lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111
lowQualScore : 1 111 111 11 22 1 1 444444 11111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1 1 1 11 2222 11 1 11111 111 11 1 111 1 111 66666666666666666666666666666666 1 11 111 2222 1 00000 11 22222 11111 1111111111 1111111 11111
lowQualScore : 3 3 888 3 333 22 55 44 4 5 666666 1 7 66666 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 7 3 3 88 7777 11 0 6 66666 000 2 5 44 6 0 2 666 8 8 5 000 0 33333333333333333333333333333333 0 6 6 7 33 88 99 6 8 6 999 8 66 111 4444 88 3 6 6 6 99 6 5 6 00000 1 6 77 5 6 11 00000 99 4 4 3 3 3 3 99999 2222222222 6 0 3333333 3 44444 7 3 44 3 3 3 3 44 555
lowQualScore : . . ... . ... .. .. .. . . ...... . . ..... . ....................................................................................................................... . . . . . .. .... .. . . ..... ... . . .. . . . ... . . . ... . ................................ . . . . .. .. .. . . . ... . .. ... .... .. . . . . .. . . . ..... . . .. . . .. ..... .. . . . . . . ..... .......... . . ....... . ..... . . .. . . . . .. ...
lowQualScore : 3 0 555 2 000 88 00 55 5 0 000000 0 3 00000 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 3 3 3 3 33 0000 00 6 7 22222 000 1 7 66 0 1 9 000 7 6 7 000 7 55555555555555555555555555555555 6 7 7 3 77 88 22 7 0 6 888 2 44 888 2222 88 2 7 7 7 22 7 2 7 00000 0 7 99 7 0 99 99999 55 0 0 6 6 6 6 66666 8888888888 6 5 6666666 6 11111 4 1 22 1 1 1 6 22 888
consensus : GTTGCGCT-AAAAGTATTNCA-C-GATTAGAACGTCCCCTATATATTTCATACAAATCGNAATTTTTCCCAAAC---AG-ATGCAAGATTTTATTT-ATA-ATTNTCTGGA----AT-------------TGT----AAANACC-AA---------TTG--TCAACTG-T-----------TTCCT--AGATATA-AAA-CTAAGTTGCTCCG-C----TTA-TCAGGG-ATCATTGC-TCCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-T-NCGGATCC---AAAANTTTTCTACCC-CTTCAATGAACTTCGCAAATTTTG--AAGCGACGG-GTGG---GACTTTGGTTTCGACCTTTT-A--CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGGT-GGC-AAAAAAGGACT-CAAGGTAGCAGTCAC--TT-CTATGCTATTGT-GTTTTGAACTTAAAAAT-TCGGGTTTTTGAAATGG--AATT-T-TCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGCAAA-GTTCATCAAA--TA-AATTTGTC--ATCAGGAAAA---N-GCGTCAAAAGTA--T-AT-GAAA-A-AT-AA-GAT---T-ATTC-----C----TACNTGCT---AA--GAACG-ATG-----TTTTTTNAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGGATA---CCCGGTGTG
Reference ( gi|2 ) : GTTGTGCT-AAAAGTATTTCA-T-GATTAGAACGCGTCCTATATATTTCATATTAATCGCGATTCTTCCCAAAC---A--ATGTAAGATTTTATTT-ATA-ATTCTCTGGA----GT-------------TGT-ATTAAAAACCCAA---------TTG--TCAGCTG-T-----------TTCCT-TAGATATA-AA--CTAAGTTGCTCCG-TG---TTA-TCAGG--ATCATTGC-TCCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-T-CTGGATCC---AAAATTTTTCTACCC-CTCTAATAAACTTCGCAAAATTTT--AAGTGACTG-GTGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGAT-GGC-AAAAAAGGACT-AAAGGTAGCAGCCAC--TT-CTATGCTATTGT-GTTTTGAACTTAATAAT-TTGGATTTTTGAAATGG--AATT-TCTCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGATTTAGATTAAAGC-TT-----TTGCAAA-GTTCATCAAA--TA-AATTTATC--ATCAGGAAAA---T-GTGTCAAAAGTA--T-AT-GAAA-A-AT-AA-GAT---A-ATTC-----C----TACATGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-TGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|1 : GTTTCGCT-AAAAGTATTGCA-TTGATTAAA---CGTCCC---TATTTCATAT-AATCGGAATTTTTCC-AAAC---AG-ATGTAAGATTTTATTT-A-A-ATTCTTTGGA----AT-------------TGT-TTTAAACACCACA---------TTG--TCAGCTGAT-----------TTCC---AGATATA-AAA-CTAAGTTGCTTCA-CGCAGTTAATCAGGGTATCATTGC-TCCGGTGTTTTTAGGAATGCATTTTCGAGAAA-TCATTGCTTTCCG-G-GTTAT-CTGGATCC---AAAGATTGTCTACCC-CTTCAATGAACTTCG--AAATTTT--GAA-GACGG-GTGG---GACTTTGGTTC---------------------------A---GGGA------ATTATCAAT-TATCATT--GT-G-C-AAAAAAGGACT-AAAGGTAGCA-CCACATCT-CTATGCTATTGT-GTTTTGAA-TTAATAATATCGGGTTTT--GAATGG--AATTGTCGCA--TC-TTGTTGGCTCACTG-TCGTTAATCTTTTCATCAAGATCTTAATGGGCGATTGTTTTTAATTAAAGCATTAAACATTG-AAA-GTTCATCAAA--TATAATTTGTC--ATCAGGAAAA---TTGTGTCGAA-GTA--T-AT-GAAA----TCAA-GAT---T-ATTT-----C----TACATGCT---AA--GAACG-ATG-----TTTTT--GATTTG-GCTCC--GCGG-GC-T-TGGCATCCCTCCG-TGGACGTTGG--ATCC-GATA---CCCGGT
gi|3 : taaaagtgggacgggaatccccccccccgctcctacggcttacggccatatttttcatgctagttcattaactctcgcgttattccatttgaggactcttcaaaagacgtcagcGTTGTGCTGAAAAGTCTTTTACT-TATTAGAACGTCCCCTAGATATTTCATACAAAGTGCAATT-TTCCCAAACACGA--ATGCAAGA-TTTATTCAATACATTGTCTGGAAAAGATCAACAATGAAAAATGTAAAAAAAAACACAAAAAAACATTTTGTGTCAACTG-A-----------TTCTTCCAGATATATAACTCTAAGTTGCTCCGCCT---TTA-TCAGGA-ATCATTGCTTCCG-TG--TT-GTGGAT-CATTT--GAAAAAGC--TTGCT--CCGTGTGTT-TACGGAATCCAAAAAAAATTTTCTACAC-CTTCAATGAACTTCAC-AAATTTTGGACGCGACGGCGTGG---GAACTCGATTTCGACCTTTTAAACCAATATC--A-ATTA----GGA------TATt
gi|13 : tttatgcagcttcgttaactaaagaggtaaatcattaggaaccggctgcgaaggacgtacagtGCTGTGTT-GAAAGTATTTCA-C-GATTAGAACGTCCCCTTTATATTTCATACAAATCGCAATTTTTCCCA
gi|8 : ttcatgtagttcgttaagagtatcccaggaactcggtgcaaagacgtacattAGTATTGTG-C-GATAAGAACGTCCCCTATATATTTCATACAAATCGAGATTTTTCC-AAAC---AGAATGCAAAATTTTATTT-ATA-ATTTTCTGGA--------------------------AAAGATC-AA---------T-G--AAAACTG-TAAAACCCCACATTCCT--AAATATA-AAA-CTAA-----------------------------ATTGC-TCCG-TGTTTT-ATGGAT-CATTT--GAAAAT-C--TTGCT--CCGTG-GTT-A-GCGGATCC---AAAAATTTTCTGCCC-CTTCAATGAACTTCGCAAA
gi|10 : cgtacT--CCGTG-GTT-T-ACGGATCC---AAAATTTTTCTACCC-CTTCAATGAACTTCGCAAATTTTG--AAGCGACGC-GTGGGACGACTTTGGTTTCGACCTGTTAA--CAA-AT---A-ATTA---GGGATACATGTATATCACTCTATCATTTGGT-GGTAAAAAAAGGACT-CAAAGTAGCAGTCAC--TT-t
gi|20 : aagcccgtggattcaaattcaaa--CCG-G-GTA-T-CCGGATCC---AAAATTTTTCTACCC-CTTCAATGA
gi|17 : ca-GTT-T-ACGGATCC---AAAATTTTTCTACCCTCTC-GATGAACTTCGCAAATTTTG--AAGCGACGG-GTGG---GACTTTGGTTCCGACC
gi|6 : GGGTCC---AAAATTTTCCTACCC-CTTCAATGAACTTCGCAAATTTTG--AAGCGACGG-GTGG---GACTTTGGTTTCGACCTTTT---------------------------------A-ATCAATCTATCATTTGGT-GGC-AAAAA-GGATT-CAAGGTAGCAGTCAC--TT-CTATGCTATTGT-GTTTTGAACTTAAAAAT-TCGGGTTT--------G---------TCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTCAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGCAAA-GTTCCTAAAA--T----TTTGTC--ATCAGGAAAA---A-GTGTCAAAAGTA--T-AT-GAAA-A-AT-AA-GAT---A-ATTC-----C----TACCTGCT---AA--GAACG-ATG-----TTTTTT-AATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGTG
gi|5 : AACTTCGCAAATTTTG--AAGCGACGG-GCGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---TGGA------TATATCAATCTATCATTTGAT-AGC-AAAAAAGAACTCAAATGTAGCACTAAC--TT-CTATGCTATTGT-GTTTTGAACTTAAAAAT-TCGGGTTTTTGAAATTA--AATT-----AA------GTTTGCT-ACTT-TTGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGCAAA-TTTCATCAAA--TA-AACTTGTC--ATCAGGATAA---A-GCGTCAAAAGTA--T-AT-GAAA-A-AT-AA-GAT---A-ATTC-----T----TACCTGCT---TG--GAACG-ATGTTGTTTTTTTTTAATTTG-GCTCC--GCGT-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGTt
