lowQualScore : 2222222222222222222222222222222222222222222222222222222
lowQualScore : 1 1111111111111111111 11111111 11111 22222222 3333 1111111111111111111111111111111111111111111111111111111 222 1 55555555555555 22222222222222 1 1111111111111111111 88888888888888888888888888888888888888888888888888888888 1 1 11111
lowQualScore : 3 6 4 4 3 6 2 2 5 1111111111111111111 22222222 44 3 3 55 5 5 6 99999 6 6 99999999 0 2222 9999999999999999999999999999999999999999999999999999999 222 5 66666666666666 33333333333333 3 5 2 3 3 44 33 777777 1111111111111111111 5 2 6 3 3 2 00000000000000000000000000000000000000000000000000000000 4 0 3 55555 4
lowQualScore : . . . . . . . . . ................... ........ .. . . .. . . . ..... . . ........ . .... ....................................................... ... . .............. .............. . . . . . .. .. ...... ................... . . . . . . ........................................................ . . . ..... .
lowQualScore : 8 0 2 0 3 2 9 7 0 0000000000000000000 11111111 66 3 3 00 3 7 7 33333 7 0 00000000 8 5555 3333333333333333333333333333333333333333333333333333333 000 0 33333333333333 77777777777777 0 0 5 3 3 66 99 777777 1111111111111111111 0 9 2 3 6 8 77777777777777777777777777777777777777777777777777777777 5 9 6 55555 4
consensus : TATTTCACCAGACCCGA-GCT-TC-TACATCCAT-TGACA-GCCTTAAA-GGAGG-------T---CG------TGACATCGCTATC--------T--GA-GACG-CGTTATCCGATTGGCT--CGTCATTNT-TCGGACTGTCTCGGCTTT-TTT--GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAAACA---AAAACGATGTCGATCCA---------GAG--------------GTATT---------------G-A------TAAATAATTTCATAGATAGTTATAAGAA-AATGCTCATCTAA-GTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCGTACGTGTGCGT-TTATTTNTGCATGGANGCGAGCCAATCGGATAACG-CGTC-TCA--GA--TA------GCGATGTCA------CG---A-------CCTCC-TTTAAGGCTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTAT-GGGGT-----TTGGAT-GAAAGA
Reference ( gi|1 ) : TAATCCACCAGGCCCGA-GCT-TC-TACATCCAT-TGACA-GCCTTAAA-GGAGG-------T---TG------TGACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGCT--CGTCATTAT-TCGGACTGTCTCAGCTTT-TTT--GTTACCACTAAA-GGGAAATACACAAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAAACC---AAAACGATGTCGATCCA---------GAA--------------GTATT---------------G-A------TAAATAAATCCATAGATAGTTATAAGAAGAATGCTCATTTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACATGTGCGTGTTATTTATGCATGCACGCGAGCCAATCGGATAACG-CGTC-TCA--GA--TA------GCGATGTCA------CA---A-------CCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGCCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTAT-GGGGT-----TTGGAT-GAAGGA
gi|2 : TATTTCACCAGACCCGA-GCT-TC-TACATCCAT-TGACA-GTCTAAAA-AGAG-------------G------TGACATCGCTATC--------T--GA-GACG-CATTATCCGATTGGCTTGCGTC
