 11 888 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 77 4 0 66 11111111111 99 99 99 99 0 0 0 99 9999999999 6 0 1 0 5 1 0 0 0 7 7 7 0 7
consensus : ATGCTTTA-TTTCTGTGTTGC-A----CATA--TATATCA--TATT----ACA----------------TA------CAA----GT-C-AAA-ATTG-A-T--AT-TTG-C--AC-AG-AA-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----TA---T-TACTTTTACA-TGCT-A-TGTG-A--------GGAAA-A--A---AAA----ACC-ACA-GAT-GCA---GCCC--TTAGATCTGA-AT-A-TG-TACACTGTAC--TAT---ATTGT-AC----------GT-------------A------TCA----------------AT--------------A-----------------TAT--AT-AA-AAAC--AATGT--T-T-TT---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAACAG-T-TG-AATTTT-TAAC-AGATATATATTTTTCAAC-ATTATAA
Reference ( family-5062 ) : ATGCTTTA-TTTCTGTGTTGC-A----CATA--TATATCA--TATT----ACA----------------TA------CAA----GT-C-AAA-ATTG-A-T--AT-TTG-C--AC-AG-AA-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----TA---T-TACTTTTACA-TGCT-A-TGTG-A--------GGAAA-A--A---AAA----ACC-ACA-GAT-GCA---GCCC--TTAGATCTGA-AT-A-TG-TACACTGTAC--TAT---ATTGT-AC----------GT-------------A------TNA----------------AT--------------A-----------------TAT--AT-AA-AAAC--AATGT--T-T-TT---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAACAG-T-TG-AATTTT-TAAC-AGATATATATTTTTCAAC-ATTATAA
gi|1 : ATGTTTAA-TTTCTGTGCTGCTA----TAT---TACATTA--TGTTGAA-ACA----------------TTGT----CAA----ATTC-AAA-ATTG-A-TG-ATCTTG-C--AC-AG-AA-ATGT-TATCGC-AC-GATTATCT-TGC-ACACTAAA-T-TGCTCAATC--A--GATTTCG-AAAGAA--AAATGAT-A----TA---T-AAC-TTTACA-T-CT-ATTGTGCA--------GAAAA-ACCA---AAAC---ACC-ACA-GA--ACA---GCC------GA------------G-TGCACTG-AC--TAT---ATTGTAACG---------GT-------------A------TTA----------------AT--------------AGATAAGAATAAATAAACTAT--ATAAA-AAACA-AATGT--T-G-TT---AAA---TTC--CAAA--ACACAGG-TATCC-C-TGTTGC--CC----------ATAAGA-AATTGAAATTAATCAACAG-TGTATAATTTTGTAACAAGCTATATAATTTT-AAC-ATTATAA
gi|10 : taataATGCTTTA-TTTCTGTG---C-G----CAT---TATATTA--TATT----A-------------------A------CAAAATTGT-C-AAA-ATTG-AGT--AT-TT--C--ACCAG-AACATGT--CTCGC-AC--CTTA-CT-TGC-AT-CTAA-CT-C-CTCATAC--A--GA-TTCG-AAAGAA--AAA--A--A----TA---T-TACTTTACCATTGCT-A-tattcatttttaaaaaaattaattcaaaaatccattaggttttgttgcattttttcactacattttgaaacaactaaaatactgttttgaatactaagtaatattagatagtttattatactaaatctttggtaattgaatgatactcgtctccaaaaatataaacataaattctgcgcatttaaaagctataacgtttaagatttgtagtcaatataataatggtgagactaagcatgacattccaaataatgcttacatattccacatgaaaatgtatgtatccagatagttttcacaacttcttataacagagtacaaacttattattatctatacattctctttgattttttttaagataatcatctaacaaggtcctattttctatgtaaaattctggtagctgaacacactggattgaagactggcagatactttaaaacacactttatatatatatattttttaacttacacttac
gi|11 : taaATAGCG--TATTTTCTGCG----------------TG------CAATAT-GT-C-AAA--TTG-G-A--AA-TTG-C--AC-AG-AA-CTGTGTCTCGC-A-----TA-CT-GGC-ACACTAAACT-CACTCATACATA--GA-TTCG-AAAGAA--TAC--AC-A----TC---TATAC--TTACA-Taggg
