lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 1 22 1 1111111 1 111 444444444444444444444444444444444444444444444444444444444444444444444444 3333333333 1111111111 22222222222222222 111 111 11 111111111111111111111111 44444444444444444 11111 333 2222 111 22 555555
lowQualScore : 0 3 6 88 5 7 5 7777777 5 5 5 000 555555555555555555555555555555555555555555555555555555555555555555555555 4444444444 0 4444444444 5 44444444444444444 444 77 4 5 000 4 1 99 4 77 22 111111111111111111111111 77777777777777777 0 66666 888 000 5555 9 888 66 444444
lowQualScore : . . . .. . . . ....... . . . ... ........................................................................ .......... . .......... . ................. ... .. . . ... . . .. . .. .. ........................ ................. . ..... ... ... .... . ... .. ......
lowQualScore : 2 2 0 22 2 2 7 9999999 7 7 6 000 222222222222222222222222222222222222222222222222222222222222222222222222 5555555555 5 1111111111 0 44444444444444444 444 99 3 7 999 4 1 11 0 99 77 555555555555555555555555 88888888888888888 8 77777 000 333 3333 7 000 55 000000
consensus : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATA------GA------AATCACTTG-----C--ACCGCGC-------CG-C---GNAAG-AT-C-----TA---ACGAAGCGTCGACCGA-GAAAACCGCCATC-----T----TG-GCTCTCCGTAT---AACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CACAAGGTGGAGNTT--GCAACGAATCTTGAT--------A------A-AGAAGATATGTGTAGGCTAC----A--TATGTAG-C-TAATGTTT-----ACAGCGCAAGATCGA-N-TTTNAG-TCGCTCCGACAGAAAGTACGGAAAAGAAGTNGTTTTT
Reference ( gi|2 ) : AAAAGACCAAAC-TACACTGTCGAAGTCTTCTTTTATACA-AA--AAA--GTAAACAAACACT-GATAA---ATA------GA------AATAACTTG-----C--AGTGCAC-------CA-C---ACAAGCATTC-----TA---ACGAAGC-TTGACCTA-GAAAACCGCCATC-----T----TG-GCTCTTCGTAT---AACTGAAGCATGTA--CTT--TATTGA-TCAAATTTGAAAA--TATAAGGTGGTGCTT--GCAACAAATCTTGAT--------T------A--------ATGTGTAGGCTAC----A--TATGTAGACTTAATGTTT-----ACAGTGCAAGACCGA-C-TTTACG-TCACTCCAGTAGAAAGTAACGAAAA-----TGTTTTT
gi|1 : AAAACACCAAAAGTA-ATTGCAAAAGCCTTTGTTGATACA-AA--ATG--GAAAATG--CACC-GCAAA---ATG--------------ATTCCCTTA-----------GCAC-------CG-G---AC-------------TA---ACGAAGC-GT-------------CACCATC-----T----TG-GCTCTTCGCAC---AA---------------TT--TATTCA-TAACATTTGAAAA--CATAAGAAGGAGCTT--GCAATAAATTTTGAT--------A------ACAGAAGATATGTGTAGGCTACTAGTA--CATGT----TTA--CTTC-----ACAGCGCAAGATCTA-CTTTTGAG-TCGCTCCGACAGAAAGTGCGGAAAAGAAGTTGTTTT
gi|4 : ttacAAAGGCAAAAC-TTCACTGTACAAACCATGTTT-ATACA-AA--AAAATGTAAACAAGCACT-GA-AA---ATA------CACCGCACAATGATTTC-----CTTAGTA-----------A-C---AGA------C-----TA---ATGAAGCGTCGGCCGA-GAAAACCATCATC-----T----TG-GCTCTCCAAATTTAAAC-AAAGTACGTATTCTA--TATTGA-TCAAGTTTGGGAA--CATAAGATGctttctttttgtaatctaaacccgacatcacacaaactacagcatgcattaaaaatgctacataatttcaggggttttatctaataaaagactacattgtgacttataacatgctacattgttgcaaatataagtccgataagtaaaacagttctacacctac
gi|13 : atgcagAATGACAAAAC-TACACTGTGCAAGTCTTCGTTTATACA-AA-------GTAAACAAACGCT-GAGAA---ATA------GA------AATCACATG-----C--ACCGCAC-------
gi|9 : tAAAACTACTC-TACACTGTACAATTCTTC------ACATAA--AAA--GTAAACAAACACTTGAGAA---ACA------GA------A-TCACCTGAGAAAC--AGCACAG-------CT-C---A-AAG-ATTCGCT--TA---GCGAAGCGTCGACCGA-GAAAACCGCCATC-----T----TG-GCTTTTCATAT---Aggttactcacttagcaa
gi|11 : caaaataacCAAACCTACACAGCACAAGTCTACGTTTAT-CA-AACAAAAT-GTACACAAACAAT-GA-AA---ATATACCGCGG------AATGATTTC-----C--TCGGCA---------A-T---AGA------C-----TA---ACGAGGCATCGAACGA-GAAATCCGCCATCTTGCGT----TG-GCTCTCCACAT-----CTGAAttagca
gi|12 : gAAGTCTTTGTTTATAAA-CA--AAA--GTAGATAAGCATT-GATAAATTATA------GA------AATCACTTG-----C--GCTGCGCAAAGATTCA-CTTAGCAA-CATAC-----CG---ACGAAGCGTCGACtgaa
gi|10 : cTATA-AA--AAT--ATGAACAA----T-GATAA---ATA------GA------A-----TTA-----C----TGCAA-------CATC---GAAAGTAT---------------AAAC-T---CCTG-AAAAA--GCCGTA-----T----TG-GTTGTTTTTGC---AAACGGAGCTTATA--CTT--TATTTATTC---TTAGAAAATGTATGAGCTG--GCTTTGGCAAC-AACCTTGAT--------T------tga
gi|8 : TACGC-------TG-C---GCAAGGATTCGCTACTACCCACGAATCGTCGAACTGCGAAGTCGGCCAT------T----TGCATTCTTCGTAT---AACCGGAAGATGCA--ATT--TATTTA-TCAAATTTGCAAA--CA----GTGGCTATT--G-A--AAAT------------------------------ATATGAAAGTTAC----A--ATTG------TAATGTTT-----AC
gi|7 : C-----TA---ATGAAGCGTCAACCAA-GAGGACCGCAATC-----T----TG-GCTCTCCG-----------AAGTATGTA--CTTGTTTTTTA-TCAAGTCTGAAAA--CACAAGGTGGAGTTT--GTAATGAATCTTGAT--------tttgc
gi|16 : aatggaaatcacttaagaacagaCGAGGCGTCGACCGA-GAAAACCGCCACC-----TCAAATG-GCTgaggcgattgtaatttgaaatttagttttaca
gi|6 : acagactgc---AACTAAAATGTGTA--TTT--TATTGA-TCAAATTTGAAA----ACAAGATTG-GGTT--ACAATAAATCTTGATACGAAAGAT---------------ATGTATAGACTGC----ATGTATGTAGGCCTAATGTTTATTTCATATTGCAAAATAGATT-TTTAAA-TCGCTTCGACAAAAAGTAatccacaaaagatggagttt
gi|14 : aaGTA---TT--TAT-GA-TTAGATTTCAAAA--TGCAAGGCGTAGTTT--ACAACGAATCTTAAA--------ACAAAAAA--------ATGTGTAGGCTGC----A--TACGAAGAC-TAATATTT-----ttggaatatt
gi|15 : AAGATGGAGTTT--GCAACAAGTCTTAAT--------A------AAAGAAGATATTTGTAGACTAC----C--TTAGTAGTCATAATGTTT-----AC
gi|3 : aTTC-----ACAGTGCAAGATCAA-A-TTTTTGGTCTCTCCGACAGAAAGTATTGAAAA-----AGTTTTTttc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): CAACAGAAAGTACTGAAAAGATTTATAAACATCAAACCTGACATCAAAGAAAATCCTTCATATACTAGAAAATGTTGTTTGATTTTATAAAATATTTTAAAGTACATTGTTACTTACTATGACATGCAGAATTGTCGCCTATATAAATCCGACATAGTAAAATATG
Unaligned ( gi|17 ): TCTTTGTTTTAAAAATGTAAATACTGATAATTAGAAATTATTTGCACCTTGCAAAGATTCACTT
Alignments
lowQualScore : 111 111 111 999999999999999999999999999999999999999999999 1111111111 111 111111 444444444444444 22222 22 111 111 555555
lowQualScore : 1 6 2 0 4 66 111 77 4 5 111 8888 5 000 777 111111111111111111111111111111111111111111111 777 1 4 1 1111111111 4 66 0 888 22 111 66 1 5 66 4 6 1 0 7 888888 666666666666666 6 88888 2 0 11 111 0 666 222222
lowQualScore : . . . . . .. ... .. . . ... .... . ... ... ............................................. ... . . . .......... . .. . ... .. ... .. . . .. . . . . . ...... ............... . ..... . . .. ... . ... ......
