lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 1 1 3333333333333333 222222 11 7777777777 1111 111 1 111 1111 11 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 11 777777777777777777777777777777777777 333333 22222 11 1111 22 111 1 3333333333 111 22222 1 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333333 11111111 888888888888888888888888 222 22222 1 11 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 0 5 777 6 3 0 5 9999999999999999 7 222222 00 3333333333 4444 111 3 222 7777 33 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 2 11 555555555555555555555555555555555555 000000 6 5 77 5 77777 00 0 1111 11 4 2 666 0 5 5 5 5 2222222222 5 5 000 88888 2 3 8888 8 6 8 11 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 2 66 000000000 66666666 333333333333333333333333 333 8 99 88 66666 6 0 77 8 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : . . ... . . . . ................ . ...... .. .......... .... ... . ... .... .. ............................................................................................................................................................................................................................................................................... ... . .. .................................... ...... . . .. . ..... .. . .... .. . . ... . . . . . .......... . . ... ..... . . .... . . . .. ...................................................................................................... . . .. ......... ........ ........................ ... . .. .. ..... . . .. . ...........................................................................................
lowQualScore : 0 0 444 6 6 1 0 1111111111111111 0 000000 77 8888888888 2222 777 2 444 0000 88 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 000 0 00 222222222222222222222222222222222222 888888 7 7 99 7 44444 00 4 2222 77 2 4 444 5 0 0 7 0 2222222222 7 7 000 77777 2 7 7777 0 8 0 00 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 2 99 555555555 66666666 888888888888888888888888 444 0 00 22 55555 5 0 33 3 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
consensus : NNNCTG-GGCCAAAA-T--AAAAATATTGTTTGT-TTCCCCTCGC----C----CGA----GTCTGAGAAAGTCCCGCCG-----ACCCAAAA-NTTTTTATTCC----GTC----ATTT---TGGCAAAGTT--TTT----TTT--TT---------TNA-TCCGGAAAATTT------CCAGNNCGGGATCGGTANTT-TATANTGACCGGAAGT-TTCA-TNTTG-TNTTTGCTTT-GATCTAAATTCAAGAGATAATA-GGAAAGAGGTGGTCTGCTAGNTCGGCNTACGNAGAAANGTGCGCCTNCNNGGTTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAATTTCTA-----TTCA-A-ATGAAAACA--GAT------------A-----C-----C--A-ATA--T-TGTGTGT------CA-TCCCGC-CA--AAT-CG---G-TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTNAGACTCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG-CTTCGCCCCT---GCTGTGGAC---CGAATTGGCCAC-GA-AGTCGC-CATCTTGGCATT-T--GTAAA---CATA---------T----GCGAAA-ATCCGA-----ATCNCGAT-C----------TGTA-AA--------C--T----A-AAAT---AT-AC-A--TGAATGGACAAAA--ACCT-AGNCG--GACAAANA-G-ACTGATTGCTATATGTTTTCAA---TCGGT---CCTTCATTAAAAATGACCG--GCAGGA-CCACCCATTTTCGACATGCCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-ATN-AATAAAATTCCGCTGGCACCAAAGGG-------------AN------AA---ANAAACCTN-----TC--TACCTACCCTCCTCNAATATA--G-G--GG-----G-----AGAGGGGAAACAAACATA
Reference ( gi|1 ) : CTTCTG-GGCCAAAA-T--AAATATATTGTTTGT-TTCCCCTCGC----C----CGA----GTCTAAGAAAGTCCTGCCA-----ACCCAAAA-ATTTTTG---A----GTC----ATTT---TGGCGAAGTT--TTT----TTT--TT---------TGA-TCGGGAAAATGT------CCAGAGCGAGGTCAGTATTT-TATATTGACCAGAAGT-TTCAGTATTT-TATTTTTTTTGGATCCAAATTCAAGAAATAATACAAAAAGAGGTGGTTTGTGAGATTGATCT--GGAGAAAAGT-CATCCACAGGATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTCA-A-ACGAAAACA--GAT------------A-----C-----C--A-AT---T-TGTGTGT------CA-TCCTGC-CA--AAT-TG---A-TCTG-GAAGGA-ATGGAATTTT-CAATGTTTTATTTTACACTCGTA-T-GATTAGACA-ATGAGCTAGCTTGCATATTTG-CACCAGG-CTTTGCCCCT---GCTGTGGAC---TGAAATGGCCAC-GA-AGTTGC-CATCTTGGTACT-T--GTAAA---C--G---------T----GCAAAA-ATTCAA-----ATCACAAT-C-----C----TGCA-AG--------C--T----A-AAGT---AT-AC-ACTTTAATGGACAAAA--ACCA-AGACA--GACAAATA-G-ACTGATTGCTGTATGTTTACAATGATCAAT---CCTTCATTAAAAATGACCT--ACAGGA-CTACCCATTTCTGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-ATT-AATTAAATTCTGCTGGCACCAAAAAA--------AAAAAAA------AA---AAAAACCTT-----TT--TACCTACCCTC-----------------GG-----G-----AGAGGGGAAACAAACATA
gi|25 : CTGAGGCCAAAAGT--AAA-ATATTGTTTGT-TTCCCCTCAC----
gi|9 : tgTG-GACCAAAA-T--TAAAATATTG----T-TTCCCCTTGCCCGAC----CGA----GTCTTAGAAAGTCCCGCCAATTTTACCCAAAT-CTTTTTATTCC----ATC----ATTTTTATAGC-AAATA--TTT----TTT--TT---------T---TCTGGAAAATTTCCGCTGCCAGATCGA--TCAGTATTT-CATAa
gi|2 : ccagcattat-GGCCAAAA-T--ATAAATATTGTTTGT-TTCCCCTCGC----CGAACCAA----GTCTGAGAAAGTCCCAGCG-----ACCCAAAA-CTTTTTATTCC----GTT----ATGT---TGGCAAAGTT--TTTATTTTTT--TT---------TAATTCTAG--AATTT------TCAGAAC-AGCTCGGAA--G-AAAACTGACCAGGAGTGTTCA-TCTTTGTGTTGGTTTT-GATCT--ATT--AGAG-------GAAAAGAGATGGTCTGCTAGATCGGCAT--GAAGAAATGT-CATCTTCTGGATTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAATTTCTA------TCA-A-ACAAAAAAAAGGATACATAACCACTTA-----C-----C--A-GT---G-TGTGTGTATATTAAA-TCTTGC-CA--AAT-CG---G-TCTG-GAAGAA-ACAGACTTTA-CAATGTTTTACTTTA-ACTTGTA-T-GATTAAGCA-ATG----AGCTTGTGT-TTTG-CATGTGG-TTTTGCCCCT---GCTGTAGTC---C-AAATGACCAC-AA-AGTTGC-CATCTTGGTTCT-T--GTAAA---CATA---------T----GCGAAA-ATCTGA-----ATGACGAT-CTCGATT----TGTA-AT--------C--T----A-AA----------------AA-GGACTAAA--ACCT-AAATG--GAT-AATAGG-ACTGATTGC--TATGTTTTC---GATTGGT---CCTTCATTAAAAGTGACCG--ACA
gi|8 : aagcctgtacagaaaagtctggaaaactatatattca-GGCCAAAA-T--AAATTTAAAGTTTGT-TTCCTCTCGC----CATC-TGA----GTCTGAGAAAGTCTTGCCG-----ACCCAAAT-GTTTTTATTCA----GTC----ATTT---TGGCAAAGTTGGTTT----TTT--TTATAATCCCGTTA-TCCGGAAAATTT------CCAGTGCTGGATCAATAATT-TATAATGACTGGAAGT-TTCAATATTG-TCGTTGCTTTCGATC
gi|14 : atttcatcattcaGCCAAAA-T--TAAAATATAGTTTGT-TTCCCCTTGCCCAAC----CGA----CTCTTAGGAAGTCCCACCG-----ACCCAAAA-GTTTTTATTCC----TTC----ATTT---CAGCAAAGTT--TTT----T
gi|7 : CCAAAA-T--CAGAATATT---TGTGTTCCAATCGT----C----CTACTTAGTCTGAGAAAG-CCTGCCT-----AC--AGAA-AGTTCTT---A----TTCCCTCATTT---TGGCCGAGCA--TAT----TTTAATT---------CCA-T------AATTT------GCAGTTGGGGATT-GTACTTCTA-AT--ACCGGAAGT-------GTTG-TATTTTC----GA---AAATTCAAGAAATAATA-AGAAA---GTGGTT-----GCTTGATCTACATAGAAAGATGCGCTTACATGGTTAGatgcttccggaatctttgattcgggggca
gi|18 : aAAA-TTAAAAAATATTGTTCAT-TTCCTCTCAC----C----CGACTGAGTCTGAGAAAGTCTTATTG-----ATCCAAAAGATTTT-----ATCCCGTC----ATTT---TGGCAA
gi|3 : -T--AAAAATAT-GTTTGT-TTCTCCTCCT----C----TGA----CCCTAA
gi|3 : ccagaagttcagtttgtgttggttttgatctaaaattaagaaatgcaagatcaacagggagagaaatgtcttctatagagttaggagtcaacacccgtcacccgtttctttattcagatttgctgcagcgatgtcaccaatttgtacacaagttctttcacaataaaatcagatacattaccgatatgtgtgtgtgtcataccaccaaatcggtctcgaagaaaaggaatttgccgtgctttctgacattatcattggacaataagcttgcgttttgcaccaggtgtcgctcctgtcatgggccaaatgaccatgaagtctccatctttgattctgtaaaatatggaaaaaaaatgcgaaatatccaaggacaatctcaatttgtaatctatgaacataagacctgaatggacataatcctaaacagacaataaaactgaatgcaatgttttcaattggtccttcataaaaattgactggcaggaccacccatttttgacatgtctgcaactaatgtcatgggaatttcataatgaataaaattctgctgacatgaaagggggggggggggaccaactcaaaaatttctctacctaccctcctgaaatTTCACA-ATAAAATCA--GAT------------A-----CATTACC--G-ATATGTGTGTGTGT------CA-TACCAC-CA--AAT-CG---G-TCTC-GAAGAA-AAGGAATTTG-CCGTGCTTT--CTGACATT---A-T-CATTGGACA-ATAAGCT----TGCGT-TTTG-CACCAGG-TGTCGCTCCT---GTCATGGGC---C-AAATGACCAT-GA-AGTCTC-CATCTTTG-ATTCT--GTAAAATAT--GGAAAAAAAAT----GCGAAATATCCAAGGACAATCTCAAT-T----------TGTA-AT--------C--T----ATGAAC---AT-AAGACCTGAATGGACATAA--TCCT-AAACA--GACAATAA-A-ACTGAATGCA--ATGTTTTCAAT---TGGT---CCTTCATAAAAATTGACTG--GCAGGA-CCACCCATTTTTGACATGTCTGCAA-----CTAAT-GTCATGGGAATTTCATAATG-AATAAAATTCTGCTGACATGAAAGGG--------GGGGGGGGGGACCAACTCAAAAATTTC-----TC--TACCTACCCTCCTGAAATTTA-------GG-----GTCAGAGGAGGAGAAACAAACATAgatat
gi|4 : ccagaagttcagtttgtgttggttttgatctaaaattaagaaatgcaagatcaacagggagagaaatgtcttctatagagttaggagtcaacacccgtcacccgtttctttattcagatttgctgcagcgatgtcaccaatttgtacacaagttctTCA-ACATGAGAACA--GAT------------A-----C-----CTCA-CTA--T-TGCGTGTGAG---CAATCCTGC-CACGAATCTGCGTA-TC-G-GAAGAACACAAAATTAAACAATGTTTTATCAAGCATT-GTAATAGATTAGATACATGAACTTGCTT---TAATGA-CACCAGAACATTCCACCTCTTACTGTGCACACCCAAATTGGCCACCGACGGTCGCATGTCTTG-TACT-TCTGTAAA---C--A---------TTGCCGCAAAA-AATCTA-----ATC-----------------TACATAA--------T--T----A-CGTT---AC-AC-AA---AATGGACAATT--CCCA--GCCATGGACAAGAG-G-AGTTATTGCTGT---TTCTCGA--ATTGGT---CTTTCATTAAAAATGAACGGAGCAGGA-CCA-ACATTTtttttagatat
gi|15 : tttacccaagtttctgaTCA-A-ATGAAAACA--GAT------------ATACCTC-----C--T-AT---T-TGTGTGT------TA-GCTTGC-CC--CAT-TGGACA-TCT----------T-GCATTTA-CAATGATTTATTTAAGACTTGTA-T-GTTTAGACA-ATAAGCTtgtattttcatgatgtcaagaggaac
gi|24 : acacaagttctaA--GAC------------A-----C-----T--ATATAG-T-TGTGTGT------CA-TCTCGC-CA--AAT-TG---G-TCTG-GAAAGA-tg
gi|5 : ------------A-----C-----T--A-AT---T-TGTGCAT------CA-TATCAC-CA--AAC-TG---G-GCTG-GAAGGA-CTGAAATTTA-TAATGAGTTAATC-AGACTCGTA-T-GTTTAGACA-ATGAGCT----TGCAT-TTTG-CACCAGG-CTTCACCCCT---GCTGTGGAA---CCAATTGTCCTT-GA-AGTTGT-CATCTTGGCATT-T--GTAAA---C--A---------T----TCGAAA-ATCTAA-----ATCACGATGC-----CAATTTGTA-AAAAAAAAATC--T----ACAAATGA-ATGAC-A--TGATTGGACAAAATTATT---GTCA--GAC-AATAGG-ACAGACTGCTTTCTGTTTTCA
gi|20 : tcCTGCACA--GAT-CG---GGTCTTTGAAGGA-ACGGAATTTA-CAATGTCGTAATGTA-ACTCGTA-T-GAT
gi|12 : tctATTTA-CAATGCCTTATTTCAGACCTGTA-T-GATTAGACA-ATGAGCT----TGCA-ATTTG-CACCAGG-CTTTGTTCCT---GCTGTGGAC---CGAATTGGTCAC-
gi|19 : agactct-CAGTGGTGTATTTTAGACTTGTA-T-GATTAAACA-ATG----AGCTTGCAT-TTTG-CACCAGA-CTTTGCCCCT---GCTATGGacgtacgattacttgtattaaaacatatatgcagat
gi|10 : cctgaATTTGGCACCAGG-ATTCACCTGT---GCTGTGGAC---TGAG-------------GTTGC-CATCTTGGCATT-T--GTAAA---CATG---------T----GCAAAA-ATCCAA-----ATCCTGAT-C-----A-----GTA-AA--------TAATCAAAA-AAGTACCAT-AC-A----GAAGGAC-AAA--ATCATAGTCG--TAC-AATAGG-ACAGATTGCTATgtcaagtga
gi|6 : agAATGGACGAAA--ACCCTAGGTG--GACAA-TA-GGACTGAGTACTA-------AC-----TCGCC---CGTTCATTAAAAATTACCG--AAAGGAGCT-CCCATTTTCGACATGTCTACAACTTTGCTAGTGGTCATGGGGATTTCAC-ATCGAATAAAATTCCGTTGGCACC-------------------AA------AA---ATAACCCTTACTACTTACTACATACCCTCCTCTTATATAATGTA--GGATCATG-----AGAGGGGAAACAAACAT
gi|17 : gacgggAATGGGTATTA--ACCT-GGTCA--GACAAAAG-G-ACTGATTGCAAAATTTTTTT-----TCAGTAGGTTTTAATTGCAAATGACCA--GCTGGA-CAACCCGTTTTCGACATGCCTgattttaaacatcg
gi|16 : gACAAAA--ACCT-AGTGG--GACAACAG-G-ACTCATTGCTATATGTTTTCAAT---CGGC---CCTTCATTAAAAATGACCA--GCAGAA-CCGCCCATTTTCAACATGCCT
gi|22 : caaatatatgaaggggatcaAATA-GGACTAGTTGCTCT---TTTTCAAC---CAAA---CCTTCATTCAAAATGACCG--ACA
gi|11 : CTAATAGTCATGGGAATTTCAT-AT
gi|13 : AATGGTCATGGGAATTTGAT-ATT-CAATAAATTTTGCTGGCACCAAAAAATTTTTTTT-----AC------CA---ACCAACCTA-----CC--TACCTAGCCTCCTCCAAAATTTAAGGTCGG-----G-----AGAGGGGAAGCAATCATAggaagaaagtgccggcaaagtgccccccccctaattttttacctacatgtacctacctcatgccctcctcagaaatgtacagggttagaagatgggaaacaaacgtattcttaaatat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): ACCTACCCACCCTCCTCTGCAAATGTAGGCGTCGGAGAGGGCGGAAACAAACGAATCTTTAGAT
Unaligned ( gi|23 ): AAATTAAAAATTGTTGTTGTTTTCTCCTTCACCCGGACTGAGTCGAGAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444444444444 11111 111 1111 33333333333 222222 11111111 111 5555555555555555 4444444 2 77777777777777777777777777777777777777777777777777777777777777777777777777777 11 33333333 55555555555555555555555555555555555555 2222 2222 2222222222 3333333333 333333 111111 666666666666666666666666666666666666 11111 111 111111 222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 8 888 4 1 4 4 3333333333333333 44444 1 000 99 4444 99 44444444444 2222 333333 22 8 3 9 1 333 1 2 77777777 1 8 1 555 8 8 0 0 3 6 0000000000000000 2 0 2 6 1 1111111 1 1 3 11 1 22 0 00000000000000000000000000000000000000000000000000000000000000000000000000000 6 00 22222222 8 8 99 66666666666666666666666666666666666666 2222 5 66 4444 5 5 1 4 1 99 3 4 4 4 4 5 4 3333333333 5 888 5 888 1 77 1 8888 5 5 77 66 4 5 5 7777777777 5 5 3 555555 22 999999 6 6 111111111111111111111111111111111111 1 11111 5 4 1 66 000 4 555555 66 4 888 1 66 7 8 555 3 0 4 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 99
lowQualScore : . ... . . . . ................ ..... . ... .. .... .. ........... .... ...... .. . . . . ... . . ........ . . . ... . . . . . . ................ . . . . . ....... . . . .. . .. . ............................................................................. . .. ........ . . .. ...................................... .... . .. .... . . . . . .. . . . . . . . .......... . ... . ... . .. . .... . . .. .. . . . .......... . . . ...... .. ...... . . .................................... . ..... . . . .. ... . ...... .. . ... . .. . . ... . . . ................................................................................................................... ..
