lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 444444444444444444444444 11111 1 1 11 222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666 3333333 1111 11 1111111111 1111 4444444 2222222222 2222222222222 333333333333333 1111 5555555555555555555555555555555555 111 11 111 222222222 11
lowQualScore : 5 2 555 2 2 6 33 2 2 2 555 6 3 4 3 88 7 4 8888 4 4 4 4 4 4 888888888888888888888888 0 444 4 55555 0 3 11 666666666666 2 3333333333333333333333333333333333333333333333333333333333333333333333333333333 2222222 5 999 4444 66 888 88 4 0 4 55 777 4 4 4 0 3333333333 55 4 2 8888 3 6666 3333333 3 3 77 0000000000 3 6666666666666 111111111111111 66 3 2222 5 5 0000000000000000000000000000000000 0 444 33 444 88 1 8 7 88 3 888888888 77
lowQualScore : . . ... . . . .. . . . ... . . . . .. . . .... . . . . . . ........................ . ... . ..... . . .. ............ . ............................................................................... ....... . ... .... .. ... .. . . . .. ... . . . . .......... .. . . .... . .... ....... . . .. .......... . ............. ............... .. . .... . . .................................. . ... .. ... .. . . . .. . ......... ..
lowQualScore : 4 7 000 9 9 4 99 9 9 9 000 2 6 0 6 66 7 0 5555 4 4 4 4 4 4 111111111111111111111111 4 999 3 77777 7 3 00 444444444444 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333 5555555 7 666 2222 99 888 88 3 7 0 55 000 0 0 0 5 5555555555 55 0 1 9999 1 5555 4444444 1 1 00 8888888888 6 0000000000000 222222222222222 11 2 1111 7 7 4444444444444444444444444444444444 8 000 22 000 66 6 4 3 66 6 000000000 88
consensus : CAAAAATAAATAATT---GTTTG-TTT-CCCC--AA-A-C-CC---GA-CCCTATCAG-G-T-TG--GGTGTG-GGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGG-----GGGGGGGGGGGGGGGGAGGGCACAAGGACTTGTCACGGA-CTNNTTGTCTT-----GTTA---TTTNACACCGTC-G--C-----CTATA-----T--CTA------------TATTT----------NCG-CGTA--A---GCCCATG----TGAGT-------CA-TCG-AAAC---GTTTT--C---ACC-TATGCCGA-TTACAAAA--GCG---C-TTT-GA-AGAAAAGCGGTC---C-----TTT--C-TCGTATTTGACTC---CTC-CCTT----TCAT-T-----GG-AGC-ACCA-NTT---A--G---GATTTC-A-----A-T-----TAAAAAAAAAA--------TT-----TCCA--CACAA----AATTG-G-CAAT---N--AAA-T-TCTTC-CGG----TCGC-AG-CGATTT---TT-TCGG---GTC--GGTCGGGNTT-GGGGAAACA--AACA-ATTA---TT-TATTTTT-GGCCT
Reference ( gi|3 ) : CAAAAGTAAATAAAT---GTTTG-TTT-CCTC--AA-A-C-CC---GA-CCCTATCAG-G-T-TG--GATGTG-GGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGAGGGGAG-----GGGGGGGGGGGGGGGGAAGGCACAGGGACTCATCACAAA-CTTTTTGTCTT-----GTTA---TTTGACACCGT-----------CTAT------T--CTA------------TATTT----------ACA-CGTG--A---GTCCCTG----TGAGT-------CA-TCA-AAAC---ATTTT--C---ACC-AATACCGA-TTACAAAA--GCG---C-TTT-GA-AGAAAAGCGGTT---C-----TTT--C-TCGTATTTGACTC---ATC-CCTT----TCATAG-----GG-AGC-ACCA-ATT---A--T---GATTTC-A-----A-T-----TAAAAAAAAAA--------TT-----TCCA--CACAA----AATTG-G-CAAT---T--AAA-T-TCTTC-CGG----TCGC-GC-CGATTT---TT-TCGG---GTT--GGTCGGGATT-GGGGAAACA--AACA-A-TA---TTGTATTTTA-GGCCT
gi|5 : CAAAAATAAATAATT---GTTTG-TTT-CCCC--AA-AAC-CC---GA-CCCTATCAGAG-T-TG--GTTGGG-TATA----GG-TTA-G-GATAAAAT-ATTTTA-----T-T---------G-----GGGGGGGGAGGGGGGGAGGACACAAGA--TTGTC-CAGAGCTACTTGTCTTTAATTGTTA---TTTGACACCGTCTGATT-----CTATA-----T--TTACAAATAGCAGAATATTTCGTTGATGATGCT-CGTG--ATGAGCCCATG----TGAGT-------CA-TGG-AAAC---GTTTT--C---ACC-TATGCCAA-TTACAAAA--GCG---C-TTT-GA-AGAAAAGTGGTC---C-----TTT--C-TCGTATTTGACTC---CTC-CATT----CCATA------GG-AGC-ACCA-ATT---A--G---GATTTC-A-----A-------TAAAAAAAAAA---------T-----TCCA--CA
gi|4 : ggggcCAAAAATAAATAATT---GTTTT-GTT-CCAT--A------CC---GA-ACTTATCAG-G-T-TGT-GATGT-----A----GG-T-A-G-G-TAAAATGATGTTA-----T------GGGGGG-----GTGGGGGAGGGGGGGG
gi|11 : ggcCAAAAATAAATAA-------TTG-TTT-CCCC--AA-A-C-CC---AAACCCTATCAG-G-TATG--GGTGTG-GGTAAGTAGG-T-A-G-G-TAAAAT-ATCTT------------------G-----GGGGGGGGGGGGGGGTAAtaaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgactttatcacctatgctgattcaaaaacgctttgaaaaaagcggtcctttcatatttgattcctcccttcattgagccaccacttaggattttgattaaaaaaaaaaaaaaaaaatcacacaaaattggccaataaaagtcttccgtgcgcagtgattt
gi|7 : gcCAAACATTAATAATT---GTTTG-TTT-CCCC--AA-A-C-T----GA-CC-TATCAG-G-T-TG--GGTGTG-GGTA----GG-T-A-G-G-CAAAAT-ATTTTATAATTT-T-TGGGGGGGG-----TGGattgttatttttgttggtatggtgtaaaaaggaaataacaccaggccataatacgacaaacaaggtctaggacgtatcaaagtggttcattcccttattggcagatatattgataaacttctaaacgttttttaacct
gi|18 : gcCAAAAATAAATAATT---GTTTG-TTT-CCCC--AA-A-A-CCGCGGA-CCCTATCAG-GTT-TG--GGTGTG-GGTA----Gtaaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccctcaaaacttttcacatatgctgataataaaagtggactcctccctttcattggagcaccagtttaggaaaaatttcacacaaaattggcaataaaaat
gi|19 : gggcCAAAAATAAATAATT---GTTTG-TTT-CCCC--AA-A-C-CT---GA-CCCTAT
gi|20 : gaggcCAAAAATAAATAATT---GTCTG-TTT-CTCC--AA-A-C-CC---Gtgg
gi|6 : cattgggcAAAATTACATAA-T---GTTTG-TTT-CCGCCAAA-A-CGCC---GA-CCCTATCAG-G-T-CG--G---TG-GGGA----GG-T-AAG-G-TAAAAT-ATTTTA-----T-TATGGGGGGGA-----GGGGGGGG
gi|12 : gccaAAAAATAAATAAAT---GGTTGCTTT-CCCC--AA-A-T-CC---GAGCCCTATCAG-G-T-TG--TAGGTGTGGTA----GGCT-A-G-G-CTAGAT-AATTT------T-T-TGGGGGGGG-----Gttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaactcgaaacgttttcacctatgctgattacaaaagcgcttgaagaaaagcggtcctttcttcgtatttgactcctctctttcattggagca
gi|2 : caAAAATAAATAACT---GTTTG-TTT-CCCC--AA-C-C-TG---GA-CCCTATCAG-A-T-TGTTG-TGTG-AGTA----GG-C-A-GAG-TAAAAT-ATTTTT-----TAT-TGGGGGGAGGTGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-----NNNN---NNNNNNNNNNNNAATACAGATACTATAGAGGGT--CAA------------TATTT----------TCG-TGTACAA---G-CCCTG----TGAGT-------CA-TCG-AAAC---GTTTT--C---ACC-TATGCTGA-TTCGAAAA--GCG---C-TTT-GA---AAAAGTGGTC---C-----TTT--C-TCGTATTTGACTC----TCGCCTT----TC-T-------GA-A------A-ATT---T--T---GCTTTT-ATTTATA-T-----TGCAATCATAA--------TTGGTGCTCCA--C-CAATTATGATT--G-CAATAAAT--AAA-T--------------------C-AAATTT---TT---GG---GTC--AGTCGAGATT-CGGGAAACACCAACA-A-TA---TTTTATTTT--GGCCTtacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaactcgaaacgttttcacct
gi|8 : ggccAAAATAAAAAAATATTGTTTG-TTTCCCTT--AA-T-C-CT---GA-CCa
gi|1 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaactcgaaacatttattcacctatgctgatttaccaaaagggtctcccccttcattggagcaccacttaggatttcataaaaaaaaagttgtccaccaaaattggcaataaatatcttccagtcgcagtgatttttgtcaggttcAAAGTAA-TAATT---GTTTG-TTT-CCCC--AACA-C-CC----A-CTCTA-CAG-G-T-TG--GAaggccccatatttaaatgttgtttattttattatacaggct
gi|9 : ggccatAAATAAAA---GTTTG-TTT-CCCC--AA-A-C-CC---GA-CCCTATCAG-G-T-TG--GATGTG-GGTA----G-------------AAT-ATTTTA-----T-T-TTTGGGGctaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaatggctcattgttaatattttacaccgttattttctagatttacaacatatatctatggtcttgaatatagattcaatcggaaactttttctctccctatgccgaattacaaaaactttaagagaaaagtggcttcgtattgactccataccactttcataggatcgcaccaatgattaggatttccaatgaaaacaaaaaattccacacaaacttgagctataagatttctttacggggaattacagtataattttgatttcgggaagtcggtcagattaggaagatataacaatattcattttaggcc
gi|21 : agaccaaATATAT---ATTTG-TTT-TCCC--AA-A-C-CC---GA-CCCTATCAG-gtaaattgttgatatatgtaaaaaggaaacaacaccagcataacgggacaccaaggttgtatcaagtgttcatttccctttatatggcagatatattaaataaaattcgaaacgtttttacctatactgattacaaaagcgctttgaagaaaagcagtcctttctcgtatttgactcctctctttcattggagcaccatttaggat
gi|17 : -TG--GGTGTG-AGTA----GG-T-A-G-G-TAAAAT-ATTTT------------AGGG--------------------------GGCACAAGGACTTGTCACGAA-CTTATTGTCTT-----ATT
gi|1 : TT-----GTTAATATTTTACACCGT------------TAT------TTTCTA------------GATTT----------ACAACATA--T---ATCTATGGTCTTGAATATAGATTCAATCGGAAAC---TTTTT--CTCTCCC-TATGCCGAATTACAAAA--AC------TTT-AAGAGAAAAGTGGCT----------------TCGTATT-GACTCCATACC-ACTT----TCATAG-----GATCGC-ACCA-ATG---A--TTAGGATTTCCA-----A-T-----GAAAACAAAAA--------AT-----TCCA--CACAA----ACTTGAG-CTAT---A--AGATT-TCTTTACGGGGAATTACAGTATAATTTTGATT-TCGGGAAGTC--GGTC-AGATT-AGGAAGATAT-AACA-A-TA---TT-CATTTTA-GGCC
gi|4 : ggccataaagtaataattgtttgtttccccaacacccactctacaggttggactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaatggctca-------CA-T-A-AAACTCGACTTTATC---ACC-TATGCTGA-TT-CAAAA--ACG---C-TTT-GA-A-AAAAGCGGTC---C-----TTT--C---ATATTTGATTC---CTC-CCTT-----CAT-------TG-AGCCACCA-CTT---A--G---GATTTT-G-----A-T-----TAAAAAAAAAAAAAAAAAAT--------CA--CACAA----AATTG-GCCAAT---A--AAA-G-TCTTC-CGT----GCGC-AG-TGATTT---
gi|15 : ggccaaaaataaataattgttttgttccataccgaacttatcaggttgtgatgtaggtaggtaaaatgatgttatgggggggtgggggaggggggggtaaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataa-TCG-AAAC---GTTTT--C---ACT-TATGCCGA-TTACAAAG--GTG---C-TTT-AA-AGAAAAGTGGTC---C-----TTT--T-TCGTATTTGACTC---CTC-CCTT----TCATA------GG-AGC-ACCA-ATT---T--G---GATTTC-A-----A-------TAAAAAA
gi|9 : -TCG-AAAC---GTTTT--T---ACC-TATACTGA-TTACAAAA--GCG---C-TTT-GA-AGAAAAGCAGTC---C-----TTT--C-TCGTATTTGACTC---CTC-TCTT----TCAT-T-----GG-AGC-ACCA-TTT---A--G---GATttc
gi|6 : agaccaaaaataaaagtttgtttccccaaacccgaccctatcaggttggatgtgggtagaatattttatttttgggggtaaattgttgatatatgtaaaaaggaaacaacaccagcataacgggacaccaaggttgtatcaagtgttcatttccctttatatggcagatatattaaataaaat-TCG-AAAC---GTTTT--C---ACC-TATGCTGA-TTACAAAA--GCG---C--TT-GA-AGAAAAGCGGTC---C-----TTT--CTTCGTATTTGACTC---CTC-TCTT----TCAT-T-----GG-AGC-A
gi|14 : gccaaaaattacataatgtttgtttccgccaaaacgccgaccctatcaggtcggtggggaggtaaggtaaaatattttattatgggggggaggggggggttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaac-AAAC---GTTTT--C---ACCTAATGCTGA-TTACAAAA--GCG---C-TTT-GA-AGAAAAGTGGTC---CAGAAGTTT--C-TTGTATTGGACTC---CTC-CCTT----TCAT-T-----GG-AGC-ACTA-CTTTAAA--A---GATTTC-A-----A-T-----AAAAAAAAAAA--------
gi|13 : aacaccagcataacaggacaccaaggtctagggcatatcatgttcatttcccttatggcagatatattaaataaaacttgATGCTGA-TTACAAAAAAGCG---CTTTT-GA-AGAAAAGCGA-T---C-----TTT--T-TCATATTTGACTC---CTC-CCTT----TCATTG-----CG-AGC-ACCA-CTT---ATTT---GATTTC-G-----ATT-----TTAAAAAAAAA--------TT-----TCCA--CACAA----AATTG-G-CAAT---GAAAAA-T-TCTTC-CGG----TTGT-AG-CGA-TT---TT-TCGG---GTTCCGGTCAGGAa
gi|10 : ataaactcacgttttcggaaaggcctataacatagGA-TTACCAAA--ACGTCGC-TTTAGA-AGCAAAAAGGCTTTCC-----TTTATC-TCGTATT-GA-TC---CTC-CCTT-----CATTT-----GA-GTC-ACCACGTG---A--G---GATTTC-A-----A-------TAAAAAGAAA----------T-----TCTAATCACAA----AACTG-G-C
gi|2 : gggtgggttaaattgttttttgttggtatgtgtaaaaaggaaataacaccagcattatataaataggacaccaaggtcaagggcgtatcaagtgttcatttcccttaattatggcagatatattaaattaaacttaaatgaattatcaccttatgtATTTGATTT---ATT-TATTGCAATCATAATTGGTGG-AGC-ACCA-ATT---A--T---GATTGC-A-----A-TATAAATAAAAGCAAAA--------TT-----TTCA--
gi|7 : ggccaaaataaataactgtttgtttccccaacctggaccctatcagattgttgtgtgagtaggcagagtaaaatattttttattggggggaggtggggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacagatactatagagggtcaatattttcgtgtacaagccctgtgagtcatcgaaacgttttcacctatgctgattcgaaaagcgctttgaaaaagtggtcctttctcgtatttgactctcgcctttcGACTC---CTC-CCTT----TCAT-T-----GG-AGC-ACCA-GT--------------------------T-----TAGGAAAAA-----------T-----TTCA--CACAA----AATTG-G-CAAT---A--AAA-ttttgggtcagtcgagattcgggaaacaccaacaatattttattttggccta
gi|8 : gccaaacattaataattgtttgtttccccaaactgacctatcaggttgggtgtgggtaggtaggcaaaatattttataatttttggggggggtggtaaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccctcaaaacttttcacatatgctgataataaaagtgC-CCCT----TCAT-T-----GG-AGC-ACCA-CTT---A--G---GATTTC-A-------------TAAAAAAAAAG--------TTG----TCCA--C-CAA----AATTG-G-CAA----T--AAA-TATCTTC-CAG----TCGC-AG-TGATTT---TTGTCAG---GTTC-GGTCAGGATTAAGGGAAACA--AACA-A-TATTTTTTTATTTTA-GGCCat
gi|18 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaactcgaaacatttattcacctatgctgatttaccaaaagggtctcGG---GTC--CG-CGGTTTT-GGGGAAACA--AACA-ATTA---TT-TATTTTT-GGCCccatatttaaatgttgtttattttattatacaggct
gi|5 : g--GGTCGGGTTTTGGGGAAACA--AACA-ATTA---TT-TATTTTT-GGCCtatcaggtttgggtgtgggtag
gi|2 : gg--GGTCCAGGTT-GGGGAAACA--AACA-GTTA---TT-TATTTT--GGCCctatcagagttggttgggtataggttaggataaaatattttattgggggggggagggggggaggacacaagattgtccagagctacttgtctttaattgttatttgacaccgtctgattctatatttacaaatagcagaatatttcgttgatgatgctcgtgatgagcccatgtgagtcatggaaacgttttcacctatgccaattacaaaagcgctttgaagaaaagtggtcctttctcgtatttgactcctccattccataggagcaccaattaggatttcaataaaaaaaaaattccaca
gi|9 : --GGTCGGGTTT-GGGGAAACA--AAC---------TTTTATTTTT-GGTCTctatcagattgttgtgtgagtaggcagagtaaaatattttttattggggggaggtggggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatacagatactatagagggtcaatattttcgtgtacaagccctgtgagtcatcgaaacgttttcacctatgctgattcgaaaagcgctttgaaaaagtggtcctttctcgtatttgactctcgcctttctgaaaattttgcttttatttatattgcaatcataattggtgctccaccaattatgattgcaataaataaatcaaatttttgggtcagtcgagattcgggaaacaccaacaatattttattttggccta
gi|7 : --GGTCAGT-TT-GGGGAAACA--AACA-ATTA---TTA-ATGTTT-GGCctatcaggttggatgtgggtagaatattttatttttgggggtaaattgttgatatatgtaaaaaggaaacaacaccagcataacgggacaccaaggttgtatcaagtgttcatttccctttatatggcagatatattaaataaaattcgaaacgtttttacctatactgattacaaaagcgctttgaagaaaagcagtcctttctcgtatttgactcctctctttcattggagcaccatttaggat
gi|19 : --GGTCAGGTTT-GGGGAAACA--AACA-ATTA---TT-TATTTTT-GGCCTtatcaggttgggtgtgggtaggtaggcaaaatattttataatttttggggggggtggtaaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccctcaaaacttttcacatatgctgataataaaagtggactcctccctttcattggagcaccagtttaggaaaaatttcacacaaaattggcaataaaaat
gi|21 : g--GGTCGGGTTT-GGGAAAACA--AATATA-TA---Tctattgg
gi|1 : GTGGGTGTT-GGGGAAACA--AACA-ATTA---T--TACTTTATGGCCctatcag
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ATAATTTTGGTGGGTAAATTATTTTTTGTTGGTGTAAAAAGAAAATAACACCAGCATAATAAGACACCAAGGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 222222222 22222 5555555555555555555555555555555555555555555555555555555555555555555555555 2222 3333333 11111111 111111 11111 1111 2222 1111 1111 111 111 11 11 2222
lowQualScore : 3 1 3 3 3 3 6 3 6666 6 3 3 3 77 44 7777 4 4 4 4 4 4 99999999999 2 8 2 555555555 22 2 00000 1 8888888888888888888888888888888888888888888888888888888888888888888888888 9 1111 2222222 3 3 444 44 555 2 3 3 6 3 44 555 3 3 3 0 555 88888 4444 3 555 3 3 44 3 77 555 555 44 3 99999999 000000 4 55555 1 66 1 0000 5 5 4444 777 6 4444 3333 111 88 444 8 11 4 1 6 55 7777 6 4
lowQualScore : . . . . . . . . .... . . . . .. .. .... . . . . . . ........... . . . ......... .. . ..... . ......................................................................... . .... ....... . . ... .. ... . . . . . .. ... . . . . ... ..... .... . ... . . .. . .. ... ... .. . ........ ...... . ..... . .. . .... . . .... ... . .... .... ... .. ... . .. . . . .. .... . .