gi|5 : gtcttagaggaggttgtgacatcgctatctgagacgcgttatccgattggctcatcattattcggactgtctcagcttttttggtatcactaaagggaaatacacgaaagagcttggcgcgagtttttgaagaaaacaaaaacgatgtcgatccagagtttttcgaaagcttgttttaataaataatttcatagatagttataaaaatgctcatatataacctctaaaaagatttaaagtttggaacacgtttaagcaatcgtacgtgtgcgttttatttctgcatgTATTTCACCAGACTCGA-GCT-TC-TACATCCAT-TGACA-GTCT------------------------------GACATCGATATC--------T--GA-GACG-CGTTATCCGATTGGCT--CGaacgacataatacaactaataaaactgatggtatggggt
gi|8 : tacacgaaagagcttggcgcgagtttttaaagaaaacaaaacgatgtcgatccagagtatttcgaaagcttgttttgataaatgatttcatagatagctataagaagaatgctcatctaagtatataacctctaaaaagatttaaagtttagaacacgtttaagcaatcaatttatgcatagaagTATTTCACCAGACTCGAAGCT-TC-TACATCCAT-TGACA-ATCTTAAAGGGAGG-------T---T-------TGACATCGCTGCC--------T--GA-GACGCCGTTGTCCGATTGGCT--CGTCATTATGTCGGACTGTCTCAGGTTT-TTT--TATACC-CTAAA-GGGAAATACACGAAaacgatgaattaaaaagggtaaatttgttgaagga
gi|9 : tctgtgatcagcgcgtcatggctttcgtagtgctacttgcttctttcatctaaaccatacaccatcagttttattagtgtattatttgtcgtttatatatTATTTCACAAGACCCGA-GCT-TC-TACATTCAT-TGACA-GCATTAAA-GGAAG-------T---TG------TGACATCGCTA
gi|10 : TATTTCACCAGACCCAA-GCT-TC-TACATCCAT-TGACA-GCCTTAAA-GGAGG-------T---CG------Taacaacataatacaactaataaaactgatggtattgggtttggatgaaagcagcaagtagcattacattagcatgacgcgctgatcacagaaatccttttagtaaagttgtatgtaccttgtgaatcggcctcgatgcaggcatcccctataagtttacatattttgttgcgcacctttacat
gi|11 : tTATTTCACCGGACCCGA-GCTCTCGCGCGCCCAT-TGAAA-CTCTTAAA-GGAGG-------TCCATGAGGTCTTGACATCACTTTC--------T--GT-GTTG-CGTTGTCTGAGTGGCT--ATTCCATCC-TCCGACGATTTCGGCCTT-TTT--CCAAGCAATAAATAAAAAATATACGAAAGCTCTCAAAGGCGAGGCGCGTGTCTTTAAAAAaacgacagaatacaacaaataaaactgatggtatggggtttggatgaaacgaagcaagtagtattacattagcatgacgtgctgatcacaaaaattctttcaataaagttgttggtacttgtaaatcagcctcgaagcaggtagcccctgttttatttacatattttgttgcgcacctttaca
gi|17 : tgcgTATTTCACCAGACGCGA-GCT-TCTTACATCCTTCTGACATGCGTTAAaacggcagaatacgataaataaagctgatggcatgggttt
gi|6 : ATTCACCAGGCCCGA-GCT-TC-TACATCCAT-TGACA-GTCTTAAA-GGAGG-------T---TG------TGACATCGCTATC--------T--GA-GACG-CGTTATCCGATTGGCT--aacgacagaaatccactcataactgatggtatccgagtgacccctgaatgaagaagcaacgatacactaatccaacttcatgaccgtgctggtca
gi|23 : actttttagcagctttaaaatgaaccataacatgtggagactactataattaaatggtacgcaacaatatatgtaaacaaacatgatcacaacgtacaaacaattttactgaaaaaatgtctgtaatcagcgcgtcatgctaatgtagtgctacctgcttccttcatccaaaccccataccatcagtttattagttgtTTCACCAGACCCGA-GCT-TC-TACATCCAA-TGGCA-GTCTTAAA-AGAGG-------T---CG------TGACAACGCTATT--------T--GA-GA
gi|16 : CCCGA-GCT-TC-TACATCCAT-TGACA-GCCTTTAA-GGAGGTTGTGACT---TG------TGACATCGCTATT--------T--GA-GACG-CGTTATCTGATTGGCa
gi|22 : aCT-CT-TACGTCTAT-TTACA-ACCTCAAAAGGAGG-------T---CG------TGACATCACTTTTTATGTCCAT--GATGTCG-CGATGTTTGATTGGAT--Cattgtatttttacatcttacaacctggtatgatgcgtgtaggtaaatattctactaaaatgtg