gi|4 : TCGCAAA--TTG--AAGTGAC-G-CT-------CTCTC-TCTC-ACCTTTCCA--CAA-ATTTAATATTATGTGGGAG-----TATACCAATCTATCATT-GATTGGC-AAAAA-GGACT-CAAGTTAGCAGCCAC--TTTCTATGCTGTTGTTGTTTTGAACTTAATAAT-CGGGTTTTTTGAAATGGGAAATT-TGTCAGTTCATTGTTTGCT-ACTGCTCGTTAAATTTT-CATCAA--TTTTAATGA-CGATTGGTTTAGATTAAAGC-TTAAACATTGCAAAAGTTCATCAAAATTA-AATTTGTTCTATCAGGAAAA---T-GTGTCGGAAGTA--TTAT-GAAA-A--T-AA-GAT---T-AT-C-----C----TACATGCT---AA--GAACG-ATG-----TTTTTTGAA-TTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCGTTGGACGTTGG--ATCCGGATA---CCC
gi|7 : T-GGC-AAAAAAGGACT-CAAGGTAGCACGAAC--TT-CTATGCTAATGT-GTTTTGAACTTAAAAAT-TCGGGTTTTTGAAATGA--AATT-TATCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TATTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGCAAA-GTTCATCAAA--TA-AATATGTC--ATCAGGAAAA---A-GCGTCAAAAGTA--T-AT-GAAA-A-AT-AA-GATCCCATATTC-----C----TACCTGCT---TG--GAACG-ATT-----TTTTTTTAATTTG-GCTTC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGT
gi|9 : TCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CCATTGTTTTAGATTAAAGC-TTAAACATTGTAAA-GTTCATCAAA--TA-AATTTGTC--ATCAGGAAAA---A-GCGTCAAAAGTA--T-AT-GAAA-A-AT-AA-GAT---T-ATTT-----C----TACTTGCTTGGAACGGAACG-ATG-----TATTTTGAATTTG-GCTCT--GCAG-GC-T-TTGGATCC
gi|12 : CAAA--TA-AATTTGTCG-AGCAGGGAAAAAGC-ATGT-AAAGATAAGT-AT-GAAATATAT-AA-GAT---T-ATTTGATCTC----TCCTT--T---TG--GAACGGATA-----TATTATGAATTTG-G-TCCGGGCGG-GCGT-TTGggatacccgg
gi|14 : ATTTGTC--ATCAGGAAAA---C-GTGTCAGAAGTA--A-AT-GAAA-A-AT-AA-GAT---T-ATTC-----C----TACATACT---AA--CAACG-ATGTT---TTTTTTTAATTTG-GCTTT--GCGG-GC-T-TTGGATTCCTCCG-TGGACGTTGG--tgtc
gi|16 : -GTGTCATAAGTA--T-AT-GAAA-A-AT-AA-GAT------TTT---------------------------------------TTTTTTTAATTTG-GCTCC--GCGG-GC-T-TTTGATCCCTCCG-TGGACGTTGG--ATCCGCATT---CCC
gi|11 : TGTTAAAATTAA-T-ATAGAGA-A-AT-TATGAA---A-GTTT-----CCTTTTCCAATTT---AA--AAA-A-ATG-----TT----AAACTT-----CC--GCGGTGC-CCTTGGATCCCTCCG-AGGACGTTGGTAATCCGGATGAACCCCGGTGTGtg
gi|15 : aaaA-A-AT-AA-GAT---T-ATTC-----C----TACCTGCT---TT--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGT-GC-T-TTGGATCCCTCAG-CGGACGTTTA--ATCCGCATA---TCCGGTGTt
gi|18 : AATTTG-AATCC--ACGG-GC-T-TTGTATCCCTCCG-TGGACATTGG--ATCCGGGCA---CCCGGTGT
gi|19 : TTGTGCTCC--GCGA-TC-A-TTGGATCCCTCCG-TGGACATTGG--ATCCGGATA---CCCGGTGTG
gi|21 : GGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|20 : TTGG--ATCCGGATA---CCCGGTGaaaatgt
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 3333 1111 333333333333333333333333333333333333333333333333333333333 555555555555 11 1 11 55555555555555555 1 1 111 1 11 1111 555555555555555555555555555555555 22 1111111 11111
lowQualScore : 2 0 1 111 11 0 1 0 0000 3 4444 1 555555555555555555555555555555555555555555555555555555555 111111111111 33 0 3 33 2 0 22222222222222222 0 0 000 0 33 7777 99 7 5 5 1 5 9999 5 0 5 888 000000000000000000000000000000000 3 5 5 5 55 77 5 6 4 6 99 99 77 3 1 5 5 5 77 5 5 5 66 5 66 4 4 55 4 99 3 3 3 7777 99999 2 3333333 3 44444 5 3 33 2 2 2 55 33 555
lowQualScore : . . . ... .. . . . .... . .... . ......................................................... ............ .. . . .. . . ................. . . ... . .. .... .. . . . . . .... . . . ... ................................. . . . . .. .. . . . . .. .. .. . . . . . .. . . . .. . .. . . .. . .. . . . .... ..... . ....... . ..... . . .. . . . .. .. ...
lowQualScore : 0 0 0 000 66 8 0 8 2222 2 2222 0 888888888888888888888888888888888888888888888888888888888 555555555555 88 0 2 88 5 2 00000000000000000 0 0 222 0 88 8888 22 3 7 7 0 0 8888 0 2 0 888 444444444444444444444444444444444 2 7 0 7 11 99 7 7 0 7 88 22 22 5 4 7 7 7 99 7 7 7 99 0 11 4 4 00 0 55 6 6 6 7777 11111 3 6666666 6 11111 8 1 99 9 9 9 55 99 444
consensus : GTTGTGCT-AAAAGTATTTCAC-G-ATTAGAACGTCCCCTATATATTTCATACAAATCGCGATTTTTCCCAAACA--G-ATGCAAGATTTTATTTA-TA-ATTCTCTGG-----------AAT------TGT---A---AAAA----C-C-A-A----------T-TGTCAGCTGN-----------TTC--CC-AGATATAAAACT--AAGTTGCTCCGCGC--TTA-TCAGGG-ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TNCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTTCA---CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGGTGGC-AAAAAAGGACTCAAG-GTAGCAGCCAC--TT-CTATGCTATTGT-GTTTTGAACTTAANAAT-TCGGGTTTTT-GAAATGG--AATTT-TCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAN-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTC-----CTACNTGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGGATA---CCCGGTGTG
Reference ( family-489 ) : GTTGCGCT-AAAAGTATTNCAC-G-ATTAGAACGTCCCCTATATATTTCATACAAATCGNAATTTTTCCCAAACA--G-ATGCAAGATTTTATTTA-TA-ATTNTCTGG-----------AAT------TGT---A---AANA----C-C-A-A----------T-TGTCAACTGT-----------TTC--CT-AGATATAAAACT--AAGTTGCTCCGC----TTA-TCAGGG-ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TNCGGA-TCCAAAAN---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTT-A---CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGGTGGC-AAAAAAGGACTCAAG-GTAGCAGTCAC--TT-CTATGCTATTGT-GTTTTGAACTTAAAAAT-TCGGGTTTTT-GAAATGG--AATTT-TCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAN-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTC-----CTACNTGCT---AA--GAACG-ATG-----TTTTTTNAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|1 : GTTTCGCT-AAAAGTATTGCATTG-ATTA-AACGTCCC-----TATTTCATATAA-TCGGAATTTTTCC-AAACA--G-ATGTAAGATTTTATTTA--A-ATTCTTTGG-----------AAT------TGTTTTA---AACA----C-C-ACA----------T-TGTCAGCTGA-----------TTT--CC-AGATATAAAACT--AAGTTGCTTCACGCAGTTAATCAGGGTATCATTGCT-CCGGTGTTTTTAGGAATGCATTTTCGAGAAA-TCATTGCTTTCCG-G-GTTATCTGGA-TCCAAAGA---TTGTCTACCCCTTCAATGAACTTCG-AAATTTTGAA-G--ACGG-GTGG---GACTTTGGTTC----------------------------A---GGGA------ATTATCAAT-TATCATT--GTG-C-AAAAAAGGACTAAAG-GTAGCA-CCACATCT-CTATGCTATTGT-GTTTTGAA-TTAATAATATCGGGTTTT---GAATGG--AATTG-TCGCATC-TTGTTGGCTCACTG-TCGTTAATCTTTTCATCAAGATCTTAATGGGCGATTGTTTTTAATTAAAGCATTAAACATTG--AAAGTTCATCAAA--TATAATTTGT--C-ATCAGG-AAAATTGTGT-CGAA-GTA--TATGAAA----TCAAGAT----TATTT-----CTACATGCT---AA--GAACG-ATG-----TTTTT--GATTTG-GCTCC--GCGG-GC-T-TGGCATCCCTCCG-TGGACGTTGG--ATCC-GATA---CCCGGT
gi|10 : taaaagtgggacgggaatccccccccccgctcctacggcttacggccatatttttcatgctagttcattaactctcgcgttattccatttgaggactcttcaaaagacgtcagcT--CCGTG-GTT-TACGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGC-GTGGGACGACTTTGGTTTCGACCTGTTAA---CAA-AT---A-ATTA---GGGATACATGTATATCACTCTATCATTTGGTGGTAAAAAAAGGACTCAAA-GTAGCAGTCAC--TT-t