lowQualScore : 0 222 0 1 0 0 4444444444444444 33333 0 000 22 2222 22 22222222222 8888 000000 00 2 8 6 0 444 0 5 00000000 0 0 0 000 0 0 8 8 2 5 2222222222222222 5 2 5 5 0 0000000 0 0 3 33 0 00 7 55555555555555555555555555555555555555555555555555555555555555555555555555555 4 66 66666666 0 0 22 44444444444444444444444444444444444444 1111 7 99 4444 0 0 7 4 0 88 9 4 4 4 4 0 5 6666666666 0 888 0 888 1 99 7 9999 7 7 99 44 0 7 7 0000000000 7 7 3 888888 00 222222 7 7 555555555555555555555555555555555555 8 11111 1 4 0 11 444 0 555555 11 4 888 4 99 3 0 000 8 8 6 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22
consensus : NNNCTG-GGCCAAAAT--NAAAA-TATTGTTTGT-TTC-CCCTCGCC----C-----GA----GTCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----TTT--TT---------T-ATCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GTGTTNGTTTT-G-ATCTAAATTCAAGAAAT--------AATA-GGAAAGAGGTGGTCTGCTAGATCGGC-T--GNAGAAANGT-CGTCTACAGGATTAGGTNNNNNNNNN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACNCAA-NTTCTA-----TTCA-A-ACGAAAACA--GA------------TA-----C-----C--A-ATA-T---TGTGTGT----CA-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGTAAA-CAT---------ATGC-GAAA-ATCCAA------ATCNCG------ATC-TGTA-AN--------CTA-AAA-----T--AT-A---CA--TGAATGG-----ACAAAAACC-TAGNC--GGACAANAGG-ACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCATA-T-G-AATAAAATTCTGCTGGCACC-----AAAGAG--------AN-----------AA---ANAA------ACCT--NTCTACC-------TA-------CCCTCCT---C-----AAA----TGT---AGG---GTC-GGAGAGG--GGAAACAAACATA
Reference ( family-492 ) : NNNCTG-GGCCAAAAT--AAAAA-TATTGTTTGT-TTC-CCCTCGCC----C-----GA----GTCTGAGAAAGTCCCGCCG-----ACCCAAAANTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----TTT--TT---------TNATCCGGAAAATTT------CCAGNNCGGGATCGGTANTTTATANTGACCGGAAGT-TTC-A-TNTT-GTNTTTGCTTT-G-ATCTAAATTCAAGAGAT--------AATA-GGAAAGAGGTGGTCTGCTAGNTCGGCNTACGNAGAAANGTGCGCCTNCNNGGTTAGGTNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAA-TTTCTA-----TTCA-A-ATGAAAACA--GA------------TA-----C-----C--A-ATA-T---TGTGTGT----CA-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTNAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGTAAA-CAT---------ATGC-GAAA-ATCCGA------ATCNCG------ATC-TGTA-AA--------CTA-AAA-----T--AT-A---CA--TGAATGG-----ACAAAAACC-TAGNC--GGACAAANAG-ACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGCCTGCAACTTTGCTAATGGTCATGGGAATTTCATA-T-N-AATAAAATTCCGCTGGCACC-----AAAGGG--------AN-----------AA---ANAA------ACCT--NTCTACC-------TA-------CCCTCCT---C-----NAA----TAT---AGG---G---GGAGAGG--GGAAACAAACATA
gi|1 : CTG-GGCCAAAAT--AAATA-TATTGTTTGT-TTC-CCCTCGCC----C-----GA----GTCTAAGAAAGTCCTGCCA-----ACCCAAAAATTTTTG---AGTCATTT---TGGCGAAGTT--TTT----TTT--TT---------TGATCGGGAAAATGT------CCAGAGCGAGGTCAGTATTTTATATTGACCAGAAGT-TTC-AGTATT-TTATTTTTTTT-GGATCCAAATTCAAGAAAT--------AATACAAAAAGAGGTGGTTTGTGAGATTGATCT--GGAGAAAAGT-CATCCACAGGATTAGNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNTGGTTCA-A-ACGAAAACA--GA------------TA-----C-----C--A-AT--T---TGTGTGT----CA-TCCTGCCA--AATTGA----TCTG-GAAGGA-ATGGAATTTT-CAATGTTTTATTTTACAC-TCGTA-T-GATTAGACA-ATGAGCTAGCTTGCATATTTG-CACCAGG---CTTTGCCCCT-GCTGTGGAC---TGAAATGGCCAC-GA-AGT-TGC-CAT--CTTG-GTACT-TGTAAA-CGT-----------GC-AAAA-ATTCAA------ATCACA------ATCCTGCA-AG--------CTA-AAG-----T--AT-A---CACTTTAATGG-----ACAAAAACC-AAGAC--AGACAAATAG-ACTGATTGCTGTATGTTTA--C-AATGATCAATCCTTCATTAAAAATGACCT--ACAGGACTACCCATTTCTGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCATA-T-T-AATTAAATTCTGCTGGCACCAAAAAAAAAAA--------AA-----------AA---AAAA------ACCT--TTTTACC-------TA-------CCCTC------------------------------G---GGAGAGG--GGAAACAAACATA
gi|10 : cttATTTGGCACCAGG---ATTCACCTGT-GCTGTGGAC---TGAG-------------GT-TGC-CAT--CTTG-GCATT-TGTAAA-CAT---------GTGC-AAAA-ATCCAA------ATCCTG------ATC-AGTA-AATAAT----CAA-AAAAGTACC--AT-A---CA---GAA-GG-----ACAAAATCA-TAGTC--GTACAATAGG-ACAGATTGCTAT
gi|11 : agCTAATAGTCATGGGAATTTCATA-TGG-AAGAAAGT---GCCGG---C-----AAAGTGCCCC----CC-----------CC---CTAATTTTTTACCTACATGTACC-------TACCTCATGCCCTCCT---C-----AGAAATGTAC---AGG---GTTAGAAGATG--GGAAACAAACGTA
gi|12 : ATTTA-CAATGCCTTATTTCAGAC-CTGTA-T-GATTAGACA-ATGAGCT----TGCA-ATTTG-CACCAGG---CTTTGTTCCT-GCTGTGGAC---CGAATTGGTCAC--A-CGTACG---ATTACTT--GTATT---AAAA-CAT---------ATAT-GCAG-ATttcttaaatat
gi|13 : agactctAATGGTCATGGGAATTTGATA-T-TCAATAAA-TTTTGCTGGCACC-----AAAAAATTTTTTTTAC-----------CA---ACCA------ACCT--ACCTACC-------TA-------GCCTCCT---C-----CAA----AATTTAAGGTC-G---GGAGAGG--GGAAGCAATCATA
gi|13 : T--GAAAA-TAT-GATTGC-TTC-CCCTCTCC----C-----GA----ttttcaaa
gi|14 : aatggtcatgggaatttgatattcaataaattttgctggcaccaaaaaattttttttaccaaccaacctacctacctagcctcctccaaaatttaaggGCCAAAAT--TAAAA-TATAGTTTGT-TTC-CCCTTGCC----CAACC-GA----CTCTTAGGAAGTCCCACCG-----ACCCAAAAGTTTTTATTCCTTCATTT---CAGCAAAGTT--TTT----TAT--GC---------T--TCCGGAAaa
gi|15 : ACACAA-GTTCTA-----T-CA-A-ATGAAAACA--GA------------TATACCTC-----C--T-AT--T---TGTGTGT----TA-GCTTGCCC--CATTGGACA-TCTT-G-------C---ATTTA-CAATGATTTATTTAAGAC-TTGTA-T-GTTTAGACA-ATAAGCT-tctttgattcgggggca
gi|16 : -AAA-----T--AT-A-------TGAAGGGGATCAACAAAAACC-TAGTG--GGACAACAGG-ACTCATTGCTATATGTTTT--C-AAT---CGGCCCTTCATTAAAAATGACCA--GCAGAACCGCCCATTTTCAACATGCCTtg
gi|17 : cGAATGG-----GTATTAACC-TGGTC--AGACAAAAGG-ACTGATTGCAAAATTTTTTTTC-AGT---AGGTT-TTAATTGCAAATGACCA--GCTGGACAACCCGTTTTCGACATGCCT
gi|18 : AAATTAAAAAA-TATTGTTCAT-TTC-CTCTCACC----C-----GACTGAGTCTGAGAAAGTCTTATTG-----ATCCAAAAGATTTTATCCCGTCATTT---TGGCAA
gi|19 : A-CAGTGGTGTATTTTAGAC-TTGTA-T-GATTAAACA-ATGA----GCTTGCAT-TTTG-CACCAGA---CTTTGCCCCT-GCTATGGGT---CAAGT
gi|2 : cctg-GGCCAAAAT--ATAAA-TATTGTTTGT-TTC-CCCTCGCCGAACC-----AA----GTCTGAGAAAGTCCCAGCG-----ACCCAAAACTTTTTATTCCGTTATGT---TGGCAAAGTT--TTTATTTTTT--TT---------TAATTCT-AGAATTT------TCAGAACAGC-TCGGAAGA--AAACTGACCAGGAGTGTTC-A-TCTTTGTGTTGGTTTT-G-ATCTA--TT--AGAG---------------GAAAAGAGATGGTCTGCTAGATCGGCAT--GAAGAAATGT-CATCTTCTGGATTAGGTNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAA-TTTCTA------TCA-A-ACAAAAAAAAGGATACATAACCACTTA-----C-----C--A-GTG-TG--TGTGTATATTAAA-TCTTGCCA--AATCGG----TCTG-GAAGAA-ACAGACTTTA-CAATGTTTTACTTTA-AC-TTGTA-T-GATTAAGCA-ATGA----GCTTGTGT-TTTG-CATGTGG---TTTTGCCCCT-GCTGTAGTC---CAAA-TGACCAC-AA-AGT-TGC-CAT--CTTG-GTTCT-TGTAAA-CAT---------ATGC-GAAA-ATCTGAATGACGATCTCG------ATT-TGTA-AT--------CTA-AAA--------A---------------GG-----ACTAAAACC-TAAAT--GGATAATAGG-ACTGATTGC--TATGTTTT--C-GAT---TGGTCCTTCATTAAAAGTGACCG--ACAga
gi|20 : aagcctgtacagaaaagtctggaaaactatatattcaCA--GATCGGG---TCTTTGAAGGA-ACGGAATTTA-CAATGTCGTAATGTA-AC-TCGTA-T-GAT
gi|21 : tctctgcaCTACC-------CA-------CCCTCCTCTGC-----AAA----TGT---AGGC--GTC-GGAGAGGGCGGAAACAAAC
gi|22 : acAATAGGACTAGTTGCTCT---TTTT--C-AAC---CAAACCTTCATTCAAAATGACCG--ACAgaatctttagat
gi|23 : AAATT--AAAAATTGTTGTTGTT-TTCTCCTTCACC----CGGACTGA----GTC-GAGAAA
gi|24 : A--GA------------CA-----C-----T--ATATAGT---TGTGTGT----CA-TCTCGCCA--AATTGG----TCTG-GAAAGA-
gi|25 : CTGAGGCCAAAAG--TAAAA-TATTGTTTGT-TTC-CCCTCAC
gi|3 : tgCCAGAAGT-T-C-A-GTTT-GTGTTGGTTTT-G-ATCTAAAATTAAGAAATGCAAGATCAACAGGGAGAGAAAT-GTCTTCTAa
gi|3 : TACACAA-GTTCT------TTCACA-ATAAAATCA--GA------------TA-----CATTACC--G-ATA-TGTGTGTGTGT----CA-TACCACCA--AATCGG----TCTC-GAAGAA-AAGGAATTTG-CCGTGCTTTCT----GACAT--TA-T-CATTGGACA-ATAAGCT----TGCGT-TTTG-CACCAGG---TGTCGCTCCT-GTCATGGGC---CAAAT-GACCAT-GA-AGT-CTC-CAT--CTTT-G-ATTCTGTAAAATATGGAAAAAAAATGC-GAAATATCCAAGGACA-ATCTCA------ATT-TGTA-AT--------CTATGAA-----C--AT-AAGACC--TGAATGG-----ACATAATCC-TAAAC--AGACAATAAA-ACTGAATGC-A-ATGTTTT--C-AAT---TGGTCCTTCATAAAAATTGACTG--GCAGGACCACCCATTTTTGACATGTCTGCAACT-----AATG-TCATGGGAATTTCATAAT-G-AATAAAATTCTGCTGACATG-----AAAGGG--------GGGGGGGGGGACCAACTCAAAA------ATTT--CTCTACC-------TA-------CCCTCCT---G-----AAA----TTT---AGG---GTCAGAGGAGG--AGAAACAAACATAtagagttaggagtcaacacccgtcacccgtttctttattcagatttgctgcagcgatgtcaccaatttgtacacaagttctttcacaataaaatcagatacattaccgatatgtgtgtgtgtcataccaccaaatcggtctcgaagaaaaggaatttgccgtgctttctgacattatcattggacaataagcttgcgttttgcaccaggtgtcgctcctgtcatgggccaaatgaccatgaagtctccatctttgattctgtaaaatatggaaaaaaaatgcgaaatatccaaggacaatctcaatttgtaatctatgaacataagacctgaatggacataatcctaaacagacaataaaactgaatgcaatgttttcaattggtccttcataaaaattgactggcaggaccacccatttttgacatgtctgcaactaatgtcatgggaatttcataatgaataaaattctgctgacatgaaagggggggggggggaccaactcaaaaatttctctacctaccctcctgaaatttagggtcagaggaggagaaacaaacatatttttagatat
gi|4 : ccagaagttcagtttgtgttggttttgatctaaaattaagaaatgcaagatcaacagggagagaaatgtcttctatagagttaggagtcaacacccgtcacccgtttctttattcagatttgctgcagcgatgtcaccaatttgTTTACCCAAGTTTCTG-----ATCA-ACATGAGAACA--GA------------TA-----C-----CTCA-CTA-T---TGCGTGTGAG-CAATCCTGCCACGAATCTGCGTATC-G-GAAGAACACAAAATTAAACAATGTTTTATC-AAGCA-TTGTAATAGATTAGATACATGAACTTGCTT---TAATGA-CACCAGAACATTCCACCTCTTACTGTGCACACCCAAATTGGCCACCGACGGT-CGCATGT--CTTGTACTTC-TGTAAA-CAT----------TGCCGCAA-A---AA------ATCT-A------ATC-TACATAA--------TTA-CGT-----T--AC-A---CA---AAATGG-----ACAATT-CC-CAGCCATGGACAAGAGG-AGTTATTGCTGT---TTCT--CGAAT---TGGTCTTTCATTAAAAATGAACGGAGCAGGACCA-ACATTTTtttttagatat
gi|5 : A-----C-----T--A-AT--T---TGTGCAT----CA-TATCACCA--AACTGG----GCTG-GAAGGA-CTGAAATTTA-TAATGAGTTAAT-CAGAC-TCGTA-T-GTTTAGACA-ATGAGCT----TGCAT-TTTG-CACCAGG---CTTCACCCCT-GCTGTGGAA---CCAATTGTCCTT-GA-AGT-TGT-CAT--CTTG-GCATT-TGTAAA-CAT----------T-C-GAAA-ATCTAA------ATCACGATGCCAATT-TGTA-AAAAAAAAATCTACAAA-----TGAATGA---CA--TGATTGG-----ACAAAATTA-TTGTC--AGACAATAGG-ACAGACTGCTTTCTGTTTT--C-Agtattttcatgatgtcaagaggaac
gi|6 : tcGAATGG-----ACGAAAACCCTAGGT--GGACAATAGG-ACTGAGTACTA------------ACT---CGCCCGTTCATTAAAAATTACCG--AAAGGAGCTCCCATTTTCGACATGTCTACAACTTTGCTAGTGGTCATGGGGATTTCACA-TCG-AATAAAATTCCGTTGGCACC-----AA-------------------------AA---ATAA------CCCT--TACTACTTACTACATA-------CCCTCCT---CTTATATAA----TGT---AGGATCA---TGAGAGG--GGAAACAAACAT
gi|7 : gacggCCAAAAT--CAGAA-TATT---TGTGTTC-CAATCGTC----C-----TACTTAGTCTGAGAAAG-CCTGCCT-----ACA-GAAAGTTCTTATTCCCTCATTT---TGGCCGAGCA--TAT----TTTAATT---------CCAT------AATTT------GCAGTTGGGGATT-GTACTTC-TAAT-ACCGGAAG--------TGTT-GTATT---TTC-G-A---AAATTCAAGAAAT--------AATA-AGAAA---GTGGT-TGCTTGATC----TACATAGAAAGATGCGCTTACATGGTTAGgattttaaacatcg
gi|8 : a-GGCCAAAAT--AAATT-TAAAGTTTGT-TTC-CTCTCGCCATC-T-----GA----GTCTGAGAAAGTCTTGCCG-----ACCCAAATGTTTTTATTCAGTCATTT---TGGCAAAGTTGGTTT----TTT--TTATAATCCCGTTATCCGGAAAATTT------CCAGTGCTGGATCAATAATTTATAATGACTGGAAGT-TTCAA-TATT-GTCGTTGCTTTCG-ATC
gi|9 : atttcatcattcaTG-GACCAAAAT--TAAAA-TATTGTTT-----C-CCCTTGCC----C-----GACCGAGTCTTAGAAAGTCCCGCCAATTTTACCCAAATCTTTTTATTCCATCATTTTTATAGCAAA-TA--TTT----TTT--TT---------T--TCTGGAAAATTTCCGCTGCCAGATC--GATCAGTATTTCATA
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111
lowQualScore : 4444444444444444 11111 111 1111 4444444444444444 222222 222222222 11 4444444444444444 1 33333333333 1 000000000000000000000000000000000000000000000000000000000000000000000000 2222 1 111 6666666666666666666666666666666 11111111 2222 3333333333 3333333333 11111 444444444444444444444444444444444444444444444444444444444444444444 11111 1111 222 11111111111111111111111111111111111111111111111 111 2222222222222222 4444444444 111
lowQualScore : 8 1 55 1 55 4 55 3333333333333333 44444 000 99 4444 9999999999999999 1 0 333333 22 8 3 3 11 22 1 2 222222222 8 8 33 8 0 0 3 6 2222222222222222 2 3 44444444444 1 0 4 111111111111111111111111111111111111111111111111111111111111111111111111 2222 1 1 0 333 8 8 99 7777777777777777777777777777777 88888888 5 66 4444 5 5 1 4 1 99 5 8 4 4 4 5 7777777777 5 888 5 888 1 88 1 8888 5 5 77 66 4 5 5 7777777777 5 5 66666 777777777777777777777777777777777777777777777777777777777777777777 4 11111 5 4 1 66 1 8888 66 4 888 1 66 7 8 444 44 88888888888888888888888888888888888888888888888 222 7777777777777777 4444444444 99 6 555 6 99
lowQualScore : . . .. . .. . .. ................ ..... ... .. .... ................ . . ...... .. . . . .. .. . . ......... . . .. . . . . . ................ . . ........... . . . ........................................................................ .... . . . ... . . .. ............................... ........ . .. .... . . . . . .. . . . . . . .......... . ... . ... . .. . .... . . .. .. . . . .......... . . ..... .................................................................. . ..... . . . .. . .... .. . ... . .. . . ... .. ............................................... ... ................ .......... .. . ... . ..
lowQualScore : 0 0 55 1 55 0 55 4444444444444444 33333 000 22 2222 3333333333333333 0 8 000000 44 2 8 8 88 22 0 5 888888888 0 0 88 0 8 8 2 5 5555555555555555 8 5 55555555555 0 0 2 000000000000000000000000000000000000000000000000000000000000000000000000 5555 0 0 0 888 0 0 22 0000000000000000000000000000000 00000000 7 99 4444 0 0 7 4 0 88 7 9 4 4 4 0 8888888888 0 888 0 888 1 88 7 9999 7 7 99 44 0 7 7 0000000000 7 7 77777 999999999999999999999999999999999999999999999999999999999999999999 6 11111 1 4 0 11 0 8888 11 4 888 4 99 3 0 000 66 00000000000000000000000000000000000000000000000 000 8888888888888888 2222222222 22 7 333 7 22
consensus : NNNCTG-GGCCAAAATNAAAA--TATTGTT--TGT-TT--CCCCTCGCC----C-----GA----GTCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----TTTT----------TT-A--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGA-C-TGG---AGAAANGT-CGTCTACAGGGTTAGGT---------AGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAAT------TTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GATA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGTAAA-CAT---------ATGC-GAAA-ATCCAA-----AT------CNCG------ATC-TG----T--------A-ATCTA-AAA-----T--AT-A---CA--TGAATGG-----ACAAAAACC-TAGNC--GGACAATAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCATA-T-G-AATAAAATTCTGCTGGCACC-----AAAGAG--------AN-----------AA---ANAA------ACCT--NTCTACC-------TA-------CCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
Reference ( family-492 ) : NNNCTG-GGCCAAAATNAAAA--TATTGTT--TGT-TT--CCCCTCGCC----C-----GA----GTCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----TTTT----------TT-A--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTNGTTTT-GATCTAAATTCAAGAAATAATA-GGAAAGAGGTGGTCTGCTAGATCGG-C-TGN---AGAAANGT-CGTCTACAGGATTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TTGCCGGTTTACNCAANTT-CTATTCA-A-ACGAAAACA--GATA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGTAAA-CAT---------ATGC-GAAA-ATCCAA-----AT------CNCG------ATC-TG----T--------A-ANCTA-AAA-----T--AT-A---CA--TGAATGG-----ACAAAAACC-TAGNC--GGACAANAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCATA-T-G-AATAAAATTCTGCTGGCACC-----AAAGAG--------AN-----------AA---ANAA------ACCT--NTCTACC-------TA-------CCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
gi|1 : CTG-GGCCAAAATAAATA--TATTGTT--TGT-TT--CCCCTCGCC----C-----GA----GTCTAAGAAAGTCCTGCCA-----ACCCAAAAATTTTTG---AGTCATTT---TGGCGAAGTT--TTT----TTTT----------TTGA--TCGGGAAAATGT------CCAGAGCGAGGTCAGTATTTTATATTGACCAGAAGT-TTC-AGTATT-TT-ATTTTTTTTGGATCCAAATTCAAGAAATAATACAAAAAGAGGTGGTTTGTGAGATTGATC-TGG---AGAAAAGT-CATCCACAGGATTAG
gi|1 : cttTTCA-A-ACGAAAACA--GATA-----C------------C--A-AT--T---TGTGTGT---C----A-TCCTGCCA--AATTGA----TCTG-GAAGGA-ATGGAATTTT-CAATGTTTTATTTTACAC-TCGTA-T-GATTAGACA-ATGAGCTAGCTTGCATATTTG-CACCAGG---CTTTGCCCCT-GCTGTGGAC---TGAAATGGCCAC-GA-AGT-TGC-CAT--CTTG-GTACT-TGTAAA-CGT-----------GC-AAAA-ATTCAA-----AT------CACA------ATCCTG----C--------A-AGCTA-AAG-----T--AT-A---CACTTTAATGG-----ACAAAAACC-AAGAC--AGACAAATAGACTGATTGCTGTATGTTTA--C-AATGATCAATCCTTCATTAAAAATGACCT--ACAGGACTACCCATTTCTGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCATA-T-T-AATTAAATTCTGCTGGCACCAAAAAAAAAAA--------AA-----------AA---AAAA------ACCT--TTTTACC-------TA-------CCCTC---------------G-----------G-GA-GAGG--GGAAACAAACATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcaaacgaaaacagataccaatttgtgtgtcatcctgccaaattgatctggaaggaatggaattttcaatgttttattttacactcgtatgattagacaatgagctagcttgcatatttgcaccaggctttgcccctgctgtggactgaaatggccacgaagttgccatcttggtacttgtaaacgtgcaaaaattcaaatcacaatcctgcaagctaaagtatacactttaatggacaaaaaccaagacagacaaatagactgattgctgtatgtttacaatgatcaatccttcattaaaaatgacctacaggactacccatttctgacatgtctgcaactttgctaatggtcatgggaatttcatattaattaaattctgctggcaccaaaaaaaaaaaaaaaaaaaacctttttacctaccctcgggagaggggaaacaaacata
gi|10 : cttctgggccaaaataaatatattgtttgtttcccctcgcccgagtctaagaaagtcctgccaacccaaaaatttttgagtcattttggcgaagtttttttttttgatcgggaaaatgtccagagcgaggtcagtattttatattgaccagaagtttcagtattttattttttttggatccaaattcaagaaataatacaaaaagaggtggtttgtgagattgatctggagaaaagtcatccacaggattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggATTTGGCACCAGG---ATTCACCTGT-GCTGTGGAC---TGAG-------------GT-TGC-CAT--CTTG-GCATT-TGTAAA-CAT---------GTGC-AAAA-ATCCAA-----AT------CCTG------ATC-AGTAAAT--------A-ATCAA-AAAAGTACC--AT-A---CA---GAA-GG-----ACAAAATCA-TAGTC--GTACAATAGGACAGATTGCTAT
gi|11 : agCTAATAGTCATGGGAATTTCATA-TGG-AAGAAAG---TGCCGG---C-----AAAGTGCCCC----CC-----------CC---CTAATTTTTTACCTACATGTACC-------TACCTCATGCCCTCCT---CAGA---AATGTACAGG-GTTAG-AA-GATG--GGAAACAAACGTA
gi|12 : ATTTA-CAATGCCTTATTTCAGAC-CTGTA-T-GATTAGACA-ATGAGCT----TGCA-ATTTG-CACCAGG---CTTTGTTCCT-GCTGTGGAC---CGAATTGGTCAC--A-CGTACG---ATTACTT--GTATT---AAAA-CAT---------ATAT-GCAG-ATttcttaaatat
gi|13 : agactctAATGGTCATGGGAATTTGATA-T-TCAATAAA-TTTTGCTGGCACC-----AAAAAATTTTTTTTAC-----------CA---ACCA------ACCT--ACCTACC-------TA-------GCCTCCT---CCAA---AATTT--AAG-GTCGG-GA-GAGG--GGAAGCAATCATA
gi|13 : TGAAAA--TAT-GAT--TGC-TT--CCCCTCTCC----C-----GA----ttttcaaa
gi|14 : aatggtcatgggaatttgatattcaataaattttgctggcaccaaaaaattttttttaccaaccaacctacctacctagcctcctccaaaatttaaggGCCAAAATTAAAA--TATAGTT--TGT-TT--CCCCTTGCC----CAACC-GA----CTCTTAGGAAGTCCCACCG-----ACCCAAAAGTTTTTATTCCTTCATTT---CAGCAAAGTT--TTT----TATG----------CT----TCCGGAAaa
gi|15 : ACACAAGTT-CTAT-CA-A-ATGAAAACA--GATATACCTC------------C--T-AT--T---TGTGTGT---T----A-GCTTGCCC--CATTGGACA-TCTT-G-------C---ATTTA-CAATGATTTATTTAAGAC-TTGTA-T-GTTTAGACA-ATAAGCT-tctttgattcgggggca
gi|16 : -AAA-----T--AT-A-------TGAAGGGGATCAACAAAAACC-TAGTG--GGACAACAGGACTCATTGCTATATGTTTT--C-AAT---CGGCCCTTCATTAAAAATGACCA--GCAGAACCGCCCATTTTCAACATGCCTtg
gi|17 : cGAATGG-----GTATTAACC-TGGTC--AGACAAAAGGACTGATTGCAAAATTTTTTTTC-AGT---AGGTT-TTAATTGCAAATGACCA--GCTGGACAACCCGTTTTCGACATGCCT
gi|18 : AAATTAAAAAATATTGTT--CAT-TT--CCTCTCACC----C-----GACTGAGTCTGAGAAAGTCTTATTG-----ATCCAAAAGATTTTATCCCGTCATTT---TGGCAA
gi|19 : A-CAGTGGTGTATTTTAGAC-TTGTA-T-GATTAAACA-ATGA----GCTTGCAT-TTTG-CACCAGA---CTTTGCCCCT-GCTATGGGT---CAAGT
gi|2 : cctg-GGCCAAAATATAAA--TATTGTT--TGT-TT--CCCCTCGCCGAACC-----AA----GTCTGAGAAAGTCCCAGCG-----ACCCAAAACTTTTTATTCCGTTATGT---TGGCAAAGTT--TTTATTTTTTT----------TT-AATTCTAGAA--TTT------TCAGAACAGC-TCGGAAG--AAAACTGACCAGGAGTGTTC-A-TCTTTGT-GTTGGTTTT-GATCTA--TT--AGAG-------GAAAAGAGATGGTCTGCTAGATCGG-CATGA---AGAAATGT-CATCTTCTGGATTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAATTT-CTAT-CA-A-ACAAAAAAAAGGATA-----CATAACCACTTACC--A-GTG-TG--TGTGTAT---ATTAAA-TCTTGCCA--AATCGG----TCTG-GAAGAA-ACAGACTTTA-CAATGTTTTACTTTA-AC-TTGTA-T-GATTAAGCA-ATGAGCT----TGTGT-TTTG-CATGTGG---TTTTGCCCCT-GCTGTAGTC---CAAAT-GACCAC-AA-AGT-TGC-CAT--CTTG-GTTCT-TGTAAA-CAT---------ATGC-GAAA-ATCTGA-----ATGACGATCTCG------ATT-TG----T--------A-ATCTA-AAA----------------------A-GG-----ACTAAAACC-TAAAT--GGATAATAGGACTGATTGCTAT--GTTTT--C-GAT---TGGTCCTTCATTAAAAGTGACCG--ACAga
gi|20 : aagcctgtacagaaaagtctggaaaactatatattcaCA--GATCGGG---TCTTTGAAGGA-ACGGAATTTA-CAATGTCGTAATGTA-AC-TCGTA-T-GAT
gi|21 : tctctgcaCTACC-------CA-------CCCTCCTCTGC--A---AATGT--AGGCGTC-G-GA-GAGGGCGGAAACAAAC
gi|22 : acAATAGGACTAGTTGCTCT---TTTT--C-AAC---CAAACCTTCATTCAAAATGACCG--ACAgaatctttagat
gi|23 : AAATTAAAA---ATTGTTGTTGT-TTTCTCCTTCACC----CGGACTGA----GTC-GAGAAA
gi|24 : A--GACA-----C------------T--ATATAGT---TGTGTGT---C----A-TCTCGCCA--AATTGG----TCTG-GAAAGA-
gi|25 : CTGAGGCCAAAAGTAAAA--TATTGTT--TGT-TT--CCCCTCAC
gi|3 : tgCCAGAAGT-T-C-A-GTTT-GT-GTTGGTTTT-GATCTAAAATTAAGAAAT--------------------GCAAGATCAA-C-AGGGAGAGAAATGT-CTTCTATAGAGTTAGG----------AGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAAT------TTG------TACACAAGTT-CT-TTCACA-ATAAAATCA--GATA-----CATTAC-------C--G-ATA-TGTGTGTGTGT---C----A-TACCACCA--AATCGG----TCTC-GAAGAA-AAGGAATTTG-CCGTGCTTTCT----GACAT--TA-T-CATTGGACA-ATAAGCT----TGCGT-TTTG-CACCAGG---TGTCGCTCCT-GTCATGGGC---CAAAT-GACCAT-GA-AGT-CTC-CAT--CTTT-G-ATTCTGTAAAATATGGAAAAAAAATGC-GAAATATCCAAGGACAAT------CTCA------ATT-TG----T--------A-ATCTATGAA-----C--AT-AAGACC--TGAATGG-----ACATAATCC-TAAAC--AGACAATAAAACTGAATGC-A-ATGTTTT--C-AAT---TGGTCCTTCATAAAAATTGACTG--GCAGGACCACCCATTTTTGACATGTCTGCAACT-----AATG-TCATGGGAATTTCATAAT-G-AATAAAATTCTGCTGACATG-----AAAGGG--------GGGGGGGGGGACCAACTCAAAA------ATTT--CTCTACC-------TA-------CCCTCCT---G--A---AATTT--AGG-GTC-A-GAGGAGG--AGAAACAAACATAa
gi|4 : TTTACCCAAGTTTCTGATCA-ACATGAGAACA--GATA-----C------------CTCA-CTA-T---TGCGTGTGAGC----AATCCTGCCACGAATCTGCGTATC-G-GAAGAACACAAAATTAAACAATGTTTTATC--AAGCATTGTAATAGATTAGATACATGAACTTGCTT---TAATGA-CACCAGAACATTCCACCTCTTACTGTGCACACCCAAATTGGCCACCGACGGT-CGCATGT--CTTGTACTTC-TGTAAA-CAT----------TGCCGCAA-A---AA-----AT------CT-A------ATC-TA----C--------ATAATTA-CGT-----T--AC-A---CA---AAATGG-----ACAATT-CC-CAGCCATGGACAAGAGGAGTTATTGCTGT---TTCT--CGAAT---TGGTCTTTCATTAAAAATGAACGGAGCAGGACCA-ACATTTTtttttagatat
gi|5 : A-----C------------T--A-AT--T---TGTGCAT---C----A-TATCACCA--AACTGG----GCTG-GAAGGA-CTGAAATTTA-TAATGAGTTAATC-AGAC-TCGTA-T-GTTTAGACA-ATGAGCT----TGCAT-TTTG-CACCAGG---CTTCACCCCT-GCTGTGGAA---CCAATTGTCCTT-GA-AGT-TGT-CAT--CTTG-GCATT-TGTAAA-CAT----------T-C-GAAA-ATCTAA-----AT------CACGATGCCAATT-TG----TAAAAAAAAA-ATCTACAAA-----TGAATGA---CA--TGATTGG-----ACAAAATTA-TTGTC--AGACAATAGGACAGACTGCTTTCTGTTTT--C-Agtattttcatgatgtcaagaggaac
gi|6 : tcGAATGG-----ACGAAAACCCTAGGT--GGACAATAGGACTGAGTACTA------------ACT---CGCCCGTTCATTAAAAATTACCG--AAAGGAGCTCCCATTTTCGACATGTCTACAACTTTGCTAGTGGTCATGGGGATTTCACA-TCG-AATAAAATTCCGTTGGCACC-----AA-------------------------AA---ATAA------CCCT--TACTACTTACTACATA-------CCCTCCT---CTTATATAATGT--AGG-ATC-ATGA-GAGG--GGAAACAAACAT
gi|7 : gacggCCAAAATCAGAA--TATT-----TGTGTT--CCAATCGTC----C-----TACTTAGTCTGAGAAAG-CCTGCCT-----ACA-GAAAGTTCTTATTCCCTCATTT---TGGCCGAGCA--TAT----TTTA----------AT----TCC--ATAATTT------GCAGTTGGGGATT-GTACTTC-TAAT-ACCGGAAGT--------GTT-GT-ATT---TTC-GA---AAATTCAAGAAATAATA-AGAAA---GTGGT-TGCTTGATCTA-C--AT---AGAAAGATGCGCTTACATGGTTAGgattttaaacatcg
gi|8 : a-GGCCAAAATAAATT--TAAAGTT--TGT-TT--CCTCTCGCCATC-T-----GA----GTCTGAGAAAGTCTTGCCG-----ACCCAAATGTTTTTATTCAGTCATTT---TGGCAAAGTTGGTTT----TTTTTATAATCCCGTT-A--TCCGGAAAATTT------CCAGTGCTGGATCAATAATTTATAATGACTGGAAGT-TTCAA-TATT-GTCGTTGCTTTC-GATC
gi|9 : atttcatcattcaTG-GACCAAAATTAAAA--TATTGTT--T-------CCCCTTGCC----C-----GACCGAGTCTTAGAAAGTCCCGCCAATTTTACCCAAATCTTTTTATTCCATCATTTTTATAGCAAA-TA--TTT----TTTT----------TT----TCTGGAAAATTTCCGCTGCCAGATC--GATCAGTATTTCATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 444444444444444 11111 111 1111 4444444444444444 222222 222222222 444444444444444 1 1 2222222 2222 111 444444444 2 2222 1 111 6666666666666666666666666666666 11111111 2222 3333333333 3333333333 11111 44444444444444444444444444444444444444444444444444444444444444444 11111 1111 222 11111111111111111111111111111111111111111111111 111 2222222222222222 4444444444 111
lowQualScore : 8 1 66 2 4 000000000000000 44444 000 99 4444 9999999999999999 1 0 333333 22 8 3 3 11 22 1 2 222222222 8 8 88 8 0 0 3 6 000000000000000 2 1 0 0 3333333 1 0000 6 777 000000000 0 2222 1 0 333 8 8 99 7777777777777777777777777777777 88888888 5 66 4444 5 5 1 4 1 99 5 8 4 4 4 5 7777777777 5 888 5 888 1 88 1 8888 5 5 77 66 4 5 5 7777777777 5 5 66666 77777777777777777777777777777777777777777777777777777777777777777 4 11111 5 4 1 66 4 8888 66 4 888 1 66 7 8 444 44 88888888888888888888888888888888888888888888888 222 7777777777777777 4444444444 99 6 555 6 99
lowQualScore : . . .. . . ............... ..... ... .. .... ................ . . ...... .. . . . .. .. . . ......... . . .. . . . . . ............... . . . . ....... . .... . ... ......... . .... . . ... . . .. ............................... ........ . .. .... . . . . . .. . . . . . . .......... . ... . ... . .. . .... . . .. .. . . . .......... . . ..... ................................................................. . ..... . . . .. . .... .. . ... . .. . . ... .. ............................................... ... ................ .......... .. . ... . ..