lowQualScore : 0 7 2 1 4 11 777 00 4 3 000 5555 8 333 000 333333333333333333333333333333333333333333333 000 6 0 1 6666666666 4 11 9 111 44 444 99 0 0 99 2 4 0 2 4 111111 000000000000000 7 66666 0 2 00 888 2 888 000000
consensus : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATA----GAAATCACTT--GC---ACCGCG----C-----------GC---GNAA-G-AT------C----TA---ACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CACAAGGTGGAGTTTGCAACGAATCTTGAT-AA-GGAAGATATGTGTAGGCTACA--TATGTAGA-C--TA-ATGTTT-----ACAGTGCAAGATCGACTTTTA-AGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
Reference ( family-494 ) : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATA----GAAATCACTT--GC---ACCGCG----C-------C---GC---GNAA-G-AT------C----TA---ACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CACAAGGTGGAGNTTGCAACGAATCTTGAT-AA-AGAAGATATGTGTAGGCTACA--TATGTAG--C--TA-ATGTTT-----ACAGCGCAAGATCGA-NTTTN-AGTCGCTCCGACAGAAAGTA-CGGAAAAGAAGTNGTTTTT
gi|1 : AAAACACCAAAAGTA-ATTGCAAAAGCCTTTGTTGATACA-AA--ATG--GAAAATG--CACC-GCAAA---ATG------ATTCCCTTA-GC---ACCG----------------------------G-A-------C----TA---ACGAAGCGTCA--------------CCATC-----T----TG-GCTCTTC--GCACAA---------------TT--TATTCA-TAACATTTGAAAA--CATAAGAAGGAGCTTGCAATAAATTTTGAT-AACAGAAGATATGTGTAGGCTAC-------TAG-----TACATGTTTACTTCACAGCGCAAGATCTACTTTTG-AGTCGCTCCGACAGAAAGTG-CGGAAAAGAAGTTGTTTT
gi|10 : ttacTATA-AA--AAT--ATGAACAA----T-GATAA---ATA----GAA-TTACT---GC---AACAT------------------C---GAAA-GTAT-------------------AAAC-TC---CTGAAAAAGCCG---TA-----T----TG-GTTGTTT--TTGCAAACGGAGCTTATA--CTT--TATTTATTC---TTAGAAAATGTATGAGCTGGCTTTGGCAAC-AACCTTGAT-ctttctttttgtaatctaaacccgacatcacacaaactacagcatgcattaaaaatgctacataatttcaggggttttatctaataaaagactacattgtgacttataacatgctacattgttgcaaatataagtccgataagtaaaacagttctacacctac
gi|11 : CAAACC-TACACAGCACAAGTCTACGTTTAT-CA-AACAAAAT-GTACACAAACAAT-GAAAAT--ATACCGCGGAATGATTT--------CCTCG----------------GC---AATA-G-A-------C----TA---ACGAGGCATCGA-ACGAGAAATCCGCCATCTTGCGT----TG-GCTCTCC--ACAT--CTGAAt
gi|12 : gCAAGTCTTTGTTTATAAA-CA--AAA--GTAGATAAGCATT-GATAAATTATA----GAAATCACTT--GC---GCTGCG----CAAAGATTC---ACTTAGCAA-C-ATA-----C----CG---ACGAAGCGTCGA-CTGAtgaa
gi|13 : AATGACAAAAC-TACACTGTGCAAGTCTTCGTTTATACA-AA-------GTAAACAAACGCT-GAGAA---ATA----GAAATCACAT--GC---ACCGCA----C-------
gi|14 : tGTA---TT--TAT-GA-TTAGATTTCAAAA--TGCAAGGCGTAGTTTACAACGAATCTTAA--AA-CAAAAAAATGTGTAGGCTGCA--TACGAAGA-C--TA-ATATTT-----ggttactcacttagcaa
gi|15 : AAGATGGAGTTTGCAACAAGTCTTAATAAA-AGAAGATATTTGTAGACTACC--TTAGTAG--TCATA-ATGTTT-----AC
gi|16 : aA-G-A-------C----TG---CCGAGGCGTCGA-CCGAGAAAACCGCCACC-----TCAAATG-GCTATCC--ttc
gi|17 : acTCTTTGTTT---TA-AA--AAT--GTAAATA----CT-GATAA---TTA----GAAATTATTT--GC---ACCTTG----C-----------------AAA-G-AT------acaaaagatggagttt
gi|2 : AAAAGACCAAAC-TACACTGTCGAAGTCTTCTTTTATACA-AA--AAA--GTAAACAAACACT-GATAA---ATA----GAAATAACTT--GC---AGTGCA----C-------C---AC---ACAA-GCATT-----C----TA---ACGAAGC-TTGA-CCTAGAAAACCGCCATC-----T----TG-GCTCTTC--GTATAACTGAAGCATGTA--CTT--TATTGA-TCAAATTTGAAAA--TATAAGGTGGTGCTTGCAACAAATCTTGAT-TA--------ATGTGTAGGCTACA--TATGTAGACT--TA-ATGTTT-----ACAGTGCAAGACCGA-CTTTA-CGTCACTCCAGTAGAAAGTA-ACGAAAA-----TGTTTTTtcactt
gi|3 : TTC-----ACAGTGCAAGATCAA-ATTTTTGGTCTCTCCGACAGAAAGTA-TTGAAAA-----AGTTTTT
gi|4 : gttcatAAAGGCAAAAC-TTCACTGTACAAACCAT-GTTTATACA-AA--AAAATGTAAACAAGCACT-GA-AA---ATA---------CACC---GC---ACAATGATTTC-------CTTAGT---AACA-G-A-------C----TA---ATGAAGCGTCGG-CCGAGAAAACCATCATC-----T----TG-GCTCTCCAAATTTAAACAAAGTACGTATTCTA--TATTGA-TCAAGTTTGGGAA--CATAAGATGaaagtctaaaccctacttcgcacaaaaatataaaatgtattaaaaaaaaatgctacgtgatttcatttaataaaaggtttaaactacattttaacttaataccaaaacatgctgcattatattttttgcaactgacaagtaaaacatgtagatctac
gi|6 : atgcagAACTAAAATGTGTA--TTT--TATTGA-TCAAATTTGAAA----ACAAGATTG-GGTTACAATAAATCTTGAT-AC-GAAAGATATGTATAGACTGCATGTATGTAGGCC--TA-ATGTTTATTTCATATTGCAAAATAGATTTTTA-AATCGCTTCGACAAAAAGTATTGGAA
gi|7 : aaA---ATG----GAAATCACTTAAGA---AC----------------------------A-G-A-------C----TA---ATGAAGCGTCAA-CCAAGAGGACCGCAATC-----T----TG-GCTCTCC--G--------AAGTATGTA--CTTGTTTTTTA-TCAAGTCTGAAAA--CACAAGGTGGAGTTTGTAATGAATCTTGAT-GA-GGtatt
gi|8 : CG----C-------T---GC---GCAA-GGATTCGCTAC----TACCCACGAATCGTCGAACTGCGAAGTCGGCCAT------T----TGCATTCTTC--GTATAACCGGAAGATGCA--ATT--TATTTA-TCAAATTTGCAAA--CA----GTGGCTATT--------------------GAAAATATATGAAAGTTACA--ATTG--------TA-ATGTTT-----ACcgattgtaatttgaaatttagttttaca
gi|9 : taAAAACTACTC-TACACTGTACAATTCTTC------ACATAA--AAA--GTAAACAAACACTTGAGAA---ACA----GAA-TCACCT--GAGAAACAGCA----C-------A---GC---TCAAAG-AT------TCGCTTA---GCGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTTTTC--ATATAtttgc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAACAGAAAGTACTGAAAAGATTTATAAACATCAAACCTGACATCAAAGAAAATCCTTCATATACTAGAAAATGTTGTTTGATTTTATAAAATATTTTAAAGTACATTGTTACTTACTATGACATGCAGAATTGTCGCCTATATAAATCCGACATAGTAAAATATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 111 111 111111111111 000000000000000000000000000000000000000000000000 1111111111 111 1 22222 222222222222222 11111 11111 111 22222
lowQualScore : 1 6 2 0 4 4 333 77 4 5 111 222222222222 3 0 222222222222222222222222222222222222222222222222 1 4 1 1111111111 4 66 0 888 22 111 66 1 5 66 0 5 3 7 11111 666666666666666 44444 66666 0 33 22 0 666 55555
lowQualScore : . . . . . . ... .. . . ... ............ . . ................................................ . . . .......... . .. . ... .. ... .. . . .. . . . . ..... ............... ..... ..... . .. .. . ... .....