lowQualScore : 6 5 3 3 3 3 7 3 2222 7 3 6 3 99 55 7777 0 0 0 0 0 0 00000000000 8 0 8 666666666 00 2 00000 0 8888888888888888888888888888888888888888888888888888888888888888888888888 2 2222 5555555 6 3 444 22 444 9 1 7 2 1 22 888 3 3 3 1 888 33333 8888 2 444 1 1 22 1 77 888 888 66 6 11111111 555555 9 66666 1 11 9 6666 0 0 4444 444 7 2222 8888 777 88 000 0 00 0 0 7 88 2222 7 0
consensus : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTC-GTCACG------GA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT---AAAA-T-TCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-GGGGAAACA--AACAA---TTATT-TATTTTNGGCCT
Reference ( family-4969 ) : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTT-GTCACG------GA-CTNNTTGTCTT-----GTTATTTNACACCGTC-G--C-------------CTATA-----TCTA------------TATTTN------------CG-CG-TA--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT---NAAA-T-TCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGNTT-GGGGAAACA--AACAA---TTATT-TATTTTTGGCCT
gi|1 : AAAGT-AA-TAATTGTTT-G-TTTCC-CCAACA-C-CC----A-CTCTA-CAG-G-T-TG--G-
gi|1 : ggccatGACTTAGTCATGAACAATGG-CTCATTGT--T-----AATATTTTACACCGTT-A--T-------------TT--------TCTA------------GATTTA------------CAACA-TA--TATCTATGGTCTTGAATATAGATTCAATCGGAAACT--TTT--TCTCTCCCT-A-TGCCGAATTA-CAAAA--AC------TTT-AAGAGAAAAGTGG-----C-----TT------CGTATT-GACTCCATACCACTTTCAT-AG-GATCG-CACCA-ATGATT---A--GGATTTCCA-----A-TGAAAACA------AAAAAT-----TCCA--CACAA----ACTTGAG-CTAT---AAGATT-TCTTTACGGGGAATTACAGTATAATTTTGATT-TCGGGAAG-T--CGGTC-AGATT-AGGAAGATAT-AACAA----TATT-CATTTTAGGCCactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaatggctcattgttaatattttacaccgttattttctagatttacaacatatatctatggtcttgaatatagattcaatcggaaactttttctctccctatgccgaattacaaaaactttaagagaaaagtggcttcgtattgactccataccactttcataggatcgcaccaatgattaggatttccaatgaaaacaaaaaattccacacaaacttgagctataagatttctttacggggaattacagtataattttgatttcgggaagtcggtcagattaggaagatataacaatattcattttaggcc
gi|10 : ggccataaagtaataattgtttgtttccccaacacccactctacaggttggactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacat-AAATGAATTA--TC---ACCTTA-TGT-GA-TTA-CCAAA--ACGTCGC-TTTAGA-AGCAAAAAGGCTTTCC-----TTTATC-TCGTATT-GA-TCC---TCCC-TTCAT-TT-GA--GTCACCACGT---G---A--GGATTTC-A-----A--TAAAAAG------AAA--T-----TCTAATCACAA----AACTG-G-C
gi|11 : gggtgggttaaattgttttttgttggtatgtgtaaaaaggaaataacaccagcattatataaataggacaccaaggtcaagggcgtatcaagtgttcatttcccttaattatggcagatatattaaattaaacttCAAAAAT-AAATAATTGTTT------CC-CCAA-A-C-CC---AAACCCTATCAG-G-TATG--G-GTGTGGGTAAGTAGG-T-A-G-G-TAAAAT-ATCTT------------GGGGGGGGGGGGGGGG
gi|12 : gcAAAAAT-AAATAAATGGTT-GCTTTCC-CCAA-A-T-CC---GAGCCCTATCAG-G-T-TGTAG-GTGT-GGTA----GGCT-A-G-G-CTAGAT-AATTT------T-T-TGGGGGGGGGtaaattgttatttttgttggtatggtgtaaaaaggaaataacaccaggccataatacgacaaacaaggtctaggacgtatcaaagtggttcattcccttattggcagatatattgataaacttctaaacgttttttaacct
gi|12 : ca-TCG-AAACG--TTT--TC---ACCT-tacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaactcgaaacgttttcacct
gi|13 : caaaaaataaataaatggttgctttccccaaatccgagccctatcaggttgtaggtgtggtaggctaggctagataattttttgggggggggtacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaac-A-TGCTGA-TTA-CAAAAAAGCG---CTTTT-GA-AGAAAAGCGA---T-C-----TTT--T-TCATATTTGACTCC---TCCCTTTCAT-TGCGA--G-CACCA-CT---T---ATTTGATTTC-G-----ATTTTAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAATGA-AAAA-T-TCTTC-CGG----TTGTAG--CGA-TT---TT-TCGG---G-TTCCGGTCAGG
gi|14 : ataaactcacgttttcggaaaggcctataacatag-TTG-AAACG--TTT--TC---ACCT-AATGCTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCCAGAAGTTT--C-TTGTATTGGACTCC---TCCCTTTCAT-TG-GA--G-CACTA-CT---TTAAA--AGATTTC-A-----A-TAAAAAAA------AAAAa
gi|15 : aacaccagcataacaggacaccaaggtctagggcatatcatgttcatttcccttatggcagatatattaaataaaac-TCG-AAACG--TTT--TC---ACTT-A-TGCCGA-TTA-CAAAG--GTG---C-TTT-AA-AGAAAAGTGG---TCC-----TTT--T-TCGTATTTGACTCC---TCCCTTTCAT-AG-GA--G-CACCA-AT---T---T--GGATTTC-A-----A--TAAAAAA------a
gi|17 : -TG--G-GTGTGAGTA----GG-T-A-G-G-TAAAAT-ATTTTA---------------------------------GGGGGCACAAGGACTT-GTCACG------AA-CTTATTGTCTT-----ATTttc
gi|18 : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-A-CCGCGGA-CCCTATCAG-GTT-TG--G-GTGTGGGTA----G
gi|19 : gggcGGTCAGGTTT-GGGGAAACA--AACAA---TTATT-TATTTTTGGCCT
gi|2 : gAAAAT-AAATAACTGTTT-G-TTTCC-CCAA-C-C-TG---GA-CCCTATCAG-A-T-TG--TTGTGTGAGTA----GG-C-A-GAG-TAAAAT-ATTTTT-----TAT-TGGGGGGAGGTGGGGGGGGNNNNNNNNNNNNNNNNNNNNN-NNNNNN------NN-NNNNNNNNNNN-----NNNNNNNNNNNNNNNN-N--NNNNAATACAGATACTATAGAGGGTCAA------------TATTTT------------CG-TG-TACAAGCCC-TG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTC-GAAAA--GCG---C-TTT-GA---AAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCT---CGCCTTTC---TG-AA--------A-AT---T---T--TGCTTTT-ATTTATA-TTGCAATC------ATAATTGGTGCTCCA--C-CAATTATGATT--G-CAATAAATAAA-T-----------------CA----AATTT---TT---GG---G-T--CAGTCGAGATT-CGGGAAACACCAACAA----TATT-TTATTTTGGCCTctattgg
gi|20 : ggccCGGGTTT-GGAGAAACA--GACAA---TTATT-TATTTTTGGCCa
gi|21 : cattgTATTT-G-TTTTC-CCAA-A-C-CC---GA-CCCTATCAG-
gi|3 : atataCAAAAGT-AAATAAATGTTT-G-TTTCC-TCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGAGGGGAGGGGGGGGGGGGGGGGGAAGGCACAGGGACTC-ATCACA------AA-CTTTTTGTCTT-----GTTATTTGACACCGT-------------------CTAT------TCTA------------TATTTA------------CA-CG-TG--AGTCCCTG----TGAGT-------CA-TCA-AAACA--TTT--TC---ACCA-A-TACCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TTC-----TTT--C-TCGTATTTGACTCA---TCCCTTTCATAGG-GA--G-CACCA-AT---T---A--TGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT---TAAA-T-TCTTC-CGG----TCGCGC--CGATTT---TT-TCGG---G-T--TGGTCGGGATT-GGGGAAACA--AACAA----TATTGTATTTTAGGCCT
gi|4 : CAAAAAT-AAATAATTGTTTTG-TT----CCAT-A-C-C----GA-ACTTATCAG-G-T-TGT-G-ATGT----A----GG-T-A-G-G-TAAAATGATGTTA---------TGGGGGGGTGGGGGAGGGGGGGG
gi|4 : ggcACT--TTA--TC---ACCT-A-TGCTGA-TT--CAAAA--ACG---C-TTT-GA-A-AAAAGCGG---TCC-----TTT--C---ATATTTGATTCC---TCCCTT-CAT-TG-AG--C-CACCA-CT---T---A--GGATTTT-G-----A-TTAAAAAAAAAAAAAAAAAA-----T-CA--CACAA----AATTG-GCCAAT---AAAA-G-TCTTC-CGT----GCGCAG--TGATTT---taaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgactttatcacctatgctgattcaaaaacgctttgaaaaaagcggtcctttcatatttgattcctcccttcattgagccaccacttaggattttgattaaaaaaaaaaaaaaaaaatcacacaaaattggccaataaaagtcttccgtgcgcagtgattt
gi|5 : ggccaaaaataaataattgttttgttccataccgaacttatcaggttgtgatgtaggtaggtaaaatgatgttatgggggggtgggggaggggggggtaaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-AAC-CC---GA-CCCTATCAGAG-T-TG--G-TTGGGTATA----GG-TTA-G-GATAAAAT-ATTTTA-----T-T---------GGGGGGGGGAGGGGGGGAGGACACAAGA--TT-GTC-CA------GAGCTACTTGTCTTTAATTGTTATTTGACACCGTCTGATT-------------CTATA-----TTTACAAATAGCAGAATATTTCGTTGATGATGCTCG-TGATG--AGCCCATG----TGAGT-------CA-TGG-AAACG--TTT--TC---ACCT-A-TGCCAA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCATTCCAT-AG-GA--G-CACCA-AT---T---A--GGATTTC-A-----A--TAAAAAA------AAAA-T-----TCCA--CA
gi|6 : ggggcCAAAAATTACATAAT-GTTT-G-TTTCCGCCAA-AACGCC---GA-CCCTATCAG-G-T-CG--G----TGGGGA----GG-T-AAG-G-TAAAAT-ATTTTA-----T-TATGGGGGGGAGGGGGGGG
gi|6 : gc-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTA-CAAAA--GCG---C--TT-GA-AGAAAAGCGG---TCC-----TTT--CTTCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CAttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaactcgaaacgttttcacctatgctgattacaaaagcgcttgaagaaaagcggtcctttcttcgtatttgactcctctctttcattggagca
gi|7 : gccaaaaattacataatgtttgtttccgccaaaacgccgaccctatcaggtcggtggggaggtaaggtaaaatattttattatgggggggaggggggggttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaacCAAACAT-TAATAATTGTTT-G-TTTCC-CCAA-A-C-T----GA-CC-TATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-CAAAAT-ATTTTATAATTT-T-TGGGGGGGGTGG
gi|7 : gc-TCA-AAAC---TTT--TC---ACAT-A-TGCTGA-T-----------------------A-ATAAAAGTGG---------------------------ACTCC---TCCCTTTCAT-TG-GA--G-CACCAGTT---T---A--GG---------------------A------AAAATT-----T-CA--CACAA----AATTG-G-CAAT---AAAA-taaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccctcaaaacttttcacatatgctgataataaaagtggactcctccctttcattggagcaccagtttaggaaaaatttcacacaaaattggcaataaaaat
gi|8 : gccaaacattaataattgtttgtttccccaaactgacctatcaggttgggtgtgggtaggtaggcaaaatattttataatttttggggggggtggtaaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccc-TCG-AAACA--TTTATTC---ACCT-A-TGCTGATTTACCAAAA--Gat
gi|8 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaacTCT---CCCCCTTCAT-TG-GA--G-CACCA-CT---T---A--GGATTTC-A--------TAAAAAA------AAAGTTG----TCCA--C-CAA----AATTG-G-CAAT----AAA-TATCTTC-CAG----TCGCAG--TGATTT---TTGTCAG---GTT--CGGTCAGGATTAAGGGAAACA--AACAATATTTTTT-TATTTTAGGCCggtctcccccttcattggagcaccacttaggatttcataaaaaaaaagttgtccaccaaaattggcaataaatatcttccagtcgcagtgatttttgtcaggttcggtcaggattaagggaaacaaacaatatttttttattttaggccccatatttaaatgttgtttattttattatacaggct
gi|9 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaactcgaaacatttattcacctatgctgatttaccaaaagggCAAAAAT-AAA--A--GTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----G-------------AAT-ATTTTATT---T-T-TGGGGGccatatttaaatgttgtttattttattatacaggct
gi|9 : agac-TCG-AAACG--TTT--TT---ACCT-A-TACTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCAG---TCC-----TTT--C-TCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CACCA-TT---T---A--GGATtaaattgttgatatatgtaaaaaggaaacaacaccagcataacgggacaccaaggttgtatcaagtgttcatttccctttatatggcagatatattaaataaaattcgaaacgtttttacctatactgattacaaaagcgctttgaagaaaagcagtcctttctcgtatttgactcctctctttcattggagcaccatttaggat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAATTTTGGTGGGTAAATTATTTTTTGTTGGTGTAAAAAGAAAATAACACCAGCATAATAAGACACCAAGGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 22222 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 3333333 11111111 111111 11111 1111 111111 1111 1111 111 111 11 11 2222
lowQualScore : 3 0 3 3 3 3 6 3 6666 6 3 3 3 77 44 7777 4 4 4 4 4 4 99999999999 5 0 5 0 8 22 2 00000 9999999999999999999999999999999999999999999999999999999999999999999999999999 9 1111 2222222 3 3 444 44 555 2 3 3 6 3 44 555 3 3 3 0 555 88888 4444 3 555 3 3 44 3 77 555 555 44 3 99999999 000000 4 55555 1 66 1 0000 5 5 222222 5 6 4444 3333 111 88 444 8 11 3 99 99 4444 1 8 8
lowQualScore : . . . . . . . . .... . . . . .. .. .... . . . . . . ........... . . . . . .. . ..... ............................................................................ . .... ....... . . ... .. ... . . . . . .. ... . . . . ... ..... .... . ... . . .. . .. ... ... .. . ........ ...... . ..... . .. . .... . . ...... . . .... .... ... .. ... . .. . .. .. .... . . .