gi|15 : CT-TT-TACTTCCAA-TGACA-GCCTGA----CAGG-------C---CA------TGACACCACT
gi|24 : ga-TACTTCCAA-TGACA-GTCTTGCA-GGAGA-------T---CA------TGATATTGGGATT--------TTTGT-GTCG-CGTTATCTGATTGacaagccaggacacgaatgatgaaaagacggcatggattggatgaaagtacacattcgcagaaatactttagtaaagttgtttatactcatgaatctgtccccaagcgggtacctcctttttgttgac
gi|27 : CAT-TGACA-GCATTAAA-GGAAG-------T---TG------TGACATCGCTATatt
gi|2 : -GTCTTAGA-GGAGG-------T---TG------TGACATCGCTATC--------T--GA-GACG-CGTTATCCGATTGGCT--CATCATTAT-TCGGACTGTCTCAGCTTT-TTT--GGTATCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTGAAGAAAACA---AAAACGATGTCGATCCA---------GAGTTTTTCGAAAGCTTGTTTT---------------A-A------TAAATAATTTCATAGATAGTTATAAAAA---TGCTCAT-------A------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCGTACGTGTGCGTTTTATTTCTGCATGGACGCAAGCCAATCGGATAATG-CGTC-TCA--GA--TA------GCGATGTC------------A-------CCTCT-TTTTAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------GAAATAAACGACATAA-TA-----CA-----------------ACTAATAAAA-CTGATGGTAT-GGGGT-----
gi|20 : TTAAA-GGAGG-------T---TG------TGATATCGCTATT--------T--GA-GACG-CGTTGTCCGATTGGCT--CGTCATTTT-TTGGACTGTCTCAGCTTT-TTT--GCTACCACTAAA-
gi|12 : AGA-GGAGG-------T---TA------TGACATCACTTTT--------T--GT-GTCG-CGTTATCTGATTGGCT--CTTTGATCT-TCCGACAATCTCGG
gi|18 : ttcccccagaACG-CGTTATCCGATTGGCT--CGTCATTTT-CCGGACTGTCTCAGCTTT-TTTTAGT-ACCACTAAA-GGGAAATACACGAAAGAGCAT--------GGCGCGAGTTTTTAAAGAAAACA---AAAACGtcctggaggaatatgaatttgccaaaagcgtgtgttgttgaaagcgaaaatgacttaaagaaatgtaaatccagcttattttatagtaaaacgtaactttattgaatttattatttgagaatgataatggatataa
gi|7 : ATCCGATTGGCT--CGTCATTAT-TCGGACTGTCTGGGCTTTGTTT--GGTACCACTAAA-GGGAAATACACGAAAGAACTT--------GGCGAGAG-TTTTAAAAAAAACCACAAAAACGATATCGATCTAGAGTAATTCGAA--------------ACATT---------------GTATTTTTTTAAATAATGTCATTAATGGTTATAAGAATAATGCTTCTCTAAAGTATACATGTATAACCTCTTAAAGGATTTAAAGGTTGAAATACTTTTGAGCAATCATACATGTACATAT
gi|5 : TACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAAAC----AAAACGATGTCGATCCA---------GA---------------GTATTTCGAAAGCTTGTTTTG-A------TAAATGATTTCATAGATAGCTATAAGAAGAATGCTCATCTAA-GTA------TATAACCTCTAAAAAGATTTAAAGTTTAGAACACGTTTAAGCAATCA--------------ATTTATGCATAGAAGCGAGCCAATCGGATAACG-CGTC-TCA--GA--TA------TCGATGTC------------------------------AGACTGTCA-ATGGATGTA-GA-AGC-TCGAGTCTGGT-------------G-------------AA--A-----TA-----------------AACGAT-GAA-TTAA----AA-AGGGTAAA--TTTGTT-GAAGGAgcgt
gi|8 : CGAGCCAATCGGACAACGGCGTC-TCA--GG--CA------GCGATGTCA-------A---A-------CCTCCCTTTAAGATTGTCA-ATGGATGTA-GA-AGCTTCGAGTCTGGT-------------GAAAT---------AA-TA-----TATAAACGACAAATAATACACTAATAAAA-CTGATGGTGT-ATGGT-----TTAGAT-GAAAGA
gi|18 : tctgtgatcagcgcgtcatggctttcgtagtgctacttgctCGAGCCAATCGGATAACG-CGTtcattatgtcggactgtctcaggtttttttataccctaaagggaaatacacgaa