lowQualScore : 0 7 2 1 4 4 333 00 4 3 000 444444444444 4 7 000000000000000000000000000000000000000000000000 6 0 1 6666666666 4 11 9 111 44 444 99 0 0 99 5 2 1 4 33333 777777777777777 33333 77777 2 55 00 2 888 00000
consensus : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA-AAA--GTAAACAAACACT-GANAA---ATA----GA------AATCACTT--G-----CACCGC-GC--C-AAAG-AT---------------C----TAACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CATAAGGTGGAGTTTGCAACGAATCTTGAT-AA-NGAAGATATGTGTAGGCTACA--TATGTAG-A-C-TAATGTTT-----AC-----AGTGCAAGATCGACTTTTAAGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
Reference ( family-494 ) : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA-AAA--GTAAACAAACACT-GANAA---ATA----GA------AATCACTT--G-----CACCGC-GC-GCGNAAG-AT---------------C----TAACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CACAAGGTGGAGTTTGCAACGAATCTTGAT-AA-GGAAGATATGTGTAGGCTACA--TATGTAG-A-C-TAATGTTT-----AC-----AGTGCAAGATCGACTTTTAAGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
gi|1 : AAAACACCAAAAGTA-ATTGCAAAAGCCTTTGTTGATACA-AA-ATG--GAAAATG--CACC-GCAAA---ATG------------ATTCCCTTA-G-----CACCG-----------G-A----------------C----TAACGAAGCGTCA--------------CCATC-----T----TG-GCTCTTC--GCACAA---------------TT--TATTCA-TAACATTTGAAAA--CATAAGAAGGAGCTTGCAATAAATTTTGAT-AACAGAAGATATGTGTAGGCTAC-------TAGTA-C---ATGTTT-----ACTTCACAGCGCAAGATCTACTTTTGAGTCGCTCCGACAGAAAGTG-CGGAAAAGAAGTTGTTTT
gi|10 : ttacTATA-AA-AAT--ATGAACAA----T-GATAA---ATA----GA------A-TTACT---G-----CAACAT-----CGAAAGTAT-------------------------AAAC-TC---CTGAAAAAGCCG---TA-----T----TG-GTTGTTT--TTGCAAACGGAGCTTATA--CTT--TATTTATTC---TTAGAAAATGTATGAGCTGGCTTTGGCAAC-AACCTTGAT-ctttctttttgtaatctaaacccgacatcacacaaactacagcatgcattaaaaatgctacataatttcaggggttttatctaataaaagactacattgtgacttataacatgctacattgttgcaaatataagtccgataagtaaaacagttctacacctac
gi|11 : CAAACC-TACACAGCACAAGTCTACGTTTAT-CA-AACAAAATGTACACAAACAAT-GAAAAT--ATACCGCGG------AATGATTT----------CCTC-G--GCAATAG-A----------------C----TAACGAGGCATCGA-ACGAGAAATCCGCCATCTTGCGT----TG-GCTCTCC--ACAT--CTGAAt
gi|12 : gCAAGTCTTTGTTTATAAA-CA-AAA--GTAGATAAGCATT-GATAAATTATA----GA------AATCACTT--G-----CGCTGC-GC----AAAG-ATTCACTTAGCAACATAC----CGACGAAGCGTCGA-CTGAtgaa
gi|13 : AATGACAAAAC-TACACTGTGCAAGTCTTCGTTTATACA-AA------GTAAACAAACGCT-GAGAA---ATA----GA------AATCACAT--G-----CACCGC-AC-G
gi|14 : tGTA---TT--TAT-GA-TTAGATTTCAAAA--TGCAAGGCGTAGTTTACAACGAATCTTAA--AA-CAAAAAAATGTGTAGGCTGCA--TACGAAG-A-C-TAATATTT-----gttactcacttagcaa
gi|15 : AAGATGGAGTTTGCAACAAGTCTTAATAAA-AGAAGATATTTGTAGACTACC--TTAGTAG-T-CATAATGTTT-----AC-----
gi|16 : aAG-A----------------C----TGCCGAGGCGTCGA-CCGAGAAAACCGCCACC-----TCAAATG-GCTATCC--ttc
gi|17 : acTCTTTGTTT---TA-AA-AAT--GTAAATA----CT-GATAA---TTA----GA------AATTATTT--G-----CACCTT-GC----AAAG-AT---------------acaaaagatggagttt
gi|2 : AAAAGACCAAAC-TACACTGTCGAAGTCTTCTTTTATACA-AA-AAA--GTAAACAAACACT-GATAA---ATA----GA------AATAACTT--G-----CAGTGC-ACCACACAAGCATT--------------C----TAACGAAGC-TTGA-CCTAGAAAACCGCCATC-----T----TG-GCTCTTC--GTATAACTGAAGCATGTA--CTT--TATTGA-TCAAATTTGAAAA--TATAAGGTGGTGCTTGCAACAAATCTTGAT-TA--------ATGTGTAGGCTACA--TATGTAG-A-CTTAATGTTT-----AC-----AGTGCAAGACCGAC-TTTACGTCACTCCAGTAGAAAGTA-ACGAAAA-----TGTTTTTtcactt
gi|3 : TTC-----AC-----AGTGCAAGATCAAATTTTTGGTCTCTCCGACAGAAAGTA-TTGAAAA-----AGTTTTT
gi|4 : gttcatAAAGGCAAAAC-TTCACTGTACAAACCAT-GTTTATACA-AA-AAAATGTAAACAAGCACT-GA-AA---ATA----CACCGCACAATGATTT----------CCTT-A--GTAACAG-A----------------C----TAATGAAGCGTCGG-CCGAGAAAACCATCATC-----T----TG-GCTCTCCAAATTTAAACAAAGTACGTATTCTA--TATTGA-TCAAGTTTGGGAA--CATAAGATGaaagtctaaaccctacttcgcacaaaaatataaaatgtattaaaaaaaaatgctacgtgatttcatttaataaaaggtttaaactacattttaacttaataccaaaacatgctgcattatattttttgcaactgacaagtaaaacatgtagatctac
gi|6 : atgcagAACTAAAATGTGTA--TTT--TATTGA-TCAAATTTGAAAA--CA--AGATTGGGTT-ACAATAAATCTTGAT-AC-GAAAGATATGTATAGACTGCATGTATGTAG-GCC-TAATGTTTATTTCAT-----ATTGCAAAATAGATTTTTAAATCGCTTCGACAAAAAGTATTGGAATA-----
gi|7 : aaA---ATG----GA------AATCACTTAAG-----AAC------------AG-A----------------C----TAATGAAGCGTCAA-CCAAGAGGACCGCAATC-----T----TG-GCTCTCC--G--------AAGTATGTA--CTTGTTTTTTA-TCAAGTCTGAAAA--CACAAGGTGGAGTTTGTAATGAATCTTGAT-GA-GGt
gi|8 : ACGAATCGTCGAACTGCGAAGTCGGCCAT------T----TGCATTCTTC--GTATAACCGGAAGATGCA--ATT--TATTTA-TCAAATTTGCAAA--CA----GTGG--------------CT--AT----TGAAAATATATGAAAGTTACA--ATTG--------TAATGTTT-----AC-----cgattgtaatttgaaatttagttttaca
gi|9 : tacgctgcgcaaggattcgctactacccAAAACTACTC-TACACTGTACAATTCTTC------ACATAA-AAA--GTAAACAAACACTTGAGAA---ACA----GA------A-TCACCT--GAGAAACAGCACAGC-TC-AAAG-AT---------------TCGCTTAGCGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTTTTC--ATATAtttgc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAACAGAAAGTACTGAAAAGATTTATAAACATCAAACCTGACATCAAAGAAAATCCTTCATATACTAGAAAATGTTGTTTGATTTTATAAAATATTTTAAAGTACATTGTTACTTACTATGACATGCAGAATTGTCGCCTATATAAATCCGACATAGTAAAATATG