lowQualScore : 3 7 1 1 1 1 2 1 2222 2 3 6 3 99 55 7777 0 0 0 0 0 0 00000000000 8 8 8 8 0 00 2 00000 8888888888888888888888888888888888888888888888888888888888888888888888888888 2 2222 5555555 6 3 444 22 444 9 1 7 2 1 22 888 3 3 3 1 888 33333 8888 2 444 1 1 22 1 77 888 888 66 6 11111111 555555 9 66666 1 11 9 6666 0 0 666666 7 7 2222 8888 777 88 000 0 00 7 44 00 6666 4 0 8
consensus : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-GGGGAAACA--AACAA---TTATT-TATTTTAGGCCT
Reference ( family-4969 ) : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-GGGGAAACA--AACAA---TTATT-TATTTTNGGCCT
gi|1 : AAAGT-AA-TAATTGTTT-G-TTTCC-CCAACA-C-CC----A-CTCTA-CAG-G-T-TG--G-
gi|1 : ggccatGG-CTCATTGT--T-----AATATTTTACACCGTT-A--T-------------TT--------TCTA------------GATTTA------------CAACA-TA--TATCTATGGTCTTGAATATAGATTCAATCGGAAACT--TTT--TCTCTCCCT-A-TGCCGAATTA-CAAAA--AC------TTT-AAGAGAAAAGTGG-----C-----TT------CGTATT-GACTCCATACCACTTTCAT-AG-GATCG-CACCA-ATGATT---A--GGATTTCCA-----A-TGAAAACA------AAAAAT-----TCCA--CACAA----ACTTGAG-CTAT--A---AGATTTCTTTACGGGGAATTACAGTATAATTTTGATT-TCGGGAAG-T--CGGTC-AGATT-AGGAAGATAT-AACAA----TATT-CATTTTAGGCCactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaatggctcattgttaatattttacaccgttattttctagatttacaacatatatctatggtcttgaatatagattcaatcggaaactttttctctccctatgccgaattacaaaaactttaagagaaaagtggcttcgtattgactccataccactttcataggatcgcaccaatgattaggatttccaatgaaaacaaaaaattccacacaaacttgagctataagatttctttacggggaattacagtataattttgatttcgggaagtcggtcagattaggaagatataacaatattcattttaggcc
gi|10 : ggccataaagtaataattgtttgtttccccaacacccactctacaggttggactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaat-AAATGAATTA--TC---ACCTTA-TGT-GA-TTA-CCAAA--ACGTCGC-TTTAGA-AGCAAAAAGGCTTTCC-----TTTATC-TCGTATT-GA-TCC---TCCC-TTCAT-TT-GA--GTCACCACGT---G---A--GGATTTC-A-----A--TAAAAAG------AAA--T-----TCTAATCACAA----AACTG-G-C
gi|11 : gggtgggttaaattgttttttgttggtatgtgtaaaaaggaaataacaccagcattatataaataggacaccaaggtcaagggcgtatcaagtgttcatttcccttaattatggcagatatattaaattaaacttCAAAAAT-AAATAATTGTTT------CC-CCAA-A-C-CC---AAACCCTATCAG-G-TATG--G-GTGTGGGTAAGTAGG-T-A-G-G-TAAAAT-ATCTT------------GGGGGGGGGGGGGGGG
gi|12 : gcAAAAAT-AAATAAATGGTT-GCTTTCC-CCAA-A-T-CC---GAGCCCTATCAG-G-T-TGTAG-GTGT-GGTA----GGCT-A-G-G-CTAGAT-AATTT------T-T-TGGGGGGGGGtaaattgttatttttgttggtatggtgtaaaaaggaaataacaccaggccataatacgacaaacaaggtctaggacgtatcaaagtggttcattcccttattggcagatatattgataaacttctaaacgttttttaacct
gi|12 : ca-TCG-AAACG--TTT--TC---ACCT-tacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaactcgaaacgttttcacct
gi|13 : caaaaaataaataaatggttgctttccccaaatccgagccctatcaggttgtaggtgtggtaggctaggctagataattttttgggggggggtacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaac-A-TGCTGA-TTA-CAAAAAAGCG---CTTTT-GA-AGAAAAGCGA---T-C-----TTT--T-TCATATTTGACTCC---TCCCTTTCAT-TGCGA--G-CACCA-CT---T---ATTTGATTTC-G-----ATTTTAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAATGAA---AAA-TTCTTC-CGG----TTGTAG--CGA-TT---TT-TCGG---G-TTCCGGTCAGGA
gi|14 : ataaactcacgttttcggaaaggcctataacatag-TTG-AAACG--TTT--TC---ACCT-AATGCTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCCAGAAGTTT--C-TTGTATTGGACTCC---TCCCTTTCAT-TG-GA--G-CACTA-CT---TTAAA--AGATTTC-A-----A-TAAAAAAA------AAAA
gi|15 : aacaccagcataacaggacaccaaggtctagggcatatcatgttcatttcccttatggcagatatattaaataaaac-TCG-AAACG--TTT--TC---ACTT-A-TGCCGA-TTA-CAAAG--GTG---C-TTT-AA-AGAAAAGTGG---TCC-----TTT--T-TCGTATTTGACTCC---TCCCTTTCAT-AG-GA--G-CACCA-AT---T---T--GGATTTC-A-----A--TAAAAAA------a
gi|17 : -TG--G-GTGTGAGTA----GG-T-A-G-G-TAAAAT-ATTTTA---------------------------------GGGGGCACAAGGACTTGTCACGAA-CTTATTGTCTT-----ATTttc
gi|18 : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-A-CCGCGGA-CCCTATCAG-GTT-TG--G-GTGTGGGTA----G
gi|19 : gggcCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CT---GA-CCCTAT
gi|2 : gaggcAAAAT-AAATAACTGTTT-G-TTTCC-CCAA-C-C-TG---GA-CCCTATCAG-A-T-TG--TTGTGTGAGTA----GG-C-A-GAG-TAAAAT-ATTTTT-----TAT-TGGGGGGAGGTGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-----NNNNNNNNNNNNNNNN-N--NNNNAATACAGATACTATAGAGGGTCAA------------TATTTT------------CG-TG-TACAAGCCC-TG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTC-GAAAA--GCG---C-TTT-GA---AAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCT---CGCCTTTC---TG-AA--------A-AT---T---T--TGCTTTT-ATTTATA-TTGCAATC------ATAATTGGTGCTCCA--C-CAATTATGATT--G-CAAT--AAATAAA-T----------------CA----AATTT---TT---GG---G-T--CAGTCGAGATT-CGGGAAACACCAACAA---TATTT-TATTTT-GGCCTtgg
gi|20 : ggccCGGGTTT-GGAGAAACA--GACAA---TTATT-TATTTTTGGCCa
gi|21 : cattgTATTT-G-TTTTC-CCAA-A-C-CC---GA-CCCTATCAG-
gi|3 : atataCAAAAGT-AAATAAATGTTT-G-TTTCC-TCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGAGGGGAGGGGGGGGGGGGGGGGGAAGGCACAGGGACTCATCACAAA-CTTTTTGTCTT-----GTTATTTGACAC---C-G--T-------------CTAT------TCTA------------TATTTA------------CA-CG-TG--AGTCCCTG----TGAGT-------CA-TCA-AAACA--TTT--TC---ACCA-A-TACCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TTC-----TTT--C-TCGTATTTGACTCA---TCCCTTTCATAGG-GA--G-CACCA-AT---T---A--TGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--T---AAA-TTCTTC-CGG----TCGCGC--CGATTT---TT-TCGG---G-T--TGGTCGGGATT-GGGGAAACA--AACAA----TATTGTATTTTAGGCCT
gi|4 : CAAAAAT-AAATAATTGTTTTG-TT----CCAT-A-C-C----GA-ACTTATCAG-G-T-TGT-G-ATGT----A----GG-T-A-G-G-TAAAATGATGTTA---------TGGGGGGGTGGGGGAGGGGGGGG
gi|4 : ggcACT--TTA--TC---ACCT-A-TGCTGA-TT--CAAAA--ACG---C-TTT-GA-A-AAAAGCGG---TCC-----TTT--C---ATATTTGATTCC---TCCCTT-CAT-TG-AG--C-CACCA-CT---T---A--GGATTTT-G-----A-TTAAAAAAAAAAAAAAAAAA-----T-CA--CACAA----AATTG-GCCAAT--A---AAA-GTCTTC-CGT----GCGCAG--TGATTT---taaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgactttatcacctatgctgattcaaaaacgctttgaaaaaagcggtcctttcatatttgattcctcccttcattgagccaccacttaggattttgattaaaaaaaaaaaaaaaaaatcacacaaaattggccaataaaagtcttccgtgcgcagtgattt
gi|5 : ggccaaaaataaataattgttttgttccataccgaacttatcaggttgtgatgtaggtaggtaaaatgatgttatgggggggtgggggaggggggggtaaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-AAC-CC---GA-CCCTATCAGAG-T-TG--G-TTGGGTATA----GG-TTA-G-GATAAAAT-ATTTTA-----T-T---------GGGGGGGGGAGGGGGGGAGGACACAAGA--TTGTC-CAGAGCTACTTGTCTTTAATTGTTATTTGACACCGTCTGATT-------------CTATA-----TTTACAAATAGCAGAATATTTCGTTGATGATGCTCG-TGATG--AGCCCATG----TGAGT-------CA-TGG-AAACG--TTT--TC---ACCT-A-TGCCAA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCATTCCAT-AG-GA--G-CACCA-AT---T---A--GGATTTC-A-----A--TAAAAAA------AAAA-T-----TCCA--CA
gi|6 : ggggcCAAAAATTACATAAT-GTTT-G-TTTCCGCCAA-AACGCC---GA-CCCTATCAG-G-T-CG--G----TGGGGA----GG-T-AAG-G-TAAAAT-ATTTTA-----T-TATGGGGGGGAGGGGGGGG
gi|6 : gc-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTA-CAAAA--GCG---C--TT-GA-AGAAAAGCGG---TCC-----TTT--CTTCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CAttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaactcgaaacgttttcacctatgctgattacaaaagcgcttgaagaaaagcggtcctttcttcgtatttgactcctctctttcattggagca
gi|7 : gccaaaaattacataatgtttgtttccgccaaaacgccgaccctatcaggtcggtggggaggtaaggtaaaatattttattatgggggggaggggggggttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaacCAAACAT-TAATAATTGTTT-G-TTTCC-CCAA-A-C-T----GA-CC-TATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-CAAAAT-ATTTTATAATTT-T-TGGGGGGGGTGG
gi|7 : gc-TCA-AAAC---TTT--TC---ACAT-A-TGCTGA-T-----------------------A-ATAAAAGTGG---------------------------ACTCC---TCCCTTTCAT-TG-GA--G-CACCAGTT---T---A--GG---------------------A------AAAATT-----T-CA--CACAA----AATTG-G-CAAT--A---AAA-taaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccctcaaaacttttcacatatgctgataataaaagtggactcctccctttcattggagcaccagtttaggaaaaatttcacacaaaattggcaataaaaat
gi|8 : gccaaacattaataattgtttgtttccccaaactgacctatcaggttgggtgtgggtaggtaggcaaaatattttataatttttggggggggtggtaaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccc-TCG-AAACA--TTTATTC---ACCT-A-TGCTGATTTACCAAAA--Gat
gi|8 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaacTCT---CCCCCTTCAT-TG-GA--G-CACCA-CT---T---A--GGATTTC-A--------TAAAAAA------AAAGTTG----TCCA--C-CAA----AATTG-G-CAAT--A---AAT-ATCTTC-CAG----TCGCAG--TGATTT---TTGTCAG---GTT--CGGTCAGGATTAAGGGAAACA--AACAATATTTTTT-TATTTTAGGCCggtctcccccttcattggagcaccacttaggatttcataaaaaaaaagttgtccaccaaaattggcaataaatatcttccagtcgcagtgatttttgtcaggttcggtcaggattaagggaaacaaacaatatttttttattttaggccccatatttaaatgttgtttattttattatacaggct
gi|9 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaactcgaaacatttattcacctatgctgatttaccaaaagggCAAAAAT-AAA--A--GTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----G-------------AAT-ATTTTATT---T-T-TGGGGGccatatttaaatgttgtttattttattatacaggct
gi|9 : agac-TCG-AAACG--TTT--TT---ACCT-A-TACTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCAG---TCC-----TTT--C-TCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CACCA-TT---T---A--GGATtaaattgttgatatatgtaaaaaggaaacaacaccagcataacgggacaccaaggttgtatcaagtgttcatttccctttatatggcagatatattaaataaaattcgaaacgtttttacctatactgattacaaaagcgctttgaagaaaagcagtcctttctcgtatttgactcctctctttcattggagcaccatttaggat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAATTTTGGTGGGTAAATTATTTTTTGTTGGTGTAAAAAGAAAATAACACCAGCATAATAAGACACCAAGGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 22222 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 3333333 11111111 111111 11111 1111 111111 1111 1111 111 111 11 11 22 333333 1
lowQualScore : 3 2 2 2 2 5 2 5555 6 3 3 3 77 44 7777 4 4 4 4 4 4 99999999999 5 0 5 0 8 22 2 00000 9999999999999999999999999999999999999999999999999999999999999999999999999999 9 1111 2222222 3 3 444 44 555 2 3 3 6 3 44 555 3 3 3 0 555 88888 4444 3 555 3 3 44 3 77 555 555 44 3 99999999 000000 4 55555 1 66 1 0000 5 5 222222 5 6 4444 3333 111 88 444 8 11 6 44 33 444444 0 3
lowQualScore : . . . . . . . .... . . . . .. .. .... . . . . . . ........... . . . . . .. . ..... ............................................................................ . .... ....... . . ... .. ... . . . . . .. ... . . . . ... ..... .... . ... . . .. . .. ... ... .. . ........ ...... . ..... . .. . .... . . ...... . . .... .... ... .. ... . .. . .. .. ...... . .