lowQualScore : 0 0 11 2 4 000000000000000 33333 000 22 2222 3333333333333333 0 8 000000 44 2 8 8 88 22 0 5 888888888 0 0 88 0 8 8 2 5 888888888888888 8 0 2 0 0000000 0 8888 5 555 000000000 5 5555 0 0 888 0 0 22 0000000000000000000000000000000 00000000 7 99 4444 0 0 7 4 0 88 7 9 4 4 4 0 8888888888 0 888 0 888 1 88 7 9999 7 7 99 44 0 7 7 0000000000 7 7 77777 55555555555555555555555555555555555555555555555555555555555555555 6 11111 1 4 0 11 0 8888 11 4 888 4 99 3 0 000 66 00000000000000000000000000000000000000000000000 000 8888888888888888 2222222222 22 7 333 7 22
consensus : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC----C----GAC--AGTCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----TTTT----------TT-A--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGA-CATGG---AGAAATG---TCNTCTA---CAGG---------GTTAGG-AGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GATA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGTAAA-CAT---------ATGC-GAAA-ATCCAA-----AT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT-A---CA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCATA-T-G-AATAAAATTCTGCTGGCACC-----AAAGAG--------AN-----------AA---ANAA------ACCT--NTCTACC-------TA-------CCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
Reference ( family-492 ) : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC----C----GA----GTCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----TTTT----------TT-A--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGA-C-TGG---AGAAANG---TCGTCTA---CAGG---------GTTAGGTAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GATA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGTAAA-CAT---------ATGC-GAAA-ATCCAA-----AT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT-A---CA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCATA-T-G-AATAAAATTCTGCTGGCACC-----AAAGAG--------AN-----------AA---ANAA------ACCT--NTCTACC-------TA-------CCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
gi|1 : CTG-GGCCAAAATAAATA--TATTGTTTGT-TTCCCCTCGCC----C----GA----GTCTAAGAAAGTCCTGCCA-----ACCCAAAAATTTTTG---AGTCATTT---TGGCGAAGTT--TTT----TTTT----------TTGA--TCGGGAAAATGT------CCAGAGCGAGGTCAGTATTTTATATTGACCAGAAGT-TTC-AGTATT-TT-ATTTTTTTTGGATCCAAATTCAAGAAATAATACAAAAAGAGGTGGTTTGTGAGATTGATC-TGG---AGAAAAG---TCATCCA---CAGG---------ATTAG
gi|1 : cttTTCA-A-ACGAAAACA--GATA-----C------------C--A-AT--T---TGTGTGT---C----A-TCCTGCCA--AATTGA----TCTG-GAAGGA-ATGGAATTTT-CAATGTTTTATTTTACAC-TCGTA-T-GATTAGACA-ATGAGCTAGCTTGCATATTTG-CACCAGG---CTTTGCCCCT-GCTGTGGAC---TGAAATGGCCAC-GA-AGT-TGC-CAT--CTTG-GTACT-TGTAAA-CGT-----------GC-AAAA-ATTCAA-----AT------CACA------ATCCTG----C--------AAGCTA-AAG-----T--AT-A---CACTTTAATGG-----ACAAAAACC-AAGAC--AGACAAATAG-ACTGATTGCTGTATGTTTA--C-AATGATCAATCCTTCATTAAAAATGACCT--ACAGGACTACCCATTTCTGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCATA-T-T-AATTAAATTCTGCTGGCACCAAAAAAAAAAA--------AA-----------AA---AAAA------ACCT--TTTTACC-------TA-------CCCTC---------------G-----------G-GA-GAGG--GGAAACAAACATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcaaacgaaaacagataccaatttgtgtgtcatcctgccaaattgatctggaaggaatggaattttcaatgttttattttacactcgtatgattagacaatgagctagcttgcatatttgcaccaggctttgcccctgctgtggactgaaatggccacgaagttgccatcttggtacttgtaaacgtgcaaaaattcaaatcacaatcctgcaagctaaagtatacactttaatggacaaaaaccaagacagacaaatagactgattgctgtatgtttacaatgatcaatccttcattaaaaatgacctacaggactacccatttctgacatgtctgcaactttgctaatggtcatgggaatttcatattaattaaattctgctggcaccaaaaaaaaaaaaaaaaaaaacctttttacctaccctcgggagaggggaaacaaacata
gi|10 : cttctgggccaaaataaatatattgtttgtttcccctcgcccgagtctaagaaagtcctgccaacccaaaaatttttgagtcattttggcgaagtttttttttttgatcgggaaaatgtccagagcgaggtcagtattttatattgaccagaagtttcagtattttattttttttggatccaaattcaagaaataatacaaaaagaggtggtttgtgagattgatctggagaaaagtcatccacaggattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggATTTGGCACCAGG---ATTCACCTGT-GCTGTGGAC---TGAG-------------GT-TGC-CAT--CTTG-GCATT-TGTAAA-CAT---------GTGC-AAAA-ATCCAA-----AT------CCTG------ATC-AGTAAAT--------AATCAA-AAAAGTACC--AT-A---CA---GAA-GG-----ACAAAATCA-TAGTC--GTACAA-TAGGACAGATTGCTAT
gi|11 : agCTAATAGTCATGGGAATTTCATA-TGG-AAGAAAG---TGCCGG---C-----AAAGTGCCCC----CC-----------CC---CTAATTTTTTACCTACATGTACC-------TACCTCATGCCCTCCT---CAGA---AATGTACAGG-GTTAG-AA-GATG--GGAAACAAACGTA
gi|12 : ATTTA-CAATGCCTTATTTCAGAC-CTGTA-T-GATTAGACA-ATGAGCT----TGCA-ATTTG-CACCAGG---CTTTGTTCCT-GCTGTGGAC---CGAATTGGTCAC--A-CGTACG---ATTACTT--GTATT---AAAA-CAT---------ATAT-GCAG-ATttcttaaatat
gi|13 : agactctAATGGTCATGGGAATTTGATA-T-TCAATAAA-TTTTGCTGGCACC-----AAAAAATTTTTTTTAC-----------CA---ACCA------ACCT--ACCTACC-------TA-------GCCTCCT---CCAA---AATTT--AAG-GTCGG-GA-GAGG--GGAAGCAATCATA
gi|13 : TGAAAA--TAT-GATTGC-TTCCCCTCTCC----C----GA----ttttcaaa
gi|14 : aatggtcatgggaatttgatattcaataaattttgctggcaccaaaaaattttttttaccaaccaacctacctacctagcctcctccaaaatttaaggGCCAAAATTAAAA--TATAGTTTGT-TTCCCCTTGCC----CAACCGA----CTCTTAGGAAGTCCCACCG-----ACCCAAAAGTTTTTATTCCTTCATTT---CAGCAAAGTT--TTT----TATG----------CT----TCCGGAAaa
gi|15 : ACACAAGTT-CTAT-CA-A-ATGAAAACA--GATATACCTC------------C--T-AT--T---TGTGTGT---T----A-GCTTGCCC--CATTGGACA-TCTT-G-------C---ATTTA-CAATGATTTATTTAAGAC-TTGTA-T-GTTTAGACA-ATAAGCT-tctttgattcgggggca
gi|16 : -AAA-----T--AT-A-------TGAAGGGGATCAACAAAAACC-TAGTG--GGACAA-CAGGACTCATTGCTATATGTTTT--C-AAT---CGGCCCTTCATTAAAAATGACCA--GCAGAACCGCCCATTTTCAACATGCCTtg
gi|17 : cGAATGG-----GTATTAACC-TGGTC--AGACAA-AAGGACTGATTGCAAAATTTTTTTTC-AGT---AGGTT-TTAATTGCAAATGACCA--GCTGGACAACCCGTTTTCGACATGCCT
gi|18 : AAATTAAAAAATATTGTTCAT-TTCCTCTCACC----C----GACTGAGTCTGAGAAAGTCTTATTG-----ATCCAAAAGATTTTATCCCGTCATTT---TGGCAA
gi|19 : A-CAGTGGTGTATTTTAGAC-TTGTA-T-GATTAAACA-ATGA----GCTTGCAT-TTTG-CACCAGA---CTTTGCCCCT-GCTATGGGT---CAAGT
gi|2 : cctg-GGCCAAAATATAAA--TATTGTTTGT-TTCCCCTCGCCGAACC----AA----GTCTGAGAAAGTCCCAGCG-----ACCCAAAACTTTTTATTCCGTTATGT---TGGCAAAGTT--TTTATTTTTTT----------TT-AATTCTAGAA--TTT------TCAGAACAGC-TCGGAAG--AAAACTGACCAGGAGTGTTC-A-TCTTTGT-GTTGGTTTT-GATCTA--TT--AGAGG-------AAAAGAGATGGTCTGCTAGATCGG-CATGA---AGAAATGTCATCTTCTGGATTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAATTT-CTAT-CA-A-ACAAAAAAAAGGATA-----CATAACCACTTACC--A-GTG-TG--TGTGTAT---ATTAAA-TCTTGCCA--AATCGG----TCTG-GAAGAA-ACAGACTTTA-CAATGTTTTACTTTA-AC-TTGTA-T-GATTAAGCA-ATGAGCT----TGTGT-TTTG-CATGTGG---TTTTGCCCCT-GCTGTAGTC---CAAAT-GACCAC-AA-AGT-TGC-CAT--CTTG-GTTCT-TGTAAA-CAT---------ATGC-GAAA-ATCTGA-----ATGACGATCTCG------ATT-TG----T--------AATCTA-AAA----------------------A-GG-----ACTAAAACC-TAAAT--GGATAA-TAGGACTGATTGCTAT--GTTTT--C-GAT---TGGTCCTTCATTAAAAGTGACCG--ACAga
gi|20 : aagcctgtacagaaaagtctggaaaactatatattcaCA--GATCGGG---TCTTTGAAGGA-ACGGAATTTA-CAATGTCGTAATGTA-AC-TCGTA-T-GAT
gi|21 : tctctgcaCTACC-------CA-------CCCTCCTCTGC--A---AATGT--AGGCGTC-G-GA-GAGGGCGGAAACAAAC
gi|22 : acAA-TAGGACTAGTTGCTCT---TTTT--C-AAC---CAAACCTTCATTCAAAATGACCG--ACAgaatctttagat
gi|24 : A--GACA-----C------------T--ATATAGT---TGTGTGT---C----A-TCTCGCCA--AATTGG----TCTG-GAAAGA-
gi|25 : CTGAGGCCAAAAGTAAAA--TATTGTTTGT-TTCCCCTCAC
gi|3 : tgCCAGAAGT-T-C-A-GTTT-GT-GTTGGTTTT-GATCTAAAATTAAGAAAT--------------------GCAAGATCAA-C-AGGGAGAGAAATG---TCTTCTA---TAGA---------GTTAGG-AGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTG------TACACAAGTT-CT-TTCACA-ATAAAATCA--GATA-----CATTAC-------C--G-ATA-TGTGTGTGTGT---C----A-TACCACCA--AATCGG----TCTC-GAAGAA-AAGGAATTTG-CCGTGCTTTCT----GACAT--TA-T-CATTGGACA-ATAAGCT----TGCGT-TTTG-CACCAGG---TGTCGCTCCT-GTCATGGGC---CAAAT-GACCAT-GA-AGT-CTC-CAT--CTTT-G-ATTCTGTAAAATATGGAAAAAAAATGC-GAAATATCCAAGGACAAT------CTCA------ATT-TG----T--------AATCTATGAA-----C--AT-AAGACC--TGAATGG-----ACATAATCC-TAAAC--AGACAA-TAAAACTGAATGC-A-ATGTTTT--C-AAT---TGGTCCTTCATAAAAATTGACTG--GCAGGACCACCCATTTTTGACATGTCTGCAACT-----AATG-TCATGGGAATTTCATAAT-G-AATAAAATTCTGCTGACATG-----AAAGGG--------GGGGGGGGGGACCAACTCAAAA------ATTT--CTCTACC-------TA-------CCCTCCT---G--A---AATTT--AGG-GTC-A-GAGGAGG--AGAAACAAACATAa
gi|4 : TTTACCCAAGTTTCTGATCA-ACATGAGAACA--GATA-----C------------CTCA-CTA-T---TGCGTGTGAGC----AATCCTGCCACGAATCTGCGTATC-G-GAAGAACACAAAATTAAACAATGTTTTATC--AAGCATTGTAATAGATTAGATACATGAACTTGCTT---TAATGA-CACCAGAACATTCCACCTCTTACTGTGCACACCCAAATTGGCCACCGACGGT-CGCATGT--CTTGTACTTC-TGTAAA-CAT----------TGCCGCAA-A---AA-----AT------CT-A------ATC-TACA--T--------AAT-TA-CGT-----T--AC-A---CA---AAATGG-----ACAATT-CC-CAGCCATGGACAA-GAGGAGTTATTGCTGT---TTCT--CGAAT---TGGTCTTTCATTAAAAATGAACGGAGCAGGACCA-ACATTTTtttttagatat
gi|5 : A-----C------------T--A-AT--T---TGTGCAT---C----A-TATCACCA--AACTGG----GCTG-GAAGGA-CTGAAATTTA-TAATGAGTTAATC-AGAC-TCGTA-T-GTTTAGACA-ATGAGCT----TGCAT-TTTG-CACCAGG---CTTCACCCCT-GCTGTGGAA---CCAATTGTCCTT-GA-AGT-TGT-CAT--CTTG-GCATT-TGTAAA-CAT----------T-C-GAAA-ATCTAA-----AT------CACGATGCCAATT-TG----TAAAAAAAAAATCTACAAA-----TGAATGA---CA--TGATTGG-----ACAAAATTA-TTGTC--AGACAA-TAGGACAGACTGCTTTCTGTTTT--C-Agtattttcatgatgtcaagaggaac
gi|6 : tcGAATGG-----ACGAAAACCCTAGGT--GGACAA-TAGGACTGAGTACTA------------ACT---CGCCCGTTCATTAAAAATTACCG--AAAGGAGCTCCCATTTTCGACATGTCTACAACTTTGCTAGTGGTCATGGGGATTTCACA-TCG-AATAAAATTCCGTTGGCACC-----AA-------------------------AA---ATAA------CCCT--TACTACTTACTACATA-------CCCTCCT---CTTATATAATGT--AGG-ATC-ATGA-GAGG--GGAAACAAACAT
gi|7 : gacggCCAAAATCAGAA--TATT---TGTGTTCCAATCGTC----C----TACTTAGTCTGAGAAAG-CCTGCCT-----ACA-GAAAGTTCTTATTCCCTCATTT---TGGCCGAGCA--TAT----TTTA----------AT----TCC--ATAATTT------GCAGTTGGGGATT-GTACTTC-TAAT-ACCGGAAGT--------GTT-GT-ATT---TTC-GA---AAATTCAAGAAATAATA-AGAAA---GTGGT-TGCTTGATCTA-CATAG---AAAGATG----CGCTTA---CATG---------GTTAGgattttaaacatcg
gi|8 : a-GGCCAAAATAAATT--TAAAGTTTGT-TTCCTCTCGCCATC-T----GA----GTCTGAGAAAGTCTTGCCG-----ACCCAAATGTTTTTATTCAGTCATTT---TGGCAAAGTTGGTTT----TTTTTATAATCCCGTT-A--TCCGGAAAATTT------CCAGTGCTGGATCAATAATTTATAATGACTGGAAGT-TTCAA-TATT-GTCGTTGCTTTC-GATC
gi|9 : atttcatcattcaTG-GACCAAAATTAAAA--TATTGTTT-----CCCCTTGCC----C----GACCGAGTCTTAGAAAGTCCCGCCAATTTTACCCAAATCTTTTTATTCCATCATTTTTATAGCAAA-TA--TTT----TTTT----------TT----TCTGGAAAATTTCCGCTGCCAGATC--GATCAGTATTTCATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATTAAAAATTGTTGTTGTTTTCTCCTTCACCCGGACTGAGTCGAGAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 2222 11111 111 1111 444444444444444 222222 222222222 444444444444444 1 11 2222 111 4444444444 2222 1 111 55555555555555555555555555555555555555 11111111 2222 2222222222 3333333333 11111 4444444444444444444444444444444444444444444444444444444444444444 11111 1111 1 11111111111111111111111111111111111111111111111 111 2222222222222222 4444444444 111
lowQualScore : 8 1 55 6 4 777 6666 77 44444 000 99 4444 6 666666666666666 1 0 333333 22 8 3 3 11 22 1 2 222222222 8 8 88 8 0 0 3 6 000000000000000 2 1 0 33 0000 1 777 3333333333 2222 1 0 333 8 8 99 33333333333333333333333333333333333333 88888888 5 66 4444 5 5 1 4 1 99 5 8 4 4 4 5 4 3333333333 5 888 5 888 1 77 1 8888 5 5 77 66 4 5 5 7777777777 5 5 66666 7777777777777777777777777777777777777777777777777777777777777777 4 11111 5 4 1 66 4 8888 66 4 888 1 66 6 3 8 8 6 6 0 88888888888888888888888888888888888888888888888 222 7777777777777777 4444444444 99 6 555 6 99
lowQualScore : . . .. . . ... .... .. ..... ... .. .... . ............... . . ...... .. . . . .. .. . . ......... . . .. . . . . . ............... . . . .. .... . ... .......... .... . . ... . . .. ...................................... ........ . .. .... . . . . . .. . . . . . . . .......... . ... . ... . .. . .... . . .. .. . . . .......... . . ..... ................................................................ . ..... . . . .. . .... .. . ... . .. . . . . . . . ............................................... ... ................ .......... .. . ... . ..