Alignments
lowQualScore : 111 111 111111111111 777777777777777777777777777777777777777777777777777 1111111111 111 11111 222222222222222 11111 11111 111 22222
lowQualScore : 1 6 2 0 4 66 111 77 4 5 111 222222222222 3 0 777777777777777777777777777777777777777777777777777 777 1 4 1 1111111111 4 66 0 888 22 111 66 1 5 66 7 5 3 7 99999 666666666666666 44444 66666 0 33 22 0 666 55555
lowQualScore : . . . . . .. ... .. . . ... ............ . . ................................................... ... . . . .......... . .. . ... .. ... .. . . .. . . . . ..... ............... ..... ..... . .. .. . ... .....
lowQualScore : 0 7 2 1 4 11 777 00 4 3 000 444444444444 4 7 555555555555555555555555555555555555555555555555555 000 6 0 1 6666666666 4 11 9 111 44 444 99 0 0 99 0 2 1 4 00000 777777777777777 33333 77777 2 55 00 2 888 00000
consensus : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATA----GA------AATCACTT--G--------CACCGCGCCA---A-AG-AT---------------C----TA---ACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CATAAGGTGGAGTTTGCAACGAATCTTGAT-AAC-GAAGATATGTGTAGGCTACA--TATGTAG-A-C-TAATGTTT-----AC-----AGTGCAAGATCGACTTTTAAGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
Reference ( family-494 ) : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATA----GA------AATCACTT--G--------CACCGCGCCA---A-AG-AT---------------C----TA---ACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CATAAGGTGGAGTTTGCAACGAATCTTGAT-AAN-GAAGATATGTGTAGGCTACA--TATGTAG-A-C-TAATGTTT-----AC-----AGTGCAAGATCGACTTTTAAGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
gi|1 : AAAACACCAAAAGTA-ATTGCAAAAGCCTTTGTTGATACA-AA--ATG--GAAAATG--CACC-GCAAA---ATG------------ATTCCCTTA-G--------CACCG-----------G-A----------------C----TA---ACGAAGCGTCA--------------CCATC-----T----TG-GCTCTTC--GCACAA---------------TT--TATTCA-TAACATTTGAAAA--CATAAGAAGGAGCTTGCAATAAATTTTGAT-AACAGAAGATATGTGTAGGCTAC-------TAGTA-C---ATGTTT-----ACTTCACAGCGCAAGATCTACTTTTGAGTCGCTCCGACAGAAAGTG-CGGAAAAGAAGTTGTTTT
gi|10 : ttacTATA-AA--AAT--ATGAACAA----T-GATAA---ATA----GA------A-TTACT---G--------CA--ACATCG---A-AA-GT---------------A----TA---A----AC-TC---CTGAAAAAGCCG---TA-----T----TG-GTTGTTT--TTGCAAACGGAGCTTATA--CTT--TATTTATTC---TTAGAAAATGTATGAGCTGGCTTTGGCAAC-AACCTTGAT-ctttctttttgtaatctaaacccgacatcacacaaactacagcatgcattaaaaatgctacataatttcaggggttttatctaataaaagactacattgtgacttataacatgctacattgttgcaaatataagtccgataagtaaaacagttctacacctac
gi|11 : CAAACC-TACACAGCACAAGTCTACGTTTAT-CA-AACAAAAT-GTACACAAACAAT-GAAAAT--ATACCGCGG------AATGATTT-------------CCTCGGCA---ATAG-A----------------C----TA---ACGAGGCATCGA-ACGAGAAATCCGCCATCTTGCGT----TG-GCTCTCC--ACAT--CTGAAt
gi|12 : gCAAGTCTTTGTTTATAAA-CA--AAA--GTAGATAAGCATT-GATAAATTATA----GA------AATCACTT--G--------CGCTGCG-CA---A-AG-ATTCACTTAGCAACATAC----CG---ACGAAGCGTCGA-CTGAtgaa
gi|13 : AATGACAAAAC-TACACTGTGCAAGTCTTCGTTTATACA-AA-------GTAAACAAACGCT-GAGAA---ATA----GA------AATCACAT--G--------CACCGCAC
gi|14 : tGTA---TT--TAT-GA-TTAGATTTCAAAA--TGCAAGGCGTAGTTTACAACGAATCTTAA--AAC-AAAAAAATGTGTAGGCTGCA--TACGAAG-A-C-TAATATTT-----ggttactcacttagcaa
gi|15 : AAGATGGAGTTTGCAACAAGTCTTAATAAAA-GAAGATATTTGTAGACTACC--TTAGTAG-T-CATAATGTTT-----AC-----
gi|16 : a-AG-A----------------C----TG---CCGAGGCGTCGA-CCGAGAAAACCGCCACC-----TCAAATG-GCTATCC--ttc
gi|17 : acTCTTTGTTT---TA-AA--AAT--GTAAATA----CT-GATAA---TTA----GA------AATTATTT--G--------CACCTTG-CA---A-AG-AT---------------acaaaagatggagttt
gi|2 : AAAAGACCAAAC-TACACTGTCGAAGTCTTCTTTTATACA-AA--AAA--GTAAACAAACACT-GATAA---ATA----GA------AATAACTT--G--------CAGTGCACCACACA-AGCATT--------------C----TA---ACGAAGC-TTGA-CCTAGAAAACCGCCATC-----T----TG-GCTCTTC--GTATAACTGAAGCATGTA--CTT--TATTGA-TCAAATTTGAAAA--TATAAGGTGGTGCTTGCAACAAATCTTGAT-TA--------ATGTGTAGGCTACA--TATGTAG-A-CTTAATGTTT-----AC-----AGTGCAAGACCGAC-TTTACGTCACTCCAGTAGAAAGTA-ACGAAAA-----TGTTTTTtcactt
gi|3 : TTC-----AC-----AGTGCAAGATCAAATTTTTGGTCTCTCCGACAGAAAGTA-TTGAAAA-----AGTTTTT
gi|4 : gttcatAAAGGCAAAAC-TTCACTGTACAAACCAT-GTTTATACA-AA--AAAATGTAAACAAGCACT-GA-AA---ATA----CACCGCACAATGATTT-------------CCTTAGTA---ACAG-A----------------C----TA---ATGAAGCGTCGG-CCGAGAAAACCATCATC-----T----TG-GCTCTCCAAATTTAAACAAAGTACGTATTCTA--TATTGA-TCAAGTTTGGGAA--CATAAGATGaaagtctaaaccctacttcgcacaaaaatataaaatgtattaaaaaaaaatgctacgtgatttcatttaataaaaggtttaaactacattttaacttaataccaaaacatgctgcattatattttttgcaactgacaagtaaaacatgtagatctac
gi|6 : atgcagAACTAAAATGTGTA--TTT--TATTGA-TCAAATTTGAAAA--CA--AGATTGGGTT-ACAATAAATCTTGAT-ACG-AAAGATATGTATAGACTGCATGTATGTAG-GCC-TAATGTTTATTTCAT-----ATTGCAAAATAGATTTTTAAATCGCTTCGACAAAAAGTATTGGAATA-----
gi|7 : aaA---ATG----GA------AATCACTTAAG--------AAC------------AG-A----------------C----TA---ATGAAGCGTCAA-CCAAGAGGACCGCAATC-----T----TG-GCTCTCC--G--------AAGTATGTA--CTTGTTTTTTA-TCAAGTCTGAAAA--CACAAGGTGGAGTTTGTAATGAATCTTGAT-GAG-Gt