lowQualScore : 1 9 9 9 9 7 9 1111 2 3 6 3 99 55 7777 0 0 0 0 0 0 00000000000 8 8 8 8 0 00 2 00000 8888888888888888888888888888888888888888888888888888888888888888888888888888 2 2222 5555555 6 3 444 22 444 9 1 7 2 1 22 888 3 3 3 1 888 33333 8888 2 444 1 1 22 1 77 888 888 66 6 11111111 555555 9 66666 1 11 9 6666 0 0 666666 7 7 2222 8888 777 88 000 0 00 4 22 88 555555 0 2
consensus : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACAC-AACAA---TTNTT-TATTTTAGGCCT
Reference ( family-4969 ) : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-GGGGAAACA--AACAA---TTATT-TATTTTAGGCCT
gi|1 : AAAGT-AA-TAATTGTTT-G-TTTCC-CCAACA-C-CC----A-CTCTA-CAG-G-T-TG--G-
gi|1 : ggccatGG-CTCATTGT--T-----AATATTTTACACCGTT-A--T-------------TT--------TCTA------------GATTTA------------CAACA-TA--TATCTATGGTCTTGAATATAGATTCAATCGGAAACT--TTT--TCTCTCCCT-A-TGCCGAATTA-CAAAA--AC------TTT-AAGAGAAAAGTGG-----C-----TT------CGTATT-GACTCCATACCACTTTCAT-AG-GATCG-CACCA-ATGATT---A--GGATTTCCA-----A-TGAAAACA------AAAAAT-----TCCA--CACAA----ACTTGAG-CTAT--A---AGATTTCTTTACGGGGAATTACAGTATAATTTTGATT-TCGGGAAG-T--CGGTC-AGATT-AGGAAGATAT-AACAA----TATT-CATTTTAGGCCactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaatggctcattgttaatattttacaccgttattttctagatttacaacatatatctatggtcttgaatatagattcaatcggaaactttttctctccctatgccgaattacaaaaactttaagagaaaagtggcttcgtattgactccataccactttcataggatcgcaccaatgattaggatttccaatgaaaacaaaaaattccacacaaacttgagctataagatttctttacggggaattacagtataattttgatttcgggaagtcggtcagattaggaagatataacaatattcattttaggcc
gi|10 : ggccataaagtaataattgtttgtttccccaacacccactctacaggttggactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaat-AAATGAATTA--TC---ACCTTA-TGT-GA-TTA-CCAAA--ACGTCGC-TTTAGA-AGCAAAAAGGCTTTCC-----TTTATC-TCGTATT-GA-TCC---TCCC-TTCAT-TT-GA--GTCACCACGT---G---A--GGATTTC-A-----A--TAAAAAG------AAA--T-----TCTAATCACAA----AACTG-G-C
gi|11 : gggtgggttaaattgttttttgttggtatgtgtaaaaaggaaataacaccagcattatataaataggacaccaaggtcaagggcgtatcaagtgttcatttcccttaattatggcagatatattaaattaaacttCAAAAAT-AAATAATTGTTT------CC-CCAA-A-C-CC---AAACCCTATCAG-G-TATG--G-GTGTGGGTAAGTAGG-T-A-G-G-TAAAAT-ATCTT------------GGGGGGGGGGGGGGGG
gi|12 : gcAAAAAT-AAATAAATGGTT-GCTTTCC-CCAA-A-T-CC---GAGCCCTATCAG-G-T-TGTAG-GTGT-GGTA----GGCT-A-G-G-CTAGAT-AATTT------T-T-TGGGGGGGGGtaaattgttatttttgttggtatggtgtaaaaaggaaataacaccaggccataatacgacaaacaaggtctaggacgtatcaaagtggttcattcccttattggcagatatattgataaacttctaaacgttttttaacct
gi|12 : ca-TCG-AAACG--TTT--TC---ACCT-tacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaactcgaaacgttttcacct
gi|13 : caaaaaataaataaatggttgctttccccaaatccgagccctatcaggttgtaggtgtggtaggctaggctagataattttttgggggggggtacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaac-A-TGCTGA-TTA-CAAAAAAGCG---CTTTT-GA-AGAAAAGCGA---T-C-----TTT--T-TCATATTTGACTCC---TCCCTTTCAT-TGCGA--G-CACCA-CT---T---ATTTGATTTC-G-----ATTTTAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAATGAA---AAA-TTCTTC-CGG----TTGTAG--CGA-TT---TT-TCGG---G-TTCCGGTCAGGA
gi|14 : ataaactcacgttttcggaaaggcctataacatag-TTG-AAACG--TTT--TC---ACCT-AATGCTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCCAGAAGTTT--C-TTGTATTGGACTCC---TCCCTTTCAT-TG-GA--G-CACTA-CT---TTAAA--AGATTTC-A-----A-TAAAAAAA------AAAA
gi|15 : aacaccagcataacaggacaccaaggtctagggcatatcatgttcatttcccttatggcagatatattaaataaaac-TCG-AAACG--TTT--TC---ACTT-A-TGCCGA-TTA-CAAAG--GTG---C-TTT-AA-AGAAAAGTGG---TCC-----TTT--T-TCGTATTTGACTCC---TCCCTTTCAT-AG-GA--G-CACCA-AT---T---T--GGATTTC-A-----A--TAAAAAA------a
gi|17 : -TG--G-GTGTGAGTA----GG-T-A-G-G-TAAAAT-ATTTTA---------------------------------GGGGGCACAAGGACTTGTCACGAA-CTTATTGTCTT-----ATTttc
gi|18 : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-A-CCGCGGA-CCCTATCAG-GTT-TG--G-GTGTGGGTA----G
gi|19 : gggcCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CT---GA-CCCTAT
gi|2 : gaggcAAAAT-AAATAACTGTTT-G-TTTCC-CCAA-C-C-TG---GA-CCCTATCAG-A-T-TG--TTGTGTGAGTA----GG-C-A-GAG-TAAAAT-ATTTTT-----TAT-TGGGGGGAGGTGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-----NNNNNNNNNNNNNNNN-N--NNNNAATACAGATACTATAGAGGGTCAA------------TATTTT------------CG-TG-TACAAGCCC-TG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTC-GAAAA--GCG---C-TTT-GA---AAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCT---CGCCTTTC---TG-AA--------A-AT---T---T--TGCTTTT-ATTTATA-TTGCAATC------ATAATTGGTGCTCCA--C-CAATTATGATT--G-CAAT--AAATAAA-T----------------CA----AATTT---TT---GG---G-T--CAGTCGAGATT-CGGGAAACACCAACAA---TATTT-TATTTT-GGCCTtgg
gi|20 : ggccCAAAAAT-AAATAATTGTCT-G-TTTCT-CCAA-A-C-CC---Ga
gi|21 : cattgggcTATTT-G-TTTTC-CCAA-A-C-CC---GA-CCCTATCAG-
gi|3 : atataCAAAAGT-AAATAAATGTTT-G-TTTCC-TCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGAGGGGAGGGGGGGGGGGGGGGGGAAGGCACAGGGACTCATCACAAA-CTTTTTGTCTT-----GTTATTTGACAC---C-G--T-------------CTAT------TCTA------------TATTTA------------CA-CG-TG--AGTCCCTG----TGAGT-------CA-TCA-AAACA--TTT--TC---ACCA-A-TACCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TTC-----TTT--C-TCGTATTTGACTCA---TCCCTTTCATAGG-GA--G-CACCA-AT---T---A--TGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--T---AAA-TTCTTC-CGG----TCGCGC--CGATTT---TT-TCGG---G-T--TGGTCGGGATT-GGGGAAACA--AACAA----TATTGTATTTTAGGCCT
gi|4 : CAAAAAT-AAATAATTGTTTTG-TT----CCAT-A-C-C----GA-ACTTATCAG-G-T-TGT-G-ATGT----A----GG-T-A-G-G-TAAAATGATGTTA---------TGGGGGGGTGGGGGAGGGGGGGG
gi|4 : ggcACT--TTA--TC---ACCT-A-TGCTGA-TT--CAAAA--ACG---C-TTT-GA-A-AAAAGCGG---TCC-----TTT--C---ATATTTGATTCC---TCCCTT-CAT-TG-AG--C-CACCA-CT---T---A--GGATTTT-G-----A-TTAAAAAAAAAAAAAAAAAA-----T-CA--CACAA----AATTG-GCCAAT--A---AAA-GTCTTC-CGT----GCGCAG--TGATTT---taaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgactttatcacctatgctgattcaaaaacgctttgaaaaaagcggtcctttcatatttgattcctcccttcattgagccaccacttaggattttgattaaaaaaaaaaaaaaaaaatcacacaaaattggccaataaaagtcttccgtgcgcagtgattt
gi|5 : ggccaaaaataaataattgttttgttccataccgaacttatcaggttgtgatgtaggtaggtaaaatgatgttatgggggggtgggggaggggggggtaaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-AAC-CC---GA-CCCTATCAGAG-T-TG--G-TTGGGTATA----GG-TTA-G-GATAAAAT-ATTTTA-----T-T---------GGGGGGGGGAGGGGGGGAGGACACAAGA--TTGTC-CAGAGCTACTTGTCTTTAATTGTTATTTGACACCGTCTGATT-------------CTATA-----TTTACAAATAGCAGAATATTTCGTTGATGATGCTCG-TGATG--AGCCCATG----TGAGT-------CA-TGG-AAACG--TTT--TC---ACCT-A-TGCCAA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCATTCCAT-AG-GA--G-CACCA-AT---T---A--GGATTTC-A-----A--TAAAAAA------AAAA-T-----TCCA--CA
gi|6 : ggggcCAAAAATTACATAAT-GTTT-G-TTTCCGCCAA-AACGCC---GA-CCCTATCAG-G-T-CG--G----TGGGGA----GG-T-AAG-G-TAAAAT-ATTTTA-----T-TATGGGGGGGAGGGGGGGG
gi|6 : gc-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTA-CAAAA--GCG---C--TT-GA-AGAAAAGCGG---TCC-----TTT--CTTCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CAttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaactcgaaacgttttcacctatgctgattacaaaagcgcttgaagaaaagcggtcctttcttcgtatttgactcctctctttcattggagca
gi|7 : gccaaaaattacataatgtttgtttccgccaaaacgccgaccctatcaggtcggtggggaggtaaggtaaaatattttattatgggggggaggggggggttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaacCAAACAT-TAATAATTGTTT-G-TTTCC-CCAA-A-C-T----GA-CC-TATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-CAAAAT-ATTTTATAATTT-T-TGGGGGGGGTGG
gi|7 : gc-TCA-AAAC---TTT--TC---ACAT-A-TGCTGA-T-----------------------A-ATAAAAGTGG---------------------------ACTCC---TCCCTTTCAT-TG-GA--G-CACCAGTT---T---A--GG---------------------A------AAAATT-----T-CA--CACAA----AATTG-G-CAAT--A---AAA-taaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccctcaaaacttttcacatatgctgataataaaagtggactcctccctttcattggagcaccagtttaggaaaaatttcacacaaaattggcaataaaaat
gi|8 : gccaaacattaataattgtttgtttccccaaactgacctatcaggttgggtgtgggtaggtaggcaaaatattttataatttttggggggggtggtaaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccc-TCG-AAACA--TTTATTC---ACCT-A-TGCTGATTTACCAAAA--Gat
gi|8 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaacTCT---CCCCCTTCAT-TG-GA--G-CACCA-CT---T---A--GGATTTC-A--------TAAAAAA------AAAGTTG----TCCA--C-CAA----AATTG-G-CAAT--A---AAT-ATCTTC-CAG----TCGCAG--TGATTT---TTGTCAG---GTT--CGGTCAGGATTAAGGGAAACA--AACAATATTTTTT-TATTTTAGGCCggtctcccccttcattggagcaccacttaggatttcataaaaaaaaagttgtccaccaaaattggcaataaatatcttccagtcgcagtgatttttgtcaggttcggtcaggattaagggaaacaaacaatatttttttattttaggccccatatttaaatgttgtttattttattatacaggct
gi|9 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaactcgaaacatttattcacctatgctgatttaccaaaagggCAAAAAT-AAA--A--GTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----G-------------AAT-ATTTTATT---T-T-TGGGGGccatatttaaatgttgtttattttattatacaggct
gi|9 : agac-TCG-AAACG--TTT--TT---ACCT-A-TACTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCAG---TCC-----TTT--C-TCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CACCA-TT---T---A--GGATtaaattgttgatatatgtaaaaaggaaacaacaccagcataacgggacaccaaggttgtatcaagtgttcatttccctttatatggcagatatattaaataaaattcgaaacgtttttacctatactgattacaaaagcgctttgaagaaaagcagtcctttctcgtatttgactcctctctttcattggagcaccatttaggat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAATTTTGGTGGGTAAATTATTTTTTGTTGGTGTAAAAAGAAAATAACACCAGCATAATAAGACACCAAGGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 22222 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 3333333 11111111 111111 11111 1111 111111 1111 1111 111 111 11 11 22 222222
lowQualScore : 3 2 2 2 2 5 2 5555 6 3 3 3 77 44 7777 4 4 4 4 4 4 99999999999 5 0 5 0 8 22 2 00000 9999999999999999999999999999999999999999999999999999999999999999999999999999 9 1111 2222222 3 3 444 44 555 2 3 3 6 3 44 555 3 3 3 0 555 88888 4444 3 555 3 3 44 3 77 555 555 44 3 99999999 000000 4 55555 1 66 1 0000 5 5 222222 5 6 4444 3333 111 88 444 8 11 6 00 99 555555 3
lowQualScore : . . . . . . . .... . . . . .. .. .... . . . . . . ........... . . . . . .. . ..... ............................................................................ . .... ....... . . ... .. ... . . . . . .. ... . . . . ... ..... .... . ... . . .. . .. ... ... .. . ........ ...... . ..... . .. . .... . . ...... . . .... .... ... .. ... . .. . .. .. ...... .