gi|11 : aagcccgtggattcaaattcaaaTCC--GCGGTGC-CCTTGGATCCCTCCG-AGGACGTTGGTAATCCGGATGAACCCCGGTGTG
gi|12 : aaatgttaaaattaatatagagaaattatgaaagtttccttttccaatttaaaaaaatgttaaactCAAA--TA-AATTTGT--CGAGCAGGGAAAAA-GCATGTAAAGATAAGTATGAAATATAT-AAGAT----TATTTGATCTCTCCTT--T---TG--GAACGGATA-----TATTATGAATTTG-G-TCCGGGCGG-GCGT-TTGt
gi|13 : GCTGTGTT-GAAAGTATTTCAC-G-ATTAGAACGTCCCCTTTATATTTCATACAAATCGCAATTTTTCCCAtgtc
gi|14 : ttcatgtagttcgttaagagtatcccaggaactcggtgcaaagacgtacattATTTGT--C-ATCAGG-AAAAC-GTGT-CAGAAGTA--AATGAAA-A-AT-AAGAT----TATTC-----CTACATACT---AA--CAACG-ATGTT---TTTTTTTAATTTG-GCTTT--GCGG-GC-T-TTGGATTCCTCCG-TGGACGTTGG--
gi|15 : A-A-AT-AAGAT----TATTC-----CTACCTGCT---TT--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGT-GC-T-TTGGATCCCTCAG-CGGACGTTTA--ATCCGCATA---TCCGGTGT
gi|16 : -GTGT-CATAAGTA--TATGAAA-A-AT-AAGAT----T-TT------------------------------------TTTTTTTAATTTG-GCTCC--GCGG-GC-T-TTTGATCCCTCCG-TGGACGTTGG--ATCCGCATT---CCC
gi|17 : -GTT-TACGGA-TCCAAAAT---TTTTCTACCCTCTCGATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTCCGACCtg
gi|18 : AATTTG-AATCC--ACGG-GC-T-TTGTATCCCTCCG-TGGACATTGG--ATCCGGGCA---CCCGGTGT
gi|19 : TTGTGCTCC--GCGA-TC-A-TTGGATCCCTCCG-TGGACATTGG--ATCCGGATA---CCCGGTGTG
gi|2 : GTTGTGCT-AAAAGTATTTCAT-G-ATTAGAACGCGTCCTATATATTTCATATTAATCGCGATTCTTCCCAAACA----ATGTAAGATTTTATTTA-TA-ATTCTCTGG-----------AGT------TGT---ATTAAAAA----C-CCA-A----------T-TGTCAGCTGT-----------TTC--CTTAGATATAAA-CT--AAGTTGCTCCGTG---TTA-TCAGG--ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TCTGGA-TCCAAAAT---TTTTCTACCCCTCTAATAAACTTCGCAAAATTTTAA-GTGACTG-GTGG---GACTTTGGTTTCGACCTTTTCA---CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGATGGC-AAAAAAGGACTAAAG-GTAGCAGCCAC--TT-CTATGCTATTGT-GTTTTGAACTTAATAAT-TTGGATTTTT-GAAATGG--AATTTCTCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGATTTAGATTAAAGC-TT-----TTGC-AAAGTTCATCAAA--TA-AATTTAT--C-ATCAGG-AAAAT-GTGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----AATTC-----CTACATGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-TGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|20 : --CCG-G-GTA-TCCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGA
gi|21 : caGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|3 : GTTGTGCTGAAAAGTCTTTTAC-TTATTAGAACGTCCCCTAGATATTTCATACAAAGTGCAATTTT-CCCAAACACGA-ATGCAAGATTT-ATTCAATACATTGTCTGGAAAAGATCAACAATGAAAAATGT---A---AAAAAAAACAC-A-AAAAAACATTTTGTGTCAACTGA-----------TTCTTCC-AGATATATAACTCTAAGTTGCTCCGCCT--TTA-TCAGGA-ATCATTGCTTCCG-TGTT---GTGGAT-CATTT--GAAAAAGC--TTGCT--CCGTGTGTT-TACGGAATCCAAAAAAAATTTTCTACACCTTCAATGAACTTCACAAATTTTGGACGCGACGGCGTGG---GAACTCGATTTCGACCTTTT-AAACCAATATC--A-ATTA----GGA------TATaaaatgt
gi|4 : tttatgcagcttcgttaactaaagaggtaaatcattaggaaccggctgcgaaggacgtacagtTCGCAAATT--GAA-GTGACG-----------CTCTCTCTCTCACCTTTCCA---CAA-ATTTAATATTATGTGGGAG-----TATACCAATCTATCATTGATTGGC-AAAAA-GGACTCAAG-TTAGCAGCCAC--TTTCTATGCTGTTGTTGTTTTGAACTTAATAAT--CGGGTTTTTTGAAATGGGAAATTTGTCAGTTCATTGTTTGCT-ACTGCTCGTTAAATTTT-CATCAA--TTTTAATGA-CGATTGGTTTAGATTAAAGC-TTAAACATTGCAAAAGTTCATCAAAATTA-AATTTGTTCT-ATCAGG-AAAAT-GTGT-CGGAAGTAT-TATG-AA-A-AT-AAGAT----TA-TC-----CTACATGCT---AA--GAACG-ATG-----TTTTTTGAA-TTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCGTTGGACGTTGG--ATCCGGATA---CCC
gi|5 : AACTTCGCAAATTTTGAA-GCGACGG-GCGG---GACTTTGGTTTCGACCTTTTCA---CAA-AT---A-ATTA---TGGA------TATATCAATCTATCATTTGATAGC-AAAAAAGAACTCAAATGTAGCACTAAC--TT-CTATGCTATTGT-GTTTTGAACTTAAAAAT-TCGGGTTTTT-GAAATTA--AATT----AA------GTTTGCT-ACTT-TTGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAATTTCATCAAA--TA-AACTTGT--C-ATCAGG-ATAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----AATTC-----TTACCTGCT---TG--GAACG-ATGTTGTTTTTTTTTAATTTG-GCTCC--GCGT-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGT
gi|6 : GGG-TCCAAAAT---TTTCCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTT-A----------------------------------ATCAATCTATCATTTGGTGGC-AAAAA-GGATTCAAG-GTAGCAGTCAC--TT-CTATGCTATTGT-GTTTTGAACTTAAAAAT-TCGGGTTT---------G--------TCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTCAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCCTAAAA--T----TTTGT--C-ATCAGG-AAAAA-GTGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----AATTC-----CTACCTGCT---AA--GAACG-ATG-----TTTTTT-AATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGTG
gi|7 : TGGC-AAAAAAGGACTCAAG-GTAGCACGAAC--TT-CTATGCTAATGT-GTTTTGAACTTAAAAAT-TCGGGTTTTT-GAAATGA--AATTTATCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TATTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATATGT--C-ATCAGG-AAAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGATCCCATATTC-----CTACCTGCT---TG--GAACG-ATT-----TTTTTTTAATTTG-GCTTC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGTt
gi|8 : AGTATTGTGC-G-ATAAGAACGTCCCCTATATATTTCATACAAATCGAGATTTTT-CCAAACA--GAATGCAAAATTTTATTTA-TA-ATTTTCTGG-----------A--------------A---AAGA----T-C-A-A------------TGAAAACTGTAAAACCCCACATTC--CT-AAATATAAAACT--AA----------------------------ATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAT-C--TTGCT--CCGTG-GTT-AGCGGA-TCCAAAAA---TTTTCTGCCCCTTCAATGAACTTCGCAAAT
gi|9 : cgtacTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CCATTGTTTTAGATTAAAGC-TTAAACATTGT-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTT-----CTACTTGCTTGGAACGGAACG-ATG-----TATTTTGAATTTG-GCTCT--GCAG-GC-T-TTGG----------------------ATCCGGATA---CCCGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 3333 1111 333333333333333333333333333333333333333333333333333333333 444444444444 11 1 11 33333333333333333 1 1 111 1 11 1111 33333333333333333333333333333333 22 1111111 11111
lowQualScore : 0 0 111 11 0 0 0000 3 4444 0 555555555555555555555555555555555555555555555555555555555 888888888888 33 0 3 33 2 0 66666666666666666 0 0 000 0 33 7777 99 7 5 5 1 5 9999 5 0 5 888 33333333333333333333333333333333 3 5 5 5 44 77 5 6 1 6 99 99 77 3 1 5 5 5 77 5 5 5 66 5 66 4 4 55 4 99 3 3 3 7777 99999 2 3333333 3 44444 4 2 33 2 2 2 55 33 555
lowQualScore : . . ... .. . . .... . .... . ......................................................... ............ .. . . .. . . ................. . . ... . .. .... .. . . . . . .... . . . ... ................................ . . . . .. .. . . . . .. .. .. . . . . . .. . . . .. . .. . . .. . .. . . . .... ..... . ....... . ..... . . .. . . . .. .. ...