gi|8 : T--A--------CGCTGCGC-A---A-GG-ATTCGCTA---------C----TACCCACGAATCGTCGAACTGCGAAGTCGGCCAT------T----TGCATTCTTC--GTATAACCGGAAGATGCA--ATT--TATTTA-TCAAATTTGCAAA--CA----GTGG--------------CT--AT---T-GAAAATATATGAAAGTTACA--ATTG--------TAATGTTT-----AC-----cgattgtaatttgaaatttagttttaca
gi|9 : AAAACTACTC-TACACTGTACAATTCTTC------ACATAA--AAA--GTAAACAAACACTTGAGAA---ACA----GA------A-TCACCT--GAGAAACAGCACAGC-TCA---A-AG-AT---------------TCGCTTA---GCGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTTTTC--ATATAtttgc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAACAGAAAGTACTGAAAAGATTTATAAACATCAAACCTGACATCAAAGAAAATCCTTCATATACTAGAAAATGTTGTTTGATTTTATAAAATATTTTAAAGTACATTGTTACTTACTATGACATGCAGAATTGTCGCCTATATAAATCCGACATAGTAAAATATG
Alignments
lowQualScore : 111 111 111111111111 777777777777777777777777777777777777777777777777777 1111111111 111 2222222 222222222222222 11111 11111 111 22222
lowQualScore : 1 6 2 0 4 66 111 77 4 5 111 222222222222 3 0 777777777777777777777777777777777777777777777777777 777 1 4 1 1111111111 4 66 0 888 22 111 66 1 5 66 3 555 7 5555555 666666666666666 44444 66666 0 33 22 0 666 55555
lowQualScore : . . . . . .. ... .. . . ... ............ . . ................................................... ... . . . .......... . .. . ... .. ... .. . . .. . ... . ....... ............... ..... ..... . .. .. . ... .....
lowQualScore : 0 7 2 1 4 11 777 00 4 3 000 444444444444 4 7 555555555555555555555555555555555555555555555555555 000 6 0 1 6666666666 4 11 9 111 44 444 99 0 0 99 9 444 4 6666666 777777777777777 33333 77777 2 55 00 2 888 00000
consensus : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATA----GA------AATCACTT--G--------CACCGCGCCA---A-AG-AT---------------C----TA---ACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CATAAGGTGGAGTTTGCAACGAATCTTGAT-AAC-G-AAGATATGTGTAGGCTACA--TATGTAG-A-C-TAATGTTT-----AC-----AGTGCAAGATCGACTTTTAAGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
Reference ( family-494 ) : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATA----GA------AATCACTT--G--------CACCGCGCCA---A-AG-AT---------------C----TA---ACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CATAAGGTGGAGTTTGCAACGAATCTTGAT-AAC-G-AAGATATGTGTAGGCTACA--TATGTAG-A-C-TAATGTTT-----AC-----AGTGCAAGATCGACTTTTAAGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
gi|1 : AAAACACCAAAAGTA-ATTGCAAAAGCCTTTGTTGATACA-AA--ATG--GAAAATG--CACC-GCAAA---ATG------------ATTCCCTTA-G--------CACCG-----------G-A----------------C----TA---ACGAAGCGTCA--------------CCATC-----T----TG-GCTCTTC--GCACAA---------------TT--TATTCA-TAACATTTGAAAA--CATAAGAAGGAGCTTGCAATAAATTTTGAT-AACAG-AAGATATGTGTAGGCTAC-------TAGTA-C---ATGTTT-----ACTTCACAGCGCAAGATCTACTTTTGAGTCGCTCCGACAGAAAGTG-CGGAAAAGAAGTTGTTTT
gi|10 : ttacTATA-AA--AAT--ATGAACAA----T-GATAA---ATA----GA------A-TTACT---G--------CA--ACATCG---A-AA-GT---------------A----TA---A----AC-TC---CTGAAAAAGCCG---TA-----T----TG-GTTGTTT--TTGCAAACGGAGCTTATA--CTT--TATTTATTC---TTAGAAAATGTATGAGCTGGCTTTGGCAAC-AACCTTGAT-ctttctttttgtaatctaaacccgacatcacacaaactacagcatgcattaaaaatgctacataatttcaggggttttatctaataaaagactacattgtgacttataacatgctacattgttgcaaatataagtccgataagtaaaacagttctacacctac
gi|11 : CAAACC-TACACAGCACAAGTCTACGTTTAT-CA-AACAAAAT-GTACACAAACAAT-GAAAAT--ATACCGCGG------AATGATTT-------------CCTCGGCA---ATAG-A----------------C----TA---ACGAGGCATCGA-ACGAGAAATCCGCCATCTTGCGT----TG-GCTCTCC--ACAT--CTGAAt
gi|12 : gCAAGTCTTTGTTTATAAA-CA--AAA--GTAGATAAGCATT-GATAAATTATA----GA------AATCACTT--G--------CGCTGCG-CA---A-AG-ATTCACTTAGCAACATAC----CG---ACGAAGCGTCGA-CTGAtgaa
gi|13 : AATGACAAAAC-TACACTGTGCAAGTCTTCGTTTATACA-AA-------GTAAACAAACGCT-GAGAA---ATA----GA------AATCACAT--G--------CACCGCAC
gi|14 : tGTA---TT--TAT-GA-TTAGATTTCAAAA--TGCAAGGCGTAGTTTACAACGAATCTTAA--AAC-A-AAAAAATGTGTAGGCTGCA--TACGAAG-A-C-TAATATTT-----ggttactcacttagcaa
gi|15 : AAGATGGAGTTTGCAACAAGTCTTAATAAAA-G-AAGATATTTGTAGACTACC--TTAGTAG-T-CATAATGTTT-----AC-----
gi|16 : a-AG-A----------------C----TG---CCGAGGCGTCGA-CCGAGAAAACCGCCACC-----TCAAATG-GCTATCC--ttc
gi|17 : acTCTTTGTTT---TA-AA--AAT--GTAAATA----CT-GATAA---TTA----GA------AATTATTT--G--------CACCTTG-CA---A-AG-AT---------------acaaaagatggagttt
gi|2 : AAAAGACCAAAC-TACACTGTCGAAGTCTTCTTTTATACA-AA--AAA--GTAAACAAACACT-GATAA---ATA----GA------AATAACTT--G--------CAGTGCACCACACA-AGCATT--------------C----TA---ACGAAGC-TTGA-CCTAGAAAACCGCCATC-----T----TG-GCTCTTC--GTATAACTGAAGCATGTA--CTT--TATTGA-TCAAATTTGAAAA--TATAAGGTGGTGCTTGCAACAAATCTTGAT-TA---------ATGTGTAGGCTACA--TATGTAG-A-CTTAATGTTT-----AC-----AGTGCAAGACCGAC-TTTACGTCACTCCAGTAGAAAGTA-ACGAAAA-----TGTTTTTtcactt
gi|3 : TTC-----AC-----AGTGCAAGATCAAATTTTTGGTCTCTCCGACAGAAAGTA-TTGAAAA-----AGTTTTT