lowQualScore : 1 9 9 9 9 7 9 1111 2 3 6 3 99 55 7777 0 0 0 0 0 0 00000000000 8 8 8 8 0 00 2 00000 8888888888888888888888888888888888888888888888888888888888888888888888888888 2 2222 5555555 6 3 444 22 444 9 1 7 2 1 22 888 3 3 3 1 888 33333 8888 2 444 1 1 22 1 77 888 888 66 6 11111111 555555 9 66666 1 11 9 6666 0 0 666666 7 7 2222 8888 777 88 000 0 00 4 88 00 888888 2
consensus : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACA-CAACAA---TNTTTTATTTTAGGCCT
Reference ( family-4969 ) : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACA-CAACAA---TTNTTTATTTTAGGCCT
gi|1 : AAAGT-AA-TAATTGTTT-G-TTTCC-CCAACA-C-CC----A-CTCTA-CAG-G-T-TG--G-
gi|1 : ggccatGG-CTCATTGT--T-----AATATTTTACACCGTT-A--T-------------TT--------TCTA------------GATTTA------------CAACA-TA--TATCTATGGTCTTGAATATAGATTCAATCGGAAACT--TTT--TCTCTCCCT-A-TGCCGAATTA-CAAAA--AC------TTT-AAGAGAAAAGTGG-----C-----TT------CGTATT-GACTCCATACCACTTTCAT-AG-GATCG-CACCA-ATGATT---A--GGATTTCCA-----A-TGAAAACA------AAAAAT-----TCCA--CACAA----ACTTGAG-CTAT--A---AGATTTCTTTACGGGGAATTACAGTATAATTTTGATT-TCGGGAAG-T--CGGTC-AGATT-AGGAAGATA-TAACAA----TATTCATTTTAGGCCactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaatggctcattgttaatattttacaccgttattttctagatttacaacatatatctatggtcttgaatatagattcaatcggaaactttttctctccctatgccgaattacaaaaactttaagagaaaagtggcttcgtattgactccataccactttcataggatcgcaccaatgattaggatttccaatgaaaacaaaaaattccacacaaacttgagctataagatttctttacggggaattacagtataattttgatttcgggaagtcggtcagattaggaagatataacaatattcattttaggcc
gi|10 : ggccataaagtaataattgtttgtttccccaacacccactctacaggttggactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaat-AAATGAATTA--TC---ACCTTA-TGT-GA-TTA-CCAAA--ACGTCGC-TTTAGA-AGCAAAAAGGCTTTCC-----TTTATC-TCGTATT-GA-TCC---TCCC-TTCAT-TT-GA--GTCACCACGT---G---A--GGATTTC-A-----A--TAAAAAG------AAA--T-----TCTAATCACAA----AACTG-G-C
gi|11 : gggtgggttaaattgttttttgttggtatgtgtaaaaaggaaataacaccagcattatataaataggacaccaaggtcaagggcgtatcaagtgttcatttcccttaattatggcagatatattaaattaaacttCAAAAAT-AAATAATTGTTT------CC-CCAA-A-C-CC---AAACCCTATCAG-G-TATG--G-GTGTGGGTAAGTAGG-T-A-G-G-TAAAAT-ATCTT------------GGGGGGGGGGGGGGGG
gi|12 : gcAAAAAT-AAATAAATGGTT-GCTTTCC-CCAA-A-T-CC---GAGCCCTATCAG-G-T-TGTAG-GTGT-GGTA----GGCT-A-G-G-CTAGAT-AATTT------T-T-TGGGGGGGGGtaaattgttatttttgttggtatggtgtaaaaaggaaataacaccaggccataatacgacaaacaaggtctaggacgtatcaaagtggttcattcccttattggcagatatattgataaacttctaaacgttttttaacct
gi|12 : ca-TCG-AAACG--TTT--TC---ACCT-tacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaactcgaaacgttttcacct
gi|13 : caaaaaataaataaatggttgctttccccaaatccgagccctatcaggttgtaggtgtggtaggctaggctagataattttttgggggggggtacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaac-A-TGCTGA-TTA-CAAAAAAGCG---CTTTT-GA-AGAAAAGCGA---T-C-----TTT--T-TCATATTTGACTCC---TCCCTTTCAT-TGCGA--G-CACCA-CT---T---ATTTGATTTC-G-----ATTTTAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAATGAA---AAA-TTCTTC-CGG----TTGTAG--CGA-TT---TT-TCGG---G-TTCCGGTCAGGA
gi|14 : ataaactcacgttttcggaaaggcctataacatag-TTG-AAACG--TTT--TC---ACCT-AATGCTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCCAGAAGTTT--C-TTGTATTGGACTCC---TCCCTTTCAT-TG-GA--G-CACTA-CT---TTAAA--AGATTTC-A-----A-TAAAAAAA------AAAA
gi|15 : aacaccagcataacaggacaccaaggtctagggcatatcatgttcatttcccttatggcagatatattaaataaaac-TCG-AAACG--TTT--TC---ACTT-A-TGCCGA-TTA-CAAAG--GTG---C-TTT-AA-AGAAAAGTGG---TCC-----TTT--T-TCGTATTTGACTCC---TCCCTTTCAT-AG-GA--G-CACCA-AT---T---T--GGATTTC-A-----A--TAAAAAA------a
gi|17 : -TG--G-GTGTGAGTA----GG-T-A-G-G-TAAAAT-ATTTTA---------------------------------GGGGGCACAAGGACTTGTCACGAA-CTTATTGTCTT-----ATTttc
gi|18 : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-A-CCGCGGA-CCCTATCAG-GTT-TG--G-GTGTGGGTA----G
gi|19 : gggcCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CT---GA-CCCTAT
gi|2 : gaggcAAAAT-AAATAACTGTTT-G-TTTCC-CCAA-C-C-TG---GA-CCCTATCAG-A-T-TG--TTGTGTGAGTA----GG-C-A-GAG-TAAAAT-ATTTTT-----TAT-TGGGGGGAGGTGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-----NNNNNNNNNNNNNNNN-N--NNNNAATACAGATACTATAGAGGGTCAA------------TATTTT------------CG-TG-TACAAGCCC-TG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTC-GAAAA--GCG---C-TTT-GA---AAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCT---CGCCTTTC---TG-AA--------A-AT---T---T--TGCTTTT-ATTTATA-TTGCAATC------ATAATTGGTGCTCCA--C-CAATTATGATT--G-CAAT--AAATAAA-T----------------CA----AATTT---TT---GG---G-T--CAGTCGAGATT-CGGGAAACACCAACAA---TATTTTATTTT-GGCCTtgg
gi|20 : ggccCAAAAAT-AAATAATTGTCT-G-TTTCT-CCAA-A-C-CC---Ga
gi|21 : cattgggcTATTT-G-TTTTC-CCAA-A-C-CC---GA-CCCTATCAG-
gi|3 : atataCAAAAGT-AAATAAATGTTT-G-TTTCC-TCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGAGGGGAGGGGGGGGGGGGGGGGGAAGGCACAGGGACTCATCACAAA-CTTTTTGTCTT-----GTTATTTGACAC---C-G--T-------------CTAT------TCTA------------TATTTA------------CA-CG-TG--AGTCCCTG----TGAGT-------CA-TCA-AAACA--TTT--TC---ACCA-A-TACCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TTC-----TTT--C-TCGTATTTGACTCA---TCCCTTTCATAGG-GA--G-CACCA-AT---T---A--TGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--T---AAA-TTCTTC-CGG----TCGCGC--CGATTT---TT-TCGG---G-T--TGGTCGGGATT-GGGGAAACA--AACAA---TATTGTATTTTAGGCCT
gi|4 : CAAAAAT-AAATAATTGTTTTG-TT----CCAT-A-C-C----GA-ACTTATCAG-G-T-TGT-G-ATGT----A----GG-T-A-G-G-TAAAATGATGTTA---------TGGGGGGGTGGGGGAGGGGGGGG
gi|4 : ggcACT--TTA--TC---ACCT-A-TGCTGA-TT--CAAAA--ACG---C-TTT-GA-A-AAAAGCGG---TCC-----TTT--C---ATATTTGATTCC---TCCCTT-CAT-TG-AG--C-CACCA-CT---T---A--GGATTTT-G-----A-TTAAAAAAAAAAAAAAAAAA-----T-CA--CACAA----AATTG-GCCAAT--A---AAA-GTCTTC-CGT----GCGCAG--TGATTT---taaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgactttatcacctatgctgattcaaaaacgctttgaaaaaagcggtcctttcatatttgattcctcccttcattgagccaccacttaggattttgattaaaaaaaaaaaaaaaaaatcacacaaaattggccaataaaagtcttccgtgcgcagtgattt
gi|5 : ggccaaaaataaataattgttttgttccataccgaacttatcaggttgtgatgtaggtaggtaaaatgatgttatgggggggtgggggaggggggggtaaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-AAC-CC---GA-CCCTATCAGAG-T-TG--G-TTGGGTATA----GG-TTA-G-GATAAAAT-ATTTTA-----T-T---------GGGGGGGGGAGGGGGGGAGGACACAAGA--TTGTC-CAGAGCTACTTGTCTTTAATTGTTATTTGACACCGTCTGATT-------------CTATA-----TTTACAAATAGCAGAATATTTCGTTGATGATGCTCG-TGATG--AGCCCATG----TGAGT-------CA-TGG-AAACG--TTT--TC---ACCT-A-TGCCAA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCATTCCAT-AG-GA--G-CACCA-AT---T---A--GGATTTC-A-----A--TAAAAAA------AAAA-T-----TCCA--CA
gi|6 : ggggcCAAAAATTACATAAT-GTTT-G-TTTCCGCCAA-AACGCC---GA-CCCTATCAG-G-T-CG--G----TGGGGA----GG-T-AAG-G-TAAAAT-ATTTTA-----T-TATGGGGGGGAGGGGGGGG
gi|6 : gc-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTA-CAAAA--GCG---C--TT-GA-AGAAAAGCGG---TCC-----TTT--CTTCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CAttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaactcgaaacgttttcacctatgctgattacaaaagcgcttgaagaaaagcggtcctttcttcgtatttgactcctctctttcattggagca
gi|7 : gccaaaaattacataatgtttgtttccgccaaaacgccgaccctatcaggtcggtggggaggtaaggtaaaatattttattatgggggggaggggggggttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaacCAAACAT-TAATAATTGTTT-G-TTTCC-CCAA-A-C-T----GA-CC-TATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-CAAAAT-ATTTTATAATTT-T-TGGGGGGGGTGG
gi|7 : gc-TCA-AAAC---TTT--TC---ACAT-A-TGCTGA-T-----------------------A-ATAAAAGTGG---------------------------ACTCC---TCCCTTTCAT-TG-GA--G-CACCAGTT---T---A--GG---------------------A------AAAATT-----T-CA--CACAA----AATTG-G-CAAT--A---AAA-taaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccctcaaaacttttcacatatgctgataataaaagtggactcctccctttcattggagcaccagtttaggaaaaatttcacacaaaattggcaataaaaat
gi|8 : gccaaacattaataattgtttgtttccccaaactgacctatcaggttgggtgtgggtaggtaggcaaaatattttataatttttggggggggtggtaaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccc-TCG-AAACA--TTTATTC---ACCT-A-TGCTGATTTACCAAAA--Gat
gi|8 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaacTCT---CCCCCTTCAT-TG-GA--G-CACCA-CT---T---A--GGATTTC-A--------TAAAAAA------AAAGTTG----TCCA--C-CAA----AATTG-G-CAAT--A---AAT-ATCTTC-CAG----TCGCAG--TGATTT---TTGTCAG---GTT--CGGTCAGGATTAAGGGAAACA--AACAATATTTTTTTATTTTAGGCCggtctcccccttcattggagcaccacttaggatttcataaaaaaaaagttgtccaccaaaattggcaataaatatcttccagtcgcagtgatttttgtcaggttcggtcaggattaagggaaacaaacaatatttttttattttaggccccatatttaaatgttgtttattttattatacaggct
gi|9 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaactcgaaacatttattcacctatgctgatttaccaaaagggCAAAAAT-AAA--A--GTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----G-------------AAT-ATTTTATT---T-T-TGGGGGccatatttaaatgttgtttattttattatacaggct
gi|9 : agac-TCG-AAACG--TTT--TT---ACCT-A-TACTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCAG---TCC-----TTT--C-TCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CACCA-TT---T---A--GGATtaaattgttgatatatgtaaaaaggaaacaacaccagcataacgggacaccaaggttgtatcaagtgttcatttccctttatatggcagatatattaaataaaattcgaaacgtttttacctatactgattacaaaagcgctttgaagaaaagcagtcctttctcgtatttgactcctctctttcattggagcaccatttaggat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAATTTTGGTGGGTAAATTATTTTTTGTTGGTGTAAAAAGAAAATAACACCAGCATAATAAGACACCAAGGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 22222 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 3333333 11111111 111111 11111 1111 111111 1111 1111 111 111 11 11 22 111
lowQualScore : 3 2 2 2 2 5 2 5555 6 3 3 3 77 44 7777 4 4 4 4 4 4 99999999999 5 0 5 0 8 22 2 00000 9999999999999999999999999999999999999999999999999999999999999999999999999999 9 1111 2222222 3 3 444 44 555 2 3 3 6 3 44 555 3 3 3 0 555 88888 4444 3 555 3 3 44 3 77 555 555 44 3 99999999 000000 4 55555 1 66 1 0000 5 5 222222 5 6 4444 3333 111 88 444 8 11 6 00 99 777 44 3
lowQualScore : . . . . . . . .... . . . . .. .. .... . . . . . . ........... . . . . . .. . ..... ............................................................................ . .... ....... . . ... .. ... . . . . . .. ... . . . . ... ..... .... . ... . . .. . .. ... ... .. . ........ ...... . ..... . .. . .... . . ...... . . .... .... ... .. ... . .. . .. .. ... .. .
lowQualScore : 1 9 9 9 9 7 9 1111 2 3 6 3 99 55 7777 0 0 0 0 0 0 00000000000 8 8 8 8 0 00 2 00000 8888888888888888888888888888888888888888888888888888888888888888888888888888 2 2222 5555555 6 3 444 22 444 9 1 7 2 1 22 888 3 3 3 1 888 33333 8888 2 444 1 1 22 1 77 888 888 66 6 11111111 555555 9 66666 1 11 9 6666 0 0 666666 7 7 2222 8888 777 88 000 0 00 4 88 00 555 22 2
consensus : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACA-CAACAA---TATTTTATTTTAGGCCT
Reference ( family-4969 ) : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACA-CAACAA---TNTTTTATTTTAGGCCT
gi|1 : AAAGT-AA-TAATTGTTT-G-TTTCC-CCAACA-C-CC----A-CTCTA-CAG-G-T-TG--G-
gi|1 : ggccatGG-CTCATTGT--T-----AATATTTTACACCGTT-A--T-------------TT--------TCTA------------GATTTA------------CAACA-TA--TATCTATGGTCTTGAATATAGATTCAATCGGAAACT--TTT--TCTCTCCCT-A-TGCCGAATTA-CAAAA--AC------TTT-AAGAGAAAAGTGG-----C-----TT------CGTATT-GACTCCATACCACTTTCAT-AG-GATCG-CACCA-ATGATT---A--GGATTTCCA-----A-TGAAAACA------AAAAAT-----TCCA--CACAA----ACTTGAG-CTAT--A---AGATTTCTTTACGGGGAATTACAGTATAATTTTGATT-TCGGGAAG-T--CGGTC-AGATT-AGGAAGATA-TAACAA---TA-TTCATTTTAGGCCactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaatggctcattgttaatattttacaccgttattttctagatttacaacatatatctatggtcttgaatatagattcaatcggaaactttttctctccctatgccgaattacaaaaactttaagagaaaagtggcttcgtattgactccataccactttcataggatcgcaccaatgattaggatttccaatgaaaacaaaaaattccacacaaacttgagctataagatttctttacggggaattacagtataattttgatttcgggaagtcggtcagattaggaagatataacaatattcattttaggcc
gi|10 : ggccataaagtaataattgtttgtttccccaacacccactctacaggttggactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaat-AAATGAATTA--TC---ACCTTA-TGT-GA-TTA-CCAAA--ACGTCGC-TTTAGA-AGCAAAAAGGCTTTCC-----TTTATC-TCGTATT-GA-TCC---TCCC-TTCAT-TT-GA--GTCACCACGT---G---A--GGATTTC-A-----A--TAAAAAG------AAA--T-----TCTAATCACAA----AACTG-G-C
gi|11 : gggtgggttaaattgttttttgttggtatgtgtaaaaaggaaataacaccagcattatataaataggacaccaaggtcaagggcgtatcaagtgttcatttcccttaattatggcagatatattaaattaaacttCAAAAAT-AAATAATTGTTT------CC-CCAA-A-C-CC---AAACCCTATCAG-G-TATG--G-GTGTGGGTAAGTAGG-T-A-G-G-TAAAAT-ATCTT------------GGGGGGGGGGGGGGGG
gi|12 : gcAAAAAT-AAATAAATGGTT-GCTTTCC-CCAA-A-T-CC---GAGCCCTATCAG-G-T-TGTAG-GTGT-GGTA----GGCT-A-G-G-CTAGAT-AATTT------T-T-TGGGGGGGGGtaaattgttatttttgttggtatggtgtaaaaaggaaataacaccaggccataatacgacaaacaaggtctaggacgtatcaaagtggttcattcccttattggcagatatattgataaacttctaaacgttttttaacct
gi|12 : ca-TCG-AAACG--TTT--TC---ACCT-tacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaactcgaaacgttttcacct
gi|13 : caaaaaataaataaatggttgctttccccaaatccgagccctatcaggttgtaggtgtggtaggctaggctagataattttttgggggggggtacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaac-A-TGCTGA-TTA-CAAAAAAGCG---CTTTT-GA-AGAAAAGCGA---T-C-----TTT--T-TCATATTTGACTCC---TCCCTTTCAT-TGCGA--G-CACCA-CT---T---ATTTGATTTC-G-----ATTTTAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAATGAA---AAA-TTCTTC-CGG----TTGTAG--CGA-TT---TT-TCGG---G-TTCCGGTCAGGA
gi|14 : ataaactcacgttttcggaaaggcctataacatag-TTG-AAACG--TTT--TC---ACCT-AATGCTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCCAGAAGTTT--C-TTGTATTGGACTCC---TCCCTTTCAT-TG-GA--G-CACTA-CT---TTAAA--AGATTTC-A-----A-TAAAAAAA------AAAA
gi|15 : aacaccagcataacaggacaccaaggtctagggcatatcatgttcatttcccttatggcagatatattaaataaaac-TCG-AAACG--TTT--TC---ACTT-A-TGCCGA-TTA-CAAAG--GTG---C-TTT-AA-AGAAAAGTGG---TCC-----TTT--T-TCGTATTTGACTCC---TCCCTTTCAT-AG-GA--G-CACCA-AT---T---T--GGATTTC-A-----A--TAAAAAA------a
gi|17 : -TG--G-GTGTGAGTA----GG-T-A-G-G-TAAAAT-ATTTTA---------------------------------GGGGGCACAAGGACTTGTCACGAA-CTTATTGTCTT-----ATTttc
gi|18 : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-A-CCGCGGA-CCCTATCAG-GTT-TG--G-GTGTGGGTA----G
gi|19 : gggcCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CT---GA-CCCTAT
gi|2 : gaggcAAAAT-AAATAACTGTTT-G-TTTCC-CCAA-C-C-TG---GA-CCCTATCAG-A-T-TG--TTGTGTGAGTA----GG-C-A-GAG-TAAAAT-ATTTTT-----TAT-TGGGGGGAGGTGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-----NNNNNNNNNNNNNNNN-N--NNNNAATACAGATACTATAGAGGGTCAA------------TATTTT------------CG-TG-TACAAGCCC-TG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTC-GAAAA--GCG---C-TTT-GA---AAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCT---CGCCTTTC---TG-AA--------A-AT---T---T--TGCTTTT-ATTTATA-TTGCAATC------ATAATTGGTGCTCCA--C-CAATTATGATT--G-CAAT--AAATAAA-T----------------CA----AATTT---TT---GG---G-T--CAGTCGAGATT-CGGGAAACACCAACAA---TATTTTATTTT-GGCCTtgg
gi|20 : ggccCAAAAAT-AAATAATTGTCT-G-TTTCT-CCAA-A-C-CC---Ga
gi|21 : cattgggcTATTT-G-TTTTC-CCAA-A-C-CC---GA-CCCTATCAG-
gi|3 : atataCAAAAGT-AAATAAATGTTT-G-TTTCC-TCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGAGGGGAGGGGGGGGGGGGGGGGGAAGGCACAGGGACTCATCACAAA-CTTTTTGTCTT-----GTTATTTGACAC---C-G--T-------------CTAT------TCTA------------TATTTA------------CA-CG-TG--AGTCCCTG----TGAGT-------CA-TCA-AAACA--TTT--TC---ACCA-A-TACCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TTC-----TTT--C-TCGTATTTGACTCA---TCCCTTTCATAGG-GA--G-CACCA-AT---T---A--TGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--T---AAA-TTCTTC-CGG----TCGCGC--CGATTT---TT-TCGG---G-T--TGGTCGGGATT-GGGGAAACA--AACAA---TATTGTATTTTAGGCCT