lowQualScore : 0 0 55 0 0 888 8888 99 33333 000 22 2222 7 777777777777777 0 8 000000 44 2 8 8 88 22 0 5 888888888 0 0 88 0 8 8 2 5 888888888888888 8 0 2 88 8888 0 555 8888888888 5555 0 0 888 0 0 22 99999999999999999999999999999999999999 00000000 7 99 4444 0 0 7 4 0 88 7 9 4 4 4 0 5 6666666666 0 888 0 888 1 99 7 9999 7 7 99 44 0 7 7 0000000000 7 7 77777 5555555555555555555555555555555555555555555555555555555555555555 6 11111 1 4 0 11 0 8888 11 4 888 4 99 7 2 0 0 0 0 8 00000000000000000000000000000000000000000000000 000 8888888888888888 2222222222 22 7 333 7 22
consensus : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCGA-----CCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACC-----AAAGAG--------A-----------CAA---ANAA------ACCT--NTCTACC-------TA-------CCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
Reference ( family-492 ) : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCGA-----CCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACC-----AAAGAG--------A-----------NAA---ANAA------ACCT--NTCTACC-------TA-------CCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
gi|1 : CTG-GGCCAAAATAAATA--TATTGTTTGT-TTCCCCTCGCC---CGA----G--TCTAAGAAAGTCCTGCCAA-----CCCAAAAATTTTTG---AGTCATTT---TGGCGAAGTT--TTT----TTTTT----------TGA--TCGGGAAAATGT------CCAGAGCGAGGTCAGTATTTTATATTGACCAGAAGT-TTC-AGTATT-TT-ATTTTTTTTGGATCCAAATTCAAGAAATAATACAAAAAGAGGTGGTTTGTGAGATTGATCTGGAGA--AAAGT---CATCCA---CAGG----------ATTAG
gi|1 : cttTTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-AT--T---TGTGTGT---C----A-TCCTGCCA--AATTGA----TCTG-GAAGGA-ATGGAATTTT-CAATGTTTTATTTTACAC-TCGTA-T-GATTAGACA-ATGAGCTAGCTTGCATATTTG-CACCAGG---CTTTGCCCCT-GCTGTGGAC---TGAAATGGCCAC-GA-AGT-TGC-CAT--CTTG-GTACT-TGT-AAACGT-----------GC-AAAA-ATTCA-----AAT------CACA------ATCCTG----C--------AAGCTA-AAG-----T--AT---ACACTTTAATGG-----ACAAAAACC-AAGAC--AGACAAATAG-ACTGATTGCTGTATGTTTA--C-AATGATCAATCCTTCATTAAAAATGACCT--ACAGGACTACCCATTTCTGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-TAATTAAATTCTGCTGGCACCAAAAAAAAAAA--------A-----------AAA---AAAA------ACCT--TTTTACC-------TA-------CCCTC---------------G-----------G-GA-GAGG--GGAAACAAACATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcaaacgaaaacagataccaatttgtgtgtcatcctgccaaattgatctggaaggaatggaattttcaatgttttattttacactcgtatgattagacaatgagctagcttgcatatttgcaccaggctttgcccctgctgtggactgaaatggccacgaagttgccatcttggtacttgtaaacgtgcaaaaattcaaatcacaatcctgcaagctaaagtatacactttaatggacaaaaaccaagacagacaaatagactgattgctgtatgtttacaatgatcaatccttcattaaaaatgacctacaggactacccatttctgacatgtctgcaactttgctaatggtcatgggaatttcatattaattaaattctgctggcaccaaaaaaaaaaaaaaaaaaaacctttttacctaccctcgggagaggggaaacaaacata
gi|10 : cttctgggccaaaataaatatattgtttgtttcccctcgcccgagtctaagaaagtcctgccaacccaaaaatttttgagtcattttggcgaagtttttttttttgatcgggaaaatgtccagagcgaggtcagtattttatattgaccagaagtttcagtattttattttttttggatccaaattcaagaaataatacaaaaagaggtggtttgtgagattgatctggagaaaagtcatccacaggattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggATTTGGCACCAGG---ATTCACCTGT-GCTGTGGAC---TGAG-------------GT-TGC-CAT--CTTG-GCATT-TGT-AAACAT---------GTGC-AAAA-ATCCA-----AAT------CCTG------ATC-AGTAAAT--------AATCAA-AAAAGTACC--AT---ACA---GAA-GG-----ACAAAATCA-TAGTC--GTACAA-TAGGACAGATTGCTAT
gi|11 : agCTAATAGTCATGGGAATTTCAT-A-TGGAAGAAAG---TGCCGG---C-----AAAGTGCCCC----C-----------CCC---CTAATTTTTTACCTACATGTACC-------TACCTCATGCCCTCCT---CAGA---AATGTACAGG-GTTAG-AA-GATG--GGAAACAAACGTA
gi|12 : ATTTA-CAATGCCTTATTTCAGAC-CTGTA-T-GATTAGACA-ATGAGCT----TGCA-ATTTG-CACCAGG---CTTTGTTCCT-GCTGTGGAC---CGAATTGGTCAC--A-CGTACG---ATTACTT--GTATT---A-AAACAT---------ATAT-GCAG-ATttcttaaatat
gi|13 : agactctAATGGTCATGGGAATTTGAT-ATT-CAAT-AAATTTTGCTGGCACC-----AAAAAATTTTTTTTA-----------CCA---ACCA------ACCT--ACCTACC-------TA-------GCCTCCT---CCAA---AATTT--AAG-GTCGG-GA-GAGG--GGAAGCAATCATA
gi|13 : TGAAAA--TAT-GATTGC-TTCCCCTCTCC---CGAC--ttttcaaa
gi|14 : aatggtcatgggaatttgatattcaataaattttgctggcaccaaaaaattttttttaccaaccaacctacctacctagcctcctccaaaatttaagGCCAAAATTAAAA--TATAGTTTGT-TTCCCCTTGCC---CAAC--CGACTCTTAGGAAGTCCCACCGA-----CCCAAAAGTTTTTATTCCTTCATTT---CAGCAAAGTT--TTT----T-ATG----------CT---TCCGGAAaa
gi|15 : ACACAAGTT-CTAT-CA-A-ATGAAAACA--GA-----TATACCTC------------C--T-AT--T---TGTGTGT---T----A-GCTTGCCC--CATTGGACA-TCTT-G-------C---ATTTA-CAATGATTTATTTAAGAC-TTGTA-T-GTTTAGACA-ATAAGCT-tctttgattcgggggca
gi|16 : -AAA-----T--AT---A----TGAAGGGGATCAACAAAAACC-TAGTG--GGACAA-CAGGACTCATTGCTATATGTTTT--C-AAT---CGGCCCTTCATTAAAAATGACCA--GCAGAACCGCCCATTTTCAACATGCCTtg
gi|17 : cGAATGG-----GTATTAACC-TGGTC--AGACAA-AAGGACTGATTGCAAAATTTTTTTTC-AGT---AGGTT-TTAATTGCAAATGACCA--GCTGGACAACCCGTTTTCGACATGCCT
gi|18 : AAATTAAAAAATATTGTTCAT-TTCCTCTCACC---CGACTGAG--TCTGAGAAAGTCTTATTGA-----TCCAAAAGATTTTATCCCGTCATTT---TGGCAA
gi|19 : A-CAGTGGTGTATTTTAGAC-TTGTA-T-GATTAAACA-ATGA----GCTTGCAT-TTTG-CACCAGA---CTTTGCCCCT-GCTATGGGT---CAAGT
gi|2 : cctg-GGCCAAAATATAAA--TATTGTTTGT-TTCCCCTCGCC---GAACCAAG--TCTGAGAAAGTCCCAGCGA-----CCCAAAACTTTTTATTCCGTTATGT---TGGCAAAGTT--TTTATTTT-TTT----------TTAATTCTAGAA--TTT------TCAGAACAGC-TCGGAAG--AAAACTGACCAGGAGTGTTC-A-TCTTTGT-GTTGGTTTT-GATCTA--TT--AGAGG-------AAAAGAGATGGTCTGCTAGATCGGCATGAAGA--AATGTCATCTTCTGGATTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAATTT-CTAT-CA-A-ACAAAAAAAAGGA-----TA-----CATAACCACTTACC--A-GTG-TG--TGTGTAT---ATTAAA-TCTTGCCA--AATCGG----TCTG-GAAGAA-ACAGACTTTA-CAATGTTTTACTTTA-AC-TTGTA-T-GATTAAGCA-ATGAGCT----TGTGT-TTTG-CATGTGG---TTTTGCCCCT-GCTGTAGTC---CAAAT-GACCAC-AA-AGT-TGC-CAT--CTTG-GTTCT-TGT-AAACAT---------ATGC-GAAA-ATCTG-----AATGACGATCTCG------ATT-TG----T--------AATCTA-AAA---------------------A-GG-----ACTAAAACC-TAAAT--GGATAA-TAGGACTGATTGCTAT--GTTTT--C-GAT---TGGTCCTTCATTAAAAGTGACCG--ACAga
gi|20 : aagcctgtacagaaaagtctggaaaactatatattcaCA--GATCGGG---TCTTTGAAGGA-ACGGAATTTA-CAATGTCGTAATGTA-AC-TCGTA-T-GAT
gi|21 : tctctgcaCTACC-------CA-------CCCTCCTCTGC--A---AATGT--AGGCGTC-G-GA-GAGGGCGGAAACAAAC
gi|22 : acAA-TAGGACTAGTTGCTCT---TTTT--C-AAC---CAAACCTTCATTCAAAATGACCG--ACAgaatctttagat
gi|24 : A--GA-----CA-----C------------T--ATATAGT---TGTGTGT---C----A-TCTCGCCA--AATTGG----TCTG-GAAAGA-
gi|25 : CTGAGGCCAAAAGTAAAA--TATTGTTTGT-TTCCCCTCAC
gi|3 : tgCCAGAAGT-T-C-A-GTTT-GT-GTTGGTTTT-GATCTAAAATTAAGAAAT--------------------GCAAGATCAACAGGGAGAGAAATGT---CTTCTA---TAGA----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTG------TACACAAGTT-CT-TTCACA-ATAAAATCA--GATACATTA-----C------------C--G-ATA-TGTGTGTGTGT---C----A-TACCACCA--AATCGG----TCTC-GAAGAA-AAGGAATTTG-CCGTGCTTTCT----GACAT--TA-T-CATTGGACA-ATAA----GCTTGCGT-TTTG-CACCAGG---TGTCGCTCCT-GTCATGGGC---CAAA-TGACCAT-GA-AGT-CTC-CAT--CTTT-G-ATTCTGTAAAATATGGAAAAAAAATGC-GAAATATCCAAGGACAAT------CTCA------ATT-TG----T--------AATCTATGAA-----C--ATAAGACC--TGAATGG-----ACATAATCC-TAAAC--AGACAA-TAAAACTGAATGC-A-ATGTTTT--C-AAT---TGGTCCTTCATAAAAATTGACTG--GCAGGACCACCCATTTTTGACATGTCTGCAA-----CTAAT-GTCATGGGAATTTCATAA-T-GAATAAAATTCTGCTGACATG-----AAAGGG--------GGGGGGGGGGACCAACTCAAAA------ATTT--CTCTACC-------TA-------CCCTCCT---G--A---AATTT--AGG-GTC-A-GAGGAGG--AGAAACAAACATAa
gi|3 : TAAAAA--TAT-GTTTGT-TTCTCCTCCTC---TGAC--tttttagatat
gi|4 : ccagaagttcagtttgtgttggttttgatctaaaattaagaaatgcaagatcaacagggagagaaatgtcttctatagagttaggagtcaacacccgtcacccgtttctttattcagatttgctgcagcgatgtcaccaatttgtacacaagttctttcacaataaaatcagatacattaccgatatgtgtgtgtgtcataccaccaaatcggtctcgaagaaaaggaatttgccgtgctttctgacattatcattggacaataagcttgcgttttgcaccaggtgtcgctcctgtcatgggccaaatgaccatgaagtctccatctttgattctgtaaaatatggaaaaaaaatgcgaaatatccaaggacaatctcaatttgtaatctatgaacataagacctgaatggacataatcctaaacagacaataaaactgaatgcaatgttttcaattggtccttcataaaaattgactggcaggaccacccatttttgacatgtctgcaactaatgtcatgggaatttcataatgaataaaattctgctgacatgaaagggggggggggggaccaactcaaaaatttctctacctaccctcctgaaatttaggTTTACCCAAGTTTCTGATCA-ACATGAGAACA--GA-----TA-----C------------CTCA-CTA-T---TGCGTGTGAGC----AATCCTGCCACGAATCTGCGTATC-G-GAAGAACACAAAATTAAACAATGTTTTATC--AAGCATTGTAATAGATTAGATACATGAACTTGCTT---TAATGA-CACCAGAACATTCCACCTCTTACTGTGCACACCCAAATTGGCCACCGACGGT-CGCATGT--CTTGTACTTC-TGT-AAACAT----------TGCCGCAA-A---A-----AAT------CT-A------ATC-TACA--T--------AAT-TA-CGT-----T--AC---ACA---AAATGG-----ACAATT-CC-CAGCCATGGACAA-GAGGAGTTATTGCTGT---TTCT--CGAAT---TGGTCTTTCATTAAAAATGAACGGAGCAGGACCA-ACATTTTgatat
gi|5 : A-----C------------T--A-AT--T---TGTGCAT---C----A-TATCACCA--AACTGG----GCTG-GAAGGA-CTGAAATTTA-TAATGAGTTAATC-AGAC-TCGTA-T-GTTTAGACA-ATGAGCT----TGCAT-TTTG-CACCAGG---CTTCACCCCT-GCTGTGGAA---CCAATTGTCCTT-GA-AGT-TGT-CAT--CTTG-GCATT-TGT-AAACAT----------T-C-GAAA-ATCTA-----AAT------CACGATGCCAATT-TG----TAAAAAAAAAATCTACAAA-----TGAATG--ACA--TGATTGG-----ACAAAATTA-TTGTC--AGACAA-TAGGACAGACTGCTTTCTGTTTT--C-Agtattttcatgatgtcaagaggaac
gi|6 : tcGAATGG-----ACGAAAACCCTAGGT--GGACAA-TAGGACTGAGTACTA------------ACT---CGCCCGTTCATTAAAAATTACCG--AAAGGAGCTCCCATTTTCGACATGTCTACAACTTTGCTAGTGGTCATGGGGATTTCAC-A-TCGAATAAAATTCCGTTGGCACC-----AA-------------------------AA---ATAA------CCCT--TACTACTTACTACATA-------CCCTCCT---CTTATATAATGT--AGG-ATC-ATGA-GAGG--GGAAACAAACAT
gi|7 : gacggCCAAAATCAGAA--TATT---TGTGTTCCAATCGTC---CTACTTAG--TCTGAGAAAG-CCTGCCTA-----CA-GAAAGTTCTTATTCCCTCATTT---TGGCCGAGCA--TAT----T-TTA----------AT---TCC--ATAATTT------GCAGTTGGGGATT-GTACTTC-TAAT-ACCGGAAGT--------GTT-GT-ATT---TTC-GA---AAATTCAAGAAATAATA-AGAAA---GTGGT-TGCTTGATCTACATAGAAA--GATG----CGCTTA---CATG----------GTTAGgattttaaacatcg
gi|8 : a-GGCCAAAATAAATT--TAAAGTTTGT-TTCCTCTCGCCATCTGA----G--TCTGAGAAAGTCTTGCCGA-----CCCAAATGTTTTTATTCAGTCATTT---TGGCAAAGTTGGTTT----T-TTTTATAATCCCGTTA--TCCGGAAAATTT------CCAGTGCTGGATCAATAATTTATAATGACTGGAAGT-TTCAA-TATT-GTCGTTGCTTTC-GATC
gi|9 : atttcatcattcaTG-GACCAAAATTAAAA--TATTGTTT-----CCCCTTGCC---CGACCGAG--TCTTAGAAAGTCCCGCCAATTTTACCCAAATCTTTTTATTCCATCATTTTTATAGCAAA-TA--TTT----T-TTT----------TT---TCTGGAAAATTTCCGCTGCCAGATC--GATCAGTATTTCATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATTAAAAATTGTTGTTGTTTTCTCCTTCACCCGGACTGAGTCGAGAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 2222 11111 111 1111 444444444444444 222222 222222222 444444444444444 1 11 2222 111 4444444444 2222 1 111 55555555555555555555555555555555555555 11111111 2222 2222222222 3333333333 11111 4444444444444444444444444444444444444444444444444444444444444444 11111 1111 1 333333333333333333333333333333333333333333333333 3333333 4444444444 111
lowQualScore : 8 1 55 6 4 777 6666 77 44444 000 99 4444 6 666666666666666 1 0 333333 22 8 3 3 11 22 1 2 222222222 8 8 88 8 0 0 3 6 000000000000000 2 1 0 33 0000 1 777 3333333333 2222 1 0 333 8 8 99 33333333333333333333333333333333333333 88888888 5 66 4444 5 5 1 4 1 99 5 8 4 4 4 5 4 3333333333 5 888 5 888 1 77 1 8888 5 5 77 66 4 5 5 7777777777 5 5 66666 7777777777777777777777777777777777777777777777777777777777777777 4 11111 5 4 1 66 4 8888 66 4 888 1 66 6 3 8 8 6 6 0 333333333333333333333333333333333333333333333333 11 9999 3333333 4444444444 99 6 555 6 99
lowQualScore : . . .. . . ... .... .. ..... ... .. .... . ............... . . ...... .. . . . .. .. . . ......... . . .. . . . . . ............... . . . .. .... . ... .......... .... . . ... . . .. ...................................... ........ . .. .... . . . . . .. . . . . . . . .......... . ... . ... . .. . .... . . .. .. . . . .......... . . ..... ................................................................ . ..... . . . .. . .... .. . ... . .. . . . . . . . ................................................ .. .... ....... .......... .. . ... . ..
lowQualScore : 0 0 55 0 0 888 8888 99 33333 000 22 2222 7 777777777777777 0 8 000000 44 2 8 8 88 22 0 5 888888888 0 0 88 0 8 8 2 5 888888888888888 8 0 2 88 8888 0 555 8888888888 5555 0 0 888 0 0 22 99999999999999999999999999999999999999 00000000 7 99 4444 0 0 7 4 0 88 7 9 4 4 4 0 5 6666666666 0 888 0 888 1 99 7 9999 7 7 99 44 0 7 7 0000000000 7 7 77777 5555555555555555555555555555555555555555555555555555555555555555 6 11111 1 4 0 11 0 8888 11 4 888 4 99 7 2 0 0 0 0 8 000000000000000000000000000000000000000000000000 66 4444 3333333 2222222222 22 7 333 7 22
consensus : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCGA-----CCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACC-----AAAGAG--------A-----------C--------AA-T----ANAAACCTNT--CTACC-------TACCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
Reference ( family-492 ) : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCGA-----CCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACC-----AAAGAG--------A-----------C--------AA------ANAAACCTNT--CTACC-------TACCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
gi|1 : CTG-GGCCAAAATAAATA--TATTGTTTGT-TTCCCCTCGCC---CGA----G--TCTAAGAAAGTCCTGCCAA-----CCCAAAAATTTTTG---AGTCATTT---TGGCGAAGTT--TTT----TTTTT----------TGA--TCGGGAAAATGT------CCAGAGCGAGGTCAGTATTTTATATTGACCAGAAGT-TTC-AGTATT-TT-ATTTTTTTTGGATCCAAATTCAAGAAATAATACAAAAAGAGGTGGTTTGTGAGATTGATCTGGAGA--AAAGT---CATCCA---CAGG----------ATTAG
gi|1 : cttTTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-AT--T---TGTGTGT---C----A-TCCTGCCA--AATTGA----TCTG-GAAGGA-ATGGAATTTT-CAATGTTTTATTTTACAC-TCGTA-T-GATTAGACA-ATGAGCTAGCTTGCATATTTG-CACCAGG---CTTTGCCCCT-GCTGTGGAC---TGAAATGGCCAC-GA-AGT-TGC-CAT--CTTG-GTACT-TGT-AAACGT-----------GC-AAAA-ATTCA-----AAT------CACA------ATCCTG----C--------AAGCTA-AAG-----T--AT---ACACTTTAATGG-----ACAAAAACC-AAGAC--AGACAAATAG-ACTGATTGCTGTATGTTTA--C-AATGATCAATCCTTCATTAAAAATGACCT--ACAGGACTACCCATTTCTGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-TAATTAAATTCTGCTGGCACCAAAAAAAAAAA--------A-----------A--------AA------AAAAACCTTT--TTACC-------TACCCTC---------------G-----------G-GA-GAGG--GGAAACAAACATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcaaacgaaaacagataccaatttgtgtgtcatcctgccaaattgatctggaaggaatggaattttcaatgttttattttacactcgtatgattagacaatgagctagcttgcatatttgcaccaggctttgcccctgctgtggactgaaatggccacgaagttgccatcttggtacttgtaaacgtgcaaaaattcaaatcacaatcctgcaagctaaagtatacactttaatggacaaaaaccaagacagacaaatagactgattgctgtatgtttacaatgatcaatccttcattaaaaatgacctacaggactacccatttctgacatgtctgcaactttgctaatggtcatgggaatttcatattaattaaattctgctggcaccaaaaaaaaaaaaaaaaaaaacctttttacctaccctcgggagaggggaaacaaacata
gi|10 : cttctgggccaaaataaatatattgtttgtttcccctcgcccgagtctaagaaagtcctgccaacccaaaaatttttgagtcattttggcgaagtttttttttttgatcgggaaaatgtccagagcgaggtcagtattttatattgaccagaagtttcagtattttattttttttggatccaaattcaagaaataatacaaaaagaggtggtttgtgagattgatctggagaaaagtcatccacaggattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggATTTGGCACCAGG---ATTCACCTGT-GCTGTGGAC---TGAG-------------GT-TGC-CAT--CTTG-GCATT-TGT-AAACAT---------GTGC-AAAA-ATCCA-----AAT------CCTG------ATC-AGTAAAT--------AATCAA-AAAAGTACC--AT---ACA---GAA-GG-----ACAAAATCA-TAGTC--GTACAA-TAGGACAGATTGCTAT
gi|11 : agCTAATAGTCATGGGAATTTCAT-A-TGGAAGAAAG---TGCCGG---C-----AAAGTG--------C-----------CCCCCCCCTAATTTTTTACCTACATGTACCTACCTCA----TGCCCTCCT---CAGA---AATGTACAGG-GTTAG-AA-GATG--GGAAACAAACGTA
gi|12 : ATTTA-CAATGCCTTATTTCAGAC-CTGTA-T-GATTAGACA-ATGAGCT----TGCA-ATTTG-CACCAGG---CTTTGTTCCT-GCTGTGGAC---CGAATTGGTCAC--A-CGTACG---ATTACTT--GTATT---A-AAACAT---------ATAT-GCAG-ATttcttaaatat
gi|13 : agactctAATGGTCATGGGAATTTGAT-ATT-CAAT-AAATTTTGCTGGCACC-----AAAAAATTTTTTTTA-----------C--------CA------ACCAACCTAC--CTACC-------TAGCCTCCT---CCAA---AATTT--AAG-GTCGG-GA-GAGG--GGAAGCAATCATA
gi|13 : TGAAAA--TAT-GATTGC-TTCCCCTCTCC---CGAC--ttttcaaa
gi|14 : aatggtcatgggaatttgatattcaataaattttgctggcaccaaaaaattttttttaccaaccaacctacctacctagcctcctccaaaatttaagGCCAAAATTAAAA--TATAGTTTGT-TTCCCCTTGCC---CAAC--CGACTCTTAGGAAGTCCCACCGA-----CCCAAAAGTTTTTATTCCTTCATTT---CAGCAAAGTT--TTT----T-ATG----------CT---TCCGGAAaa
gi|15 : ACACAAGTT-CTAT-CA-A-ATGAAAACA--GA-----TATACCTC------------C--T-AT--T---TGTGTGT---T----A-GCTTGCCC--CATTGGACA-TCTT-G-------C---ATTTA-CAATGATTTATTTAAGAC-TTGTA-T-GTTTAGACA-ATAAGCT-tctttgattcgggggca
gi|16 : -AAA-----T--AT---A----TGAAGGGGATCAACAAAAACC-TAGTG--GGACAA-CAGGACTCATTGCTATATGTTTT--C-AAT---CGGCCCTTCATTAAAAATGACCA--GCAGAACCGCCCATTTTCAACATGCCTtg
gi|17 : cGAATGG-----GTATTAACC-TGGTC--AGACAA-AAGGACTGATTGCAAAATTTTTTTTC-AGT---AGGTT-TTAATTGCAAATGACCA--GCTGGACAACCCGTTTTCGACATGCCT
gi|18 : AAATTAAAAAATATTGTTCAT-TTCCTCTCACC---CGACTGAG--TCTGAGAAAGTCTTATTGA-----TCCAAAAGATTTTATCCCGTCATTT---TGGCAA
gi|19 : A-CAGTGGTGTATTTTAGAC-TTGTA-T-GATTAAACA-ATGA----GCTTGCAT-TTTG-CACCAGA---CTTTGCCCCT-GCTATGGGT---CAAGT
gi|2 : cctg-GGCCAAAATATAAA--TATTGTTTGT-TTCCCCTCGCC---GAACCAAG--TCTGAGAAAGTCCCAGCGA-----CCCAAAACTTTTTATTCCGTTATGT---TGGCAAAGTT--TTTATTTT-TTT----------TTAATTCTAGAA--TTT------TCAGAACAGC-TCGGAAG--AAAACTGACCAGGAGTGTTC-A-TCTTTGT-GTTGGTTTT-GATCTA--TT--AGAGG-------AAAAGAGATGGTCTGCTAGATCGGCATGAAGA--AATGTCATCTTCTGGATTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAATTT-CTAT-CA-A-ACAAAAAAAAGGA-----TA-----CATAACCACTTACC--A-GTG-TG--TGTGTAT---ATTAAA-TCTTGCCA--AATCGG----TCTG-GAAGAA-ACAGACTTTA-CAATGTTTTACTTTA-AC-TTGTA-T-GATTAAGCA-ATGAGCT----TGTGT-TTTG-CATGTGG---TTTTGCCCCT-GCTGTAGTC---CAAAT-GACCAC-AA-AGT-TGC-CAT--CTTG-GTTCT-TGT-AAACAT---------ATGC-GAAA-ATCTG-----AATGACGATCTCG------ATT-TG----T--------AATCTA-AAA---------------------A-GG-----ACTAAAACC-TAAAT--GGATAA-TAGGACTGATTGCTAT--GTTTT--C-GAT---TGGTCCTTCATTAAAAGTGACCG--ACAga