lowQualScore : 0 6 000 66 8 8 2222 2 2222 2 555555555555555555555555555555555555555555555555555555555 555555555555 88 0 2 88 5 2 00000000000000000 0 0 222 0 88 8888 22 3 7 7 0 0 5555 0 2 0 888 11111111111111111111111111111111 2 7 0 7 77 99 7 7 0 7 88 22 22 5 4 7 7 7 99 7 7 7 99 0 11 4 4 00 0 55 6 6 6 7777 11111 3 6666666 6 11111 6 9 77 7 7 7 55 99 444
consensus : GTTGTGCT-AAAAGTATTTCAC-G-ATTAGAACGTCCCCTATATATTTCATACAAATCGCGATTTTTCCCAAACA--G-ATGCAAGATTTTATTTA-TA-ATTCTCTGG-----------AAT------TGT---A---AAAA----C-C-A-A----------T-TGTCAGCTG-----------ATTC--CC-AGATATAAAACT--AAGTTGCTCCGCGC--TTA-TCAGGG-ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TNCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGGTGGC-AAAAAAGGACTCAAG-GTAGCAGCCAC--TT-CTATGCTATTGT-GTTTTGAACTTAANAAT-TCGGGTTTTT-GAAATGG--AATTT-TCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAN-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTC-----CTACNTGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGGATA---CCCGGTGTG
Reference ( family-489 ) : GTTGTGCT-AAAAGTATTTCAC-G-ATTAGAACGTCCCCTATATATTTCATACAAATCGCGATTTTTCCCAAACA--G-ATGCAAGATTTTATTTA-TA-ATTCTCTGG-----------AAT------TGT---A---AAAA----C-C-A-A----------T-TGTCAGCTG-----------NTTC--CC-AGATATAAAACT--AAGTTGCTCCGCGC--TTA-TCAGGG-ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TNCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGGTGGC-AAAAAAGGACTCAAG-GTAGCAGCCAC--TT-CTATGCTATTGT-GTTTTGAACTTAANAAT-TCGGGTTTTT-GAAATGG--AATTT-TCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAN-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTC-----CTACNTGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|1 : GTTTCGCT-AAAAGTATTGCATTG-ATTA-AACGTCCC-----TATTTCATATAA-TCGGAATTTTTCC-AAACA--G-ATGTAAGATTTTATTTA--A-ATTCTTTGG-----------AAT------TGTTTTA---AACA----C-C-ACA----------T-TGTCAGCTG-----------ATTT--CC-AGATATAAAACT--AAGTTGCTTCACGCAGTTAATCAGGGTATCATTGCT-CCGGTGTTTTTAGGAATGCATTTTCGAGAAA-TCATTGCTTTCCG-G-GTTATCTGGA-TCCAAAGA---TTGTCTACCCCTTCAATGAACTTCG-AAATTTTGAA-G--ACGG-GTGG---GACTTTGGTTC---------------------------A---GGGA------ATTATCAAT-TATCATT--GTG-C-AAAAAAGGACTAAAG-GTAGCA-CCACATCT-CTATGCTATTGT-GTTTTGAA-TTAATAATATCGGGTTTT---GAATGG--AATTG-TCGCATC-TTGTTGGCTCACTG-TCGTTAATCTTTTCATCAAGATCTTAATGGGCGATTGTTTTTAATTAAAGCATTAAACATTG--AAAGTTCATCAAA--TATAATTTGT--C-ATCAGG-AAAATTGTGT-CGAA-GTA--TATGAAA----TCAAGAT----TATTT-----CTACATGCT---AA--GAACG-ATG-----TTTTT--GATTTG-GCTCC--GCGG-GC-T-TGGCATCCCTCCG-TGGACGTTGG--ATCC-GATA---CCCGGT
gi|10 : taaaagtgggacgggaatccccccccccgctcctacggcttacggccatatttttcatgctagttcattaactctcgcgttattccatttgaggactcttcaaaagacgtcagcTTTGAATTTG-AATCC--ACGG-GC-T-Tt
gi|10 : T--CCGTG-GTT-TACGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGC-GTGGGACGACTTTGGTTTCGACCTGTTAA--CAA-AT---A-ATTA---GGGATACATGTATATCACTCTATCATTTGGTGGTAAAAAAAGGACTCAAA-GTAGCAGTCAC--TT-tccgtggtttacggatccaaaatttttctaccccttcaatgaacttcgcaaattttgaagcgacgcgtgggacgactttggtttcgacctgttaacaaataattagggatacatgtatatcactctatcatttggtggtaaaaaaaggactcaaagtagcagtcactt
gi|11 : aagcccgtggattcaaattcaaaTCC--GCGGTGC-CCTTGGATCCCTCCG-AGGACGTTGGTAATCCGGATGAACCCCGGTGTG
gi|12 : aaatgttaaaattaatatagagaaattatgaaagtttccttttccaatttaaaaaaatgttaaactCAAA--TA-AATTTGT--CGAGCAGGGAAAAA-GCATGTAAAGATAAGTATGAAATATAT-AAGAT----TATTTGATCTCTCCTT--T---TG--GAACGGATA-----TATTATGAATTTG-G-TCCGGGCGG-GCGT-TTGt
gi|13 : GCTGTGTT-GAAAGTATTTCAC-G-ATTAGAACGTCCCCTTTATATTTCATACAAATCGCAATTTTTCCCAtgtc
gi|14 : ttcatgtagttcgttaagagtatcccaggaactcggtgcaaagacgtacattATTTGT--C-ATCAGG-AAAAC-GTGT-CAGAAGTA--AATGAAA-A-AT-AAGAT----TATTC-----CTACATACT---AA--CAACG-ATGTT---TTTTTTTAATTTG-GCTTT--GCGG-GC-T-TTGGATTCCTCCG-TGGACGTTGG--
gi|15 : A-A-AT-AAGAT----TATTC-----CTACCTGCT---TT--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGT-GC-T-TTGGATCCCTCAG-CGGACGTTTA--ATCCGCATA---TCCGGTGT
gi|16 : -GTGT-CATAAGTA--TATGAAA-A-AT-AAGAT----T-TT------------------------------------TTTTTTTAATTTG-GCTCC--GCGG-GC-T-TTTGATCCCTCCG-TGGACGTTGG--ATCCGCATT---CCC
gi|17 : -GTT-TACGGA-TCCAAAAT---TTTTCTACCCTCTCGATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTCCGACCtg
gi|18 : AATTTG-AATCC--ACGG-GC-T-TTGTATCCCTCCG-TGGACATTGG--ATCCGGGCA---CCCGGTGT
gi|19 : TTGTGCTCC--GCGA-TC-A-TTGGATCCCTCCG-TGGACATTGG--ATCCGGATA---CCCGGTGTG
gi|2 : GTTGTGCT-AAAAGTATTTCAT-G-ATTAGAACGCGTCCTATATATTTCATATTAATCGCGATTCTTCCCAAACA----ATGTAAGATTTTATTTA-TA-ATTCTCTGG-----------AGT------TGT---ATTAAAAA----C-CCA-A----------T-TGTCAGCTG-----------TTTC--CTTAGATATAAA-CT--AAGTTGCTCCGTG---TTA-TCAGG--ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TCTGGA-TCCAAAAT---TTTTCTACCCCTCTAATAAACTTCGCAAAATTTTAA-GTGACTG-GTGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGATGGC-AAAAAAGGACTAAAG-GTAGCAGCCAC--TT-CTATGCTATTGT-GTTTTGAACTTAATAAT-TTGGATTTTT-GAAATGG--AATTTCTCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGATTTAGATTAAAGC-TT-----TTGC-AAAGTTCATCAAA--TA-AATTTAT--C-ATCAGG-AAAAT-GTGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----AATTC-----CTACATGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-TGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|20 : --CCG-G-GTA-TCCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGA
gi|21 : caGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|3 : GTTGTGCTGAAAAGTCTTTTAC-TTATTAGAACGTCCCCTAGATATTTCATACAAAGTGCAATTTT-CCCAAACACGA-ATGCAAGATTT-ATTCAATACATTGTCTGGAAAAGATCAACAATGAAAAATGT---A---AAAAAAAACAC-A-AAAAAACATTTTGTGTCAACTG-----------ATTCTTCC-AGATATATAACTCTAAGTTGCTCCGCCT--TTA-TCAGGA-ATCATTGCTTCCG-TGTT---GTGGAT-CATTT--GAAAAAGC--TTGCT--CCGTGTGTT-TACGGAATCCAAAAAAAATTTTCTACACCTTCAATGAACTTCACAAATTTTGGACGCGACGGCGTGG---GAACTCGATTTCGACCTTTTAAACCAATATC--A-ATTA----GGA------TATaaaatgt
gi|4 : tttatgcagcttcgttaactaaagaggtaaatcattaggaaccggctgcgaaggacgtacagtTCGCAAATT--GAA-GTGACG-----------CTCTCTCTCTCACCTTTCCA--CAA-ATTTAATATTATGTGGGAG-----TATACCAATCTATCATTGATTGGC-AAAAA-GGACTCAAG-TTAGCAGCCAC--TTTCTATGCTGTTGTTGTTTTGAACTTAATAAT--CGGGTTTTTTGAAATGGGAAATTTGTCAGTTCATTGTTTGCT-ACTGCTCGTTAAATTTT-CATCAA--TTTTAATGA-CGATTGGTTTAGATTAAAGC-TTAAACATTGCAAAAGTTCATCAAAATTA-AATTTGTTCT-ATCAGG-AAAAT-GTGT-CGGAAGTAT-TATG-AA-A-AT-AAGAT----TA-TC-----CTACATGCT---AA--GAACG-ATG-----TTTTTTGAA-TTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCGTTGGACGTTGG--ATCCGGATA---CCC