gi|4 : CAAAAAT-AAATAATTGTTTTG-TT----CCAT-A-C-C----GA-ACTTATCAG-G-T-TGT-G-ATGT----A----GG-T-A-G-G-TAAAATGATGTTA---------TGGGGGGGTGGGGGAGGGGGGGG
gi|4 : ggcACT--TTA--TC---ACCT-A-TGCTGA-TT--CAAAA--ACG---C-TTT-GA-A-AAAAGCGG---TCC-----TTT--C---ATATTTGATTCC---TCCCTT-CAT-TG-AG--C-CACCA-CT---T---A--GGATTTT-G-----A-TTAAAAAAAAAAAAAAAAAA-----T-CA--CACAA----AATTG-GCCAAT--A---AAA-GTCTTC-CGT----GCGCAG--TGATTT---taaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgactttatcacctatgctgattcaaaaacgctttgaaaaaagcggtcctttcatatttgattcctcccttcattgagccaccacttaggattttgattaaaaaaaaaaaaaaaaaatcacacaaaattggccaataaaagtcttccgtgcgcagtgattt
gi|5 : ggccaaaaataaataattgttttgttccataccgaacttatcaggttgtgatgtaggtaggtaaaatgatgttatgggggggtgggggaggggggggtaaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-AAC-CC---GA-CCCTATCAGAG-T-TG--G-TTGGGTATA----GG-TTA-G-GATAAAAT-ATTTTA-----T-T---------GGGGGGGGGAGGGGGGGAGGACACAAGA--TTGTC-CAGAGCTACTTGTCTTTAATTGTTATTTGACACCGTCTGATT-------------CTATA-----TTTACAAATAGCAGAATATTTCGTTGATGATGCTCG-TGATG--AGCCCATG----TGAGT-------CA-TGG-AAACG--TTT--TC---ACCT-A-TGCCAA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCATTCCAT-AG-GA--G-CACCA-AT---T---A--GGATTTC-A-----A--TAAAAAA------AAAA-T-----TCCA--CA
gi|6 : ggggcCAAAAATTACATAAT-GTTT-G-TTTCCGCCAA-AACGCC---GA-CCCTATCAG-G-T-CG--G----TGGGGA----GG-T-AAG-G-TAAAAT-ATTTTA-----T-TATGGGGGGGAGGGGGGGG
gi|6 : gc-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTA-CAAAA--GCG---C--TT-GA-AGAAAAGCGG---TCC-----TTT--CTTCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CAttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaactcgaaacgttttcacctatgctgattacaaaagcgcttgaagaaaagcggtcctttcttcgtatttgactcctctctttcattggagca
gi|7 : gccaaaaattacataatgtttgtttccgccaaaacgccgaccctatcaggtcggtggggaggtaaggtaaaatattttattatgggggggaggggggggttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaacCAAACAT-TAATAATTGTTT-G-TTTCC-CCAA-A-C-T----GA-CC-TATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-CAAAAT-ATTTTATAATTT-T-TGGGGGGGGTGG
gi|7 : gc-TCA-AAAC---TTT--TC---ACAT-A-TGCTGA-T-----------------------A-ATAAAAGTGG---------------------------ACTCC---TCCCTTTCAT-TG-GA--G-CACCAGTT---T---A--GG---------------------A------AAAATT-----T-CA--CACAA----AATTG-G-CAAT--A---AAA-taaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccctcaaaacttttcacatatgctgataataaaagtggactcctccctttcattggagcaccagtttaggaaaaatttcacacaaaattggcaataaaaat
gi|8 : gccaaacattaataattgtttgtttccccaaactgacctatcaggttgggtgtgggtaggtaggcaaaatattttataatttttggggggggtggtaaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccc-TCG-AAACA--TTTATTC---ACCT-A-TGCTGATTTACCAAAA--Gat
gi|8 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaacTCT---CCCCCTTCAT-TG-GA--G-CACCA-CT---T---A--GGATTTC-A--------TAAAAAA------AAAGTTG----TCCA--C-CAA----AATTG-G-CAAT--A---AAT-ATCTTC-CAG----TCGCAG--TGATTT---TTGTCAG---GTT--CGGTCAGGATTAAGGGAAACA--AACAATATTTTTTTATTTTAGGCCggtctcccccttcattggagcaccacttaggatttcataaaaaaaaagttgtccaccaaaattggcaataaatatcttccagtcgcagtgatttttgtcaggttcggtcaggattaagggaaacaaacaatatttttttattttaggccccatatttaaatgttgtttattttattatacaggct
gi|9 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaactcgaaacatttattcacctatgctgatttaccaaaagggCAAAAAT-AAA--A--GTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----G-------------AAT-ATTTTATT---T-T-TGGGGGccatatttaaatgttgtttattttattatacaggct
gi|9 : agac-TCG-AAACG--TTT--TT---ACCT-A-TACTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCAG---TCC-----TTT--C-TCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CACCA-TT---T---A--GGATtaaattgttgatatatgtaaaaaggaaacaacaccagcataacgggacaccaaggttgtatcaagtgttcatttccctttatatggcagatatattaaataaaattcgaaacgtttttacctatactgattacaaaagcgctttgaagaaaagcagtcctttctcgtatttgactcctctctttcattggagcaccatttaggat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAATTTTGGTGGGTAAATTATTTTTTGTTGGTGTAAAAAGAAAATAACACCAGCATAATAAGACACCAAGGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 22222 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 3333333 11111111 111111 11111 1111 111111 1111 1111 111 111 11 11 22 2222
lowQualScore : 3 2 2 2 2 5 2 5555 6 3 3 3 77 44 7777 4 4 4 4 4 4 99999999999 5 0 5 0 8 22 2 00000 9999999999999999999999999999999999999999999999999999999999999999999999999999 9 1111 2222222 3 3 444 44 555 2 3 3 6 3 44 555 3 3 3 0 555 88888 4444 3 555 3 3 44 3 77 555 555 44 3 99999999 000000 4 55555 1 66 1 0000 5 5 222222 5 6 4444 3333 111 88 444 8 11 6 00 99 0000 3
lowQualScore : . . . . . . . .... . . . . .. .. .... . . . . . . ........... . . . . . .. . ..... ............................................................................ . .... ....... . . ... .. ... . . . . . .. ... . . . . ... ..... .... . ... . . .. . .. ... ... .. . ........ ...... . ..... . .. . .... . . ...... . . .... .... ... .. ... . .. . .. .. .... .
lowQualScore : 1 9 9 9 9 7 9 1111 2 3 6 3 99 55 7777 0 0 0 0 0 0 00000000000 8 8 8 8 0 00 2 00000 8888888888888888888888888888888888888888888888888888888888888888888888888888 2 2222 5555555 6 3 444 22 444 9 1 7 2 1 22 888 3 3 3 1 888 33333 8888 2 444 1 1 22 1 77 888 888 66 6 11111111 555555 9 66666 1 11 9 6666 0 0 666666 7 7 2222 8888 777 88 000 0 00 4 88 00 8888 2
consensus : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACA-CAACAATA---TTTTATTTTAGGCCT
Reference ( family-4969 ) : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACA-CAACAATA---TTTTATTTTAGGCCT
gi|1 : AAAGT-AA-TAATTGTTT-G-TTTCC-CCAACA-C-CC----A-CTCTA-CAG-G-T-TG--G-
gi|1 : ggccatGG-CTCATTGT--T-----AATATTTTACACCGTT-A--T-------------TT--------TCTA------------GATTTA------------CAACA-TA--TATCTATGGTCTTGAATATAGATTCAATCGGAAACT--TTT--TCTCTCCCT-A-TGCCGAATTA-CAAAA--AC------TTT-AAGAGAAAAGTGG-----C-----TT------CGTATT-GACTCCATACCACTTTCAT-AG-GATCG-CACCA-ATGATT---A--GGATTTCCA-----A-TGAAAACA------AAAAAT-----TCCA--CACAA----ACTTGAG-CTAT--A---AGATTTCTTTACGGGGAATTACAGTATAATTTTGATT-TCGGGAAG-T--CGGTC-AGATT-AGGAAGATA-TAACAATA----TTCATTTTAGGCCactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaatggctcattgttaatattttacaccgttattttctagatttacaacatatatctatggtcttgaatatagattcaatcggaaactttttctctccctatgccgaattacaaaaactttaagagaaaagtggcttcgtattgactccataccactttcataggatcgcaccaatgattaggatttccaatgaaaacaaaaaattccacacaaacttgagctataagatttctttacggggaattacagtataattttgatttcgggaagtcggtcagattaggaagatataacaatattcattttaggcc
gi|10 : ggccataaagtaataattgtttgtttccccaacacccactctacaggttggactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaat-AAATGAATTA--TC---ACCTTA-TGT-GA-TTA-CCAAA--ACGTCGC-TTTAGA-AGCAAAAAGGCTTTCC-----TTTATC-TCGTATT-GA-TCC---TCCC-TTCAT-TT-GA--GTCACCACGT---G---A--GGATTTC-A-----A--TAAAAAG------AAA--T-----TCTAATCACAA----AACTG-G-C
gi|11 : gggtgggttaaattgttttttgttggtatgtgtaaaaaggaaataacaccagcattatataaataggacaccaaggtcaagggcgtatcaagtgttcatttcccttaattatggcagatatattaaattaaacttCAAAAAT-AAATAATTGTTT------CC-CCAA-A-C-CC---AAACCCTATCAG-G-TATG--G-GTGTGGGTAAGTAGG-T-A-G-G-TAAAAT-ATCTT------------GGGGGGGGGGGGGGGG
gi|12 : gcAAAAAT-AAATAAATGGTT-GCTTTCC-CCAA-A-T-CC---GAGCCCTATCAG-G-T-TGTAG-GTGT-GGTA----GGCT-A-G-G-CTAGAT-AATTT------T-T-TGGGGGGGGGtaaattgttatttttgttggtatggtgtaaaaaggaaataacaccaggccataatacgacaaacaaggtctaggacgtatcaaagtggttcattcccttattggcagatatattgataaacttctaaacgttttttaacct
gi|12 : ca-TCG-AAACG--TTT--TC---ACCT-tacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaactcgaaacgttttcacct
gi|13 : caaaaaataaataaatggttgctttccccaaatccgagccctatcaggttgtaggtgtggtaggctaggctagataattttttgggggggggtacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaac-A-TGCTGA-TTA-CAAAAAAGCG---CTTTT-GA-AGAAAAGCGA---T-C-----TTT--T-TCATATTTGACTCC---TCCCTTTCAT-TGCGA--G-CACCA-CT---T---ATTTGATTTC-G-----ATTTTAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAATGAA---AAA-TTCTTC-CGG----TTGTAG--CGA-TT---TT-TCGG---G-TTCCGGTCAGGA
gi|14 : ataaactcacgttttcggaaaggcctataacatag-TTG-AAACG--TTT--TC---ACCT-AATGCTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCCAGAAGTTT--C-TTGTATTGGACTCC---TCCCTTTCAT-TG-GA--G-CACTA-CT---TTAAA--AGATTTC-A-----A-TAAAAAAA------AAAA
gi|15 : aacaccagcataacaggacaccaaggtctagggcatatcatgttcatttcccttatggcagatatattaaataaaac-TCG-AAACG--TTT--TC---ACTT-A-TGCCGA-TTA-CAAAG--GTG---C-TTT-AA-AGAAAAGTGG---TCC-----TTT--T-TCGTATTTGACTCC---TCCCTTTCAT-AG-GA--G-CACCA-AT---T---T--GGATTTC-A-----A--TAAAAAA------a
gi|17 : -TG--G-GTGTGAGTA----GG-T-A-G-G-TAAAAT-ATTTTA---------------------------------GGGGGCACAAGGACTTGTCACGAA-CTTATTGTCTT-----ATTttc
gi|18 : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-A-CCGCGGA-CCCTATCAG-GTT-TG--G-GTGTGGGTA----G
gi|19 : gggcCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CT---GA-CCCTAT
gi|2 : gaggcAAAAT-AAATAACTGTTT-G-TTTCC-CCAA-C-C-TG---GA-CCCTATCAG-A-T-TG--TTGTGTGAGTA----GG-C-A-GAG-TAAAAT-ATTTTT-----TAT-TGGGGGGAGGTGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-----NNNNNNNNNNNNNNNN-N--NNNNAATACAGATACTATAGAGGGTCAA------------TATTTT------------CG-TG-TACAAGCCC-TG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTC-GAAAA--GCG---C-TTT-GA---AAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCT---CGCCTTTC---TG-AA--------A-AT---T---T--TGCTTTT-ATTTATA-TTGCAATC------ATAATTGGTGCTCCA--C-CAATTATGATT--G-CAAT--AAATAAA-T----------------CA----AATTT---TT---GG---G-T--CAGTCGAGATT-CGGGAAACACCAACAATA---TTTTATTTT-GGCCTtgg
gi|20 : ggccCAAAAAT-AAATAATTGTCT-G-TTTCT-CCAA-A-C-CC---Ga
gi|21 : cattgggcTATTT-G-TTTTC-CCAA-A-C-CC---GA-CCCTATCAG-
gi|3 : atataCAAAAGT-AAATAAATGTTT-G-TTTCC-TCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGAGGGGAGGGGGGGGGGGGGGGGGAAGGCACAGGGACTCATCACAAA-CTTTTTGTCTT-----GTTATTTGACAC---C-G--T-------------CTAT------TCTA------------TATTTA------------CA-CG-TG--AGTCCCTG----TGAGT-------CA-TCA-AAACA--TTT--TC---ACCA-A-TACCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TTC-----TTT--C-TCGTATTTGACTCA---TCCCTTTCATAGG-GA--G-CACCA-AT---T---A--TGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--T---AAA-TTCTTC-CGG----TCGCGC--CGATTT---TT-TCGG---G-T--TGGTCGGGATT-GGGGAAACA--AACAATA---TTGTATTTTAGGCCT
gi|4 : CAAAAAT-AAATAATTGTTTTG-TT----CCAT-A-C-C----GA-ACTTATCAG-G-T-TGT-G-ATGT----A----GG-T-A-G-G-TAAAATGATGTTA---------TGGGGGGGTGGGGGAGGGGGGGG
gi|4 : ggcACT--TTA--TC---ACCT-A-TGCTGA-TT--CAAAA--ACG---C-TTT-GA-A-AAAAGCGG---TCC-----TTT--C---ATATTTGATTCC---TCCCTT-CAT-TG-AG--C-CACCA-CT---T---A--GGATTTT-G-----A-TTAAAAAAAAAAAAAAAAAA-----T-CA--CACAA----AATTG-GCCAAT--A---AAA-GTCTTC-CGT----GCGCAG--TGATTT---taaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgactttatcacctatgctgattcaaaaacgctttgaaaaaagcggtcctttcatatttgattcctcccttcattgagccaccacttaggattttgattaaaaaaaaaaaaaaaaaatcacacaaaattggccaataaaagtcttccgtgcgcagtgattt
gi|5 : ggccaaaaataaataattgttttgttccataccgaacttatcaggttgtgatgtaggtaggtaaaatgatgttatgggggggtgggggaggggggggtaaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-AAC-CC---GA-CCCTATCAGAG-T-TG--G-TTGGGTATA----GG-TTA-G-GATAAAAT-ATTTTA-----T-T---------GGGGGGGGGAGGGGGGGAGGACACAAGA--TTGTC-CAGAGCTACTTGTCTTTAATTGTTATTTGACACCGTCTGATT-------------CTATA-----TTTACAAATAGCAGAATATTTCGTTGATGATGCTCG-TGATG--AGCCCATG----TGAGT-------CA-TGG-AAACG--TTT--TC---ACCT-A-TGCCAA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCATTCCAT-AG-GA--G-CACCA-AT---T---A--GGATTTC-A-----A--TAAAAAA------AAAA-T-----TCCA--CA
gi|6 : ggggcCAAAAATTACATAAT-GTTT-G-TTTCCGCCAA-AACGCC---GA-CCCTATCAG-G-T-CG--G----TGGGGA----GG-T-AAG-G-TAAAAT-ATTTTA-----T-TATGGGGGGGAGGGGGGGG
gi|6 : gc-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTA-CAAAA--GCG---C--TT-GA-AGAAAAGCGG---TCC-----TTT--CTTCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CAttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaactcgaaacgttttcacctatgctgattacaaaagcgcttgaagaaaagcggtcctttcttcgtatttgactcctctctttcattggagca
gi|7 : gccaaaaattacataatgtttgtttccgccaaaacgccgaccctatcaggtcggtggggaggtaaggtaaaatattttattatgggggggaggggggggttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaacCAAACAT-TAATAATTGTTT-G-TTTCC-CCAA-A-C-T----GA-CC-TATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-CAAAAT-ATTTTATAATTT-T-TGGGGGGGGTGG
gi|7 : gc-TCA-AAAC---TTT--TC---ACAT-A-TGCTGA-T-----------------------A-ATAAAAGTGG---------------------------ACTCC---TCCCTTTCAT-TG-GA--G-CACCAGTT---T---A--GG---------------------A------AAAATT-----T-CA--CACAA----AATTG-G-CAAT--A---AAA-taaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccctcaaaacttttcacatatgctgataataaaagtggactcctccctttcattggagcaccagtttaggaaaaatttcacacaaaattggcaataaaaat
gi|8 : gccaaacattaataattgtttgtttccccaaactgacctatcaggttgggtgtgggtaggtaggcaaaatattttataatttttggggggggtggtaaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccc-TCG-AAACA--TTTATTC---ACCT-A-TGCTGATTTACCAAAA--Gat
gi|8 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaacTCT---CCCCCTTCAT-TG-GA--G-CACCA-CT---T---A--GGATTTC-A--------TAAAAAA------AAAGTTG----TCCA--C-CAA----AATTG-G-CAAT--A---AAT-ATCTTC-CAG----TCGCAG--TGATTT---TTGTCAG---GTT--CGGTCAGGATTAAGGGAAACA--AACAATATTTTTTTATTTTAGGCCggtctcccccttcattggagcaccacttaggatttcataaaaaaaaagttgtccaccaaaattggcaataaatatcttccagtcgcagtgatttttgtcaggttcggtcaggattaagggaaacaaacaatatttttttattttaggccccatatttaaatgttgtttattttattatacaggct
gi|9 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaactcgaaacatttattcacctatgctgatttaccaaaagggCAAAAAT-AAA--A--GTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----G-------------AAT-ATTTTATT---T-T-TGGGGGccatatttaaatgttgtttattttattatacaggct
gi|9 : agac-TCG-AAACG--TTT--TT---ACCT-A-TACTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCAG---TCC-----TTT--C-TCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CACCA-TT---T---A--GGATtaaattgttgatatatgtaaaaaggaaacaacaccagcataacgggacaccaaggttgtatcaagtgttcatttccctttatatggcagatatattaaataaaattcgaaacgtttttacctatactgattacaaaagcgctttgaagaaaagcagtcctttctcgtatttgactcctctctttcattggagcaccatttaggat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAATTTTGGTGGGTAAATTATTTTTTGTTGGTGTAAAAAGAAAATAACACCAGCATAATAAGACACCAAGGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 22222 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 3333333 11111111 111111 11111 1111 111111 1111 1111 111 111 11 11 22 2222
lowQualScore : 3 2 2 2 2 5 2 5555 6 3 3 3 77 44 7777 4 4 4 4 4 4 99999999999 5 0 5 0 8 22 2 00000 9999999999999999999999999999999999999999999999999999999999999999999999999999 9 1111 2222222 3 3 444 44 555 2 3 3 6 3 44 555 3 3 3 0 555 88888 4444 3 555 3 3 44 3 77 555 555 44 3 99999999 000000 4 55555 1 66 1 0000 5 5 222222 5 6 4444 3333 111 88 444 8 11 6 00 99 0000 3
lowQualScore : . . . . . . . .... . . . . .. .. .... . . . . . . ........... . . . . . .. . ..... ............................................................................ . .... ....... . . ... .. ... . . . . . .. ... . . . . ... ..... .... . ... . . .. . .. ... ... .. . ........ ...... . ..... . .. . .... . . ...... . . .... .... ... .. ... . .. . .. .. .... .