gi|20 : CGAGCCAATCGGACAACG-CGTC-TCA--AA--TA------GCGATATCA------CA---A-------CCTCC-TTTAAtcattttccggactgtctcagctttttttagtaccactaaagggaaatacacgaaagagcatggcgcgagtttttaaagaaaacaaaaacg
gi|2 : GAGCCAATCGGATAACG-CGTC-TCA--GA--TA------GCGATGTCA------CA---A-------CCTCC-TCTAAGACtcattttttggactgtctcagcttttttgctaccactaaa
gi|12 : GAGCCAATCAGATAACG-CGAC-ACA--AA--AA------GTGATGTCA------TA---A-------CCTCC-TCTatcattattcggactgtctcagcttttttggtatcactaaagggaaatacacgaaagagcttggcgcgagtttttgaagaaaacaaaaacgatgtcgatccagagtttttcgaaagcttgttttaataaataatttcatagatagttataaaaatgctcatatataacctctaaaaagatttaaagtttggaacacgtttaagcaatcgtacgtgtgcgttttatttctgcatggacgcaagccaatcggataatgcgtctcagatagcgatgtcacctctttttagactgtcaatggatgtagaagctcgggtctggtgaaataaacgacataatacaactaataaaactgatggtatggggt
gi|22 : ttcccccagaGATCCAATCAAACATCG-CGACATCATGGA--CATAAAAAGTGATGTCA------CG---A-------CCTCCTTTTGAGGTTGTAA-ATAGACGTA-AG-AGtttgatcttccgacaatctcggtcctggaggaatatgaatttgccaaaagcgtgtgttgttgaaagcgaaaatgacttaaagaaatgtaaatccagcttattttatagtaaaacgtaactttattgaatttattatttgagaatgataatggatataa
gi|6 : AGCCAATCGGATAACG-CGTC-TCA--GA--TA------GCGATGTCA------CA---A-------CCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGCCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTAT-GGGGT-----TTGGAT-GAAGGA
gi|11 : actttttagcagctttaaaatgaaccataacatgtggagactactataattaaatggtacgcaacaatatatgtaaacaaacatgatcacaacgtacaaacaattttactgaaaaaatgtctgtaatcagcgcgtcatgctaatgtagtgctacctgctAGCCACTCAGACAACG-CAAC-ACA--GA--AA------GTGATGTCAAGACCTCATGGA-------CCTCC-TTTAAGAGTTTCA-ATGGGCGCGCGAGAGC-TCGGGTCCGGTGAAATAAACGGCAG-------------AA-TA-----CG-----------------ATAAAT-AAAGCTGATGGCAT-GGGTT-----T
gi|16 : tgcgtttttaaagacacgcgcctcgcctttgagagctttcgtatattttttatttattgcttggaaaaaggccgaaatcgtcggaggatggaatGCCAATCAGATAACG-CGTC-TCA--AA--TA------GCGATGTCA------CA---AGTCACAACCTCC-TTAAAGGCTGTCA-ATGGATGTA-GA-AGC-TCGGG
gi|24 : aCAATCAGATAACG-CGAC-ACA--AAAATC------CCAATATCA------TG---A-------TCTCC-TGCAAGACTGTCA-TTGGAAGTA-attgtatttttacatcttacaacctggtatgatgcgtgtaggtaaatattctactaaaatgtg
gi|23 : TC-TCA--AA--TA------GCGTTGTCA------CG---A-------CCTCT-TTTAAGACTGCCA-TTGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-att
gi|27 : A--TA------GCGATGTCA------CA---A-------CTTCC-TTTAATGCTGTCA-ATGa
gi|9 : --TA------GCGATGTCA------CA---A-------CTTCC-TTTAATGCTGTCA-ATGAATGTA-GA-AGC-TCGGGTCTTGT-------------GAAATAAACAACATAA-TA-----CA-----------------ACTAATAAAA-CTGATGGTAT-TGGGT-----TTGGAT-GAAAG
gi|15 : A------GTGGTGTCA------TG---G-------CCTG----TCAGGCTGTCA-TTGGAAGTA-AA-AGA--CAAGCCAGG-----------------------------A-CA-----CG-----------------AATGAT-GAA-AAGACGGCAT-GGA-------TTGGAT-GAAAGcagcaagtagcattacattagcatgacgcgctgatcacagaaatccttttagtaaagttgtatgtaccttgtgaatcggcctcgatgcaggcatcccctataagtttacatattttgttgcgcacctttacat