gi|5 : AACTTCGCAAATTTTGAA-GCGACGG-GCGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---TGGA------TATATCAATCTATCATTTGATAGC-AAAAAAGAACTCAAATGTAGCACTAAC--TT-CTATGCTATTGT-GTTTTGAACTTAAAAAT-TCGGGTTTTT-GAAATTA--AATT----AA------GTTTGCT-ACTT-TTGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAATTTCATCAAA--TA-AACTTGT--C-ATCAGG-ATAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----AATTC-----TTACCTGCT---TG--GAACG-ATGTTGTTTTTTTTTAATTTG-GCTCC--GCGT-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGT
gi|6 : GGG-TCCAAAAT---TTTCCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTT---------------------------------A-ATCAATCTATCATTTGGTGGC-AAAAA-GGATTCAAG-GTAGCAGTCAC--TT-CTATGCTATTGT-GTTTTGAACTTAAAAAT-TCGGGTTT---------G--------TCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTCAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCCTAAAA--T----TTTGT--C-ATCAGG-AAAAA-GTGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----AATTC-----CTACCTGCT---AA--GAACG-ATG-----TTTTTT-AATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGTG
gi|7 : TGGC-AAAAAAGGACTCAAG-GTAGCACGAAC--TT-CTATGCTAATGT-GTTTTGAACTTAAAAAT-TCGGGTTTTT-GAAATGA--AATTTATCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TATTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATATGT--C-ATCAGG-AAAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGATCCCATATTC-----CTACCTGCT---TG--GAACG-ATT-----TTTTTTTAATTTG-GCTTC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGTt
gi|8 : AGTATTGTGC-G-ATAAGAACGTCCCCTATATATTTCATACAAATCGAGATTTTT-CCAAACA--GAATGCAAAATTTTATTTA-TA-ATTTTCTGG-----------A--------------A---AAGA----T-C-A-A------------TGAAAACTGTAAAACCCCACATTC--CT-AAATATAAAACT--AA----------------------------ATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAT-C--TTGCT--CCGTG-GTT-AGCGGA-TCCAAAAA---TTTTCTGCCCCTTCAATGAACTTCGCAAAT
gi|9 : cgtacTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CCATTGTTTTAGATTAAAGC-TTAAACATTGT-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTT-----CTACTTGCTTGGAACGGAACG-ATG-----TATTTTGAATTTG-GCTCT--GCAG-GC-T-TTGG----------------------ATCCGGATA---CCCGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 3333 1111 333333333333333333333333333333333333333333333333333333333 44444444444 11 1 11 33333333333333333 1 1 111 1 11 1111 33333333333333333333333333333333 22 1111111 11111
lowQualScore : 0 0 111 11 0 0 0000 3 4444 0 555555555555555555555555555555555555555555555555555555555 77777777777 33 0 3 33 2 0 66666666666666666 0 0 000 0 33 7777 99 7 5 5 1 5 9999 5 0 5 888 33333333333333333333333333333333 3 5 5 5 44 77 5 6 1 6 99 99 77 3 1 5 5 5 77 5 5 5 66 5 66 4 4 55 4 99 3 3 3 7777 99999 2 3333333 3 44444 4 2 33 2 2 2 55 33 555
lowQualScore : . . ... .. . . .... . .... . ......................................................... ........... .. . . .. . . ................. . . ... . .. .... .. . . . . . .... . . . ... ................................ . . . . .. .. . . . . .. .. .. . . . . . .. . . . .. . .. . . .. . .. . . . .... ..... . ....... . ..... . . .. . . . .. .. ...
lowQualScore : 0 6 000 66 8 8 2222 2 2222 2 555555555555555555555555555555555555555555555555555555555 55555555555 88 0 2 88 5 2 00000000000000000 0 0 222 0 88 8888 22 3 7 7 0 0 5555 0 2 0 888 11111111111111111111111111111111 2 7 0 7 77 99 7 7 0 7 88 22 22 5 4 7 7 7 99 7 7 7 99 0 11 4 4 00 0 55 6 6 6 7777 11111 3 6666666 6 11111 6 9 77 7 7 7 55 99 444
consensus : GTTGTGCT-AAAAGTATTTCAC-G-ATTAGAACGTCCCCTATATATTTCATACAAATCGCGATTTTTCCCAAACA--G-ATGCAAGATTTTATTTA-TA-ATTCTCTGG-----------AAT------TGT---A---AAAA----C-C-A-A----------T-TGTCAGCTG-----------ATTC--CC-AGATATAAAACT--AAGTTGCTCCGCGC--TTA-TCAGGG-ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TNCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGGTGGC-AAAAAAGGACTCAAG-GTAGCAGCCAC--TT-CTATGCTATTGT-GTTTTGAACTTAANAAT-TCGGGTTTTT-GAAATGG--AATTT-TCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAN-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTC-----CTACNTGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGGATA---CCCGGTGTG
Reference ( family-489 ) : GTTGTGCT-AAAAGTATTTCAC-G-ATTAGAACGTCCCCTATATATTTCATACAAATCGCGATTTTTCCCAAACA--G-ATGCAAGATTTTATTTA-TA-ATTCTCTGG-----------AAT------TGT---A---AAAA----C-C-A-A----------T-TGTCAGCTG-----------ATTC--CC-AGATATAAAACT--AAGTTGCTCCGCGC--TTA-TCAGGG-ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TNCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGGTGGC-AAAAAAGGACTCAAG-GTAGCAGCCAC--TT-CTATGCTATTGT-GTTTTGAACTTAANAAT-TCGGGTTTTT-GAAATGG--AATTT-TCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAN-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTC-----CTACNTGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|1 : GTTTCGCT-AAAAGTATTGCATTG-ATTA-AACGTCCC-----TATTTCATATAA-TCGGAATTTTTCC-AAACA--G-ATGTAAGATTTTATTTA--A-ATTCTTTGG-----------AAT------TGTTTTA---AACA----C-C-ACA----------T-TGTCAGCTG-----------ATTT--CC-AGATATAAAACT--AAGTTGCTTCACGCAGTTAATCAGGGTATCATTGCT-CCGGTGTTTTTAGGAATGCATTTTCGAGAAA-TCATTGCTTTCCG-G-GTTATCTGGA-TCCAAAGA---TTGTCTACCCCTTCAATGAACTTCG-AAATTTTGAA-G--ACGG-GTGG---GACTTTGGTTC---------------------------A---GGGA------ATTATCAAT-TATCATT--GTG-C-AAAAAAGGACTAAAG-GTAGCA-CCACATCT-CTATGCTATTGT-GTTTTGAA-TTAATAATATCGGGTTTT---GAATGG--AATTG-TCGCATC-TTGTTGGCTCACTG-TCGTTAATCTTTTCATCAAGATCTTAATGGGCGATTGTTTTTAATTAAAGCATTAAACATTG--AAAGTTCATCAAA--TATAATTTGT--C-ATCAGG-AAAATTGTGT-CGAA-GTA--TATGAAA----TCAAGAT----TATTT-----CTACATGCT---AA--GAACG-ATG-----TTTTT--GATTTG-GCTCC--GCGG-GC-T-TGGCATCCCTCCG-TGGACGTTGG--ATCC-GATA---CCCGGT
gi|10 : taaaagtgggacgggaatccccccccccgctcctacggcttacggccatatttttcatgctagttcattaactctcgcgttattccatttgaggactcttcaaaagacgtcagcTTTGAATTTG-AATCC--ACGG-GC-T-Tt