gi|20 : aagcctgtacagaaaagtctggaaaactatatattcaCA--GATCGGG---TCTTTGAAGGA-ACGGAATTTA-CAATGTCGTAATGTA-AC-TCGTA-T-GAT
gi|21 : tctctgca--CTACC-------CACCCTCCTCTGC--A---AATGT--AGGCGTC-G-GA-GAGGGCGGAAACAAAC
gi|22 : acAA-TAGGACTAGTTGCTCT---TTTT--C-AAC---CAAACCTTCATTCAAAATGACCG--ACAgaatctttagat
gi|24 : A--GA-----CA-----C------------T--ATATAGT---TGTGTGT---C----A-TCTCGCCA--AATTGG----TCTG-GAAAGA-
gi|25 : CTGAGGCCAAAAGTAAAA--TATTGTTTGT-TTCCCCTCAC
gi|3 : tgCCAGAAGT-T-C-A-GTTT-GT-GTTGGTTTT-GATCTAAAATTAAGAAAT--------------------GCAAGATCAACAGGGAGAGAAATGT---CTTCTA---TAGA----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTG------TACACAAGTT-CT-TTCACA-ATAAAATCA--GATACATTA-----C------------C--G-ATA-TGTGTGTGTGT---C----A-TACCACCA--AATCGG----TCTC-GAAGAA-AAGGAATTTG-CCGTGCTTTCT----GACAT--TA-T-CATTGGACA-ATAA----GCTTGCGT-TTTG-CACCAGG---TGTCGCTCCT-GTCATGGGC---CAAA-TGACCAT-GA-AGT-CTC-CAT--CTTT-G-ATTCTGTAAAATATGGAAAAAAAATGC-GAAATATCCAAGGACAAT------CTCA------ATT-TG----T--------AATCTATGAA-----C--ATAAGACC--TGAATGG-----ACATAATCC-TAAAC--AGACAA-TAAAACTGAATGC-A-ATGTTTT--C-AAT---TGGTCCTTCATAAAAATTGACTG--GCAGGACCACCCATTTTTGACATGTCTGCAA-----CTAAT-GTCATGGGAATTTCATAA-T-GAATAAAATTCTGCTGACATG-----AAAGGG--------GGGGGGGGGGACC--------AACTC---AAAAATTTCT--CTACC-------TACCCTCCT---G--A---AATTT--AGG-GTC-A-GAGGAGG--AGAAACAAACATAa
gi|3 : TAAAAA--TAT-GTTTGT-TTCTCCTCCTC---TGAC--tttttagatat
gi|4 : ccagaagttcagtttgtgttggttttgatctaaaattaagaaatgcaagatcaacagggagagaaatgtcttctatagagttaggagtcaacacccgtcacccgtttctttattcagatttgctgcagcgatgtcaccaatttgtacacaagttctttcacaataaaatcagatacattaccgatatgtgtgtgtgtcataccaccaaatcggtctcgaagaaaaggaatttgccgtgctttctgacattatcattggacaataagcttgcgttttgcaccaggtgtcgctcctgtcatgggccaaatgaccatgaagtctccatctttgattctgtaaaatatggaaaaaaaatgcgaaatatccaaggacaatctcaatttgtaatctatgaacataagacctgaatggacataatcctaaacagacaataaaactgaatgcaatgttttcaattggtccttcataaaaattgactggcaggaccacccatttttgacatgtctgcaactaatgtcatgggaatttcataatgaataaaattctgctgacatgaaagggggggggggggaccaactcaaaaatttctctacctaccctcctgaaatttaggTTTACCCAAGTTTCTGATCA-ACATGAGAACA--GA-----TA-----C------------CTCA-CTA-T---TGCGTGTGAGC----AATCCTGCCACGAATCTGCGTATC-G-GAAGAACACAAAATTAAACAATGTTTTATC--AAGCATTGTAATAGATTAGATACATGAACTTGCTT---TAATGA-CACCAGAACATTCCACCTCTTACTGTGCACACCCAAATTGGCCACCGACGGT-CGCATGT--CTTGTACTTC-TGT-AAACAT----------TGCCGCAA-A---A-----AAT------CT-A------ATC-TACA--T--------AAT-TA-CGT-----T--AC---ACA---AAATGG-----ACAATT-CC-CAGCCATGGACAA-GAGGAGTTATTGCTGT---TTCT--CGAAT---TGGTCTTTCATTAAAAATGAACGGAGCAGGACCA-ACATTTTgatat
gi|5 : A-----C------------T--A-AT--T---TGTGCAT---C----A-TATCACCA--AACTGG----GCTG-GAAGGA-CTGAAATTTA-TAATGAGTTAATC-AGAC-TCGTA-T-GTTTAGACA-ATGAGCT----TGCAT-TTTG-CACCAGG---CTTCACCCCT-GCTGTGGAA---CCAATTGTCCTT-GA-AGT-TGT-CAT--CTTG-GCATT-TGT-AAACAT----------T-C-GAAA-ATCTA-----AAT------CACGATGCCAATT-TG----TAAAAAAAAAATCTACAAA-----TGAATG--ACA--TGATTGG-----ACAAAATTA-TTGTC--AGACAA-TAGGACAGACTGCTTTCTGTTTT--C-Agtattttcatgatgtcaagaggaac
gi|6 : tcGAATGG-----ACGAAAACCCTAGGT--GGACAA-TAGGACTGAGTACTA------------ACT---CGCCCGTTCATTAAAAATTACCG--AAAGGAGCTCCCATTTTCGACATGTCTACAACTTTGCTAGTGGTCATGGGGATTTCAC-A-TCGAATAAAATTCCGTTGGCACC-----AA---------------------------------AA------ATAACCCTTA--CTACTTACTACATACCCTCCT---CTTATATAATGT--AGG-ATC-ATGA-GAGG--GGAAACAAACAT
gi|7 : gacggCCAAAATCAGAA--TATT---TGTGTTCCAATCGTC---CTACTTAG--TCTGAGAAAG-CCTGCCTA-----CA-GAAAGTTCTTATTCCCTCATTT---TGGCCGAGCA--TAT----T-TTA----------AT---TCC--ATAATTT------GCAGTTGGGGATT-GTACTTC-TAAT-ACCGGAAGT--------GTT-GT-ATT---TTC-GA---AAATTCAAGAAATAATA-AGAAA---GTGGT-TGCTTGATCTACATAGAAA--GATG----CGCTTA---CATG----------GTTAGgattttaaacatcg
gi|8 : a-GGCCAAAATAAATT--TAAAGTTTGT-TTCCTCTCGCCATCTGA----G--TCTGAGAAAGTCTTGCCGA-----CCCAAATGTTTTTATTCAGTCATTT---TGGCAAAGTTGGTTT----T-TTTTATAATCCCGTTA--TCCGGAAAATTT------CCAGTGCTGGATCAATAATTTATAATGACTGGAAGT-TTCAA-TATT-GTCGTTGCTTTC-GATC
gi|9 : atttcatcattcaTG-GACCAAAATTAAAA--TATTGTTT-----CCCCTTGCC---CGACCGAG--TCTTAGAAAGTCCCGCCAATTTTACCCAAATCTTTTTATTCCATCATTTTTATAGCAAA-TA--TTT----T-TTT----------TT---TCTGGAAAATTTCCGCTGCCAGATC--GATCAGTATTTCATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATTAAAAATTGTTGTTGTTTTCTCCTTCACCCGGACTGAGTCGAGAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 11111 111 1111 444444444444444 222222 222222222 444444444444444 1 11 2222 111 4444444444 2222 1 111 55555555555555555555555555555555555555 11111111 2222 2222222222 3333333333 11111 4444444444444444444444444444444444444444444444444444444444444444 11111 1111 222 222222 4444444444444444444444444444444444444444444444444444 111 22222222 4444444444 111 1
lowQualScore : 8 1 55 0 4 777 6666 77 44444 000 99 4444 6 666666666666666 1 0 333333 22 8 3 3 11 22 1 2 222222222 8 8 88 8 0 0 3 6 000000000000000 2 1 0 33 0000 1 777 3333333333 2222 1 0 333 8 8 99 33333333333333333333333333333333333333 88888888 5 66 4444 5 5 1 4 1 99 5 8 4 4 4 5 4 3333333333 5 888 5 888 1 77 1 8888 5 5 77 66 4 5 5 7777777777 5 5 66666 7777777777777777777777777777777777777777777777777777777777777777 4 11111 5 4 1 66 4 8888 66 4 888 1 66 6 3 8 444 3 0 000000 1111111111111111111111111111111111111111111111111111 111 44444444 4444444444 99 6 111 3 99
lowQualScore : . . .. . . ... .... .. ..... ... .. .... . ............... . . ...... .. . . . .. .. . . ......... . . .. . . . . . ............... . . . .. .... . ... .......... .... . . ... . . .. ...................................... ........ . .. .... . . . . . .. . . . . . . . .......... . ... . ... . .. . .... . . .. .. . . . .......... . . ..... ................................................................ . ..... . . . .. . .... .. . ... . .. . . . ... . . ...... .................................................... ... ........ .......... .. . ... . ..
lowQualScore : 0 0 55 9 0 888 8888 99 33333 000 22 2222 7 777777777777777 0 8 000000 44 2 8 8 88 22 0 5 888888888 0 0 88 0 8 8 2 5 888888888888888 8 0 2 88 8888 0 555 8888888888 5555 0 0 888 0 0 22 99999999999999999999999999999999999999 00000000 7 99 4444 0 0 7 4 0 88 7 9 4 4 4 0 5 6666666666 0 888 0 888 1 99 7 9999 7 7 99 44 0 7 7 0000000000 7 7 77777 5555555555555555555555555555555555555555555555555555555555555555 6 11111 1 4 0 11 0 8888 11 4 888 4 99 7 2 0 000 8 8 222222 9999999999999999999999999999999999999999999999999999 777 22222222 2222222222 22 7 333 3 22
consensus : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-AT-G-AATAAAATTCTGCTGGCACC----AAAGAGA-----------C--------AA--T-----ANNAACCTNT--------CTACCT---AC--------CCTCCT---C--A---AATGTA--GG-GTC-G-GA-GAGG--GGAAACAAACATA
Reference ( family-492 ) : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-AT-G-AATAAAATTCTGCTGGCACC----AAAGAGA-----------C--------AA--T-----ANAAACCTNT--------CTACCT---AC--------CCTCCT---C--A---AATGTA--GG-GTC-G-GA-GAGG--GGAAACAAACATA
gi|1 : CTG-GGCCAAAATAAATA--TATTGTTTGT-TTCCCCTCGCC---CGA----G--TCTAAGAAAGTCCTGCCA-----ACCCAAAAATTTTTG---AGTCATTT---TGGCGAAGTT--TTT----TTTTT----------TGA--TCGGGAAAATGT------CCAGAGCGAGGTCAGTATTTTATATTGACCAGAAGT-TTC-AGTATT-TT-ATTTTTTTTGGATCCAAATTCAAGAAATAATACAAAAAGAGGTGGTTTGTGAGATTGATCTGGAGA--AAAGT---CATCCA---CAGG----------ATTAG
gi|1 : cttTTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-AT--T---TGTGTGT---C----A-TCCTGCCA--AATTGA----TCTG-GAAGGA-ATGGAATTTT-CAATGTTTTATTTTACAC-TCGTA-T-GATTAGACA-ATGAGCTAGCTTGCATATTTG-CACCAGG---CTTTGCCCCT-GCTGTGGAC---TGAAATGGCCAC-GA-AGT-TGC-CAT--CTTG-GTACT-TGT-AAACGT-----------GC-AAAA-ATTCA-----AAT------CACA------ATCCTG----C--------AAGCTA-AAG-----T--AT---ACACTTTAATGG-----ACAAAAACC-AAGAC--AGACAAATAG-ACTGATTGCTGTATGTTTA--C-AATGATCAATCCTTCATTAAAAATGACCT--ACAGGACTACCCATTTCTGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-AT-T-AATTAAATTCTGCTGGCACCAAAAAAAAAAA-----------A--------AA--A-----AAAAACCTTT--------TTACCT---AC--------CCTC---------------G-----------G-GA-GAGG--GGAAACAAACATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcaaacgaaaacagataccaatttgtgtgtcatcctgccaaattgatctggaaggaatggaattttcaatgttttattttacactcgtatgattagacaatgagctagcttgcatatttgcaccaggctttgcccctgctgtggactgaaatggccacgaagttgccatcttggtacttgtaaacgtgcaaaaattcaaatcacaatcctgcaagctaaagtatacactttaatggacaaaaaccaagacagacaaatagactgattgctgtatgtttacaatgatcaatccttcattaaaaatgacctacaggactacccatttctgacatgtctgcaactttgctaatggtcatgggaatttcatattaattaaattctgctggcaccaaaaaaaaaaaaaaaaaaaacctttttacctaccctcgggagaggggaaacaaacata
gi|10 : cttctgggccaaaataaatatattgtttgtttcccctcgcccgagtctaagaaagtcctgccaacccaaaaatttttgagtcattttggcgaagtttttttttttgatcgggaaaatgtccagagcgaggtcagtattttatattgaccagaagtttcagtattttattttttttggatccaaattcaagaaataatacaaaaagaggtggtttgtgagattgatctggagaaaagtcatccacaggattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggATTTGGCACCAGG---ATTCACCTGT-GCTGTGGAC---TGAG-------------GT-TGC-CAT--CTTG-GCATT-TGT-AAACAT---------GTGC-AAAA-ATCCA-----AAT------CCTG------ATC-AGTAAAT--------AATCAA-AAAAGTACC--AT---ACA---GAA-GG-----ACAAAATCA-TAGTC--GTACAA-TAGGACAGATTGCTAT
gi|11 : agCTAATAGTCATGGGAATTTCAT-AT-GGAAGAAAGT---GCCGGCA-------AAGTGC-----------CCCCCCCCTAA--TTTTTTACCTACATGTAC------CTACCTCATGC--------CCTCCT---C--AGA-AATGTACAGG-GTT-A-GAAGATG--GGAAACAAACGTA
gi|12 : ATTTA-CAATGCCTTATTTCAGAC-CTGTA-T-GATTAGACA-ATGAGCT----TGCA-ATTTG-CACCAGG---CTTTGTTCCT-GCTGTGGAC---CGAATTGGTCAC--A-CGTACG---ATTACTT--GTATT---A-AAACAT---------ATAT-GCAG-ATttcttaaatat
gi|13 : agactctAATGGTCATGGGAATTTGAT-AT-TCAATAAA-TTTTGCTGGCACC----AAAAA-A-----------T--------TT--T-----TTTTACCAAC--------CAACCT---ACCTACCTAGCCTCCT---CCAA---AATTTA--AG-GTCGG-GA-GAGG--GGAAGCAATCATA
gi|13 : TGAAAA--TAT-GATTGC-TTCCCCTCTCC---CGAC--ttttcaaa
gi|14 : aatggtcatgggaatttgatattcaataaattttgctggcaccaaaaaattttttttaccaaccaacctacctacctagcctcctccaaaatttaagGCCAAAATTAAAA--TATAGTTTGT-TTCCCCTTGCC---CAAC--CGACTCTTAGGAAGTCCCACCG-----ACCCAAAAGTTTTTATTCCTTCATTT---CAGCAAAGTT--TTT----T-ATG----------CT---TCCGGAAaa
gi|15 : ACACAAGTT-CTAT-CA-A-ATGAAAACA--GA-----TATACCTC------------C--T-AT--T---TGTGTGT---T----A-GCTTGCCC--CATTGGACA-TCTT-G-------C---ATTTA-CAATGATTTATTTAAGAC-TTGTA-T-GTTTAGACA-ATAAGCT-tctttgattcgggggca
gi|16 : -AAA-----T--AT---A----TGAAGGGGATCAACAAAAACC-TAGTG--GGACAA-CAGGACTCATTGCTATATGTTTT--C-AAT---CGGCCCTTCATTAAAAATGACCA--GCAGAACCGCCCATTTTCAACATGCCTtg
gi|17 : cGAATGG-----GTATTAACC-TGGTC--AGACAA-AAGGACTGATTGCAAAATTTTTTTTC-AGT---AGGTT-TTAATTGCAAATGACCA--GCTGGACAACCCGTTTTCGACATGCCT
gi|18 : AAATTAAAAAATATTGTTCAT-TTCCTCTCACC---CGACTGAG--TCTGAGAAAGTCTTATTG-----ATCCAAAAGATTTTATCCCGTCATTT---TGGCAA
gi|19 : A-CAGTGGTGTATTTTAGAC-TTGTA-T-GATTAAACA-ATGA----GCTTGCAT-TTTG-CACCAGA---CTTTGCCCCT-GCTATGGGT---CAAGT
gi|2 : cctg-GGCCAAAATATAAA--TATTGTTTGT-TTCCCCTCGCC---GAACCAAG--TCTGAGAAAGTCCCAGCG-----ACCCAAAACTTTTTATTCCGTTATGT---TGGCAAAGTT--TTTATTTT-TTT----------TTAATTCTAGAA--TTT------TCAGAACAGC-TCGGAAG--AAAACTGACCAGGAGTGTTC-A-TCTTTGT-GTTGGTTTT-GATCTA--TT--AGAGG-------AAAAGAGATGGTCTGCTAGATCGGCATGAAGA--AATGTCATCTTCTGGATTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAATTT-CTAT-CA-A-ACAAAAAAAAGGA-----TA-----CATAACCACTTACC--A-GTG-TG--TGTGTAT---ATTAAA-TCTTGCCA--AATCGG----TCTG-GAAGAA-ACAGACTTTA-CAATGTTTTACTTTA-AC-TTGTA-T-GATTAAGCA-ATGAGCT----TGTGT-TTTG-CATGTGG---TTTTGCCCCT-GCTGTAGTC---CAAAT-GACCAC-AA-AGT-TGC-CAT--CTTG-GTTCT-TGT-AAACAT---------ATGC-GAAA-ATCTG-----AATGACGATCTCG------ATT-TG----T--------AATCTA-AAA---------------------A-GG-----ACTAAAACC-TAAAT--GGATAA-TAGGACTGATTGCTAT--GTTTT--C-GAT---TGGTCCTTCATTAAAAGTGACCG--ACAga
gi|20 : aagcctgtacagaaaagtctggaaaactatatattcaCA--GATCGGG---TCTTTGAAGGA-ACGGAATTTA-CAATGTCGTAATGTA-AC-TCGTA-T-GAT
gi|21 : tctctgca--------CTACCC---AC--------CCTCCTCTGC--A---AATGTA--GGCGTC-G-GA-GAGGGCGGAAACAAAC
gi|22 : acAA-TAGGACTAGTTGCTCT---TTTT--C-AAC---CAAACCTTCATTCAAAATGACCG--ACAgaatctttagat
gi|24 : A--GA-----CA-----C------------T--ATATAGT---TGTGTGT---C----A-TCTCGCCA--AATTGG----TCTG-GAAAGA-
gi|25 : CTGAGGCCAAAAGTAAAA--TATTGTTTGT-TTCCCCTCAC
gi|3 : tgCCAGAAGT-T-C-A-GTTT-GT-GTTGGTTTT-GATCTAAAATTAAGAAAT--------------------GCAAGATCAACAGGGAGAGAAATGT---CTTCTA---TAGA----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTG------TACACAAGTT-CT-TTCACA-ATAAAATCA--GATACATTA-----C------------C--G-ATA-TGTGTGTGTGT---C----A-TACCACCA--AATCGG----TCTC-GAAGAA-AAGGAATTTG-CCGTGCTTTCT----GACAT--TA-T-CATTGGACA-ATAA----GCTTGCGT-TTTG-CACCAGG---TGTCGCTCCT-GTCATGGGC---CAAA-TGACCAT-GA-AGT-CTC-CAT--CTTT-G-ATTCTGTAAAATATGGAAAAAAAATGC-GAAATATCCAAGGACAAT------CTCA------ATT-TG----T--------AATCTATGAA-----C--ATAAGACC--TGAATGG-----ACATAATCC-TAAAC--AGACAA-TAAAACTGAATGC-A-ATGTTTT--C-AAT---TGGTCCTTCATAAAAATTGACTG--GCAGGACCACCCATTTTTGACATGTCTGCAA-----CTAAT-GTCATGGGAATTTCATAAT-G-AATAAAATTCTGCTGACATG----AAAGGGGGGGGGGGGGACC--------AACTC-----AAAAATTTCT--------CTACCT---AC--------CCTCCT---G--A---AATTTA--GG-GTC-A-GAGGAGG--AGAAACAAACATAa
gi|3 : TAAAAA--TAT-GTTTGT-TTCTCCTCCTC---TGAC--tttttagatat
gi|4 : ccagaagttcagtttgtgttggttttgatctaaaattaagaaatgcaagatcaacagggagagaaatgtcttctatagagttaggagtcaacacccgtcacccgtttctttattcagatttgctgcagcgatgtcaccaatttgtacacaagttctttcacaataaaatcagatacattaccgatatgtgtgtgtgtcataccaccaaatcggtctcgaagaaaaggaatttgccgtgctttctgacattatcattggacaataagcttgcgttttgcaccaggtgtcgctcctgtcatgggccaaatgaccatgaagtctccatctttgattctgtaaaatatggaaaaaaaatgcgaaatatccaaggacaatctcaatttgtaatctatgaacataagacctgaatggacataatcctaaacagacaataaaactgaatgcaatgttttcaattggtccttcataaaaattgactggcaggaccacccatttttgacatgtctgcaactaatgtcatgggaatttcataatgaataaaattctgctgacatgaaagggggggggggggaccaactcaaaaatttctctacctaccctcctgaaatttaggTTTACCCAAGTTTCTGATCA-ACATGAGAACA--GA-----TA-----C------------CTCA-CTA-T---TGCGTGTGAGC----AATCCTGCCACGAATCTGCGTATC-G-GAAGAACACAAAATTAAACAATGTTTTATC--AAGCATTGTAATAGATTAGATACATGAACTTGCTT---TAATGA-CACCAGAACATTCCACCTCTTACTGTGCACACCCAAATTGGCCACCGACGGT-CGCATGT--CTTGTACTTC-TGT-AAACAT----------TGCCGCAA-A---A-----AAT------CT-A------ATC-TACA--T--------AAT-TA-CGT-----T--AC---ACA---AAATGG-----ACAATT-CC-CAGCCATGGACAA-GAGGAGTTATTGCTGT---TTCT--CGAAT---TGGTCTTTCATTAAAAATGAACGGAGCAGGACCA-ACATTTTgatat
gi|5 : A-----C------------T--A-AT--T---TGTGCAT---C----A-TATCACCA--AACTGG----GCTG-GAAGGA-CTGAAATTTA-TAATGAGTTAATC-AGAC-TCGTA-T-GTTTAGACA-ATGAGCT----TGCAT-TTTG-CACCAGG---CTTCACCCCT-GCTGTGGAA---CCAATTGTCCTT-GA-AGT-TGT-CAT--CTTG-GCATT-TGT-AAACAT----------T-C-GAAA-ATCTA-----AAT------CACGATGCCAATT-TG----TAAAAAAAAAATCTACAAA-----TGAATG--ACA--TGATTGG-----ACAAAATTA-TTGTC--AGACAA-TAGGACAGACTGCTTTCTGTTTT--C-Agtattttcatgatgtcaagaggaac
gi|6 : tcGAATGG-----ACGAAAACCCTAGGT--GGACAA-TAGGACTGAGTACTA------------ACT---CGCCCGTTCATTAAAAATTACCG--AAAGGAGCTCCCATTTTCGACATGTCTACAACTTTGCTAGTGGTCATGGGGATTTCAC-ATCG-AATAAAATTCCGTTGGCACC----AAA------------------------AA--T--------AACCCTTACTACTTACTACAT---AC--------CCTCCT---CTTATATAATGTA--GG-ATC-ATGA-GAGG--GGAAACAAACAT
gi|7 : gacggCCAAAATCAGAA--TATT---TGTGTTCCAATCGTC---CTACTTAG--TCTGAGAAAG-CCTGCCT-----ACA-GAAAGTTCTTATTCCCTCATTT---TGGCCGAGCA--TAT----T-TTA----------AT---TCC--ATAATTT------GCAGTTGGGGATT-GTACTTC-TAAT-ACCGGAAGT--------GTT-GT-ATT---TTC-GA---AAATTCAAGAAATAATA-AGAAA---GTGGT-TGCTTGATCTACATAGAAA--GATG----CGCTTA---CATG----------GTTAGgattttaaacatcg
gi|8 : a-GGCCAAAATAAATT--TAAAGTTTGT-TTCCTCTCGCCATCTGA----G--TCTGAGAAAGTCTTGCCG-----ACCCAAATGTTTTTATTCAGTCATTT---TGGCAAAGTTGGTTT----T-TTTTATAATCCCGTTA--TCCGGAAAATTT------CCAGTGCTGGATCAATAATTTATAATGACTGGAAGT-TTCAA-TATT-GTCGTTGCTTTC-GATC
gi|9 : atttcatcattcaTG-GACCAAAATTAAAA--TAT----TGT-TTCCCCTTGCC---CGACCGAG--TCTTAGAAAGTCCCGCCAATTTTACCCAAATCTTTTTATTCCATCATTTTTATAGCAAA-TA--TTT----T-TTT----------TT---TCTGGAAAATTTCCGCTGCCAGATC--GATCAGTATTTCATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATTAAAAATTGTTGTTGTTTTCTCCTTCACCCGGACTGAGTCGAGAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 1 2222 11111 111 1111 444444444444444 222222 222222222 444444444444444 1 11 2222 111 4444444444 2222 1 111 55555555555555555555555555555555555555 11111111 2222 2222222222 3333333333 11111 4444444444444444444444444444444444444444444444444444444444444444 11111 1111 1 1111 33333333333333333333333333333333333333 111 4444444444 111
lowQualScore : 8 1 55 0 4 777 6666 77 44444 000 99 4444 6 666666666666666 1 0 333333 22 8 3 3 11 22 1 2 222222222 8 8 88 8 0 0 3 6 000000000000000 2 1 0 33 0000 1 777 3333333333 2222 1 0 333 8 8 99 33333333333333333333333333333333333333 88888888 5 66 4444 5 5 1 4 1 99 5 8 4 4 4 5 4 3333333333 5 888 5 888 1 77 1 8888 5 5 77 66 4 5 5 7777777777 5 5 66666 7777777777777777777777777777777777777777777777777777777777777777 4 11111 5 4 1 66 4 8888 66 4 888 1 66 6 3 8 8 6 6 0 7777 99999999999999999999999999999999999999 22 0 9999 111 4444444444 99 6 555 6 99
lowQualScore : . . .. . . ... .... .. ..... ... .. .... . ............... . . ...... .. . . . .. .. . . ......... . . .. . . . . . ............... . . . .. .... . ... .......... .... . . ... . . .. ...................................... ........ . .. .... . . . . . .. . . . . . . . .......... . ... . ... . .. . .... . . .. .. . . . .......... . . ..... ................................................................ . ..... . . . .. . .... .. . ... . .. . . . . . . . .... ...................................... .. . .... ... .......... .. . ... . ..