gi|4 : gttcatAAAGGCAAAAC-TTCACTGTACAAACCAT-GTTTATACA-AA--AAAATGTAAACAAGCACT-GA-AA---ATA----CACCGCACAATGATTT-------------CCTTAGTA---ACAG-A----------------C----TA---ATGAAGCGTCGG-CCGAGAAAACCATCATC-----T----TG-GCTCTCCAAATTTAAACAAAGTACGTATTCTA--TATTGA-TCAAGTTTGGGAA--CATAAGATGaaagtctaaaccctacttcgcacaaaaatataaaatgtattaaaaaaaaatgctacgtgatttcatttaataaaaggtttaaactacattttaacttaataccaaaacatgctgcattatattttttgcaactgacaagtaaaacatgtagatctac
gi|6 : atgcagAACTAAAATGTGTA--TTT--TATTGA-TCAAATTTGAAAA--C--AAGATTGGG-TTACAATAAATCTTGAT--AC-GAAAGATATGTATAGACTGCATGTATGTAG-GCC-TAATGTTTATTTCAT-----ATTGCAAAATAGATTTTTAAATCGCTTCGACAAAAAGTATTGGAATA-----
gi|7 : aaA---ATG----GA------AATCACTTAAG--------AAC------------AG-A----------------C----TA---ATGAAGCGTCAA-CCAAGAGGACCGCAATC-----T----TG-GCTCTCC--G--------AAGTATGTA--CTTGTTTTTTA-TCAAGTCTGAAAA--CACAAGGTGGAGTTTGTAATGAATCTTGAT-GAt
gi|8 : T--A--------CGCTGCGC-A---A-GG-ATTCGCTA---------C----TACCCACGAATCGTCGAACTGCGAAGTCGGCCAT------T----TGCATTCTTC--GTATAACCGGAAGATGCA--ATT--TATTTA-TCAAATTTGCAAA--CA----GTGG--------------CT--AT---T-G-AAAATATATGAAAGTTACA--ATTG--------TAATGTTT-----AC-----ggcgattgtaatttgaaatttagttttaca
gi|9 : AAAACTACTC-TACACTGTACAATTCTTC------ACATAA--AAA--GTAAACAAACACTTGAGAA---ACA----GA------A-TCACCT--GAGAAACAGCACAGC-TCA---A-AG-AT---------------TCGCTTA---GCGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTTTTC--ATATAtttgc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAACAGAAAGTACTGAAAAGATTTATAAACATCAAACCTGACATCAAAGAAAATCCTTCATATACTAGAAAATGTTGTTTGATTTTATAAAATATTTTAAAGTACATTGTTACTTACTATGACATGCAGAATTGTCGCCTATATAAATCCGACATAGTAAAATATG
Alignments
lowQualScore : 111 111 111111111111 777777777777777777777777777777777777777777777777777 1111111111 111 2222222 222222222222222 11111 11111 111 22222
lowQualScore : 1 6 2 0 4 66 111 77 4 5 111 222222222222 3 0 777777777777777777777777777777777777777777777777777 777 1 4 1 1111111111 4 66 0 888 22 111 66 1 5 66 3 555 7 5555555 666666666666666 44444 66666 0 33 22 0 666 55555
lowQualScore : . . . . . .. ... .. . . ... ............ . . ................................................... ... . . . .......... . .. . ... .. ... .. . . .. . ... . ....... ............... ..... ..... . .. .. . ... .....
lowQualScore : 0 7 2 1 4 11 777 00 4 3 000 444444444444 4 7 555555555555555555555555555555555555555555555555555 000 6 0 1 6666666666 4 11 9 111 44 444 99 0 0 99 9 444 4 6666666 777777777777777 33333 77777 2 55 00 2 888 00000
consensus : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATA----GA------AATCACTT--G--------CACCGCGCCA---A-AG-AT---------------C----TA---ACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CATAAGGTGGAGTTTGCAACGAATCTTGAT-AAC-G-AAGATATGTGTAGGCTACA--TATGTAG-A-C-TAATGTTT-----AC-----AGTGCAAGATCGACTTTTAAGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
Reference ( family-494 ) : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATA----GA------AATCACTT--G--------CACCGCGCCA---A-AG-AT---------------C----TA---ACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CATAAGGTGGAGTTTGCAACGAATCTTGAT-AAC-G-AAGATATGTGTAGGCTACA--TATGTAG-A-C-TAATGTTT-----AC-----AGTGCAAGATCGACTTTTAAGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
gi|1 : AAAACACCAAAAGTA-ATTGCAAAAGCCTTTGTTGATACA-AA--ATG--GAAAATG--CACC-GCAAA---ATG------------ATTCCCTTA-G--------CACCG-----------G-A----------------C----TA---ACGAAGCGTCA--------------CCATC-----T----TG-GCTCTTC--GCACAA---------------TT--TATTCA-TAACATTTGAAAA--CATAAGAAGGAGCTTGCAATAAATTTTGAT-AACAG-AAGATATGTGTAGGCTAC-------TAGTA-C---ATGTTT-----ACTTCACAGCGCAAGATCTACTTTTGAGTCGCTCCGACAGAAAGTG-CGGAAAAGAAGTTGTTTT
gi|10 : ttacTATA-AA--AAT--ATGAACAA----T-GATAA---ATA----GA------A-TTACT---G--------CA--ACATCG---A-AA-GT---------------A----TA---A----AC-TC---CTGAAAAAGCCG---TA-----T----TG-GTTGTTT--TTGCAAACGGAGCTTATA--CTT--TATTTATTC---TTAGAAAATGTATGAGCTGGCTTTGGCAAC-AACCTTGAT-ctttctttttgtaatctaaacccgacatcacacaaactacagcatgcattaaaaatgctacataatttcaggggttttatctaataaaagactacattgtgacttataacatgctacattgttgcaaatataagtccgataagtaaaacagttctacacctac
gi|11 : CAAACC-TACACAGCACAAGTCTACGTTTAT-CA-AACAAAAT-GTACACAAACAAT-GAAAAT--ATACCGCGG------AATGATTT-------------CCTCGGCA---ATAG-A----------------C----TA---ACGAGGCATCGA-ACGAGAAATCCGCCATCTTGCGT----TG-GCTCTCC--ACAT--CTGAAt
gi|12 : gCAAGTCTTTGTTTATAAA-CA--AAA--GTAGATAAGCATT-GATAAATTATA----GA------AATCACTT--G--------CGCTGCG-CA---A-AG-ATTCACTTAGCAACATAC----CG---ACGAAGCGTCGA-CTGAtgaa
gi|13 : AATGACAAAAC-TACACTGTGCAAGTCTTCGTTTATACA-AA-------GTAAACAAACGCT-GAGAA---ATA----GA------AATCACAT--G--------CACCGCAC
gi|14 : tGTA---TT--TAT-GA-TTAGATTTCAAAA--TGCAAGGCGTAGTTTACAACGAATCTTAA--AAC-A-AAAAAATGTGTAGGCTGCA--TACGAAG-A-C-TAATATTT-----ggttactcacttagcaa