gi|10 : T--CCGTG-GTT-TACGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGC-GTGGGACGACTTTGGTTTCGACCTGTTAA--CAA-AT---A-ATTA---GGGATACATGTATATCACTCTATCATTTGGTGGTAAAAAAAGGACTCAAA-GTAGCAGTCAC--TT-tccgtggtttacggatccaaaatttttctaccccttcaatgaacttcgcaaattttgaagcgacgcgtgggacgactttggtttcgacctgttaacaaataattagggatacatgtatatcactctatcatttggtggtaaaaaaaggactcaaagtagcagtcactt
gi|11 : aagcccgtggattcaaattcaaaTCC--GCGGTGC-CCTTGGATCCCTCCG-AGGACGTTGGTAATCCGGATGAACCCCGGTGTG
gi|12 : aaatgttaaaattaatatagagaaattatgaaagtttccttttccaatttaaaaaaatgttaaactCAAA--TA-AATTTGT--CGAGCAGGGAAAAA-GCATGTAAAGATAAGTATGAAATATAT-AAGAT----TATTTGATCTCTCCTT--T---TG--GAACGGATA-----TATTATGAATTTG-G-TCCGGGCGG-GCGT-TTGt
gi|13 : GCTGTGTT-GAAAGTATTTCAC-G-ATTAGAACGTCCCCTTTATATTTCATACAAATCGCAATTTTTCCCAtgtc
gi|14 : ttcatgtagttcgttaagagtatcccaggaactcggtgcaaagacgtacattATTTGT--C-ATCAGG-AAAAC-GTGT-CAGAAGTA--AATGAAA-A-AT-AAGAT----TATTC-----CTACATACT---AA--CAACG-ATGTT---TTTTTTTAATTTG-GCTTT--GCGG-GC-T-TTGGATTCCTCCG-TGGACGTTGG--
gi|15 : A-A-AT-AAGAT----TATTC-----CTACCTGCT---TT--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGT-GC-T-TTGGATCCCTCAG-CGGACGTTTA--ATCCGCATA---TCCGGTGT
gi|16 : -GTGT-CATAAGTA--TATGAAA-A-AT-AAGAT----T-TT------------------------------------TTTTTTTAATTTG-GCTCC--GCGG-GC-T-TTTGATCCCTCCG-TGGACGTTGG--ATCCGCATT---CCC
gi|17 : -GTT-TACGGA-TCCAAAAT---TTTTCTACCCTCTCGATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTCCGACCtg
gi|18 : AATTTG-AATCC--ACGG-GC-T-TTGTATCCCTCCG-TGGACATTGG--ATCCGGGCA---CCCGGTGT
gi|19 : TTGTGCTCC--GCGA-TC-A-TTGGATCCCTCCG-TGGACATTGG--ATCCGGATA---CCCGGTGTG
gi|2 : GTTGTGCT-AAAAGTATTTCAT-G-ATTAGAACGCGTCCTATATATTTCATATTAATCGCGATTCTTCCCAAACA----ATGTAAGATTTTATTTA-TA-ATTCTCTGG-----------AGT------TGT---ATTAAAAA----C-CCA-A----------T-TGTCAGCTG-----------TTTC--CTTAGATATAAA-CT--AAGTTGCTCCGTG---TTA-TCAGG--ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TCTGGA-TCCAAAAT---TTTTCTACCCCTCTAATAAACTTCGCAAAATTTTAA-GTGACTG-GTGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGATGGC-AAAAAAGGACTAAAG-GTAGCAGCCAC--TT-CTATGCTATTGT-GTTTTGAACTTAATAAT-TTGGATTTTT-GAAATGG--AATTTCTCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGATTTAGATTAAAGC-TT-----TTGC-AAAGTTCATCAAA--TA-AATTTAT--C-ATCAGG-AAAAT-GTGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----AATTC-----CTACATGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-TGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|20 : --CCG-G-GTA-TCCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGA
gi|21 : caGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|3 : GTTGTGCTGAAAAGTCTTTTAC-TTATTAGAACGTCCCCTAGATATTTCATACAAAGTGCAATTTT-CCCAAACACGA-ATGCAAGATTT-ATTCAATACATTGTCTGGAAAAGATCAACAATGAAAAATGT---A---AAAAAAAACAC-A-AAAAAACATTTTGTGTCAACTG-----------ATTCTTCC-AGATATATAACTCTAAGTTGCTCCGCCT--TTA-TCAGGA-ATCATTGCTTCCG-TGTT---GTGGAT-CATTT--GAAAAAGC--TTGCT--CCGTGTGTT-TACGGAATCCAAAAAAAATTTTCTACACCTTCAATGAACTTCACAAATTTTGGACGCGACGGCGTGG---GAACTCGATTTCGACCTTTTAAACCAATATC--A-ATTA----GGA------TATaaaatgt
gi|4 : tttatgcagcttcgttaactaaagaggtaaatcattaggaaccggctgcgaaggacgtacagtTCGCAAATT--GAA-GTGACG-----------CTCTCTCTCTCACCTTTCCA--CAA-ATTTAATATTATGTGGGAG-----TATACCAATCTATCATTGATTGGC-AAAAA-GGACTCAAG-TTAGCAGCCAC--TTTCTATGCTGTTGTTGTTTTGAACTTAATAAT--CGGGTTTTTTGAAATGGGAAATTTGTCAGTTCATTGTTTGCT-ACTGCTCGTTAAATTTT-CATCAA--TTTTAATGA-CGATTGGTTTAGATTAAAGC-TTAAACATTGCAAAAGTTCATCAAAATTA-AATTTGTTCT-ATCAGG-AAAAT-GTGT-CGGAAGTAT-TATG-AA-A-AT-AAGAT----TA-TC-----CTACATGCT---AA--GAACG-ATG-----TTTTTTGAA-TTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCGTTGGACGTTGG--ATCCGGATA---CCC
gi|5 : AACTTCGCAAATTTTGAA-GCGACGG-GCGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---TGGA------TATATCAATCTATCATTTGATAGC-AAAAAAGAACTCAAATGTAGCACTAAC--TT-CTATGCTATTGT-GTTTTGAACTTAAAAAT-TCGGGTTTTT-GAAATTA--AATT----AA------GTTTGCT-ACTT-TTGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAATTTCATCAAA--TA-AACTTGT--C-ATCAGG-ATAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----AATTC-----TTACCTGCT---TG--GAACG-ATGTTGTTTTTTTTTAATTTG-GCTCC--GCGT-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGT
gi|6 : GGG-TCCAAAAT---TTTCCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTT---------------------------------A-ATCAATCTATCATTTGGTGGC-AAAAA-GGATTCAAG-GTAGCAGTCAC--TT-CTATGCTATTGT-GTTTTGAACTTAAAAAT-TCGGGTTT---------G--------TCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTCAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCCTAAAA--T----TTTGT--C-ATCAGG-AAAAA-GTGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----AATTC-----CTACCTGCT---AA--GAACG-ATG-----TTTTTT-AATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGTG
gi|7 : TGGC-AAAAAAGGACTCAAG-GTAGCACGAAC--TT-CTATGCTAATGT-GTTTTGAACTTAAAAAT-TCGGGTTTTT-GAAATGA--AATTTATCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TATTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATATGT--C-ATCAGG-AAAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGATCCCATATTC-----CTACCTGCT---TG--GAACG-ATT-----TTTTTTTAATTTG-GCTTC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGTt
gi|8 : AGTATTGTGC-G-ATAAGAACGTCCCCTATATATTTCATACAAATCGAGATTTTT-CCAAACA--GAATGCAAAATTTTATTTA-TA-ATTTTCTGG-----------A--------------A---AAGA----T-C-A-A------------TGAAAACTGTAAAACCCCACATTC--CT-AAATATAAAACT--AA----------------------------ATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAT-C--TTGCT--CCGTG-GTT-AGCGGA-TCCAAAAA---TTTTCTGCCCCTTCAATGAACTTCGCAAAT
gi|9 : cgtacTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CCATTGTTTTAGATTAAAGC-TTAAACATTGT-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTT-----CTACTTGCTTGGAACGGAACG-ATG-----TATTTTGAATTTG-GCTCT--GCAG-GC-T-TTGG----------------------ATCCGGATA---CCCGG
blockSeqs : G TT TT CGA T ATAC AAAAGATCAACAATGAAAAATGTAAAAAAAAACACAAAAAAACATTTTG TAAAACCCCAC TT T A CT G GCCTTTATCAGGA T . TT . . GC . T T . A A AAAA C C GAC CACAAATTTAATATTATGTGGGAG T A A T GT . T T T . TT GA TC T A . C . . . . A AT . TC G G A G AG T T . CCCA GATCT T TGGAACG G TTGTT G T GG T G C TT TA AAC
blockSeqs : . G AT GA T TA AGTTGTATTAAAAACCCAAT . . . A . G GTGTTATCAGG . . TT . . C . T . . A . T . . . AACAAATAATTAGGGATACATG T . A . GC . . . T . T . TG T A . . . . . . . . . . . . C . T . . . . . A TG . TT G . . . . . A . .