lowQualScore : 0 0 55 9 0 888 8888 99 33333 000 22 2222 7 777777777777777 0 8 000000 44 2 8 8 88 22 0 5 888888888 0 0 88 0 8 8 2 5 888888888888888 8 0 2 88 8888 0 555 8888888888 5555 0 0 888 0 0 22 99999999999999999999999999999999999999 00000000 7 99 4444 0 0 7 4 0 88 7 9 4 4 4 0 5 6666666666 0 888 0 888 1 99 7 9999 7 7 99 44 0 7 7 0000000000 7 7 77777 5555555555555555555555555555555555555555555555555555555555555555 6 11111 1 4 0 11 0 8888 11 4 888 4 99 7 2 0 0 0 0 8 0000 00000000000000000000000000000000000000 00 8 4444 777 2222222222 22 7 333 7 22
consensus : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACC----AAAAAG--------A-----------C--------AA-T---TACNAACCTNT--CTACC---TACCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
Reference ( family-492 ) : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACC----AAAGAG--------A-----------C--------AA-----TANNAACCTNT--CTACC---TACCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
gi|1 : CTG-GGCCAAAATAAATA--TATTGTTTGT-TTCCCCTCGCC---CGA----G--TCTAAGAAAGTCCTGCCA-----ACCCAAAAATTTTTG---AGTCATTT---TGGCGAAGTT--TTT----TTTTT----------TGA--TCGGGAAAATGT------CCAGAGCGAGGTCAGTATTTTATATTGACCAGAAGT-TTC-AGTATT-TT-ATTTTTTTTGGATCCAAATTCAAGAAATAATACAAAAAGAGGTGGTTTGTGAGATTGATCTGGAGA--AAAGT---CATCCA---CAGG----------ATTAG
gi|1 : cttTTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-AT--T---TGTGTGT---C----A-TCCTGCCA--AATTGA----TCTG-GAAGGA-ATGGAATTTT-CAATGTTTTATTTTACAC-TCGTA-T-GATTAGACA-ATGAGCTAGCTTGCATATTTG-CACCAGG---CTTTGCCCCT-GCTGTGGAC---TGAAATGGCCAC-GA-AGT-TGC-CAT--CTTG-GTACT-TGT-AAACGT-----------GC-AAAA-ATTCA-----AAT------CACA------ATCCTG----C--------AAGCTA-AAG-----T--AT---ACACTTTAATGG-----ACAAAAACC-AAGAC--AGACAAATAG-ACTGATTGCTGTATGTTTA--C-AATGATCAATCCTTCATTAAAAATGACCT--ACAGGACTACCCATTTCTGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-TAATTAAATTCTGCTGGCACCAAAAAAAAAA--------A-----------A--------AA-----AAAAAACCTTT--TTACC---TACCCTC---------------G-----------G-GA-GAGG--GGAAACAAACATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcaaacgaaaacagataccaatttgtgtgtcatcctgccaaattgatctggaaggaatggaattttcaatgttttattttacactcgtatgattagacaatgagctagcttgcatatttgcaccaggctttgcccctgctgtggactgaaatggccacgaagttgccatcttggtacttgtaaacgtgcaaaaattcaaatcacaatcctgcaagctaaagtatacactttaatggacaaaaaccaagacagacaaatagactgattgctgtatgtttacaatgatcaatccttcattaaaaatgacctacaggactacccatttctgacatgtctgcaactttgctaatggtcatgggaatttcatattaattaaattctgctggcaccaaaaaaaaaaaaaaaaaaaacctttttacctaccctcgggagaggggaaacaaacata
gi|10 : cttctgggccaaaataaatatattgtttgtttcccctcgcccgagtctaagaaagtcctgccaacccaaaaatttttgagtcattttggcgaagtttttttttttgatcgggaaaatgtccagagcgaggtcagtattttatattgaccagaagtttcagtattttattttttttggatccaaattcaagaaataatacaaaaagaggtggtttgtgagattgatctggagaaaagtcatccacaggattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggATTTGGCACCAGG---ATTCACCTGT-GCTGTGGAC---TGAG-------------GT-TGC-CAT--CTTG-GCATT-TGT-AAACAT---------GTGC-AAAA-ATCCA-----AAT------CCTG------ATC-AGTAAAT--------AATCAA-AAAAGTACC--AT---ACA---GAA-GG-----ACAAAATCA-TAGTC--GTACAA-TAGGACAGATTGCTAT
gi|11 : agCTAATAGTCATGGGAATTTCAT-A-TGGAAGAAAG---TGCCGG---C----AAAGTG--------C-----------CCCCCCCCTAATTTTTTACCTACATGTACCTACCTCATGCCCTCCT---CAGA---AATGTACAGG-GTTAG-AA-GATG--GGAAACAAACGTA
gi|12 : ATTTA-CAATGCCTTATTTCAGAC-CTGTA-T-GATTAGACA-ATGAGCT----TGCA-ATTTG-CACCAGG---CTTTGTTCCT-GCTGTGGAC---CGAATTGGTCAC--A-CGTACG---ATTACTT--GTATT---A-AAACAT---------ATAT-GCAG-ATttcttaaatat
gi|13 : agactctAATGGTCATGGGAATTTGAT-ATT-CAAT-AAATTTTGCTGGCACC----AAAAAATTTTTTTTA-----------C--------CA------ACCAACCTAC--CTACC---TAGCCTCCT---CCAA---AATTT--AAG-GTCGG-GA-GAGG--GGAAGCAATCATA
gi|13 : TGAAAA--TAT-GATTGC-TTCCCCTCTCC---CGAC--ttttcaaa
gi|14 : aatggtcatgggaatttgatattcaataaattttgctggcaccaaaaaattttttttaccaaccaacctacctacctagcctcctccaaaatttaagGCCAAAATTAAAA--TATAGTTTGT-TTCCCCTTGCC---CAAC--CGACTCTTAGGAAGTCCCACCG-----ACCCAAAAGTTTTTATTCCTTCATTT---CAGCAAAGTT--TTT----T-ATG----------CT---TCCGGAAaa
gi|15 : ACACAAGTT-CTAT-CA-A-ATGAAAACA--GA-----TATACCTC------------C--T-AT--T---TGTGTGT---T----A-GCTTGCCC--CATTGGACA-TCTT-G-------C---ATTTA-CAATGATTTATTTAAGAC-TTGTA-T-GTTTAGACA-ATAAGCT-tctttgattcgggggca
gi|16 : -AAA-----T--AT---A----TGAAGGGGATCAACAAAAACC-TAGTG--GGACAA-CAGGACTCATTGCTATATGTTTT--C-AAT---CGGCCCTTCATTAAAAATGACCA--GCAGAACCGCCCATTTTCAACATGCCTtg
gi|17 : cGAATGG-----GTATTAACC-TGGTC--AGACAA-AAGGACTGATTGCAAAATTTTTTTTC-AGT---AGGTT-TTAATTGCAAATGACCA--GCTGGACAACCCGTTTTCGACATGCCT
gi|18 : AAATTAAAAAATATTGTTCAT-TTCCTCTCACC---CGACTGAG--TCTGAGAAAGTCTTATTG-----ATCCAAAAGATTTTATCCCGTCATTT---TGGCAA
gi|19 : A-CAGTGGTGTATTTTAGAC-TTGTA-T-GATTAAACA-ATGA----GCTTGCAT-TTTG-CACCAGA---CTTTGCCCCT-GCTATGGGT---CAAGT
gi|2 : cctg-GGCCAAAATATAAA--TATTGTTTGT-TTCCCCTCGCC---GAACCAAG--TCTGAGAAAGTCCCAGCG-----ACCCAAAACTTTTTATTCCGTTATGT---TGGCAAAGTT--TTTATTTT-TTT----------TTAATTCTAGAA--TTT------TCAGAACAGC-TCGGAAG--AAAACTGACCAGGAGTGTTC-A-TCTTTGT-GTTGGTTTT-GATCTA--TT--AGAGG-------AAAAGAGATGGTCTGCTAGATCGGCATGAAGA--AATGTCATCTTCTGGATTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAATTT-CTAT-CA-A-ACAAAAAAAAGGA-----TA-----CATAACCACTTACC--A-GTG-TG--TGTGTAT---ATTAAA-TCTTGCCA--AATCGG----TCTG-GAAGAA-ACAGACTTTA-CAATGTTTTACTTTA-AC-TTGTA-T-GATTAAGCA-ATGAGCT----TGTGT-TTTG-CATGTGG---TTTTGCCCCT-GCTGTAGTC---CAAAT-GACCAC-AA-AGT-TGC-CAT--CTTG-GTTCT-TGT-AAACAT---------ATGC-GAAA-ATCTG-----AATGACGATCTCG------ATT-TG----T--------AATCTA-AAA---------------------A-GG-----ACTAAAACC-TAAAT--GGATAA-TAGGACTGATTGCTAT--GTTTT--C-GAT---TGGTCCTTCATTAAAAGTGACCG--ACAga
gi|20 : aagcctgtacagaaaagtctggaaaactatatattcaCA--GATCGGG---TCTTTGAAGGA-ACGGAATTTA-CAATGTCGTAATGTA-AC-TCGTA-T-GAT
gi|21 : tctctgca--CTACC---CACCCTCCTCTGC--A---AATGT--AGGCGTC-G-GA-GAGGGCGGAAACAAAC
gi|22 : acAA-TAGGACTAGTTGCTCT---TTTT--C-AAC---CAAACCTTCATTCAAAATGACCG--ACAgaatctttagat
gi|24 : A--GA-----CA-----C------------T--ATATAGT---TGTGTGT---C----A-TCTCGCCA--AATTGG----TCTG-GAAAGA-
gi|25 : CTGAGGCCAAAAGTAAAA--TATTGTTTGT-TTCCCCTCAC
gi|3 : tgCCAGAAGT-T-C-A-GTTT-GT-GTTGGTTTT-GATCTAAAATTAAGAAAT--------------------GCAAGATCAACAGGGAGAGAAATGT---CTTCTA---TAGA----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTG------TACACAAGTT-CT-TTCACA-ATAAAATCA--GATACATTA-----C------------C--G-ATA-TGTGTGTGTGT---C----A-TACCACCA--AATCGG----TCTC-GAAGAA-AAGGAATTTG-CCGTGCTTTCT----GACAT--TA-T-CATTGGACA-ATAA----GCTTGCGT-TTTG-CACCAGG---TGTCGCTCCT-GTCATGGGC---CAAA-TGACCAT-GA-AGT-CTC-CAT--CTTT-G-ATTCTGTAAAATATGGAAAAAAAATGC-GAAATATCCAAGGACAAT------CTCA------ATT-TG----T--------AATCTATGAA-----C--ATAAGACC--TGAATGG-----ACATAATCC-TAAAC--AGACAA-TAAAACTGAATGC-A-ATGTTTT--C-AAT---TGGTCCTTCATAAAAATTGACTG--GCAGGACCACCCATTTTTGACATGTCTGCAA-----CTAAT-GTCATGGGAATTTCATAA-T-GAATAAAATTCTGCTGACATG----AAAGGG--------GGGGGGGGGGACC--------AACT---CAAAAATTTCT--CTACC---TACCCTCCT---G--A---AATTT--AGG-GTC-A-GAGGAGG--AGAAACAAACATAa
gi|3 : TAAAAA--TAT-GTTTGT-TTCTCCTCCTC---TGAC--tttttagatat
gi|4 : ccagaagttcagtttgtgttggttttgatctaaaattaagaaatgcaagatcaacagggagagaaatgtcttctatagagttaggagtcaacacccgtcacccgtttctttattcagatttgctgcagcgatgtcaccaatttgtacacaagttctttcacaataaaatcagatacattaccgatatgtgtgtgtgtcataccaccaaatcggtctcgaagaaaaggaatttgccgtgctttctgacattatcattggacaataagcttgcgttttgcaccaggtgtcgctcctgtcatgggccaaatgaccatgaagtctccatctttgattctgtaaaatatggaaaaaaaatgcgaaatatccaaggacaatctcaatttgtaatctatgaacataagacctgaatggacataatcctaaacagacaataaaactgaatgcaatgttttcaattggtccttcataaaaattgactggcaggaccacccatttttgacatgtctgcaactaatgtcatgggaatttcataatgaataaaattctgctgacatgaaagggggggggggggaccaactcaaaaatttctctacctaccctcctgaaatttaggTTTACCCAAGTTTCTGATCA-ACATGAGAACA--GA-----TA-----C------------CTCA-CTA-T---TGCGTGTGAGC----AATCCTGCCACGAATCTGCGTATC-G-GAAGAACACAAAATTAAACAATGTTTTATC--AAGCATTGTAATAGATTAGATACATGAACTTGCTT---TAATGA-CACCAGAACATTCCACCTCTTACTGTGCACACCCAAATTGGCCACCGACGGT-CGCATGT--CTTGTACTTC-TGT-AAACAT----------TGCCGCAA-A---A-----AAT------CT-A------ATC-TACA--T--------AAT-TA-CGT-----T--AC---ACA---AAATGG-----ACAATT-CC-CAGCCATGGACAA-GAGGAGTTATTGCTGT---TTCT--CGAAT---TGGTCTTTCATTAAAAATGAACGGAGCAGGACCA-ACATTTTgatat
gi|5 : A-----C------------T--A-AT--T---TGTGCAT---C----A-TATCACCA--AACTGG----GCTG-GAAGGA-CTGAAATTTA-TAATGAGTTAATC-AGAC-TCGTA-T-GTTTAGACA-ATGAGCT----TGCAT-TTTG-CACCAGG---CTTCACCCCT-GCTGTGGAA---CCAATTGTCCTT-GA-AGT-TGT-CAT--CTTG-GCATT-TGT-AAACAT----------T-C-GAAA-ATCTA-----AAT------CACGATGCCAATT-TG----TAAAAAAAAAATCTACAAA-----TGAATG--ACA--TGATTGG-----ACAAAATTA-TTGTC--AGACAA-TAGGACAGACTGCTTTCTGTTTT--C-Agtattttcatgatgtcaagaggaac
gi|6 : tcGAATGG-----ACGAAAACCCTAGGT--GGACAA-TAGGACTGAGTACTA------------ACT---CGCCCGTTCATTAAAAATTACCG--AAAGGAGCTCCCATTTTCGACATGTCTACAACTTTGCTAGTGGTCATGGGGATTTCAC-A-TCGAATAAAATTCCGTTGGCACC----AAAAAT--------AAC---------C--------CT-----TACTA--CTTA--CTACA---TACCCTCCT---CTTATATAATGT--AGG-ATC-ATGA-GAGG--GGAAACAAACAT
gi|7 : gacggCCAAAATCAGAA--TATT---TGTGTTCCAATCGTC---CTACTTAG--TCTGAGAAAG-CCTGCCT-----ACA-GAAAGTTCTTATTCCCTCATTT---TGGCCGAGCA--TAT----T-TTA----------AT---TCC--ATAATTT------GCAGTTGGGGATT-GTACTTC-TAAT-ACCGGAAGT--------GTT-GT-ATT---TTC-GA---AAATTCAAGAAATAATA-AGAAA---GTGGT-TGCTTGATCTACATAGAAA--GATG----CGCTTA---CATG----------GTTAGgattttaaacatcg
gi|8 : a-GGCCAAAATAAATT--TAAAGTTTGT-TTCCTCTCGCCATCTGA----G--TCTGAGAAAGTCTTGCCG-----ACCCAAATGTTTTTATTCAGTCATTT---TGGCAAAGTTGGTTT----T-TTTTATAATCCCGTTA--TCCGGAAAATTT------CCAGTGCTGGATCAATAATTTATAATGACTGGAAGT-TTCAA-TATT-GTCGTTGCTTTC-GATC
gi|9 : atttcatcattcaTG-GACCAAAATTAAAA--TAT----TGT-TTCCCCTTGCC---CGACCGAG--TCTTAGAAAGTCCCGCCAATTTTACCCAAATCTTTTTATTCCATCATTTTTATAGCAAA-TA--TTT----T-TTT----------TT---TCTGGAAAATTTCCGCTGCCAGATC--GATCAGTATTTCATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATTAAAAATTGTTGTTGTTTTCTCCTTCACCCGGACTGAGTCGAGAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 1 2222 11111 111 1111 444444444444444 222222 222222222 444444444444444 1 11 2222 111 4444444444 2222 1 111 55555555555555555555555555555555555555 11111111 2222 2222222222 3333333333 11111 4444444444444444444444444444444444444444444444444444444444444444 11111 1111 1 111 333333333333333333333333333333333333333333 111 4444444444 111
lowQualScore : 8 1 55 0 4 777 6666 77 44444 000 99 4444 6 666666666666666 1 0 333333 22 8 3 3 11 22 1 2 222222222 8 8 88 8 0 0 3 6 000000000000000 2 1 0 33 0000 1 777 3333333333 2222 1 0 333 8 8 99 33333333333333333333333333333333333333 88888888 5 66 4444 5 5 1 4 1 99 5 8 4 4 4 5 4 3333333333 5 888 5 888 1 77 1 8888 5 5 77 66 4 5 5 7777777777 5 5 66666 7777777777777777777777777777777777777777777777777777777777777777 4 11111 5 4 1 66 4 8888 66 4 888 1 66 6 3 8 8 6 6 0 444 666666666666666666666666666666666666666666 1 0 9999 111 4444444444 99 6 555 6 99
lowQualScore : . . .. . . ... .... .. ..... ... .. .... . ............... . . ...... .. . . . .. .. . . ......... . . .. . . . . . ............... . . . .. .... . ... .......... .... . . ... . . .. ...................................... ........ . .. .... . . . . . .. . . . . . . . .......... . ... . ... . .. . .... . . .. .. . . . .......... . . ..... ................................................................ . ..... . . . .. . .... .. . ... . .. . . . . . . . ... .......................................... . . .... ... .......... .. . ... . ..