gi|10 : gaA------CG---A-------CCTCC-TTTAAGGCTGTCA-ATGGATGTA-GA-AGC-TTGGGTCTGGTGAAATAAACGACAG-------------AA-TA-----CA-----------------ACAAATAAAA-CTGATGGTAT-GGGGT-----TTGGAT-GAAtacacattcgcagaaatactttagtaaagttgtttatactcatgaatctgtccccaagcgggtacctcctttttgttgac
gi|17 : tTGTCAGAAGGATGTAAGA-AGC-TCGCGTCTGGT-------------G-------------AAATAAACGACAGAAATCC----------ACTCAT-AA--CTGATGGTATCCGAGTGACCCCTGAAT-GAAGAAacgaagcaagtagtattacattagcatgacgtgctgatcacaaaaattctttcaataaagttgttggtacttgtaaatcagcctcgaagcaggtagcccctgttttatttacatattttgttgcgcacctttaca
gi|3 : ttaacgca-------------G-------------AA-TA-----CA-----------------ACTAAT-AAAACTGATGGTAT-GGGGT-----TTGGATGGAAAGAgcaacgatacactaatccaacttcatgaccgtgctggtca
gi|4 : ctcgggttctggtagtgaaataaacgaca-------------G-------------AA-TA-----CA-----------------ACTCAT-AAAACCGGTGTTAT-GGGAT-----ATGGAT-GAAAGAagctagtagcactacattagcatggacgcgcagatcaacagaaaaaattctttcagtaaagttgttgtaccttgtgaatcgcctcgaagcaggtagccccgtttgttaacatattgttgttgcgcacctttacatatattagtaatctcacaagaggtcattttaaaagcttgctaaaagtagaaactatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatttttttgagaaggggggggggtggtgtaacaacaactgcctgtgttcatatacct
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TGTGCATATTATAATTATACTAATATATGTAGTATCTCACAAGTGGTCATCTTAAAAGCTTGCTAAAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATTTTTTTTTTTGAGAGAAGGGGGAGGGGGGGGGGGGGTTAACTCCAGATGCCTGT
Unaligned ( gi|14 ): AGTGACAAAACATTGATGACTAGTATACTTGGATTCGGTTGGAAGACATATGTAGATCTACAGCTATATTAGCTAAACGAAGTGTTCGTAGAAATTCCTTCGGTAAAGTTGTTAATACATGTACTTCGTCTTGAATCGGGCAGCCACCGGTTCGCTCACAGTATTGTGTTGTGCTCCTTTACGTATCTCACATGATCTGACAGAGAG
Unaligned ( gi|19 ): CCTTTTAAATCGGCCTCGAAACAGGAAGGCCCCCTGTTTGTTTATTTAGTTACATAGATTAGTATCTCCACTATGGCATTTTTAAAAGCTTGTTAAAATTAGAAACTA
Unaligned ( gi|21 ): GATGAAATACAGAAGTAAAACCATATTAGCCAGACGGGATATTCTGAGAAATTCCTTCGGTAAAGTTGTTACATGTAGCTGTGTCCGG
Unaligned ( gi|25 ): ATTAATATATATACATCTCACAAGTGGTCATTTCCAAAGCTTACCGAAAGTAGA
Unaligned ( gi|26 ): TTACTCACAAGTGGTCATTTTTAAAGGCTTGCTAAAAGTAGAA
Alignments
lowQualScore : 11111111111111
lowQualScore : 111111111111111 111111 22222222 11 77777777777777 111 3 2222 222222 1111 222222222222 88888888888888888888888888888888888888888888888888888888 1 1
lowQualScore : 8 6 5 7 333333333333333 666 000000 55 55 4 0 4 4 1 4 5 666 5 44444444 11 0 66666666666666 777 0 3 0 0000 888888 55 4 0 7777 1 1 6 888888888888 44 4 4 8 4 4 22222222222222222222222222222222222222222222222222222222 3 0 5
lowQualScore : . . . . ............... ... ...... .. .. . . . . . . . ... . ........ .. . .............. ... . . . .... ...... .. . . .... . . . ............ .. . . . . . ........................................................ . . .