blockSeqs : . G AG . . TA AAAAGATCAA . . . . . . . . . . . . C . T . . C . T . . . AAACCAATATCAATTAGGA G . A . GC . . . A . T . TA T A . . . . . . . . . . . . T . . . . . . . C AA . . T . . . . . T . .
blockSeqs : G AT . T . . C . T . . . CACAAATAATTAGGGA T . A . CT . . . A . T . . T A . . . . . . . . . . . . T . . . . . . . A TT . . G . . . . . C . .
blockSeqs : . . . . A . T . . . CACAAATAATTATGGA T . . . GT . . . A . . . . . A . . . . . . . . . . . . A . . . . . . . A AA . . T . . . . . T . .
blockSeqs : . . G . T . . . . . . . CG . . . . . . . . . . . . . . . A . . . . . . . C AA . . G . . . . . T . .
blockSeqs : . A . . . . . . . . A . . . . . . . C TG . . G . . . . . T . .
blockSeqs : . . . A . . . . . . . C AA . . T . . . . . T . .
blockSeqs : . . . . . . . T TG . . T . . . . . C . .
blockSeqs : . . . . . . . . . G . . . . . C . .
blockSeqs : . . . . . . C . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqCons : G** AT ** NACAAATAATTAGGGA**************** GT ** T* TN ** A*
originalCons : GTTGTGCT-AAAAGTATTTCAC-G-ATTAGAACGTCCCCTATATATTTCATACAAATCGCGATTTTTCCCAAACA--G-ATGCAAGATTTTATTTA-TA-ATTCTCTGG-----------AAT------TGT---A---AAAA----C-C-A-A----------T-TGTCAGCTG-----------ATTC--CC-AGATATAAAACT--AAGTTGCTCCGCGC--TTA-TCAGGG-ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TNCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGGTGGC-AAAAAAGGACTCAAG-GTAGCAGCCAC--TT-CTATGCTATTGT-GTTTTGAACTTAANAAT-TCGGGTTTTT-GAAATGG--AATTT-TCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAN-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTC-----CTACNTGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGGATA---CCCGGTGTG
finalCons : GTTGTGCT-AAAAGTATTTCACG--ATTAGAACGTCCCCTATATATTTCATACAAATCGCGATTTTTCCCAAACA--G-ATGCAAGATTTTATTTA-TA-ATTCTCTGG-----------AAT------TGT---A---AAAA----C-C-A-A----------T-TGTCAGCTG-----------ATTC--CC-AGATATAAAACT--AAGTTGCTCCGCGC--TTA-TCAGGG-ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TNCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTTNACAAATAATTAGGGA----------------TATATCAATCTATCATTTGGTGGC-AAAAAAGGACTCAAG-GTAGCAGTCAC--TT-CTATGCTATTGT-GTTTTGAACTTAANAAT-TCGGGTTTTT-GAAATGG--AATTTNTCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTC-----CTACNTGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGGATA---CCCGGTGTG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 3333 1111 333333333333333333333333333333333333333333333333333333333 44444444444 11 1 11 33333333333333333 1 1 111 1 11 1111 333333333333333333333333333333 111 1111111 11111
lowQualScore : 0 0 111 11 0 0 0000 3 4444 0 555555555555555555555555555555555555555555555555555555555 77777777777 33 0 3 33 2 0 66666666666666666 0 0 000 0 33 7777 99 7 5 5 1 5 9999 5 0 5 888 3 111111111111111111111111111111 3 5 5 5 55 77 5 6 1 6 99 99 333 44 1 5 5 5 77 5 5 5 66 5 66 4 4 66 4 99 3 3 3 7777 99999 2 3333333 3 44444 4 2 33 2 2 2 55 33 555
lowQualScore : . . ... .. . . .... . .... . ......................................................... ........... .. . . .. . . ................. . . ... . .. .... .. . . . . . .... . . . ... . .............................. . . . . .. .. . . . . .. .. ... .. . . . . .. . . . .. . .. . . .. . .. . . . .... ..... . ....... . ..... . . .. . . . .. .. ...
lowQualScore : 0 6 000 66 8 8 2222 2 2222 2 555555555555555555555555555555555555555555555555555555555 55555555555 88 0 2 88 5 2 00000000000000000 0 0 222 0 88 8888 22 3 7 7 0 0 5555 0 2 0 888 0 000000000000000000000000000000 2 7 0 7 11 99 7 7 0 7 88 22 222 22 4 7 7 7 99 7 7 7 99 0 11 4 4 33 0 55 6 6 6 7777 11111 3 6666666 6 11111 6 9 77 7 7 7 55 99 444
consensus : GTTGTGCT-AAAAGTATTTCAC-G-ATTAGAACGTCCCCTATATATTTCATACAAATCGCGATTTTTCCCAAACA--G-ATGCAAGATTTTATTTA-TA-ATTCTCTGG-----------AAT------TGT---A---AAAA----C-C-A-A----------T-TGTCAGCTG-----------ATTC--CC-AGATATAAAACT--AAGTTGCTCCGCGC--TTA-TCAGGG-ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TNCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTTNA--CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGGTGGC-AAAAAAGGACTCAAG-GTAGCAGCCAC--TT-CTATGCTATTGT-GTTTTGAACTTAANAAT-TCGGGTTTTT-GAAATGG--AATT-TNTCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAN-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTC-----CTACNTGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGGATA---CCCGGTGTG
Reference ( family-489 ) : GTTGTGCT-AAAAGTATTTCAC-G-ATTAGAACGTCCCCTATATATTTCATACAAATCGCGATTTTTCCCAAACA--G-ATGCAAGATTTTATTTA-TA-ATTCTCTGG-----------AAT------TGT---A---AAAA----C-C-A-A----------T-TGTCAGCTG-----------ATTC--CC-AGATATAAAACT--AAGTTGCTCCGCGC--TTA-TCAGGG-ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TNCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTTNA--CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGGTGGC-AAAAAAGGACTCAAG-GTAGCAGTCAC--TT-CTATGCTATTGT-GTTTTGAACTTAANAAT-TCGGGTTTTT-GAAATGG--AATT-TNTCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTC-----CTACNTGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|1 : GTTTCGCT-AAAAGTATTGCATTG-ATTA-AACGTCCC-----TATTTCATATAA-TCGGAATTTTTCC-AAACA--G-ATGTAAGATTTTATTTA--A-ATTCTTTGG-----------AAT------TGTTTTA---AACA----C-C-ACA----------T-TGTCAGCTG-----------ATTT--CC-AGATATAAAACT--AAGTTGCTTCACGCAGTTAATCAGGGTATCATTGCT-CCGGTGTTTTTAGGAATGCATTTTCGAGAAA-TCATTGCTTTCCG-G-GTTATCTGGA-TCCAAAGA---TTGTCTACCCCTTCAATGAACTTCG-AAATTTTGAA-G--ACGG-GTGG---GACTTTGGTTC---------------------------A---GGGA------ATTATCAAT-TATCATT--GTG-C-AAAAAAGGACTAAAG-GTAGCA-CCACATCT-CTATGCTATTGT-GTTTTGAA-TTAATAATATCGGGTTTT---GAATGG--AATTGTCGCA--TC-TTGTTGGCTCACTG-TCGTTAATCTTTTCATCAAGATCTTAATGGGCGATTGTTTTTAATTAAAGCATTAAACATTG--AAAGTTCATCAAA--TATAATTTGT--C-ATCAGG-AAAATTGTGT-CGAA-GTA--TATGAAA----TCAAGAT----TATTT-----CTACATGCT---AA--GAACG-ATG-----TTTTT--GATTTG-GCTCC--GCGG-GC-T-TGGCATCCCTCCG-TGGACGTTGG--ATCC-GATA---CCCGGT