gi|12 : ttttaT-AC----------AT-------------G------T------------------AT--------------A-----------------TAT--AT-AA-AAAC--AATGT--T-G-TA---AAA--TTTC--C--A--ACACAAC-TTTCCAC-TGTT-T--CC----------AGAAAG-AATT-AAATTTATCAACAG-T-TG-
gi|13 : gtacgtacatgtatcaatagaaaagaaTTTA-TTTCTGTGTTGC-A------TA--TACATCA--TATT----ACAAAATTAAAAACCAAAATAAAAACTCAA----AT-C-AAA-AGAG-A-T--AT-TTGTC--AC-AG-AA-ATGT-TCTCAC-AC-----A-CT-TGC-ATACT
gi|14 : -ATACTAAACT-CATTCATGC--ATAGA-TTCG-AAAAAG--GAA--AA-A----AAAAGT-TACTTTTACT-TGCT-A-TGTG-T--------GGAAG-A--A---CAA------C-ACA-GAT-G
gi|15 : g--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-ATTT-ATATTTATCAACAG-T-TG-AATTTT-TATC-AGATATATATTTTTCAAC-ATTATAt
gi|16 : TGA-AT-A-TG-TGCACTGTAC--TAT---ATTGT-AC----------GT-------------A-------CA----------------AT--------------G-----------------TATTAAT-AG-AAA
gi|17 : TTCA-TTTCTGTGTTG-------CATA--TCTATCA--TATT----ACA-------------------------AA----AT-C-AAA-A
gi|18 : -AG-AA-ATGT-TCTCGC-AC-ATTTA-CT-TAC-ACACTAAACG-CACTCGTAC--atcaa
gi|2 : AA-A--A---AAC----ACC-ACA-GAT-GCA---GCCC--TTGATTCTGAGAT-A-TG-TGCACTGTAC---AT---ACTGT-AC----------GTTTAATAGAAAAGAA------TAA----------------AT--------------T-----------------TATC-AT-AA-AAAC--AATTTAGT-T-TA---AAA--TTTC--C--A--ACACAGC-TTTCCAC-TGTT-C--CC----------AGAAAGAAATT-AAATTTATCAACAA-T-TG-AA-TTT-TAAC-AGCTTAATATTTTTCAAC-ATTATAA
gi|3 : gt----CATA--TATATCACCTATT----ACA----------------TA------CAA----G--C-AAA-TTTG-A-T--AT-T-G-C--AC-AGCAA-ATGT-TCTCGCTCC-ACT-A-CTCTGCCACACTAAACT-CACTCATA---A--GA-TT-G-AAAGAG--AAA--ATGA----TA---T-TACTTTTACA-TGCT-A--GTG-A------------A-A--A---AAACCCCACC-ACAAGATAGCA---GCCCACTTAGATCTGA-AT-AATG-TACACTGTAC--TAT---ATTGT-AC----------GT-------------ACATGTATCATAGAAAAGAATACATGAT--------------A-----------------TATATAT-AA-AAACATAATGT--T-T-GT---AAAATTCTC--C--ACGACACAAC-TTTCCAC-TGCT-CTTCC----------A-AAAG-AA-T-AAATTTATCAACAG-T-TGAAATTCT-AAAC-AGATATATATTTTTCAACAATTATttcatttttaaaatattaatcaatccaattagtgttgcatttttccactttgaacaactaaaaattactgttttgaatatattattataagtttatactaaaactttgaatggcaatctaacttccgctagacctgtgaatactcttcttccctacaccaaaacttacatttttgcatcttaacaactaatagttttagatgtagtattatatactcagtagacaaagactccaatactctatacattgctacatattacaccacaggaatagaagttaatcgcgaccgaaactagtttcaacattcataccactctcaacgaaagcaaacttatatccatactataatttcttgattttttaaagataatattacagtcaactattctatgtaaaatctgtacgtaaccgactggatggaagaactggcagatactttaaaacacactttaaatatatcttttaactctacattgct
gi|4 : tctgTGCTTTA-TTTCTGTGTTGC-A----TATA--T-TATCAC-TAT-----ACA----------------TA------CAG----TT-C-AAA-ACTG-A----AT-TTG-CCAAC-AG-AA-ATGT-TCTTGC--C-ACTTA-C------ATCTTAAACT-CACTCATAC--A--GA-TTCGAAAAGAG--AAA--AT-A----TA---T-TAC-TTTACA-TGCT-A-TGTG-AGGGCATCCGGAAA-A--A---AAA----ACC-ACA-GAT-GCA----CCC--TTAGATCTGA-ATAA-TG-TACACTGTAC--TAT---ATTGTAAC----------GT-------------A------TCA----------------ATAGGAAAGAAATAAAA-----------------TAT--AT-AATAAAC--AATGT--T-TGTTTAAAAA--TTTCCAC--A--ACACAGCTTTTCCAC-TTTT-C--CC----------A--------------------AACAG-T-TG-AATTTT-TAAC-AGATACATATTTTCGAAC-A-TATAAcattctaattttaaaaaaatctaaaccaactccaattcagaatttcggcatttcagctcaaattatactgtttttgcatatagtaaaattataaagtttataactaagctttgatagttgaatggtactatctccaaacactactttttggccagttcaaacctattagtttagatgtagtattaatattattgtcagacaagcatcacttcca