lowQualScore : 0 7 7 3 555555555555555 444 555555 55 55 0 5 0 0 0 4 7 111 7 22222222 00 8 22222222222222 888 2 2 0 5555 888888 22 2 2 2222 0 0 7 000000000000 66 0 0 0 0 0 66666666666666666666666666666666666666666666666666666666 3 0 0
consensus : TATTTCACCAGACCCGA-GCT-TC-TACGTCCATTGACAGCCTTAAA-GGAGG-------TC------GT---GACATCGC------TATT--T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTNT-TCGGACTGTCTCGGCTTT-TTT-GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGATGTCGATCCAGAGTATTTCGAAAGCTTGTN--TTGATAAATAATTTCATAGATAGTTATAAGAAGAATGCTCATCTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACGTGTGCG-T-TTATTTATGCATGGANGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------GACCTCC-TTTAAGAC-TGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAAGA
Reference ( family-4833 ) : TATTTCACCAGACCCGA-GCT-TC-TACATCCATTGACAGCCTTAAA-GGAGG-------TC------GT---GACATCGC------TATC--T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTNT-TCGGACTGTCTCGGCTTT-TTT-GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGATGTCGATCCAGAG--------------GTA--TTGATAAATAATTTCATAGATAGTTATAAGAA-AATGCTCATCT-AAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCGTACGTGTGCG-T-TTATTTNTGCATGGANGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------GACCTCC-TTTAAGGC-TGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAAGA
gi|1 : TAATCCACCAGGCCCGA-GCT-TC-TACATCCATTGACAGCCTTAAA-GGAGG-------TT------GT---GACATCGC------TATT--T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTAT-TCGGACTGTCTCAGCTTT-TTT-GTTACCACTAAA-GGGAAATACACAAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACCAAAACGATGTCGATCCAGAA--------------GTA--TTGATAAATAAATCCATAGATAGTTATAAGAAGAATGCTCATTTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACATGTGCG-TGTTATTTATGCATGCACGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------AACCTCC-TTTAAGAC-TGTCA-ATGGATGTA-GA-AGC-TCGGGCCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAGGA
gi|10 : ---AC------GACCTCC-TTTAAGGC-TGTCA-ATGGATGTA-GA-AGC-TTGGGTCTGGTGAAATAAACGACAG-------------AA-TA-----CA-----------------ACAAATAAAA-CTGATGGTATGGGGTTTGGAT-GAAA
gi|11 : tTATTTCACCGGACCCGA-GCTCTCGCGCGCCCATTGAAACTCTTAAA-GGAGG-------TCCATGAGGTCTTGACATCAC------TTTC--T--GT-GTTG-CGTTGTCTGAGTGGC-TATTCCATCC-TCCGACGATTTCGGCCTT-TTT-CCAAGCAATAAATAAAAAATATACGAAAGCTCTCAAAGGCGAGGCGCGTGTCTTTAAAAAcgaagcaagtagtattacattagcatgacgtgctgatcacaaaaattctttcaataaagttgttggtacttgtaaatcagcctcgaagcaggtagcccctgttttatttacatattttgttgcgcacctttaca
gi|11 : tgcgATGGAAT--AGCCACTCAGACAACG-CAACACAGAAAGTGATGTCAAGACCTCATGGACCTCC-TTTAAGAG-TTTCA-ATGGGCGCGCGAGAGC-TCGGGTCCGGTGAAATAAACGGCAG-------------AA-TA-----CG-----------------ATAAAT-AAAGCTGATGGCATGGGTTTaacggcagaatacgataaataaagctgatggcatgggttt
gi|12 : tgcgtttttaaagacacgcgcctcgcctttgagagctttcgtatattttttatttattgcttggaaaaaggccgaaatcgtcggaggAGA-GGAGG-------TT------AT---GACATCAC------TTTT--T--GT-GTCG-CGTTATCTGATTGGC-TCTTTGATCT-TCCGACAATCTCGG