gi|10 : taaaagtgggacgggaatccccccccccgctcctacggcttacggccatatttttcatgctagttcattaactctcgcgttattccatttgaggactcttcaaaagacgtcagcTTTGAATTTG-AATCC--ACGG-GC-T-Tt
gi|10 : T--CCGTG-GTT-TACGGA-TCCAAAAT---TTTTCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGC-GTGGGACGACTTTGGTTTCGACCTGTTAA--CAA-AT---A-ATTA---GGGATACATGTATATCACTCTATCATTTGGTGGTAAAAAAAGGACTCAAA-GTAGCAGTCAC--TT-tccgtggtttacggatccaaaatttttctaccccttcaatgaacttcgcaaattttgaagcgacgcgtgggacgactttggtttcgacctgttaacaaataattagggatacatgtatatcactctatcatttggtggtaaaaaaaggactcaaagtagcagtcactt
gi|11 : aagcccgtggattcaaattcaaaTCC--GCGGTGC-CCTTGGATCCCTCCG-AGGACGTTGGTAATCCGGATGAACCCCGGTGTG
gi|12 : aaatgttaaaattaatatagagaaattatgaaagtttccttttccaatttaaaaaaatgttaaactCAAA--TA-AATTTGT--CGAGCAGGGAAAAA-GCATGTAAAGATAAGTATGAAATATAT-AAGAT----TATTTGATCTCTCCTT--T---TG--GAACGGATA-----TATTATGAATTTG-G-TCCGGGCGG-GCGT-TTGt
gi|13 : GCTGTGTT-GAAAGTATTTCAC-G-ATTAGAACGTCCCCTTTATATTTCATACAAATCGCAATTTTTCCCAtgtc
gi|14 : ttcatgtagttcgttaagagtatcccaggaactcggtgcaaagacgtacattATTTGT--C-ATCAGG-AAAAC-GTGT-CAGAAGTA--AATGAAA-A-AT-AAGAT----TATTC-----CTACATACT---AA--CAACG-ATGTT---TTTTTTTAATTTG-GCTTT--GCGG-GC-T-TTGGATTCCTCCG-TGGACGTTGG--
gi|15 : A-A-AT-AAGAT----TATTC-----CTACCTGCT---TT--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGT-GC-T-TTGGATCCCTCAG-CGGACGTTTA--ATCCGCATA---TCCGGTGT
gi|16 : -GTGT-CATAAGTA--TATGAAA-A-AT-AAGAT----T-TT------------------------------------TTTTTTTAATTTG-GCTCC--GCGG-GC-T-TTTGATCCCTCCG-TGGACGTTGG--ATCCGCATT---CCC
gi|17 : -GTT-TACGGA-TCCAAAAT---TTTTCTACCCTCTCGATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTCCGACCtg
gi|18 : AATTTG-AATCC--ACGG-GC-T-TTGTATCCCTCCG-TGGACATTGG--ATCCGGGCA---CCCGGTGT
gi|19 : TTGTGCTCC--GCGA-TC-A-TTGGATCCCTCCG-TGGACATTGG--ATCCGGATA---CCCGGTGTG
gi|2 : GTTGTGCT-AAAAGTATTTCAT-G-ATTAGAACGCGTCCTATATATTTCATATTAATCGCGATTCTTCCCAAACA----ATGTAAGATTTTATTTA-TA-ATTCTCTGG-----------AGT------TGT---ATTAAAAA----C-CCA-A----------T-TGTCAGCTG-----------TTTC--CTTAGATATAAA-CT--AAGTTGCTCCGTG---TTA-TCAGG--ATCATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAA-C--TTGCT--CCGTG-GTT-TCTGGA-TCCAAAAT---TTTTCTACCCCTCTAATAAACTTCGCAAAATTTTAA-GTGACTG-GTGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---GGGA------TATATCAATCTATCATTTGATGGC-AAAAAAGGACTAAAG-GTAGCAGCCAC--TT-CTATGCTATTGT-GTTTTGAACTTAATAAT-TTGGATTTTT-GAAATGG--AATT-TCTCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGATTTAGATTAAAGC-TT-----TTGC-AAAGTTCATCAAA--TA-AATTTAT--C-ATCAGG-AAAAT-GTGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----AATTC-----CTACATGCT---AA--GAACG-ATG-----TTTTTTGAATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-TGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|20 : --CCG-G-GTA-TCCGGA-TCCAAAAT---TTTTCTACCCCTTCAATGA
gi|21 : caGGACGTTGG--ATCCGGATA---CCCGGTGTG
gi|3 : GTTGTGCTGAAAAGTCTTTTAC-TTATTAGAACGTCCCCTAGATATTTCATACAAAGTGCAATTTT-CCCAAACACGA-ATGCAAGATTT-ATTCAATACATTGTCTGGAAAAGATCAACAATGAAAAATGT---A---AAAAAAAACAC-A-AAAAAACATTTTGTGTCAACTG-----------ATTCTTCC-AGATATATAACTCTAAGTTGCTCCGCCT--TTA-TCAGGA-ATCATTGCTTCCG-TGTT---GTGGAT-CATTT--GAAAAAGC--TTGCT--CCGTGTGTT-TACGGAATCCAAAAAAAATTTTCTACACCTTCAATGAACTTCACAAATTTTGGACGCGACGGCGTGG---GAACTCGATTTCGACCTTTTAAACCAATATC--A-ATTA----GGA------TATaaaatgt
gi|4 : tttatgcagcttcgttaactaaagaggtaaatcattaggaaccggctgcgaaggacgtacagtTCGCAAATT--GAA-GTGACG-----------CTCTCTCTCTCACCTTTCCA--CAA-ATTTAATATTATGTGGGAG-----TATACCAATCTATCATTGATTGGC-AAAAA-GGACTCAAG-TTAGCAGCCAC--TTTCTATGCTGTTGTTGTTTTGAACTTAATAAT--CGGGTTTTTTGAAATGGGAAATT-TGTCAGTTCATTGTTTGCT-ACTGCTCGTTAAATTTT-CATCAA--TTTTAATGA-CGATTGGTTTAGATTAAAGC-TTAAACATTGCAAAAGTTCATCAAAATTA-AATTTGTTCT-ATCAGG-AAAAT-GTGT-CGGAAGTAT-TATG-AA-A-AT-AAGAT----TA-TC-----CTACATGCT---AA--GAACG-ATG-----TTTTTTGAA-TTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCGTTGGACGTTGG--ATCCGGATA---CCC
gi|5 : AACTTCGCAAATTTTGAA-GCGACGG-GCGG---GACTTTGGTTTCGACCTTTTCA--CAA-AT---A-ATTA---TGGA------TATATCAATCTATCATTTGATAGC-AAAAAAGAACTCAAATGTAGCACTAAC--TT-CTATGCTATTGT-GTTTTGAACTTAAAAAT-TCGGGTTTTT-GAAATTA--AATT-----AA------GTTTGCT-ACTT-TTGTTAATCTTT-CATCAA--TTTTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAATTTCATCAAA--TA-AACTTGT--C-ATCAGG-ATAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----AATTC-----TTACCTGCT---TG--GAACG-ATGTTGTTTTTTTTTAATTTG-GCTCC--GCGT-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGT
gi|6 : GGG-TCCAAAAT---TTTCCTACCCCTTCAATGAACTTCGCAAATTTTGAA-GCGACGG-GTGG---GACTTTGGTTTCGACCTTTTAA----------------------------------TCAATCTATCATTTGGTGGC-AAAAA-GGATTCAAG-GTAGCAGTCAC--TT-CTATGCTATTGT-GTTTTGAACTTAAAAAT-TCGGGTTT------------------GTCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTCAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCCTAAAA--T----TTTGT--C-ATCAGG-AAAAA-GTGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----AATTC-----CTACCTGCT---AA--GAACG-ATG-----TTTTTT-AATTTG-GCTCC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGTG
gi|7 : TGGC-AAAAAAGGACTCAAG-GTAGCACGAAC--TT-CTATGCTAATGT-GTTTTGAACTTAAAAAT-TCGGGTTTTT-GAAATGA--AATT-TATCAGTTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TATTAATGG-CGATTGTTTTAGATTAAAGC-TTAAACATTGC-AAAGTTCATCAAA--TA-AATATGT--C-ATCAGG-AAAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGATCCCATATTC-----CTACCTGCT---TG--GAACG-ATT-----TTTTTTTAATTTG-GCTTC--GCGG-GC-T-TTGGATCCCTCCG-CGGACGTTGG--ATCCGAATA---CCCGGTGTt
gi|8 : AGTATTGTGC-G-ATAAGAACGTCCCCTATATATTTCATACAAATCGAGATTTTT-CCAAACA--GAATGCAAAATTTTATTTA-TA-ATTTTCTGG-----------A--------------A---AAGA----T-C-A-A------------TGAAAACTGTAAAACCCCACATTC--CT-AAATATAAAACT--AA----------------------------ATTGCT-CCG-TGTTTT-ATGGAT-CATTT--GAAAAT-C--TTGCT--CCGTG-GTT-AGCGGA-TCCAAAAA---TTTTCTGCCCCTTCAATGAACTTCGCAAAT
gi|9 : cgtacTCATTGTTTGCT-ACTG-TCGTTAATCTTT-CATCAA--TTTTAATGG-CCATTGTTTTAGATTAAAGC-TTAAACATTGT-AAAGTTCATCAAA--TA-AATTTGT--C-ATCAGG-AAAAA-GCGT-CAAAAGTA--TATGAAA-A-AT-AAGAT----TATTT-----CTACTTGCTTGGAACGGAACG-ATG-----TATTTTGAATTTG-GCTCT--GCAG-GC-T-TTGG----------------------ATCCGGATA---CCCGG