lowQualScore : 0 0 55 9 0 888 8888 99 33333 000 22 2222 7 777777777777777 0 8 000000 44 2 8 8 88 22 0 5 888888888 0 0 88 0 8 8 2 5 888888888888888 8 0 2 88 8888 0 555 8888888888 5555 0 0 888 0 0 22 99999999999999999999999999999999999999 00000000 7 99 4444 0 0 7 4 0 88 7 9 4 4 4 0 5 6666666666 0 888 0 888 1 99 7 9999 7 7 99 44 0 7 7 0000000000 7 7 77777 5555555555555555555555555555555555555555555555555555555555555555 6 11111 1 4 0 11 0 8888 11 4 888 4 99 7 2 0 0 0 0 8 000 000000000000000000000000000000000000000000 0 8 4444 777 2222222222 22 7 333 7 22
consensus : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACC---AAAAA-GA-----------C--------AA----TT----------ACNAACCTNT--CTACC---TACCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
Reference ( family-492 ) : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACC---AAAAA-GA-----------C--------AA----TT----------ACNAACCTNT--CTACC---TACCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
gi|1 : CTG-GGCCAAAATAAATA--TATTGTTTGT-TTCCCCTCGCC---CGA----G--TCTAAGAAAGTCCTGCCA-----ACCCAAAAATTTTTG---AGTCATTT---TGGCGAAGTT--TTT----TTTTT----------TGA--TCGGGAAAATGT------CCAGAGCGAGGTCAGTATTTTATATTGACCAGAAGT-TTC-AGTATT-TT-ATTTTTTTTGGATCCAAATTCAAGAAATAATACAAAAAGAGGTGGTTTGTGAGATTGATCTGGAGA--AAAGT---CATCCA---CAGG----------ATTAG
gi|1 : cttTTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-AT--T---TGTGTGT---C----A-TCCTGCCA--AATTGA----TCTG-GAAGGA-ATGGAATTTT-CAATGTTTTATTTTACAC-TCGTA-T-GATTAGACA-ATGAGCTAGCTTGCATATTTG-CACCAGG---CTTTGCCCCT-GCTGTGGAC---TGAAATGGCCAC-GA-AGT-TGC-CAT--CTTG-GTACT-TGT-AAACGT-----------GC-AAAA-ATTCA-----AAT------CACA------ATCCTG----C--------AAGCTA-AAG-----T--AT---ACACTTTAATGG-----ACAAAAACC-AAGAC--AGACAAATAG-ACTGATTGCTGTATGTTTA--C-AATGATCAATCCTTCATTAAAAATGACCT--ACAGGACTACCCATTTCTGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-TAATTAAATTCTGCTGGCACCAAAAAAAA-AA-----------A--------AA----AA----------AAAAACCTTT--TTACC---TACCCTC---------------G-----------G-GA-GAGG--GGAAACAAACATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcaaacgaaaacagataccaatttgtgtgtcatcctgccaaattgatctggaaggaatggaattttcaatgttttattttacactcgtatgattagacaatgagctagcttgcatatttgcaccaggctttgcccctgctgtggactgaaatggccacgaagttgccatcttggtacttgtaaacgtgcaaaaattcaaatcacaatcctgcaagctaaagtatacactttaatggacaaaaaccaagacagacaaatagactgattgctgtatgtttacaatgatcaatccttcattaaaaatgacctacaggactacccatttctgacatgtctgcaactttgctaatggtcatgggaatttcatattaattaaattctgctggcaccaaaaaaaaaaaaaaaaaaaacctttttacctaccctcgggagaggggaaacaaacata
gi|10 : cttctgggccaaaataaatatattgtttgtttcccctcgcccgagtctaagaaagtcctgccaacccaaaaatttttgagtcattttggcgaagtttttttttttgatcgggaaaatgtccagagcgaggtcagtattttatattgaccagaagtttcagtattttattttttttggatccaaattcaagaaataatacaaaaagaggtggtttgtgagattgatctggagaaaagtcatccacaggattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggATTTGGCACCAGG---ATTCACCTGT-GCTGTGGAC---TGAG-------------GT-TGC-CAT--CTTG-GCATT-TGT-AAACAT---------GTGC-AAAA-ATCCA-----AAT------CCTG------ATC-AGTAAAT--------AATCAA-AAAAGTACC--AT---ACA---GAA-GG-----ACAAAATCA-TAGTC--GTACAA-TAGGACAGATTGCTAT
gi|11 : agCTAATAGTCATGGGAATTTCAT-A-TGGAAGAAAG---TGCCGG---C---AAAGT-GC-----------CCCCCCCCTAATTTTTT----------ACCTACATGTACCTACCTCATGCCCTCCT---CAGA---AATGTACAGG-GTTAG-AA-GATG--GGAAACAAACGTA
gi|12 : ATTTA-CAATGCCTTATTTCAGAC-CTGTA-T-GATTAGACA-ATGAGCT----TGCA-ATTTG-CACCAGG---CTTTGTTCCT-GCTGTGGAC---CGAATTGGTCAC--A-CGTACG---ATTACTT--GTATT---A-AAACAT---------ATAT-GCAG-ATttcttaaatat
gi|13 : agactctAATGGTCATGGGAATTTGAT-ATT-CAAT-AAATTTTGCTGGCACC---AAAA------------------------AA----TTTTTTTTACCAACCAACCTAC--CTACC---TAGCCTCCT---CCAA---AATTT--AAG-GTCGG-GA-GAGG--GGAAGCAATCATA
gi|13 : TGAAAA--TAT-GATTGC-TTCCCCTCTCC---CGAC--ttttcaaa
gi|14 : aatggtcatgggaatttgatattcaataaattttgctggcaccaaaaaattttttttaccaaccaacctacctacctagcctcctccaaaatttaagGCCAAAATTAAAA--TATAGTTTGT-TTCCCCTTGCC---CAAC--CGACTCTTAGGAAGTCCCACCG-----ACCCAAAAGTTTTTATTCCTTCATTT---CAGCAAAGTT--TTT----T-ATG----------CT---TCCGGAAaa
gi|15 : ACACAAGTT-CTAT-CA-A-ATGAAAACA--GA-----TATACCTC------------C--T-AT--T---TGTGTGT---T----A-GCTTGCCC--CATTGGACA-TCTT-G-------C---ATTTA-CAATGATTTATTTAAGAC-TTGTA-T-GTTTAGACA-ATAAGCT-tctttgattcgggggca
gi|16 : -AAA-----T--AT---A----TGAAGGGGATCAACAAAAACC-TAGTG--GGACAA-CAGGACTCATTGCTATATGTTTT--C-AAT---CGGCCCTTCATTAAAAATGACCA--GCAGAACCGCCCATTTTCAACATGCCTtg
gi|17 : cGAATGG-----GTATTAACC-TGGTC--AGACAA-AAGGACTGATTGCAAAATTTTTTTTC-AGT---AGGTT-TTAATTGCAAATGACCA--GCTGGACAACCCGTTTTCGACATGCCT
gi|18 : AAATTAAAAAATATTGTTCAT-TTCCTCTCACC---CGACTGAG--TCTGAGAAAGTCTTATTG-----ATCCAAAAGATTTTATCCCGTCATTT---TGGCAA
gi|19 : A-CAGTGGTGTATTTTAGAC-TTGTA-T-GATTAAACA-ATGA----GCTTGCAT-TTTG-CACCAGA---CTTTGCCCCT-GCTATGGGT---CAAGT
gi|2 : cctg-GGCCAAAATATAAA--TATTGTTTGT-TTCCCCTCGCC---GAACCAAG--TCTGAGAAAGTCCCAGCG-----ACCCAAAACTTTTTATTCCGTTATGT---TGGCAAAGTT--TTTATTTT-TTT----------TTAATTCTAGAA--TTT------TCAGAACAGC-TCGGAAG--AAAACTGACCAGGAGTGTTC-A-TCTTTGT-GTTGGTTTT-GATCTA--TT--AGAGG-------AAAAGAGATGGTCTGCTAGATCGGCATGAAGA--AATGTCATCTTCTGGATTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAATTT-CTAT-CA-A-ACAAAAAAAAGGA-----TA-----CATAACCACTTACC--A-GTG-TG--TGTGTAT---ATTAAA-TCTTGCCA--AATCGG----TCTG-GAAGAA-ACAGACTTTA-CAATGTTTTACTTTA-AC-TTGTA-T-GATTAAGCA-ATGAGCT----TGTGT-TTTG-CATGTGG---TTTTGCCCCT-GCTGTAGTC---CAAAT-GACCAC-AA-AGT-TGC-CAT--CTTG-GTTCT-TGT-AAACAT---------ATGC-GAAA-ATCTG-----AATGACGATCTCG------ATT-TG----T--------AATCTA-AAA---------------------A-GG-----ACTAAAACC-TAAAT--GGATAA-TAGGACTGATTGCTAT--GTTTT--C-GAT---TGGTCCTTCATTAAAAGTGACCG--ACAga
gi|20 : aagcctgtacagaaaagtctggaaaactatatattcaCA--GATCGGG---TCTTTGAAGGA-ACGGAATTTA-CAATGTCGTAATGTA-AC-TCGTA-T-GAT
gi|21 : tctctgca--CTACC---CACCCTCCTCTGC--A---AATGT--AGGCGTC-G-GA-GAGGGCGGAAACAAAC
gi|22 : acAA-TAGGACTAGTTGCTCT---TTTT--C-AAC---CAAACCTTCATTCAAAATGACCG--ACAgaatctttagat
gi|24 : A--GA-----CA-----C------------T--ATATAGT---TGTGTGT---C----A-TCTCGCCA--AATTGG----TCTG-GAAAGA-
gi|25 : CTGAGGCCAAAAGTAAAA--TATTGTTTGT-TTCCCCTCAC
gi|3 : tgCCAGAAGT-T-C-A-GTTT-GT-GTTGGTTTT-GATCTAAAATTAAGAAAT--------------------GCAAGATCAACAGGGAGAGAAATGT---CTTCTA---TAGA----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTG------TACACAAGTT-CT-TTCACA-ATAAAATCA--GATACATTA-----C------------C--G-ATA-TGTGTGTGTGT---C----A-TACCACCA--AATCGG----TCTC-GAAGAA-AAGGAATTTG-CCGTGCTTTCT----GACAT--TA-T-CATTGGACA-ATAA----GCTTGCGT-TTTG-CACCAGG---TGTCGCTCCT-GTCATGGGC---CAAA-TGACCAT-GA-AGT-CTC-CAT--CTTT-G-ATTCTGTAAAATATGGAAAAAAAATGC-GAAATATCCAAGGACAAT------CTCA------ATT-TG----T--------AATCTATGAA-----C--ATAAGACC--TGAATGG-----ACATAATCC-TAAAC--AGACAA-TAAAACTGAATGC-A-ATGTTTT--C-AAT---TGGTCCTTCATAAAAATTGACTG--GCAGGACCACCCATTTTTGACATGTCTGCAA-----CTAAT-GTCATGGGAATTTCATAA-T-GAATAAAATTCTGCTGACATG---AAAGG-GGGGGGGGGGGACC--------AAC---TC----------AAAAATTTCT--CTACC---TACCCTCCT---G--A---AATTT--AGG-GTC-A-GAGGAGG--AGAAACAAACATAa
gi|3 : TAAAAA--TAT-GTTTGT-TTCTCCTCCTC---TGAC--tttttagatat
gi|4 : ccagaagttcagtttgtgttggttttgatctaaaattaagaaatgcaagatcaacagggagagaaatgtcttctatagagttaggagtcaacacccgtcacccgtttctttattcagatttgctgcagcgatgtcaccaatttgtacacaagttctttcacaataaaatcagatacattaccgatatgtgtgtgtgtcataccaccaaatcggtctcgaagaaaaggaatttgccgtgctttctgacattatcattggacaataagcttgcgttttgcaccaggtgtcgctcctgtcatgggccaaatgaccatgaagtctccatctttgattctgtaaaatatggaaaaaaaatgcgaaatatccaaggacaatctcaatttgtaatctatgaacataagacctgaatggacataatcctaaacagacaataaaactgaatgcaatgttttcaattggtccttcataaaaattgactggcaggaccacccatttttgacatgtctgcaactaatgtcatgggaatttcataatgaataaaattctgctgacatgaaagggggggggggggaccaactcaaaaatttctctacctaccctcctgaaatttaggTTTACCCAAGTTTCTGATCA-ACATGAGAACA--GA-----TA-----C------------CTCA-CTA-T---TGCGTGTGAGC----AATCCTGCCACGAATCTGCGTATC-G-GAAGAACACAAAATTAAACAATGTTTTATC--AAGCATTGTAATAGATTAGATACATGAACTTGCTT---TAATGA-CACCAGAACATTCCACCTCTTACTGTGCACACCCAAATTGGCCACCGACGGT-CGCATGT--CTTGTACTTC-TGT-AAACAT----------TGCCGCAA-A---A-----AAT------CT-A------ATC-TACA--T--------AAT-TA-CGT-----T--AC---ACA---AAATGG-----ACAATT-CC-CAGCCATGGACAA-GAGGAGTTATTGCTGT---TTCT--CGAAT---TGGTCTTTCATTAAAAATGAACGGAGCAGGACCA-ACATTTTgatat
gi|5 : A-----C------------T--A-AT--T---TGTGCAT---C----A-TATCACCA--AACTGG----GCTG-GAAGGA-CTGAAATTTA-TAATGAGTTAATC-AGAC-TCGTA-T-GTTTAGACA-ATGAGCT----TGCAT-TTTG-CACCAGG---CTTCACCCCT-GCTGTGGAA---CCAATTGTCCTT-GA-AGT-TGT-CAT--CTTG-GCATT-TGT-AAACAT----------T-C-GAAA-ATCTA-----AAT------CACGATGCCAATT-TG----TAAAAAAAAAATCTACAAA-----TGAATG--ACA--TGATTGG-----ACAAAATTA-TTGTC--AGACAA-TAGGACAGACTGCTTTCTGTTTT--C-Agtattttcatgatgtcaagaggaac
gi|6 : tcGAATGG-----ACGAAAACCCTAGGT--GGACAA-TAGGACTGAGTACTA------------ACT---CGCCCGTTCATTAAAAATTACCG--AAAGGAGCTCCCATTTTCGACATGTCTACAACTTTGCTAGTGGTCATGGGGATTTCAC-A-TCGAATAAAATTCCGTTGGCACC---AAAAATAA-----------C--------CC----TT----------ACTA--CTTA--CTACA---TACCCTCCT---CTTATATAATGT--AGG-ATC-ATGA-GAGG--GGAAACAAACAT
gi|7 : gacggCCAAAATCAGAA--TATT---TGTGTTCCAATCGTC---CTACTTAG--TCTGAGAAAG-CCTGCCT-----ACA-GAAAGTTCTTATTCCCTCATTT---TGGCCGAGCA--TAT----T-TTA----------AT---TCC--ATAATTT------GCAGTTGGGGATT-GTACTTC-TAAT-ACCGGAAGT--------GTT-GT-ATT---TTC-GA---AAATTCAAGAAATAATA-AGAAA---GTGGT-TGCTTGATCTACATAGAAA--GATG----CGCTTA---CATG----------GTTAGgattttaaacatcg
gi|8 : a-GGCCAAAATAAATT--TAAAGTTTGT-TTCCTCTCGCCATCTGA----G--TCTGAGAAAGTCTTGCCG-----ACCCAAATGTTTTTATTCAGTCATTT---TGGCAAAGTTGGTTT----T-TTTTATAATCCCGTTA--TCCGGAAAATTT------CCAGTGCTGGATCAATAATTTATAATGACTGGAAGT-TTCAA-TATT-GTCGTTGCTTTC-GATC
gi|9 : atttcatcattcaTG-GACCAAAATTAAAA--TAT----TGT-TTCCCCTTGCC---CGACCGAG--TCTTAGAAAGTCCCGCCAATTTTACCCAAATCTTTTTATTCCATCATTTTTATAGCAAA-TA--TTT----T-TTT----------TT---TCTGGAAAATTTCCGCTGCCAGATC--GATCAGTATTTCATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATTAAAAATTGTTGTTGTTTTCTCCTTCACCCGGACTGAGTCGAGAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 1 2222 11111 111 1111 444444444444444 222222 222222222 444444444444444 1 11 2222 111 4444444444 2222 1 111 55555555555555555555555555555555555555 11111111 2222 2222222222 3333333333 11111 4444444444444444444444444444444444444444444444444444444444444444 11111 1111 1 111 333333333333333333333333333333333333333333 111 4444444444 111
lowQualScore : 8 1 55 0 4 777 6666 77 44444 000 99 4444 6 666666666666666 1 0 333333 22 8 3 3 11 22 1 2 222222222 8 8 88 8 0 0 3 6 000000000000000 2 1 0 33 0000 1 777 3333333333 2222 1 0 333 8 8 99 33333333333333333333333333333333333333 88888888 5 66 4444 5 5 1 4 1 99 5 8 4 4 4 5 4 3333333333 5 888 5 888 1 77 1 8888 5 5 77 66 4 5 5 7777777777 5 5 66666 7777777777777777777777777777777777777777777777777777777777777777 4 11111 5 4 1 66 4 8888 66 4 888 1 66 6 3 8 8 6 6 0 444 666666666666666666666666666666666666666666 1 0 9999 111 4444444444 99 6 555 6 99
lowQualScore : . . .. . . ... .... .. ..... ... .. .... . ............... . . ...... .. . . . .. .. . . ......... . . .. . . . . . ............... . . . .. .... . ... .......... .... . . ... . . .. ...................................... ........ . .. .... . . . . . .. . . . . . . . .......... . ... . ... . .. . .... . . .. .. . . . .......... . . ..... ................................................................ . ..... . . . .. . .... .. . ... . .. . . . . . . . ... .......................................... . . .... ... .......... .. . ... . ..
lowQualScore : 0 0 55 9 0 888 8888 99 33333 000 22 2222 7 777777777777777 0 8 000000 44 2 8 8 88 22 0 5 888888888 0 0 88 0 8 8 2 5 888888888888888 8 0 2 88 8888 0 555 8888888888 5555 0 0 888 0 0 22 99999999999999999999999999999999999999 00000000 7 99 4444 0 0 7 4 0 88 7 9 4 4 4 0 5 6666666666 0 888 0 888 1 99 7 9999 7 7 99 44 0 7 7 0000000000 7 7 77777 5555555555555555555555555555555555555555555555555555555555555555 6 11111 1 4 0 11 0 8888 11 4 888 4 99 7 2 0 0 0 0 8 000 000000000000000000000000000000000000000000 0 8 4444 777 2222222222 22 7 333 7 22
consensus : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACC---AAAAA-GA-----------C--------AA----TT----------ACNAACCTNT--CTACC---TACCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
Reference ( family-492 ) : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACC---AAAAA-GA-----------C--------AA----TT----------ACNAACCTNT--CTACC---TACCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
gi|1 : CTG-GGCCAAAATAAATA--TATTGTTTGT-TTCCCCTCGCC---CGA----G--TCTAAGAAAGTCCTGCCA-----ACCCAAAAATTTTTG---AGTCATTT---TGGCGAAGTT--TTT----TTTTT----------TGA--TCGGGAAAATGT------CCAGAGCGAGGTCAGTATTTTATATTGACCAGAAGT-TTC-AGTATT-TT-ATTTTTTTTGGATCCAAATTCAAGAAATAATACAAAAAGAGGTGGTTTGTGAGATTGATCTGGAGA--AAAGT---CATCCA---CAGG----------ATTAG
gi|1 : cttTTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-AT--T---TGTGTGT---C----A-TCCTGCCA--AATTGA----TCTG-GAAGGA-ATGGAATTTT-CAATGTTTTATTTTACAC-TCGTA-T-GATTAGACA-ATGAGCTAGCTTGCATATTTG-CACCAGG---CTTTGCCCCT-GCTGTGGAC---TGAAATGGCCAC-GA-AGT-TGC-CAT--CTTG-GTACT-TGT-AAACGT-----------GC-AAAA-ATTCA-----AAT------CACA------ATCCTG----C--------AAGCTA-AAG-----T--AT---ACACTTTAATGG-----ACAAAAACC-AAGAC--AGACAAATAG-ACTGATTGCTGTATGTTTA--C-AATGATCAATCCTTCATTAAAAATGACCT--ACAGGACTACCCATTTCTGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-TAATTAAATTCTGCTGGCACCAAAAAAAA-AA-----------A--------AA----AA----------AAAAACCTTT--TTACC---TACCCTC---------------G-----------G-GA-GAGG--GGAAACAAACATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcaaacgaaaacagataccaatttgtgtgtcatcctgccaaattgatctggaaggaatggaattttcaatgttttattttacactcgtatgattagacaatgagctagcttgcatatttgcaccaggctttgcccctgctgtggactgaaatggccacgaagttgccatcttggtacttgtaaacgtgcaaaaattcaaatcacaatcctgcaagctaaagtatacactttaatggacaaaaaccaagacagacaaatagactgattgctgtatgtttacaatgatcaatccttcattaaaaatgacctacaggactacccatttctgacatgtctgcaactttgctaatggtcatgggaatttcatattaattaaattctgctggcaccaaaaaaaaaaaaaaaaaaaacctttttacctaccctcgggagaggggaaacaaacata
gi|10 : cttctgggccaaaataaatatattgtttgtttcccctcgcccgagtctaagaaagtcctgccaacccaaaaatttttgagtcattttggcgaagtttttttttttgatcgggaaaatgtccagagcgaggtcagtattttatattgaccagaagtttcagtattttattttttttggatccaaattcaagaaataatacaaaaagaggtggtttgtgagattgatctggagaaaagtcatccacaggattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggATTTGGCACCAGG---ATTCACCTGT-GCTGTGGAC---TGAG-------------GT-TGC-CAT--CTTG-GCATT-TGT-AAACAT---------GTGC-AAAA-ATCCA-----AAT------CCTG------ATC-AGTAAAT--------AATCAA-AAAAGTACC--AT---ACA---GAA-GG-----ACAAAATCA-TAGTC--GTACAA-TAGGACAGATTGCTAT
gi|11 : agCTAATAGTCATGGGAATTTCAT-A-TGGAAGAAAG---TGCCGG---C---AAAGT-GC-----------CCCCCCCCTAATTTTTT----------ACCTACATGTACCTACCTCATGCCCTCCT---CAGA---AATGTACAGG-GTTAG-AA-GATG--GGAAACAAACGTA
gi|12 : ATTTA-CAATGCCTTATTTCAGAC-CTGTA-T-GATTAGACA-ATGAGCT----TGCA-ATTTG-CACCAGG---CTTTGTTCCT-GCTGTGGAC---CGAATTGGTCAC--A-CGTACG---ATTACTT--GTATT---A-AAACAT---------ATAT-GCAG-ATttcttaaatat
gi|13 : agactctAATGGTCATGGGAATTTGAT-ATT-CAAT-AAATTTTGCTGGCACC---AAAA------------------------AA----TTTTTTTTACCAACCAACCTAC--CTACC---TAGCCTCCT---CCAA---AATTT--AAG-GTCGG-GA-GAGG--GGAAGCAATCATA
gi|13 : TGAAAA--TAT-GATTGC-TTCCCCTCTCC---CGAC--ttttcaaa
gi|14 : aatggtcatgggaatttgatattcaataaattttgctggcaccaaaaaattttttttaccaaccaacctacctacctagcctcctccaaaatttaagGCCAAAATTAAAA--TATAGTTTGT-TTCCCCTTGCC---CAAC--CGACTCTTAGGAAGTCCCACCG-----ACCCAAAAGTTTTTATTCCTTCATTT---CAGCAAAGTT--TTT----T-ATG----------CT---TCCGGAAaa
gi|15 : ACACAAGTT-CTAT-CA-A-ATGAAAACA--GA-----TATACCTC------------C--T-AT--T---TGTGTGT---T----A-GCTTGCCC--CATTGGACA-TCTT-G-------C---ATTTA-CAATGATTTATTTAAGAC-TTGTA-T-GTTTAGACA-ATAAGCT-tctttgattcgggggca
gi|16 : -AAA-----T--AT---A----TGAAGGGGATCAACAAAAACC-TAGTG--GGACAA-CAGGACTCATTGCTATATGTTTT--C-AAT---CGGCCCTTCATTAAAAATGACCA--GCAGAACCGCCCATTTTCAACATGCCTtg
gi|17 : cGAATGG-----GTATTAACC-TGGTC--AGACAA-AAGGACTGATTGCAAAATTTTTTTTC-AGT---AGGTT-TTAATTGCAAATGACCA--GCTGGACAACCCGTTTTCGACATGCCT
gi|18 : AAATTAAAAAATATTGTTCAT-TTCCTCTCACC---CGACTGAG--TCTGAGAAAGTCTTATTG-----ATCCAAAAGATTTTATCCCGTCATTT---TGGCAA
gi|19 : A-CAGTGGTGTATTTTAGAC-TTGTA-T-GATTAAACA-ATGA----GCTTGCAT-TTTG-CACCAGA---CTTTGCCCCT-GCTATGGGT---CAAGT
gi|2 : cctg-GGCCAAAATATAAA--TATTGTTTGT-TTCCCCTCGCC---GAACCAAG--TCTGAGAAAGTCCCAGCG-----ACCCAAAACTTTTTATTCCGTTATGT---TGGCAAAGTT--TTTATTTT-TTT----------TTAATTCTAGAA--TTT------TCAGAACAGC-TCGGAAG--AAAACTGACCAGGAGTGTTC-A-TCTTTGT-GTTGGTTTT-GATCTA--TT--AGAGG-------AAAAGAGATGGTCTGCTAGATCGGCATGAAGA--AATGTCATCTTCTGGATTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAATTT-CTAT-CA-A-ACAAAAAAAAGGA-----TA-----CATAACCACTTACC--A-GTG-TG--TGTGTAT---ATTAAA-TCTTGCCA--AATCGG----TCTG-GAAGAA-ACAGACTTTA-CAATGTTTTACTTTA-AC-TTGTA-T-GATTAAGCA-ATGAGCT----TGTGT-TTTG-CATGTGG---TTTTGCCCCT-GCTGTAGTC---CAAAT-GACCAC-AA-AGT-TGC-CAT--CTTG-GTTCT-TGT-AAACAT---------ATGC-GAAA-ATCTG-----AATGACGATCTCG------ATT-TG----T--------AATCTA-AAA---------------------A-GG-----ACTAAAACC-TAAAT--GGATAA-TAGGACTGATTGCTAT--GTTTT--C-GAT---TGGTCCTTCATTAAAAGTGACCG--ACAga
gi|20 : aagcctgtacagaaaagtctggaaaactatatattcaCA--GATCGGG---TCTTTGAAGGA-ACGGAATTTA-CAATGTCGTAATGTA-AC-TCGTA-T-GAT
gi|21 : tctctgca--CTACC---CACCCTCCTCTGC--A---AATGT--AGGCGTC-G-GA-GAGGGCGGAAACAAAC
gi|22 : acAA-TAGGACTAGTTGCTCT---TTTT--C-AAC---CAAACCTTCATTCAAAATGACCG--ACAgaatctttagat
gi|24 : A--GA-----CA-----C------------T--ATATAGT---TGTGTGT---C----A-TCTCGCCA--AATTGG----TCTG-GAAAGA-
gi|25 : CTGAGGCCAAAAGTAAAA--TATTGTTTGT-TTCCCCTCAC
gi|3 : tgCCAGAAGT-T-C-A-GTTT-GT-GTTGGTTTT-GATCTAAAATTAAGAAAT--------------------GCAAGATCAACAGGGAGAGAAATGT---CTTCTA---TAGA----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTG------TACACAAGTT-CT-TTCACA-ATAAAATCA--GATACATTA-----C------------C--G-ATA-TGTGTGTGTGT---C----A-TACCACCA--AATCGG----TCTC-GAAGAA-AAGGAATTTG-CCGTGCTTTCT----GACAT--TA-T-CATTGGACA-ATAA----GCTTGCGT-TTTG-CACCAGG---TGTCGCTCCT-GTCATGGGC---CAAA-TGACCAT-GA-AGT-CTC-CAT--CTTT-G-ATTCTGTAAAATATGGAAAAAAAATGC-GAAATATCCAAGGACAAT------CTCA------ATT-TG----T--------AATCTATGAA-----C--ATAAGACC--TGAATGG-----ACATAATCC-TAAAC--AGACAA-TAAAACTGAATGC-A-ATGTTTT--C-AAT---TGGTCCTTCATAAAAATTGACTG--GCAGGACCACCCATTTTTGACATGTCTGCAA-----CTAAT-GTCATGGGAATTTCATAA-T-GAATAAAATTCTGCTGACATG---AAAGG-GGGGGGGGGGGACC--------AAC---TC----------AAAAATTTCT--CTACC---TACCCTCCT---G--A---AATTT--AGG-GTC-A-GAGGAGG--AGAAACAAACATAa
gi|3 : TAAAAA--TAT-GTTTGT-TTCTCCTCCTC---TGAC--tttttagatat
gi|4 : ccagaagttcagtttgtgttggttttgatctaaaattaagaaatgcaagatcaacagggagagaaatgtcttctatagagttaggagtcaacacccgtcacccgtttctttattcagatttgctgcagcgatgtcaccaatttgtacacaagttctttcacaataaaatcagatacattaccgatatgtgtgtgtgtcataccaccaaatcggtctcgaagaaaaggaatttgccgtgctttctgacattatcattggacaataagcttgcgttttgcaccaggtgtcgctcctgtcatgggccaaatgaccatgaagtctccatctttgattctgtaaaatatggaaaaaaaatgcgaaatatccaaggacaatctcaatttgtaatctatgaacataagacctgaatggacataatcctaaacagacaataaaactgaatgcaatgttttcaattggtccttcataaaaattgactggcaggaccacccatttttgacatgtctgcaactaatgtcatgggaatttcataatgaataaaattctgctgacatgaaagggggggggggggaccaactcaaaaatttctctacctaccctcctgaaatttaggTTTACCCAAGTTTCTGATCA-ACATGAGAACA--GA-----TA-----C------------CTCA-CTA-T---TGCGTGTGAGC----AATCCTGCCACGAATCTGCGTATC-G-GAAGAACACAAAATTAAACAATGTTTTATC--AAGCATTGTAATAGATTAGATACATGAACTTGCTT---TAATGA-CACCAGAACATTCCACCTCTTACTGTGCACACCCAAATTGGCCACCGACGGT-CGCATGT--CTTGTACTTC-TGT-AAACAT----------TGCCGCAA-A---A-----AAT------CT-A------ATC-TACA--T--------AAT-TA-CGT-----T--AC---ACA---AAATGG-----ACAATT-CC-CAGCCATGGACAA-GAGGAGTTATTGCTGT---TTCT--CGAAT---TGGTCTTTCATTAAAAATGAACGGAGCAGGACCA-ACATTTTgatat
gi|5 : A-----C------------T--A-AT--T---TGTGCAT---C----A-TATCACCA--AACTGG----GCTG-GAAGGA-CTGAAATTTA-TAATGAGTTAATC-AGAC-TCGTA-T-GTTTAGACA-ATGAGCT----TGCAT-TTTG-CACCAGG---CTTCACCCCT-GCTGTGGAA---CCAATTGTCCTT-GA-AGT-TGT-CAT--CTTG-GCATT-TGT-AAACAT----------T-C-GAAA-ATCTA-----AAT------CACGATGCCAATT-TG----TAAAAAAAAAATCTACAAA-----TGAATG--ACA--TGATTGG-----ACAAAATTA-TTGTC--AGACAA-TAGGACAGACTGCTTTCTGTTTT--C-Agtattttcatgatgtcaagaggaac
gi|6 : tcGAATGG-----ACGAAAACCCTAGGT--GGACAA-TAGGACTGAGTACTA------------ACT---CGCCCGTTCATTAAAAATTACCG--AAAGGAGCTCCCATTTTCGACATGTCTACAACTTTGCTAGTGGTCATGGGGATTTCAC-A-TCGAATAAAATTCCGTTGGCACC---AAAAATAA-----------C--------CC----TT----------ACTA--CTTA--CTACA---TACCCTCCT---CTTATATAATGT--AGG-ATC-ATGA-GAGG--GGAAACAAACAT
gi|7 : gacggCCAAAATCAGAA--TATT---TGTGTTCCAATCGTC---CTACTTAG--TCTGAGAAAG-CCTGCCT-----ACA-GAAAGTTCTTATTCCCTCATTT---TGGCCGAGCA--TAT----T-TTA----------AT---TCC--ATAATTT------GCAGTTGGGGATT-GTACTTC-TAAT-ACCGGAAGT--------GTT-GT-ATT---TTC-GA---AAATTCAAGAAATAATA-AGAAA---GTGGT-TGCTTGATCTACATAGAAA--GATG----CGCTTA---CATG----------GTTAGgattttaaacatcg
gi|8 : a-GGCCAAAATAAATT--TAAAGTTTGT-TTCCTCTCGCCATCTGA----G--TCTGAGAAAGTCTTGCCG-----ACCCAAATGTTTTTATTCAGTCATTT---TGGCAAAGTTGGTTT----T-TTTTATAATCCCGTTA--TCCGGAAAATTT------CCAGTGCTGGATCAATAATTTATAATGACTGGAAGT-TTCAA-TATT-GTCGTTGCTTTC-GATC
gi|9 : atttcatcattcaTG-GACCAAAATTAAAA--TAT----TGT-TTCCCCTTGCC---CGACCGAG--TCTTAGAAAGTCCCGCCAATTTTACCCAAATCTTTTTATTCCATCATTTTTATAGCAAA-TA--TTT----T-TTT----------TT---TCTGGAAAATTTCCGCTGCCAGATC--GATCAGTATTTCATA
blockSeqs : A G AA A G ATC CTGA AC ATTTT TTA GG ATTT . TATAATCCCGTTA G CCGCTG AA A A G CT AA C G GTTCATC T C GG . A T TAATAAGAAAG C T GA TCAT T GAT TNNNNNNNNN . T T GAT C C AG TACATAACCACTTACCAGTGTG ATTAA A CG CGTA T C A A C TC G A T A A C G GCTTGCAT G ACA T ACC G TT G CGAC A A TA GT C C A GGAAAAAAAA C T AGGAC CACGATGCCAATTTGTAAAAAAAAAATCTACAAATGAATGACAT G GATCA T C T AT . TATG TT G . C GA C A A T G A . TGCCCCCCCCCTAATTTTTT C GTAC TCA CTTATAT AC C AG G GC
blockSeqs : . T . T . . CCAA . . . . . . TTAAT A . TT G A A AT TA A G TTCAATA . . GG . A C AAAAGAGA . A . T T . . A . AT . . . TACATTACCGATATGTG GAGC . . ACA . . G . A TA G A T . . . G GCTTGCGT . . . . G TT A AA . . . G T . . G . . . CCTGATCAGTAAATAATCAAAAAAGTACCATACA T . A . T . . AATT . . . C . . G . . C A . GGGGGGGGGGGGACCAACTC C AC . CTGCA . . GG . .