gi|15 : ttcccccagaAGTGGTGTC---AT------GGCCTG----TCAGGC-TGTCA-TTGGAAGTA-AA-AGA--CAAGCCAGG-----------------------------A-CA-----CG-----------------AATGAT-GAA-AAGACGGCATGGA--TTGGAT-GAAAGtcctggaggaatatgaatttgccaaaagcgtgtgttgttgaaagcgaaaatgacttaaagaaatgtaaatccagcttattttatagtaaaacgtaactttattgaatttattatttgagaatgataatggatataa
gi|16 : gaACCCGA-GCT-TC-TACATCCATTGACAGCCTTTAA-GGAGGTTGTGACTT------GT---GACATCGC------TATT--T--GA-GACG-CGTTATCTGATTGGCATTGT-ATTTT-Ttacacattcgcagaaatactttagtaaagttgtttatactcatgaatctgtccccaagcgggtacctcctttttgttgac
gi|17 : TTAACGCATGTCAGAAGGATGTAAGA-AGC-TCGCGTCTGGT-------------G-------------AAATAAACGACAGAAATCC----------ACTCAT-AA--CTGATGGTATacatcttacaacctggtatgatgcgtgtaggtaaatattctactaaaatgtg
gi|18 : ACG-CGTTATCCGATTGGC-TCGTCATTTT-CCGGACTGTCTCAGCTTT-TTTTAGTACCACTAAA-GGGAAATACACGAAAGAGCAT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGccgagtgacccctgaatgaagaagcaacgatacactaatccaacttcatgaccgtgctggtca
gi|2 : GTCTTAGA-GGAGG-------TT------GT---GACATCGC------TATC--T--GA-GACG-CGTTATCCGATTGGC-TCATCATTAT-TCGGACTGTCTCAGCTTT-TTT-GGTATCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTGAAGAAA--ACAAAAACGATGTCGATCCAGAGTTTTTCGAAAGCTTGTT--TTAATAAATAATTTCATAGATAGTTATA--AA-AATGCTCA-------TA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCGTACGTGTGCGTT-TTATTTCTGCATGGACGCAAGCCAATCGGATAATG-CGTCTCAGATAGCGATGTC------------ACCTCT-TTTTAGAC-TGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------GAAATAAACGACATAA-TA-----CA-----------------ACTAATAAAA-CTGATGGTATGGGGT
gi|20 : TTAAA-GGAGG-------TT------GT---GATATCGC------TATT--T--GA-GACG-CGTTGTCCGATTGGC-TCGTCATTTT-TTGGACTGTCTCAGCTTT-TTT-GCTACCACTAAA-
gi|22 : CT-CT-TACGTCTATTTACAACCTCAAAAGGAGG-------TC------GT---GACATCACTTTTTATGTCCAT--GATGTCG-CGATGTTTGATTGGA-TC
gi|23 : TTTCACCAGACCCGA-GCT-TC-TACATCCAATGGCAGTCTTAAA-AGAGG-------TC------GT---GACAACGC------TATT--T--GA-GA
gi|24 : -TACTTCCAATGACAGTCTTGCA-GGAGA-------TC------AT---GATATTGG------GATT--TTTGT-GTCG-CGTTATCTGATTG
gi|27 : CATTGACAGCATTAAA-GGAAG-------TT------GT---GACATCGC------TATatt
gi|3 : -------------G-------------AA-TA-----CA-----------------ACTAAT-AAAACTGATGGTATGGGGTTTGGATGGAAAGA
gi|4 : ctcgggttctggtagtgaaataaacgaca-------------G-------------AA-TA-----CA-----------------ACTCAT-AAAACCGGTGTTATGGGATATGGAT-GAAAGAagctagtagcactacattagcatggacgcgcagatcaacagaaaaaattctttcagtaaagttgttgtaccttgtgaatcgcctcgaagcaggtagccccgtttgttaacatattgttgttgcgcacctttacatatattagtaatctcacaagaggtcattttaaaagcttgctaaaagtagaaactatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatttttttgagaaggggggggggtggtgtaacaacaactgcctgtgttcatatacct
gi|5 : aataaacgacaTACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAA-CGATGTCGATCCAGAGTATTTCGAAAGCTTGTT--TTGATAAATGATTTCATAGATAGCTATAAGAAGAATGCTCATCT-AAGTA------TATAACCTCTAAAAAGATTTAAAGTTTAGAACACGTTTAAGCAATCA---------------ATTTATGCATAGAAGCGAGCCAATCGGATAACG-CGTCTCAGATATCGATGTC-----------------------AGAC-TGTCA-ATGGATGTA-GA-AGC-TCGAGTCTGGT-------------G-------------A-------------------------------AAT-AAA-C-GATGagcaagtagcactacattagcatgacgcgctgatcacaaaaattctttcagtaaagctgtttgtatcttctgaattgccctcgacgcaggtagcccctgtttgtttacatattttgttgggcacctttacgtatatattattatctcacaagtggtcattttaaaagctttctaaaagtagtacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatatttttttgagaagggggagggggggggggggccacatgtaacttcaggtgcc