lowQualScore : 1 9 9 9 9 7 9 1111 2 3 6 3 99 55 7777 0 0 0 0 0 0 00000000000 8 8 8 8 0 00 2 00000 8888888888888888888888888888888888888888888888888888888888888888888888888888 2 2222 5555555 6 3 444 22 444 9 1 7 2 1 22 888 3 3 3 1 888 33333 8888 2 444 1 1 22 1 77 888 888 66 6 11111111 555555 9 66666 1 11 9 6666 0 0 666666 7 7 2222 8888 777 88 000 0 00 4 88 00 8888 2
consensus : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACA-CAACAATA---TTTTATTTTAGGCCT
Reference ( family-4969 ) : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACA-CAACAATA---TTTTATTTTAGGCCT
gi|1 : AAAGT-AA-TAATTGTTT-G-TTTCC-CCAACA-C-CC----A-CTCTA-CAG-G-T-TG--G-
gi|1 : ggccatGG-CTCATTGT--T-----AATATTTTACACCGTT-A--T-------------TT--------TCTA------------GATTTA------------CAACA-TA--TATCTATGGTCTTGAATATAGATTCAATCGGAAACT--TTT--TCTCTCCCT-A-TGCCGAATTA-CAAAA--AC------TTT-AAGAGAAAAGTGG-----C-----TT------CGTATT-GACTCCATACCACTTTCAT-AG-GATCG-CACCA-ATGATT---A--GGATTTCCA-----A-TGAAAACA------AAAAAT-----TCCA--CACAA----ACTTGAG-CTAT--A---AGATTTCTTTACGGGGAATTACAGTATAATTTTGATT-TCGGGAAG-T--CGGTC-AGATT-AGGAAGATA-TAACAATA----TTCATTTTAGGCCactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaatggctcattgttaatattttacaccgttattttctagatttacaacatatatctatggtcttgaatatagattcaatcggaaactttttctctccctatgccgaattacaaaaactttaagagaaaagtggcttcgtattgactccataccactttcataggatcgcaccaatgattaggatttccaatgaaaacaaaaaattccacacaaacttgagctataagatttctttacggggaattacagtataattttgatttcgggaagtcggtcagattaggaagatataacaatattcattttaggcc
gi|10 : ggccataaagtaataattgtttgtttccccaacacccactctacaggttggactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaat-AAATGAATTA--TC---ACCTTA-TGT-GA-TTA-CCAAA--ACGTCGC-TTTAGA-AGCAAAAAGGCTTTCC-----TTTATC-TCGTATT-GA-TCC---TCCC-TTCAT-TT-GA--GTCACCACGT---G---A--GGATTTC-A-----A--TAAAAAG------AAA--T-----TCTAATCACAA----AACTG-G-C
gi|11 : gggtgggttaaattgttttttgttggtatgtgtaaaaaggaaataacaccagcattatataaataggacaccaaggtcaagggcgtatcaagtgttcatttcccttaattatggcagatatattaaattaaacttCAAAAAT-AAATAATTGTTT------CC-CCAA-A-C-CC---AAACCCTATCAG-G-TATG--G-GTGTGGGTAAGTAGG-T-A-G-G-TAAAAT-ATCTT------------GGGGGGGGGGGGGGGG
gi|12 : gcAAAAAT-AAATAAATGGTT-GCTTTCC-CCAA-A-T-CC---GAGCCCTATCAG-G-T-TGTAG-GTGT-GGTA----GGCT-A-G-G-CTAGAT-AATTT------T-T-TGGGGGGGGGtaaattgttatttttgttggtatggtgtaaaaaggaaataacaccaggccataatacgacaaacaaggtctaggacgtatcaaagtggttcattcccttattggcagatatattgataaacttctaaacgttttttaacct
gi|12 : ca-TCG-AAACG--TTT--TC---ACCT-tacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaactcgaaacgttttcacct
gi|13 : caaaaaataaataaatggttgctttccccaaatccgagccctatcaggttgtaggtgtggtaggctaggctagataattttttgggggggggtacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaac-A-TGCTGA-TTA-CAAAAAAGCG---CTTTT-GA-AGAAAAGCGA---T-C-----TTT--T-TCATATTTGACTCC---TCCCTTTCAT-TGCGA--G-CACCA-CT---T---ATTTGATTTC-G-----ATTTTAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAATGAA---AAA-TTCTTC-CGG----TTGTAG--CGA-TT---TT-TCGG---G-TTCCGGTCAGGA
gi|14 : ataaactcacgttttcggaaaggcctataacatag-TTG-AAACG--TTT--TC---ACCT-AATGCTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCCAGAAGTTT--C-TTGTATTGGACTCC---TCCCTTTCAT-TG-GA--G-CACTA-CT---TTAAA--AGATTTC-A-----A-TAAAAAAA------AAAA
gi|15 : aacaccagcataacaggacaccaaggtctagggcatatcatgttcatttcccttatggcagatatattaaataaaac-TCG-AAACG--TTT--TC---ACTT-A-TGCCGA-TTA-CAAAG--GTG---C-TTT-AA-AGAAAAGTGG---TCC-----TTT--T-TCGTATTTGACTCC---TCCCTTTCAT-AG-GA--G-CACCA-AT---T---T--GGATTTC-A-----A--TAAAAAA------a
gi|17 : -TG--G-GTGTGAGTA----GG-T-A-G-G-TAAAAT-ATTTTA---------------------------------GGGGGCACAAGGACTTGTCACGAA-CTTATTGTCTT-----ATTttc
gi|18 : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-A-CCGCGGA-CCCTATCAG-GTT-TG--G-GTGTGGGTA----G
gi|19 : gggcCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CT---GA-CCCTAT
gi|2 : gaggcAAAAT-AAATAACTGTTT-G-TTTCC-CCAA-C-C-TG---GA-CCCTATCAG-A-T-TG--TTGTGTGAGTA----GG-C-A-GAG-TAAAAT-ATTTTT-----TAT-TGGGGGGAGGTGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-----NNNNNNNNNNNNNNNN-N--NNNNAATACAGATACTATAGAGGGTCAA------------TATTTT------------CG-TG-TACAAGCCC-TG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTC-GAAAA--GCG---C-TTT-GA---AAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCT---CGCCTTTC---TG-AA--------A-AT---T---T--TGCTTTT-ATTTATA-TTGCAATC------ATAATTGGTGCTCCA--C-CAATTATGATT--G-CAAT--AAATAAA-T----------------CA----AATTT---TT---GG---G-T--CAGTCGAGATT-CGGGAAACACCAACAATA---TTTTATTTT-GGCCTtgg
gi|20 : ggccCAAAAAT-AAATAATTGTCT-G-TTTCT-CCAA-A-C-CC---Ga
gi|21 : cattgggcTATTT-G-TTTTC-CCAA-A-C-CC---GA-CCCTATCAG-
gi|3 : atataCAAAAGT-AAATAAATGTTT-G-TTTCC-TCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGAGGGGAGGGGGGGGGGGGGGGGGAAGGCACAGGGACTCATCACAAA-CTTTTTGTCTT-----GTTATTTGACAC---C-G--T-------------CTAT------TCTA------------TATTTA------------CA-CG-TG--AGTCCCTG----TGAGT-------CA-TCA-AAACA--TTT--TC---ACCA-A-TACCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TTC-----TTT--C-TCGTATTTGACTCA---TCCCTTTCATAGG-GA--G-CACCA-AT---T---A--TGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--T---AAA-TTCTTC-CGG----TCGCGC--CGATTT---TT-TCGG---G-T--TGGTCGGGATT-GGGGAAACA--AACAATA---TTGTATTTTAGGCCT
gi|4 : CAAAAAT-AAATAATTGTTTTG-TT----CCAT-A-C-C----GA-ACTTATCAG-G-T-TGT-G-ATGT----A----GG-T-A-G-G-TAAAATGATGTTA---------TGGGGGGGTGGGGGAGGGGGGGG
gi|4 : ggcACT--TTA--TC---ACCT-A-TGCTGA-TT--CAAAA--ACG---C-TTT-GA-A-AAAAGCGG---TCC-----TTT--C---ATATTTGATTCC---TCCCTT-CAT-TG-AG--C-CACCA-CT---T---A--GGATTTT-G-----A-TTAAAAAAAAAAAAAAAAAA-----T-CA--CACAA----AATTG-GCCAAT--A---AAA-GTCTTC-CGT----GCGCAG--TGATTT---taaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgactttatcacctatgctgattcaaaaacgctttgaaaaaagcggtcctttcatatttgattcctcccttcattgagccaccacttaggattttgattaaaaaaaaaaaaaaaaaatcacacaaaattggccaataaaagtcttccgtgcgcagtgattt
gi|5 : ggccaaaaataaataattgttttgttccataccgaacttatcaggttgtgatgtaggtaggtaaaatgatgttatgggggggtgggggaggggggggtaaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-AAC-CC---GA-CCCTATCAGAG-T-TG--G-TTGGGTATA----GG-TTA-G-GATAAAAT-ATTTTA-----T-T---------GGGGGGGGGAGGGGGGGAGGACACAAGA--TTGTC-CAGAGCTACTTGTCTTTAATTGTTATTTGACACCGTCTGATT-------------CTATA-----TTTACAAATAGCAGAATATTTCGTTGATGATGCTCG-TGATG--AGCCCATG----TGAGT-------CA-TGG-AAACG--TTT--TC---ACCT-A-TGCCAA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCATTCCAT-AG-GA--G-CACCA-AT---T---A--GGATTTC-A-----A--TAAAAAA------AAAA-T-----TCCA--CA
gi|6 : ggggcCAAAAATTACATAAT-GTTT-G-TTTCCGCCAA-AACGCC---GA-CCCTATCAG-G-T-CG--G----TGGGGA----GG-T-AAG-G-TAAAAT-ATTTTA-----T-TATGGGGGGGAGGGGGGGG
gi|6 : gc-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTA-CAAAA--GCG---C--TT-GA-AGAAAAGCGG---TCC-----TTT--CTTCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CAttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaactcgaaacgttttcacctatgctgattacaaaagcgcttgaagaaaagcggtcctttcttcgtatttgactcctctctttcattggagca
gi|7 : gccaaaaattacataatgtttgtttccgccaaaacgccgaccctatcaggtcggtggggaggtaaggtaaaatattttattatgggggggaggggggggttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaacCAAACAT-TAATAATTGTTT-G-TTTCC-CCAA-A-C-T----GA-CC-TATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-CAAAAT-ATTTTATAATTT-T-TGGGGGGGGTGG
gi|7 : gc-TCA-AAAC---TTT--TC---ACAT-A-TGCTGA-T-----------------------A-ATAAAAGTGG---------------------------ACTCC---TCCCTTTCAT-TG-GA--G-CACCAGTT---T---A--GG---------------------A------AAAATT-----T-CA--CACAA----AATTG-G-CAAT--A---AAA-taaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccctcaaaacttttcacatatgctgataataaaagtggactcctccctttcattggagcaccagtttaggaaaaatttcacacaaaattggcaataaaaat
gi|8 : gccaaacattaataattgtttgtttccccaaactgacctatcaggttgggtgtgggtaggtaggcaaaatattttataatttttggggggggtggtaaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccc-TCG-AAACA--TTTATTC---ACCT-A-TGCTGATTTACCAAAA--Gat
gi|8 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaacTCT---CCCCCTTCAT-TG-GA--G-CACCA-CT---T---A--GGATTTC-A--------TAAAAAA------AAAGTTG----TCCA--C-CAA----AATTG-G-CAAT--A---AAT-ATCTTC-CAG----TCGCAG--TGATTT---TTGTCAG---GTT--CGGTCAGGATTAAGGGAAACA--AACAATATTTTTTTATTTTAGGCCggtctcccccttcattggagcaccacttaggatttcataaaaaaaaagttgtccaccaaaattggcaataaatatcttccagtcgcagtgatttttgtcaggttcggtcaggattaagggaaacaaacaatatttttttattttaggccccatatttaaatgttgtttattttattatacaggct
gi|9 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaactcgaaacatttattcacctatgctgatttaccaaaagggCAAAAAT-AAA--A--GTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----G-------------AAT-ATTTTATT---T-T-TGGGGGccatatttaaatgttgtttattttattatacaggct
gi|9 : agac-TCG-AAACG--TTT--TT---ACCT-A-TACTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCAG---TCC-----TTT--C-TCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CACCA-TT---T---A--GGATtaaattgttgatatatgtaaaaaggaaacaacaccagcataacgggacaccaaggttgtatcaagtgttcatttccctttatatggcagatatattaaataaaattcgaaacgtttttacctatactgattacaaaagcgctttgaagaaaagcagtcctttctcgtatttgactcctctctttcattggagcaccatttaggat
blockSeqs : T T C G . A G CGCG A A T A TA TG . C T A A A G ATAATTTTT N N G TA C TAATT CGTCTGATTCTATATTTACAAATAGCAGAATATTTCGTTGATGATGCTCGTGATG C . . . . GAA AT . T A T T C AA TCG T A . CTT AGAAG ATC T . A C . T CG . TAA TT . TTTATAT AAAAAA T GGTGC C AT A TTAT . C AAAT . . . GC . GT . T TC A AA CC TTTT A
blockSeqs : . . . . . A . C G . . . T G . . . . . . . ATTTTT A A . NN N . NNNNNNNNNAATACAGATACTATAGAGGGTCAATATTTTCGTGTACA A . . . . G . . . . T . . . . . . . . . CT G . . . . . GT . . . . ATT . T G C . A . . . GAA . . . CC . T . . . G C . T A
blockSeqs : . . . . . . . C . . . . . G . . . . . . . TTATT . . . TT C . CGTCTATTCTATATTTACACGTG . . . . . G . . . . C . . . . . . . . . T T . . . . . C . . . . AT . T . C . A . . . T . . . GT . T . . . G G . T .
blockSeqs : . . . . . . . T . . . . . G . . . . . . . ATTAT . AC C . . . G . . . . T . . . . . . . . . C T . . . . . C . . . . AT . A . C . A . . . A . . . GT . . . . . A
blockSeqs : . . . . . . . G . . . . . A . . . . . . . ATTT . . G . . . . C . . . . . . . . . T T . . . . . A . . . . AT . T . C . A . . . A . . . . .
blockSeqs : . . . . . . . C . . . . . A . . . . . . . TTT . . A . . . . T . . . . . . . . . C T . . . . . A . . . . A . T . C . A . . . A .
blockSeqs : . . . . . . . C . . . . . T . . . . . . . ATT . . T . . . . C . . . . . . . . . C T . . . . . A . . . . A . . . . . . . . .