gi|5 : tatATGCTTTA-TTTCTGTGCTGC-AAATACATG--TATATCA--TATT----AGA----------------TA------CAA----GT-C-AAA-ATTG-A-T--AT-TTG-C--AC-AG-AA-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAA--AT-A----TA---T-TACTTTTACA-TGCT-A-TGTG-A--------GGAAATA--G---AAA----ACCCACA-GAT-GCA---GCCG--TTAGATCTGA-AT-A-TG-TACACTGTGC--TAT---ATTGT-AC----------GT-------------A------TCA----------------AT--------------A-----------------TAT--AT-AA-AAAC--AATGC--T-T-TT---AAA--TTTC--C--A--ACGCAGC-TTTCCAC-TGTT-C--CC----------AGAAAG-AATT-AAATTTATCAACTG-T-TG-AATTTT-TAAT-AGATATATATTTTTCAAC-ATTATAAtttattttttaaaaattataatccaattagattgccatttttaataaattattttgatttacataaggatttcccaaactttgaaatcaaaaaacaattcctgctttaaat
gi|6 : ATGCTTTAATTTCTGTGTT---A----CATAATTA-ACCA--TGTT----A-A----------------T--------------GT-CCAAACATTGCA-TTAAT-TTG-C--AC-AG-AA-ATGT-TTTCGCCATTACCAA-CT-TGC-GCACTAAACTTCCCTCA-AC--A--A----CA-AAA------AA--AC-A----TGG--T-TAACTTTACA-TGCT-A-TGTG-A--------AGGAA-A--AGACAAA----GGC-AAA-GAT-GCATGCGCCC--TTACA--------------TACACTGTGC--C--------------------------------------------------------------------------------------------------TGT--AT-AA-TAAC--AATGC--CGT-TT---AAA--TTTC--C--A--ATATAAG-CTTCCACATGTC-C--CCCTCCCCCCCAAAAAAA-AATT-ATA-TTATCAACAGCT-TG-AATTTT-TA-----ATATATATTATTTAGC-ATTATA
gi|7 : taaaATGCTTT--TTTCT-TGTTGC------CATA--TATATCA--ATTT----ACA----------------TA------CAT----GT-C-AAA-ACTG-A-T--A------------------AT----CTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCA-AC--------------AAGAG--AAA--AT-A----TA---T-TAC-TTTACA-TGCTAA-TGTG-A--------GG-GA-A--A---AAA----AC-------AT-GCA---GCCC--TTAGATCTGA-AT-A-AGTTACA-TGGACATTATTGCATTGT-ATAACAGAAGAAAT-------------A------TAA----------------AT--------------A-----------------TAT--AT-Attttttcctttttgaaaa
gi|8 : tttaATGCTTTA-TTTG-GTGTAGG-A----TATA--TA---CA--TATT----ACA----------------T--------------GT-C-AAA-ATTG-A-T--A------------------AT-----TCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATACATA--GA-TTCG-AAAGAGAAAAA--AA-A----TA---T-TACCTTTGCA-TGCT-A-TGTG-A--------GAAAA-C--A---AAA------C-ACA-GAT-GCA---GCCC--TTAGATCTGG-AT-A-T-----ACTGTAC--TAT---AGTGT-A
gi|9 : ataTTCTGTGTTG-------CATG--TATATCA--TATT----ACAT---------------TA------CAT----GT-C-AAA-ATTG-A-TA-AT-TTG-C--AC-AG-AG-ATGT-TCTCGC-AC-ACTTA-CT-TGC-ACACTAAACT-CACTCATAC--A--GA-TTCG-AAAGAG--AAAAGAT-ACTAGTA---T-TACTTTTACA-TGCT-A-TGTG-A--------GAAAA-A--C---AAA----Att