gi|15 : AAGATGGAGTTTGCAACAAGTCTTAATAAAA-G-AAGATATTTGTAGACTACC--TTAGTAG-T-CATAATGTTT-----AC-----
gi|16 : a-AG-A----------------C----TG---CCGAGGCGTCGA-CCGAGAAAACCGCCACC-----TCAAATG-GCTATCC--ttc
gi|17 : acTCTTTGTTT---TA-AA--AAT--GTAAATA----CT-GATAA---TTA----GA------AATTATTT--G--------CACCTTG-CA---A-AG-AT---------------acaaaagatggagttt
gi|2 : AAAAGACCAAAC-TACACTGTCGAAGTCTTCTTTTATACA-AA--AAA--GTAAACAAACACT-GATAA---ATA----GA------AATAACTT--G--------CAGTGCACCACACA-AGCATT--------------C----TA---ACGAAGC-TTGA-CCTAGAAAACCGCCATC-----T----TG-GCTCTTC--GTATAACTGAAGCATGTA--CTT--TATTGA-TCAAATTTGAAAA--TATAAGGTGGTGCTTGCAACAAATCTTGAT-TA---------ATGTGTAGGCTACA--TATGTAG-A-CTTAATGTTT-----AC-----AGTGCAAGACCGAC-TTTACGTCACTCCAGTAGAAAGTA-ACGAAAA-----TGTTTTTtcactt
gi|3 : TTC-----AC-----AGTGCAAGATCAAATTTTTGGTCTCTCCGACAGAAAGTA-TTGAAAA-----AGTTTTT
gi|4 : gttcatAAAGGCAAAAC-TTCACTGTACAAACCAT-GTTTATACA-AA--AAAATGTAAACAAGCACT-GA-AA---ATA----CACCGCACAATGATTT-------------CCTTAGTA---ACAG-A----------------C----TA---ATGAAGCGTCGG-CCGAGAAAACCATCATC-----T----TG-GCTCTCCAAATTTAAACAAAGTACGTATTCTA--TATTGA-TCAAGTTTGGGAA--CATAAGATGaaagtctaaaccctacttcgcacaaaaatataaaatgtattaaaaaaaaatgctacgtgatttcatttaataaaaggtttaaactacattttaacttaataccaaaacatgctgcattatattttttgcaactgacaagtaaaacatgtagatctac
gi|6 : atgcagAACTAAAATGTGTA--TTT--TATTGA-TCAAATTTGAAAA--C--AAGATTGGG-TTACAATAAATCTTGAT--AC-GAAAGATATGTATAGACTGCATGTATGTAG-GCC-TAATGTTTATTTCAT-----ATTGCAAAATAGATTTTTAAATCGCTTCGACAAAAAGTATTGGAATA-----
gi|7 : aaA---ATG----GA------AATCACTTAAG--------AAC------------AG-A----------------C----TA---ATGAAGCGTCAA-CCAAGAGGACCGCAATC-----T----TG-GCTCTCC--G--------AAGTATGTA--CTTGTTTTTTA-TCAAGTCTGAAAA--CACAAGGTGGAGTTTGTAATGAATCTTGAT-GAt
gi|8 : T--A--------CGCTGCGC-A---A-GG-ATTCGCTA---------C----TACCCACGAATCGTCGAACTGCGAAGTCGGCCAT------T----TGCATTCTTC--GTATAACCGGAAGATGCA--ATT--TATTTA-TCAAATTTGCAAA--CA----GTGG--------------CT--AT---T-G-AAAATATATGAAAGTTACA--ATTG--------TAATGTTT-----AC-----ggcgattgtaatttgaaatttagttttaca
gi|9 : AAAACTACTC-TACACTGTACAATTCTTC------ACATAA--AAA--GTAAACAAACACTTGAGAA---ACA----GA------A-TCACCT--GAGAAACAGCACAGC-TCA---A-AG-AT---------------TCGCTTA---GCGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTTTTC--ATATAtttgc
blockSeqs : A . C T CA AAT AA T T ATT CACCGCAC A GCGCTGCGCAAAGATTCACTTAGCAACATAC CCC A A G TTGCGT C AA ACG CT TTC GT T T TG T CTT G AAAAG ATGTATGTAGGCC ATTTC . AT AC TTG .
blockSeqs : A . T . . AT AG . A T CCGCGG A GAGAAACAGCACAGCTCAAAGATTCGCT . G . T TCAAA . . CTG CA C . G . . C AGT A AACA CTTAGTAGTCA . . TT TG AC .
blockSeqs : C . C . . T AA . T . GA A GCAGTGCACCACACAAGCATTC . G . A T . . CTG TA C . G . . T AGT A ACGA ATATGTAGACT . . C AA TT .
blockSeqs : A . T . . A AA . G . GA A ACGCTGCGCAAGGATTCGCTAC . G . A T . . ACA TG T . G . . T TGC A TA ATACGAAGAC . .
blockSeqs : T . C . . T AG . T . GA A GCAACATCGAAAGTA . G . A T . . CTA TA C . G . . C AGT G TG AATTG . .
blockSeqs : C . . A AA . T . GA A CCTCGGCAATAGAC . G . A T . . CCG GA A . T . . . GG . .
blockSeqs : . . . A A . G . GA A CCTTAGTAACAGAC . G . T T . . . . . T . . . . .
blockSeqs : . . . . . . . GA . AAGAACAGAC . . . A T . .
blockSeqs : . GA . . . .
blockSeqCons : AA GA********** CCG TA C** ANA**** ATNCGTAGNC***** *****
originalCons : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATA----GA------AATCACTT--G--------CACCGCGCCA---A-AG-AT---------------C----TA---ACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CATAAGGTGGAGTTTGCAACGAATCTTGAT-AAC-G-AAGATATGTGTAGGCTACA--TATGTAG-A-C-TAATGTTT-----AC-----AGTGCAAGATCGACTTTTAAGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
finalCons : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATAGA----------AATCACTT--G--------CACCGCGCCA---A-AG-AT---------------C----TA---ACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTAC--TT--TATTNA-TCAAATTTGAAAA--CATAAGGTGGAGTTTGCAACGAATCTTGATANA----AAGATATGTGTAGGCTACATNCGTAGNC-----TAATGTTT-----AC-----AGTGCAAGATCGACTTTTAAGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAACAGAAAGTACTGAAAAGATTTATAAACATCAAACCTGACATCAAAGAAAATCCTTCATATACTAGAAAATGTTGTTTGATTTTATAAAATATTTTAAAGTACATTGTTACTTACTATGACATGCAGAATTGTCGCCTATATAAATCCGACATAGTAAAATATG
Alignments
lowQualScore : 111 111 111111111111 777777777777777777777777777777777777777777777777777 1111111111 111 22222222 33333333333333 11111 11111 111 22222
lowQualScore : 1 6 2 0 4 66 111 77 4 5 111 222222222222 3 0 777777777777777777777777777777777777777777777777777 777 1 4 1 1111111111 4 66 0 888 22 111 66 1 5 66 3 555 7 33333333 5 66666666666666 6 44444 66666 0 33 22 0 666 55555
lowQualScore : . . . . . .. ... .. . . ... ............ . . ................................................... ... . . . .......... . .. . ... .. ... .. . . .. . ... . ........ . .............. . ..... ..... . .. .. . ... .....