blockSeqs : . T . T . . CTTA . . . . . . CT G . TG T A A TT CA A . TCAGT . . GC . . . T . T . . G . . C . TT . . . TATACCTCCTATT T . . G . . G . G TT G . T . . . G TGCTTTA . . . . A TT A GA . . . G T . . A . . . CTCAATTTGTAATCTATGAACATAAGACCT T . A . T . . TCTG . . . C . G . . . A . AATTTTTTTTACCA A CT . CAGA . . AT . .
blockSeqs : . A . T . . CCGA . . . . . . AT G . AT . . . G C G . . . . . . . CACTATATAGT C . . . . . A . T TT G . T . . . A TGCAA . . . . A T G GA . . . T C . . A . . . GACGATCTCGATTTGTAATCTAAAA T . A . A . . ATG . . . C . . . . . . . ATAACCCTT T TA . CCAA . . G . .
blockSeqs : T . T . . CC . . . . . . TT . . TACCTCACTAT C . . . . . G . T GT A . C . . . G TGTGT . . . . A T T A . . . G C . . . . . . CTAATCTACATAATTACGTTACACA T . T . A . . TG . . . T . . GA . . A . .
blockSeqs : A . A . . . . . . C . . . . . . . C C G . T . . . . TGCAT . . . . A . . . . . . . . . . . . . T . T . C . . T . . . G .
blockSeqs : C . . . . . . . . . T . . . C . . . . . . . . C . . A . T . . T . . . . .
blockSeqs : A . . . . . A . . . . . . . . . . G . . . . .
blockSeqs : T . . . .
blockSeqCons : CCGA NT************* TACATCACCTATGT************************ GCTTGCGT** A********* *** *** GTGACCCTC********************************* CCGA****** AG*
originalCons : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGAC--AG--TCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTT----------TTA--TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GA-----TA-----C------------C--A-ATA-T---TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGTATTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACC---AAAAA-GA-----------C--------AA----TT----------ACNAACCTNT--CTACC---TACCCTCCT---C--A---AATGT--AGG-GTC-G-GA-GAGG--GGAAACAAACATA
finalCons : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCC---CGACCGAG--TCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGTT--TTT----T-TTTNT-------------TCCGGAAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GATACATCACCTATGT------------------------TGTGTGT---C----A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCTGCTTGCGT--TTTG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACATA---------TGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACC---AAAAGTGACCCTC---------------------------------ACNAACCTNT--CTACC---TACCCTCCTCCGA------AATGT--AGG-GTCAG-GA-GAGG--GGAAACAAACATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATTAAAAATTGTTGTTGTTTTCTCCTTCACCCGGACTGAGTCGAGAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 11111 111 111 2222222222 1111 222222 222222222 444444444444444 1 11 2222 111 4444444444 2222 1 111 11 3333333333333333333 2222222222 2222 4444 3333333333 11111 4444444444444444444444444444444444444444444444444444444444444444 11111 1111 1 2222222222222222222222222222222222222222 111 22222222
lowQualScore : 8 1 55 6 4 0 4 44444 000 111 6 99 1 9999999999 1 4444 333333 22 8 3 3 11 22 1 2 222222222 8 8 88 8 0 0 3 6 000000000000000 2 1 0 33 0000 1 777 3333333333 2222 1 0 333 8 8 11 5555555555555555555 2222222222 5 66 4444 5 5 1 4 1 99 5 8 4 4 4 5 6666 6 5 66 5 888 5 888 1 77 1 8888 5 5 77 66 4 5 5 7777777777 5 5 66666 7777777777777777777777777777777777777777777777777777777777777777 4 11111 5 4 1 66 4 8888 66 4 888 1 66 6 3 8 8 6 6 0 0 9999999999999999999999999999999999999999 1 0 9999 111 44444444 2 99 6 4 99
lowQualScore : . . .. . . . . ..... ... ... . .. . .......... . .... ...... .. . . . .. .. . . ......... . . .. . . . . . ............... . . . .. .... . ... .......... .... . . ... . . .. ................... .......... . .. .... . . . . . .. . . . . . . .... . . .. . ... . ... . .. . .... . . .. .. . . . .......... . . ..... ................................................................ . ..... . . . .. . .... .. . ... . .. . . . . . . . . ........................................ . . .... ... ........ . .. . . ..
lowQualScore : 0 0 55 0 0 1 4 33333 000 777 7 22 0 2222222222 0 2222 000000 44 2 8 8 88 22 0 5 888888888 0 0 88 0 8 8 2 5 888888888888888 8 0 2 88 8888 0 555 8888888888 5555 0 0 888 0 0 00 6666666666666666666 3333333333 7 99 4444 0 0 7 4 0 88 7 9 4 4 4 0 7777 3 0 99 0 888 0 888 1 99 7 9999 7 7 99 44 0 7 7 0000000000 7 7 77777 5555555555555555555555555555555555555555555555555555555555555555 6 11111 1 4 0 11 0 8888 11 4 888 4 99 7 2 0 0 0 0 8 8 6666666666666666666666666666666666666666 0 8 4444 777 77777777 5 22 7 2 22
consensus : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCCCGACC-GAGTCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGT---TTTT-T--TTTNT----------TCCGG----AAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GATACAT---CACC--TAT--GT-TGTGTGT---C------A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT----TGCGT-TT--TG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACCAAA---------AA-------TGACC--CTC----AA------ACNAACCTNT--CTACC---TACCCTCCTC-G-A---AATGT--AGG-GTCGGGAGAGG--GGAAACAAACATA
Reference ( family-492 ) : NNNCTG-GGCCAAAATNAAAA--TATTGTTTGT-TTCCCCTCGCCCGACC-GAGTCTGAGAAAGTCCCGCCG-----ACCCAAAAGTTTTTATTCCGTCATTT---TGGCAAAGT---TTTT-T--TTTNT----------TCCGG----AAAATTT------CCAGANCGGGATCAGTANTTCATANTGACCGGAAGT-TTC-A-TNTT-GT-GTTGNTTTC-GATCTAAATTCAAGAAATAATA-AAAAAGAGGTGGTCTGCNAGATCGACATGGAGA--AATGT---CNTCTA---CAGG----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTGCCGGTTTACNCAAGTT-CTATTCA-A-ACGAAAACA--GATACAT---CACC--TAT--GT-TGTGTGT---C------A-TCCCGCCA--AATCGG----TCTG-GAAGGA-ACGGAATTTA-CAATGNTTTATTTTAGAC-TCGTA-T-GATTAGACA-ATGAGCT-GCTTGCGT-TT--TG-CACCAGG---CTTCGCCCCT-GCTGTGGAC---CGAATTGGCCAC-GA-AGT-CGC-CAT--CTTG-GCATT-TGT-AAACAT---------ATGC-GAAA-ATCCA-----AAT------CNCG------ATC-TG----T--------AATCTA-AAA-----T--AT---ACA--TGAATGG-----ACAAAAACC-TAGNC--GGACAA-TAGGACTGATTGCTATATGTTTT--C-AAT---CGGTCCTTCATTAAAAATGACCG--GCAGGACCACCCATTTTCGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-GAATAAAATTCTGCTGGCACCAAA---------AG-------TGACC--CTC------------ACNAACCTNT--CTACC---TACCCTCCTCCG-A---AATGT--AGG-GTCAGGAGAGG--GGAAACAAACATA
gi|1 : CTG-GGCCAAAATAAATA--TATTGTTTGT-TTCCCCTCGCCCGA-----GTCTAAGAAAGTCCTGCCA-----ACCCAAAAATTTTTG---AGTCATTT---TGGCGAAGT---TTTT-TTTTTTGA----------TCGGG----AAAATGT------CCAGAGCGAGGTCAGTATTTTATATTGACCAGAAGT-TTC-AGTATT-TT-ATTTTTTTTGGATCCAAATTCAAGAAATAATACAAAAAGAGGTGGTTTGTGAGATTGATCTGGAGA--AAAGT---CATCCA---CAGG----------ATTAG
gi|1 : cttTTCA-A-ACGAAAACA--GATAC-----CA-----AT---T-TGTGTGT---C------A-TCCTGCCA--AATTGA----TCTG-GAAGGA-ATGGAATTTT-CAATGTTTTATTTTACAC-TCGTA-T-GATTAGACA-ATGAGCTAGCTTGCATATT--TG-CACCAGG---CTTTGCCCCT-GCTGTGGAC---TGAAATGGCCAC-GA-AGT-TGC-CAT--CTTG-GTACT-TGT-AAACGT-----------GC-AAAA-ATTCA-----AAT------CACA------ATCCTG----C--------AAGCTA-AAG-----T--AT---ACACTTTAATGG-----ACAAAAACC-AAGAC--AGACAAATAG-ACTGATTGCTGTATGTTTA--C-AATGATCAATCCTTCATTAAAAATGACCT--ACAGGACTACCCATTTCTGACATGTCTGCAACTTTGCTAATGGTCATGGGAATTTCAT-A-T-TAATTAAATTCTGCTGGCACCAAA---------AA-------AAA-------AAAAAAA-----AAAAACCTTT--TTACC---TACCC------------------------TCGGGAGAGG--GGAAACAAACATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggttcaaacgaaaacagataccaatttgtgtgtcatcctgccaaattgatctggaaggaatggaattttcaatgttttattttacactcgtatgattagacaatgagctagcttgcatatttgcaccaggctttgcccctgctgtggactgaaatggccacgaagttgccatcttggtacttgtaaacgtgcaaaaattcaaatcacaatcctgcaagctaaagtatacactttaatggacaaaaaccaagacagacaaatagactgattgctgtatgtttacaatgatcaatccttcattaaaaatgacctacaggactacccatttctgacatgtctgcaactttgctaatggtcatgggaatttcatattaattaaattctgctggcaccaaaaaaaaaaaaaaaaaaaacctttttacctaccctcgggagaggggaaacaaacata
gi|10 : cttctgggccaaaataaatatattgtttgtttcccctcgcccgagtctaagaaagtcctgccaacccaaaaatttttgagtcattttggcgaagtttttttttttgatcgggaaaatgtccagagcgaggtcagtattttatattgaccagaagtttcagtattttattttttttggatccaaattcaagaaataatacaaaaagaggtggtttgtgagattgatctggagaaaagtcatccacaggattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggT-TT--GG-CACCAGG---ATTCACCTGT-GCTGTGGAC---TGAG-------------GT-TGC-CAT--CTTG-GCATT-TGT-AAACAT---------GTGC-AAAA-ATCCA-----AAT------CCTG------ATC-AGTAAAT--------AATCAA-AAAAGTACC--AT---ACA---GAA-GG-----ACAAAATCA-TAGTC--GTACAA-TAGGACAGATTGCTAT
gi|11 : agaCTAATAGTCATGGGAATTTCAT-A-TGGAAGAAAG---TGCCGGC----AA---------AG-------TGCCC--CCCCCCTAATTTTTTACCTACATGTACCTACCTCATGCCCTCCTCAG-A---AATGTACAGG-GTTAGAAGATG--GGAAACAAACGTA
gi|12 : ATTTA-CAATGCCTTATTTCAGAC-CTGTA-T-GATTAGACA-ATGAGCT----TGCAA-TT--TG-CACCAGG---CTTTGTTCCT-GCTGTGGAC---CGAATTGGTCAC--A-CGTACG---ATTACTT--GTATT---A-AAACAT---------ATAT-GCAG-ATttcttaaatat
gi|13 : agactctAATGGTCATGGGAATTTGAT-ATT-CAAT-AAATTTTGCTGGCACCAAA---------AAATTTTTTTTACC----A------------ACCAACCTAC--CTACC---TAGCCTCCTCCA-A---AATTT--AAG-GTCGGGAGAGG--GGAAGCAATCATA
gi|13 : TGAAAA--TAT-GATTGC-TTCCCCTCTCCCGACC-ttttcaaa
gi|14 : aatggtcatgggaatttgatattcaataaattttgctggcaccaaaaaattttttttaccaaccaacctacctacctagcctcctccaaaatttaaGCCAAAATTAAAA--TATAGTTTGT-TTCCCCTTGCCCAACC-GACTCTTAGGAAGTCCCACCG-----ACCCAAAAGTTTTTATTCCTTCATTT---CAGCAAAGT---TTTT-T--ATGCT----------TCCGG----AAaa
gi|15 : ACACAAGTT-CTAT-CA-A-ATGAAAACA--GATATAC---CTCC--TAT---T-TGTGTGT---T------A-GCTTGCCC--CATTGGACA-TCTT-G-------C---ATTTA-CAATGATTTATTTAAGAC-TTGTA-T-GTTTAGACA-ATAAGCT-tctttgattcgggggca
gi|16 : -AAA-----T--AT---A----TGAAGGGGATCAACAAAAACC-TAGTG--GGACAA-CAGGACTCATTGCTATATGTTTT--C-AAT---CGGCCCTTCATTAAAAATGACCA--GCAGAACCGCCCATTTTCAACATGCCTtg
gi|17 : cGAATGG-----GTATTAACC-TGGTC--AGACAA-AAGGACTGATTGCAAAATTTTTTTTC-AGT---AGGTT-TTAATTGCAAATGACCA--GCTGGACAACCCGTTTTCGACATGCCT
gi|18 : AAATTAAAAAATATTGTTCAT-TTCCTCTCACCCGACT-GAGTCTGAGAAAGTCTTATTG-----ATCCAAAAGATTTTATCCCGTCATTT---TGGCAA
gi|19 : A-CAGTGGTGTATTTTAGAC-TTGTA-T-GATTAAACA-ATGAGCT----TGCAT-TT--TG-CACCAGA---CTTTGCCCCT-GCTATGGGT---CAAGT
gi|2 : cctg-GGCCAAAATATAAA--TATTGTTTGT-TTCCCCTCGCCGAACC-AAGTCTGAGAAAGTCCCAGCG-----ACCCAAAACTTTTTATTCCGTTATGT---TGGCAAAGT---TTTTAT--TTTTT----------TTTAATTCTAGAATTT------TCAGAACAGC-TCGGAAG--AAAACTGACCAGGAGTGTTC-A-TCTTTGT-GTTGGTTTT-GATCTA--TT--AGAGG-------AAAAGAGATGGTCTGCTAGATCGGCATGAAGA--AATGTCATCTTCTGGATTAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCGGTTTACTCAATTT-CTAT-CA-A-ACAAAAAAAAGGATACATAACCACT--TACCAGTGTGTGTGT---ATATTAAA-TCTTGCCA--AATCGG----TCTG-GAAGAA-ACAGACTTTA-CAATGTTTTACTTTA-AC-TTGTA-T-GATTAAGCA-ATGAGCT----TGTGT-TT--TG-CATGTGG---TTTTGCCCCT-GCTGTAGTC---CAAAT-GACCAC-AA-AGT-TGC-CAT--CTTG-GTTCT-TGT-AAACAT---------ATGC-GAAA-ATCTG-----AATGACGATCTCG------ATT-TG----T--------AATCTA-AAA---------------------A-GG-----ACTAAAACC-TAAAT--GGATAA-TAGGACTGATTGCTAT--GTTTT--C-GAT---TGGTCCTTCATTAAAAGTGACCG--ACAga
gi|20 : aagcctgtacagaaaagtctggaaaactatatattcaCA--GATCGGG---TCTTTGAAGGA-ACGGAATTTA-CAATGTCGTAATGTA-AC-TCGTA-T-GAT
gi|21 : tctctgca--CTACC---CACCCTCCTCTGCA---AATGT--AGGCGTC-GGAGAGGGCGGAAACAAAC
gi|22 : acAA-TAGGACTAGTTGCTCT---TTTT--C-AAC---CAAACCTTCATTCAAAATGACCG--ACAgaatctttagat
gi|24 : --TATA-GT-TGTGTGT---C------A-TCTCGCCA--AATTGG----TCTG-GAAAGA-
gi|25 : agacactaCTGAGGCCAAAAGTAAAA--TATTGTTTGT-TTCCCCTCAC
gi|3 : tgCCAGAAGT-T-C-A-GTTT-GT-GTTGGTTTT-GATCTAAAATTAAGAAAT--------------------GCAAGATCAACAGGGAGAGAAATGT---CTTCTA---TAGA----------GTTAGGAGTCAACACCCGTCACCCGTTTCTTTATTCAGATTTGCTGCAGCGATGTCACCAATTTG------TACACAAGTT-CT-TTCACA-ATAAAATCA--GATACAT---TACCGATAT--GTGTGTGTGT---C------A-TACCACCA--AATCGG----TCTC-GAAGAA-AAGGAATTTG-CCGTGCTTTCT----GACAT--TA-T-CATTGGACA-ATAA----GCTTGCGT-TT--TG-CACCAGG---TGTCGCTCCT-GTCATGGGC---CAAA-TGACCAT-GA-AGT-CTC-CAT--CTTT-G-ATTCTGTAAAATATGGAAAAAAAATGC-GAAATATCCAAGGACAAT------CTCA------ATT-TG----T--------AATCTATGAA-----C--ATAAGACC--TGAATGG-----ACATAATCC-TAAAC--AGACAA-TAAAACTGAATGC-A-ATGTTTT--C-AAT---TGGTCCTTCATAAAAATTGACTG--GCAGGACCACCCATTTTTGACATGTCTGCAA-----CTAAT-GTCATGGGAATTTCATAA-T-GAATAAAATTCTGCTGACATGAAAGGGGGGGGGGG-------GGACCAACTC------------AAAAATTTCT--CTACC---TACCCTCCT--G-A---AATTT--AGG-GTCAGAGGAGG--AGAAACAAACATAa
gi|3 : TAAAAA--TAT-GTTTGT-TTCTCCTCCTCTGACC-tttttagatat
gi|4 : ccagaagttcagtttgtgttggttttgatctaaaattaagaaatgcaagatcaacagggagagaaatgtcttctatagagttaggagtcaacacccgtcacccgtttctttattcagatttgctgcagcgatgtcaccaatttgtacacaagttctttcacaataaaatcagatacattaccgatatgtgtgtgtgtcataccaccaaatcggtctcgaagaaaaggaatttgccgtgctttctgacattatcattggacaataagcttgcgttttgcaccaggtgtcgctcctgtcatgggccaaatgaccatgaagtctccatctttgattctgtaaaatatggaaaaaaaatgcgaaatatccaaggacaatctcaatttgtaatctatgaacataagacctgaatggacataatcctaaacagacaataaaactgaatgcaatgttttcaattggtccttcataaaaattgactggcaggaccacccatttttgacatgtctgcaactaatgtcatgggaatttcataatgaataaaattctgctgacatgaaagggggggggggggaccaactcaaaaatttctctacctaccctcctgaaatttagTTTACCCAAGTTTCTGATCA-ACATGAGAACA--GATACCT---CAC-----T--AT-TGCGTGTGAGC------AATCCTGCCACGAATCTGCGTATC-G-GAAGAACACAAAATTAAACAATGTTTTATC--AAGCATTGTAATAGATTAGATACATGAACT----TGC-T-TTAATGACACCAGAACATTCCACCTCTTACTGTGCACACCCAAATTGGCCACCGACGGT-CGCATGT--CTTGTACTTC-TGT-AAACAT----------TGCCGCAA-A---A-----AAT------CT-A------ATC-TACA--T--------AAT-TA-CGT-----T--AC---ACA---AAATGG-----ACAATT-CC-CAGCCATGGACAA-GAGGAGTTATTGCTGT---TTCT--CGAAT---TGGTCTTTCATTAAAAATGAACGGAGCAGGACCA-ACATTTTgatat
gi|5 : T---CACT--AAT---T-TGTGCAT---C------A-TATCACCA--AACTGG----GCTG-GAAGGA-CTGAAATTTA-TAATGAGTTAATC-AGAC-TCGTA-T-GTTTAGACA-ATGAGCT----TGCAT-TT--TG-CACCAGG---CTTCACCCCT-GCTGTGGAA---CCAATTGTCCTT-GA-AGT-TGT-CAT--CTTG-GCATT-TGT-AAACAT----------T-C-GAAA-ATCTA-----AAT------CACGATGCCAATT-TG----TAAAAAAAAAATCTACAAA-----TGAATG--ACA--TGATTGG-----ACAAAATTA-TTGTC--AGACAA-TAGGACAGACTGCTTTCTGTTTT--C-Agtattttcatgatgtcaagaggaac
gi|6 : GAATGG-----ACGAAAACCCTAGGT--GGACAA-TAGGACTGAGTACTA------------ACT---CGCCCGTTCATTAAAAATTACCG--AAAGGAGCTCCCATTTTCGACATGTCTACAACTTTGCTAGTGGTCATGGGGATTTCAC-A-TCGAATAAAATTCCGTTGGCACCAAA---------AA-------TAACC--CTT------------ACTA--CTTA--CTACA---TACCCTCCTCTT-ATATAATGT--AGG-ATCATGAGAGG--GGAAACAAACAT
gi|7 : gacggCCAAAATCAGAA--TATT---TGTGTTCCAATCGTCCTACT-TAGTCTGAGAAAG-CCTGCCT-----ACA-GAAAGTTCTTATTCCCTCATTT---TGGCCGAGC---ATAT-T--TTAAT----------TCC------ATAATTT------GCAGTTGGGGATT-GTACTTC-TAAT-ACCGGAAGT--------GTT-GT-ATT---TTC-GA---AAATTCAAGAAATAATA-AGAAA---GTGGT-TGCTTGATCTACATAGAAA--GATG----CGCTTA---CATG----------GTTAGgattttaaacatcg
gi|8 : a-GGCCAAAATAAATT--TAAAGTTTGT-TTCCTCTCGCC--ATCTGAGTCTGAGAAAGTCTTGCCG-----ACCCAAATGTTTTTATTCAGTCATTT---TGGCAAAGTTGGTTTT-T--TTTATAATCCCGTTATCCGG----AAAATTT------CCAGTGCTGGATCAATAATTTATAATGACTGGAAGT-TTCAA-TATT-GTCGTTGCTTTC-GATC
gi|9 : atttcatcattcaTG-GACCAAAATTAAAA--TATTGT-----TTCCCCTTGCCCGACC-GAGTCTTAGAAAGTCCCGCCAATTTTACCCAAATCTTTTTATTCCATCATTTTTATAGCAAA-T---ATTT-T--TTTTT----------TCTGG----AAAATTTCCGCTGCCAGATC--GATCAGTATTTCATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATTAAAAATTGTTGTTGTTTTCTCCTTCACCCGGACTGAGTCGAGAAA