blockSeqs : . . . . . . . C . . . . . G . . . . . . . AT . . G . . . . T . . . . . . . . . C T . . . . . C . . . . A . . . . . .
blockSeqs : . . . . . . . C . . . . . A . . . . . . . A . . G . . . . T . . . . . . . . . C T . . . . . A . . . . . .
blockSeqs : . . . . . . . C . . . . . . . . . A . . . . T . . . . . . . . . C . . . . . . C . . . . . .
blockSeqs : . . . . . . . C . . . . . G . . . . T . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : **** ATTT******* *** C*** *** ** *** AT****** **** GC** *** ***
originalCons : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACA-CAACAATA---TTTTATTTTAGGCCT
finalCons : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTATTT-------GGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTTC---TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-AAT------TAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAGC--GATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACA-CAACAATA---TTTTATTTTAGGCCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAATTTTGGTGGGTAAATTATTTTTTGTTGGTGTAAAAAGAAAATAACACCAGCATAATAAGACACCAAGGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 22222 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 3333333 11111111 111111 11111 1111 111111 1111 1111 111 111 11 11 22 2222
lowQualScore : 3 2 2 2 2 5 2 5555 6 3 3 3 77 44 7777 4 4 4 4 4 4 99999999999 5 0 5 0 8 22 2 00000 9999999999999999999999999999999999999999999999999999999999999999999999999999 9 1111 2222222 3 3 444 44 555 2 3 3 6 3 44 555 3 3 3 0 555 88888 4444 3 555 3 3 44 3 77 555 555 44 3 99999999 000000 4 55555 1 66 1 0000 5 5 222222 5 6 4444 3333 111 88 444 8 11 6 00 99 0000 3
lowQualScore : . . . . . . . .... . . . . .. .. .... . . . . . . ........... . . . . . .. . ..... ............................................................................ . .... ....... . . ... .. ... . . . . . .. ... . . . . ... ..... .... . ... . . .. . .. ... ... .. . ........ ...... . ..... . .. . .... . . ...... . . .... .... ... .. ... . .. . .. .. .... .
lowQualScore : 1 9 9 9 9 7 9 1111 2 3 6 3 99 55 7777 0 0 0 0 0 0 00000000000 8 8 8 8 0 00 2 00000 8888888888888888888888888888888888888888888888888888888888888888888888888888 2 2222 5555555 6 3 444 22 444 9 1 7 2 1 22 888 3 3 3 1 888 33333 8888 2 444 1 1 22 1 77 888 888 66 6 11111111 555555 9 66666 1 11 9 6666 0 0 666666 7 7 2222 8888 777 88 000 0 00 4 88 00 8888 2
consensus : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACA-CAACAATA---TTTTATTTTAGGCCT
Reference ( family-4969 ) : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGGGGGGGGGGGGGGGGGGGGGGGGAGGGCACAAGGACTCGTCACGGA-CTNNTTGTCTT-----GTTATTTGACACCGTC-G--T-------------CTATA-----TCTA------------TATTTN------------CG-CG-TG--AGCCCATG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCCTTTCAT-TG-GA--G-CACCA-NT---T---A--GGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--A---AAA-TTCTTC-CGG----TCGCAG--CGATTT---TT-TCGG---G-T--CGGTCGGGATT-AGGGAAACA-CAACAATA---TTTTATTTTAGGCCT
gi|1 : AAAGT-AA-TAATTGTTT-G-TTTCC-CCAACA-C-CC----A-CTCTA-CAG-G-T-TG--G-
gi|1 : ggccatGG-CTCATTGT--T-----AATATTTTACACCGTT-A--T-------------TT--------TCTA------------GATTTA------------CAACA-TA--TATCTATGGTCTTGAATATAGATTCAATCGGAAACT--TTT--TCTCTCCCT-A-TGCCGAATTA-CAAAA--AC------TTT-AAGAGAAAAGTGG-----C-----TT------CGTATT-GACTCCATACCACTTTCAT-AG-GATCG-CACCA-ATGATT---A--GGATTTCCA-----A-TGAAAACA------AAAAAT-----TCCA--CACAA----ACTTGAG-CTAT--A---AGATTTCTTTACGGGGAATTACAGTATAATTTTGATT-TCGGGAAG-T--CGGTC-AGATT-AGGAAGATA-TAACAATA----TTCATTTTAGGCCactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaatggctcattgttaatattttacaccgttattttctagatttacaacatatatctatggtcttgaatatagattcaatcggaaactttttctctccctatgccgaattacaaaaactttaagagaaaagtggcttcgtattgactccataccactttcataggatcgcaccaatgattaggatttccaatgaaaacaaaaaattccacacaaacttgagctataagatttctttacggggaattacagtataattttgatttcgggaagtcggtcagattaggaagatataacaatattcattttaggcc
gi|10 : ggccataaagtaataattgtttgtttccccaacacccactctacaggttggactaaggcatcaataacgcccctgtggtacgtcaagaggagtgtagaacccttccattggcgaacatgacttagtcatgaacaat-AAATGAATTA--TC---ACCTTA-TGT-GA-TTA-CCAAA--ACGTCGC-TTTAGA-AGCAAAAAGGCTTTCC-----TTTATC-TCGTATT-GA-TCC---TCCC-TTCAT-TT-GA--GTCACCACGT---G---A--GGATTTC-A-----A--TAAAAAG------AAA--T-----TCTAATCACAA----AACTG-G-C
gi|11 : gggtgggttaaattgttttttgttggtatgtgtaaaaaggaaataacaccagcattatataaataggacaccaaggtcaagggcgtatcaagtgttcatttcccttaattatggcagatatattaaattaaacttCAAAAAT-AAATAATTGTTT------CC-CCAA-A-C-CC---AAACCCTATCAG-G-TATG--G-GTGTGGGTAAGTAGG-T-A-G-G-TAAAAT-ATCTT------------GGGGGGGGGGGGGGGG
gi|12 : gcAAAAAT-AAATAAATGGTT-GCTTTCC-CCAA-A-T-CC---GAGCCCTATCAG-G-T-TGTAG-GTGT-GGTA----GGCT-A-G-G-CTAGAT-AATTT------T-T-TGGGGGGGGGtaaattgttatttttgttggtatggtgtaaaaaggaaataacaccaggccataatacgacaaacaaggtctaggacgtatcaaagtggttcattcccttattggcagatatattgataaacttctaaacgttttttaacct
gi|12 : ca-TCG-AAACG--TTT--TC---ACCT-tacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaactcgaaacgttttcacct
gi|13 : caaaaaataaataaatggttgctttccccaaatccgagccctatcaggttgtaggtgtggtaggctaggctagataattttttgggggggggtacaattgatttttatggctaatgtataaaagaaagtaacaccagcatgataggacaccaaggtctagggcgttatatcaagtgttcttcatttccctttaatatggcagataaataaaac-A-TGCTGA-TTA-CAAAAAAGCG---CTTTT-GA-AGAAAAGCGA---T-C-----TTT--T-TCATATTTGACTCC---TCCCTTTCAT-TGCGA--G-CACCA-CT---T---ATTTGATTTC-G-----ATTTTAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAATGAA---AAA-TTCTTC-CGG----TTGTAG--CGA-TT---TT-TCGG---G-TTCCGGTCAGGA
gi|14 : ataaactcacgttttcggaaaggcctataacatag-TTG-AAACG--TTT--TC---ACCT-AATGCTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCCAGAAGTTT--C-TTGTATTGGACTCC---TCCCTTTCAT-TG-GA--G-CACTA-CT---TTAAA--AGATTTC-A-----A-TAAAAAAA------AAAA
gi|15 : aacaccagcataacaggacaccaaggtctagggcatatcatgttcatttcccttatggcagatatattaaataaaac-TCG-AAACG--TTT--TC---ACTT-A-TGCCGA-TTA-CAAAG--GTG---C-TTT-AA-AGAAAAGTGG---TCC-----TTT--T-TCGTATTTGACTCC---TCCCTTTCAT-AG-GA--G-CACCA-AT---T---T--GGATTTC-A-----A--TAAAAAA------a
gi|17 : -TG--G-GTGTGAGTA----GG-T-A-G-G-TAAAAT-ATTTTA---------------------------------GGGGGCACAAGGACTTGTCACGAA-CTTATTGTCTT-----ATTttc
gi|18 : CAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-A-CCGCGGA-CCCTATCAG-GTT-TG--G-GTGTGGGTA----G
gi|19 : gggcCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-A-C-CT---GA-CCCTAT
gi|2 : gaggcAAAAT-AAATAACTGTTT-G-TTTCC-CCAA-C-C-TG---GA-CCCTATCAG-A-T-TG--TTGTGTGAGTA----GG-C-A-GAG-TAAAAT-ATTTTT-----TAT-TGGGGGGAGGTGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-----NNNNNNNNNNNNNNNN-N--NNNNAATACAGATACTATAGAGGGTCAA------------TATTTT------------CG-TG-TACAAGCCC-TG----TGAGT-------CA-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTC-GAAAA--GCG---C-TTT-GA---AAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCT---CGCCTTTC---TG-AA--------A-AT---T---T--TGCTTTT-ATTTATA-TTGCAATC------ATAATTGGTGCTCCA--C-CAATTATGATT--G-CAAT--AAATAAA-T----------------CA----AATTT---TT---GG---G-T--CAGTCGAGATT-CGGGAAACACCAACAATA---TTTTATTTT-GGCCTtgg
gi|20 : ggccCAAAAAT-AAATAATTGTCT-G-TTTCT-CCAA-A-C-CC---Ga
gi|21 : cattgggcTATTT-G-TTTTC-CCAA-A-C-CC---GA-CCCTATCAG-
gi|3 : atataCAAAAGT-AAATAAATGTTT-G-TTTCC-TCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----GG-T-A-G-G-TAAAAT-ATTTTA-----T-T-TGAGGGGAGGGGGGGGGGGGGGGGGAAGGCACAGGGACTCATCACAAA-CTTTTTGTCTT-----GTTATTTGACAC---C-G--T-------------CTAT------TCTA------------TATTTA------------CA-CG-TG--AGTCCCTG----TGAGT-------CA-TCA-AAACA--TTT--TC---ACCA-A-TACCGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCGG---TTC-----TTT--C-TCGTATTTGACTCA---TCCCTTTCATAGG-GA--G-CACCA-AT---T---A--TGATTTC-A-----A-TTAAAAAA------AAAATT-----TCCA--CACAA----AATTG-G-CAAT--T---AAA-TTCTTC-CGG----TCGCGC--CGATTT---TT-TCGG---G-T--TGGTCGGGATT-GGGGAAACA--AACAATA---TTGTATTTTAGGCCT
gi|4 : CAAAAAT-AAATAATTGTTTTG-TT----CCAT-A-C-C----GA-ACTTATCAG-G-T-TGT-G-ATGT----A----GG-T-A-G-G-TAAAATGATGTTA---------TGGGGGGGTGGGGGAGGGGGGGG
gi|4 : ggcACT--TTA--TC---ACCT-A-TGCTGA-TT--CAAAA--ACG---C-TTT-GA-A-AAAAGCGG---TCC-----TTT--C---ATATTTGATTCC---TCCCTT-CAT-TG-AG--C-CACCA-CT---T---A--GGATTTT-G-----A-TTAAAAAAAAAAAAAAAAAA-----T-CA--CACAA----AATTG-GCCAAT--A---AAA-GTCTTC-CGT----GCGCAG--TGATTT---taaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgactttatcacctatgctgattcaaaaacgctttgaaaaaagcggtcctttcatatttgattcctcccttcattgagccaccacttaggattttgattaaaaaaaaaaaaaaaaaatcacacaaaattggccaataaaagtcttccgtgcgcagtgattt
gi|5 : ggccaaaaataaataattgttttgttccataccgaacttatcaggttgtgatgtaggtaggtaaaatgatgttatgggggggtgggggaggggggggtaaattgttttttgttggatgtgtaaaaaggaaataaacaccagcctcaaaataggacaccaacggtctaggcgtccaagtgttctattcccttagagataataacataaaactcgCAAAAAT-AAATAATTGTTT-G-TTTCC-CCAA-AAC-CC---GA-CCCTATCAGAG-T-TG--G-TTGGGTATA----GG-TTA-G-GATAAAAT-ATTTTA-----T-T---------GGGGGGGGGAGGGGGGGAGGACACAAGA--TTGTC-CAGAGCTACTTGTCTTTAATTGTTATTTGACACCGTCTGATT-------------CTATA-----TTTACAAATAGCAGAATATTTCGTTGATGATGCTCG-TGATG--AGCCCATG----TGAGT-------CA-TGG-AAACG--TTT--TC---ACCT-A-TGCCAA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGTGG---TCC-----TTT--C-TCGTATTTGACTCC---TCCATTCCAT-AG-GA--G-CACCA-AT---T---A--GGATTTC-A-----A--TAAAAAA------AAAA-T-----TCCA--CA
gi|6 : ggggcCAAAAATTACATAAT-GTTT-G-TTTCCGCCAA-AACGCC---GA-CCCTATCAG-G-T-CG--G----TGGGGA----GG-T-AAG-G-TAAAAT-ATTTTA-----T-TATGGGGGGGAGGGGGGGG
gi|6 : gc-TCG-AAACG--TTT--TC---ACCT-A-TGCTGA-TTA-CAAAA--GCG---C--TT-GA-AGAAAAGCGG---TCC-----TTT--CTTCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CAttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaactcgaaacgttttcacctatgctgattacaaaagcgcttgaagaaaagcggtcctttcttcgtatttgactcctctctttcattggagca
gi|7 : gccaaaaattacataatgtttgtttccgccaaaacgccgaccctatcaggtcggtggggaggtaaggtaaaatattttattatgggggggaggggggggttaaattattttttggttggtatgtgtgaaaaggaaataacccagcataaacaggaacaccacggtctagggcgtatcacaagtgttcaatttcccttatggcagataaaaaataaaacCAAACAT-TAATAATTGTTT-G-TTTCC-CCAA-A-C-T----GA-CC-TATCAG-G-T-TG--G-GTGTGGGTA----GG-T-A-G-G-CAAAAT-ATTTTATAATTT-T-TGGGGGGGGTGG
gi|7 : gc-TCA-AAAC---TTT--TC---ACAT-A-TGCTGA-T-----------------------A-ATAAAAGTGG---------------------------ACTCC---TCCCTTTCAT-TG-GA--G-CACCAGTT---T---A--GG---------------------A------AAAATT-----T-CA--CACAA----AATTG-G-CAAT--A---AAA-taaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccctcaaaacttttcacatatgctgataataaaagtggactcctccctttcattggagcaccagtttaggaaaaatttcacacaaaattggcaataaaaat
gi|8 : gccaaacattaataattgtttgtttccccaaactgacctatcaggttgggtgtgggtaggtaggcaaaatattttataatttttggggggggtggtaaatgtttttttggttattgtaagcgaaataacaccagataatgacaccaaggtctagtattaaggcatatcaagtttcattaccttcaattggcagatatatttaataaccc-TCG-AAACA--TTTATTC---ACCT-A-TGCTGATTTACCAAAA--Gat
gi|8 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaacTCT---CCCCCTTCAT-TG-GA--G-CACCA-CT---T---A--GGATTTC-A--------TAAAAAA------AAAGTTG----TCCA--C-CAA----AATTG-G-CAAT--A---AAT-ATCTTC-CAG----TCGCAG--TGATTT---TTGTCAG---GTT--CGGTCAGGATTAAGGGAAACA--AACAATATTTTTTTATTTTAGGCCggtctcccccttcattggagcaccacttaggatttcataaaaaaaaagttgtccaccaaaattggcaataaatatcttccagtcgcagtgatttttgtcaggttcggtcaggattaagggaaacaaacaatatttttttattttaggccccatatttaaatgttgtttattttattatacaggct
gi|9 : acatacaatgtgctactggtgtatcgaaggtttcatttcccttatggcagatatgttaaatagaaactcgaaacatttattcacctatgctgatttaccaaaagggCAAAAAT-AAA--A--GTTT-G-TTTCC-CCAA-A-C-CC---GA-CCCTATCAG-G-T-TG--G-ATGTGGGTA----G-------------AAT-ATTTTATT---T-T-TGGGGGccatatttaaatgttgtttattttattatacaggct
gi|9 : agac-TCG-AAACG--TTT--TT---ACCT-A-TACTGA-TTA-CAAAA--GCG---C-TTT-GA-AGAAAAGCAG---TCC-----TTT--C-TCGTATTTGACTCC---TCTCTTTCAT-TG-GA--G-CACCA-TT---T---A--GGATtaaattgttgatatatgtaaaaaggaaacaacaccagcataacgggacaccaaggttgtatcaagtgttcatttccctttatatggcagatatattaaataaaattcgaaacgtttttacctatactgattacaaaagcgctttgaagaaaagcagtcctttctcgtatttgactcctctctttcattggagcaccatttaggat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATAATTTTGGTGGGTAAATTATTTTTTGTTGGTGTAAAAAGAAAATAACACCAGCATAATAAGACACCAAGGT