lowQualScore : 0 7 2 1 4 11 777 00 4 3 000 444444444444 4 7 555555555555555555555555555555555555555555555555555 000 6 0 1 6666666666 4 11 9 111 44 444 99 0 0 99 9 444 4 00000000 2 33333333333333 7 33333 77777 2 55 00 2 888 00000
consensus : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATA----GA------AATCACTT--G--------CACCGCGCCA---A-AG-AT---------------C----TA---ACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CATAAGGTGGAGTTTGCAACGAATCTTGATA-N--A--AAGATATGTGTAGGCTACA--TATGTA-G-C-TA-ATGTTT-----AC-----AGTGCAAGATCGACTTTTAAGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
Reference ( family-494 ) : AAAAGACNAAAC-TACACTGTACAAGTCTTCGTTTATACA-AA--AAA--GTAAACAAACACT-GANAA---ATA----GA------AATCACTT--G--------CACCGCGCCA---A-AG-AT---------------C----TA---ACGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTCTCC--GTATAACCGAAGTATGTA--CTT--TATTNA-TCAAATTTGAAAA--CATAAGGTGGAGTTTGCAACGAATCTTGATA-N--A--AAGATATGTGTAGGCTACA--TNCGTA-GNC-TA-ATGTTT-----AC-----AGTGCAAGATCGACTTTTAAGTCGCTCCGACAGAAAGTA-CGGAAAA-----TGTTTTT
gi|1 : AAAACACCAAAAGTA-ATTGCAAAAGCCTTTGTTGATACA-AA--ATG--GAAAATG--CACC-GCAAA---ATG------------ATTCCCTTA-G--------CACCG-----------G-A----------------C----TA---ACGAAGCGTCA--------------CCATC-----T----TG-GCTCTTC--GCACAA---------------TT--TATTCA-TAACATTTGAAAA--CATAAGAAGGAGCTTGCAATAAATTTTGATA-ACAG--AAGATATGTGTAGGCTAC-------TA-G---TACATGTTT-----ACTTCACAGCGCAAGATCTACTTTTGAGTCGCTCCGACAGAAAGTG-CGGAAAAGAAGTTGTTTT
gi|10 : ttacTATA-AA--AAT--ATGAACAA----T-GATAA---ATA----GA------A-TTACT---G--------CA--ACATCG---A-AA-GT---------------A----TA---A----AC-TC---CTGAAAAAGCCG---TA-----T----TG-GTTGTTT--TTGCAAACGGAGCTTATA--CTT--TATTTATTC---TTAGAAAATGTATGAGCTGGCTTTGGCAAC-AACCTTGATctttctttttgtaatctaaacccgacatcacacaaactacagcatgcattaaaaatgctacataatttcaggggttttatctaataaaagactacattgtgacttataacatgctacattgttgcaaatataagtccgataagtaaaacagttctacacctac
gi|11 : CAAACC-TACACAGCACAAGTCTACGTTTAT-CA-AACAAAAT-GTACACAAACAAT-GAAAAT--ATACCGCGG------AATGATTT-------------CCTCGGCA---ATAG-A----------------C----TA---ACGAGGCATCGA-ACGAGAAATCCGCCATCTTGCGT----TG-GCTCTCC--ACAT--CTGAAt
gi|12 : gCAAGTCTTTGTTTATAAA-CA--AAA--GTAGATAAGCATT-GATAAATTATA----GA------AATCACTT--G--------CGCTGCG-CA---A-AG-ATTCACTTAGCAACATAC----CG---ACGAAGCGTCGA-CTGAtgaa
gi|13 : AATGACAAAAC-TACACTGTGCAAGTCTTCGTTTATACA-AA-------GTAAACAAACGCT-GAGAA---ATA----GA------AATCACAT--G--------CACCGCAC
gi|14 : tGTA---TT--TAT-GA-TTAGATTTCAAAA--TGCAAGGCGTAGTTTACAACGAATCTTAAAA-C--A--AAAAAATGTGTAGGCTGCA--TACGAA-GAC-TA-ATATTT-----ggttactcacttagcaa
gi|15 : AAGATGGAGTTTGCAACAAGTCTTAATA-A--AAGAAGATATTTGTAGACTACC--TTAGTA-GTCATA-ATGTTT-----AC-----
gi|16 : a-AG-A----------------C----TG---CCGAGGCGTCGA-CCGAGAAAACCGCCACC-----TCAAATG-GCTATCC--ttc
gi|17 : acTCTTTGTTT---TA-AA--AAT--GTAAATA----CT-GATAA---TTA----GA------AATTATTT--G--------CACCTTG-CA---A-AG-AT---------------acaaaagatggagttt
gi|2 : AAAAGACCAAAC-TACACTGTCGAAGTCTTCTTTTATACA-AA--AAA--GTAAACAAACACT-GATAA---ATA----GA------AATAACTT--G--------CAGTGCACCACACA-AGCATT--------------C----TA---ACGAAGC-TTGA-CCTAGAAAACCGCCATC-----T----TG-GCTCTTC--GTATAACTGAAGCATGTA--CTT--TATTGA-TCAAATTTGAAAA--TATAAGGTGGTGCTTGCAACAAATCTTGAT--T--A-------ATGTGTAGGCTACA--TATGTA-GACTTA-ATGTTT-----AC-----AGTGCAAGACCGAC-TTTACGTCACTCCAGTAGAAAGTA-ACGAAAA-----TGTTTTTtcactt
gi|3 : TTC-----AC-----AGTGCAAGATCAAATTTTTGGTCTCTCCGACAGAAAGTA-TTGAAAA-----AGTTTTT
gi|4 : gttcatAAAGGCAAAAC-TTCACTGTACAAACCAT-GTTTATACA-AA--AAAATGTAAACAAGCACT-GA-AA---ATA----CACCGCACAATGATTT-------------CCTTAGTA---ACAG-A----------------C----TA---ATGAAGCGTCGG-CCGAGAAAACCATCATC-----T----TG-GCTCTCCAAATTTAAACAAAGTACGTATTCTA--TATTGA-TCAAGTTTGGGAA--CATAAGATGaaagtctaaaccctacttcgcacaaaaatataaaatgtattaaaaaaaaatgctacgtgatttcatttaataaaaggtttaaactacattttaacttaataccaaaacatgctgcattatattttttgcaactgacaagtaaaacatgtagatctac
gi|6 : atgcagAACTAAAATGTGTA--TTT--TATTGA-TCAAATTTGAAAA--C--AAGATTGGG-TTACAATAAATCTTGATACG--A--AAGATATGTATAGACTGCATGTATGTAGGCC-TA-ATGTTTATTTCAT-----ATTGCAAAATAGATTTTTAAATCGCTTCGACAAAAAGTATTGGAATA-----
gi|7 : aaA---ATG----GA------AATCACTTAAG--------AAC------------AG-A----------------C----TA---ATGAAGCGTCAA-CCAAGAGGACCGCAATC-----T----TG-GCTCTCC--G--------AAGTATGTA--CTTGTTTTTTA-TCAAGTCTGAAAA--CACAAGGTGGAGTTTGTAATGAATCTTGATt
gi|8 : T--A--------CGCTGCGC-A---A-GG-ATTCGCTA---------C----TACCCACGAATCGTCGAACTGCGAAGTCGGCCAT------T----TGCATTCTTC--GTATAACCGGAAGATGCA--ATT--TATTTA-TCAAATTTGCAAA--CA----GTGG--------------CT--ATT-G--A--AA-ATATATGAAAGTTACA--ATTG-------TA-ATGTTT-----AC-----gaggcgattgtaatttgaaatttagttttaca
gi|9 : AAAACTACTC-TACACTGTACAATTCTTC------ACATAA--AAA--GTAAACAAACACTTGAGAA---ACA----GA------A-TCACCT--GAGAAACAGCACAGC-TCA---A-AG-AT---------------TCGCTTA---GCGAAGCGTCGA-CCGAGAAAACCGCCATC-----T----TG-GCTTTTC--ATATAtttgc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAACAGAAAGTACTGAAAAGATTTATAAACATCAAACCTGACATCAAAGAAAATCCTTCATATACTAGAAAATGTTGTTTGATTTTATAAAATATTTTAAAGTACATTGTTACTTACTATGACATGCAGAATTGTCGCCTATATAAATCCGACATAGTAAAATATG