gi|6 : AGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------AACCTCC-TTTAAGAC-TGTCA-ATGGATGTA-GA-AGC-TCGGGCCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAGGAaattaaaaagggtaaatttgttgaagga
gi|7 : actttttagcagctttaaaatgaaccataacatgtggagactactataattaaatggtacgcaacaatatatgtaaacaaacatgatcacaacgtacaaacaattttactgaaaaaatgtctgtaatcagcgcgtcatgctaatgtagtgctacctgctATCCGATTGGC-TCGTCATTAT-TCGGACTGTCTGGGCTTTGTTT-GGTACCACTAAA-GGGAAATACACGAAAGAACTT--------GGCGAGAGTTTTAAAAAAAACCACAAAAACGATATCGATCTAGAGTAATTCGAAACATTGTATTTTTTTAAATAATGTCATTAATGGTTATAAGAATAATGCTTCTCTAAAGTATACATGTATAACCTCTTAAAGGATTTAAAGGTTGAAATACTTTTGAGCAATCATACATGTACA-T-
gi|8 : CGAGCCAATCGGACAACGGCGTCTCAGGCAGCGATGTC---A-------AACCTCCCTTTAAGAT-TGTCA-ATGGATGTA-GA-AGCTTCGAGTCTGGT-------------GAAAT---------AA-TA-----TATAAACGACAAATAATACACTAATAAAA-CTGATGGTGTATGGTTTAGAT-GAAAGAatgcgt
gi|8 : tctgtgatcagcgcgtcatggctttcgtagtgctacttgctTATTTCACCAGACTCGAAGCT-TC-TACATCCATTGACAATCTTAAAGGGAGG-------TT-------T---GACATCGC------TGCC--T--GA-GACGCCGTTGTCCGATTGGC-TCGTCATTATGTCGGACTGTCTCAGGTTT-TTT-TATACC-CTAAA-GGGAAATACACGAAtcattatgtcggactgtctcaggtttttttataccctaaagggaaatacacgaa
gi|9 : tctgtgatcagcgcgtcatggctttcgtagtgctacttgcttctttcatctaaaccatacaccatcagttttattagtgtattatttgtcgtttatatatTAGCGATGTC---AC------AACTTCC-TTTAATGC-TGTCA-ATGAATGTA-GA-AGC-TCGGGTCTTGT-------------GAAATAAACAACATAA-TA-----CA-----------------ACTAATAAAA-CTGATGGTATTGGGTTTGGAT-GAAAG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTGCATATTATAATTATACTAATATATGTAGTATCTCACAAGTGGTCATCTTAAAAGCTTGCTAAAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATTTTTTTTTTTGAGAGAAGGGGGAGGGGGGGGGGGGGTTAACTCCAGATGCCTGT
Unaligned ( gi|14 ): AGTGACAAAACATTGATGACTAGTATACTTGGATTCGGTTGGAAGACATATGTAGATCTACAGCTATATTAGCTAAACGAAGTGTTCGTAGAAATTCCTTCGGTAAAGTTGTTAATACATGTACTTCGTCTTGAATCGGGCAGCCACCGGTTCGCTCACAGTATTGTGTTGTGCTCCTTTACGTATCTCACATGATCTGACAGAGAG
Unaligned ( gi|19 ): CCTTTTAAATCGGCCTCGAAACAGGAAGGCCCCCTGTTTGTTTATTTAGTTACATAGATTAGTATCTCCACTATGGCATTTTTAAAAGCTTGTTAAAATTAGAAACTA
Unaligned ( gi|21 ): GATGAAATACAGAAGTAAAACCATATTAGCCAGACGGGATATTCTGAGAAATTCCTTCGGTAAAGTTGTTACATGTAGCTGTGTCCGG
Unaligned ( gi|25 ): ATTAATATATATACATCTCACAAGTGGTCATTTCCAAAGCTTACCGAAAGTAGA
Unaligned ( gi|26 ): TTACTCACAAGTGGTCATTTTTAAAGGCTTGCTAAAAGTAGAA
Alignments
lowQualScore : 1 111111111111111 11111111 22222222 11 111 11 222222 1111 222222222222 77777777777777777777777777777777777777777777777777777777 1 1
lowQualScore : 0 8 6 2 8 666666666666666 777 0 66666666 66 4 1 4 4 1 4 5 666 5 44444444 11 0 000 55 33 1 0 3 0 9999 888888 3 4 0 7777 1 6 222222222222 44 3 7 3 3 55555555555555555555555555555555555555555555555555555555 3 0 5
lowQualScore : . . . . . ............... ... . ........ .. . . . . . . . ... . ........ .. . ... .. .. . . . . .... ...... . . . .... . . ............ .. . . . . ........................................................ . . .
lowQualScore : 0 0 7 2 0 777777777777777 000 3 11111111 11 4 4 0 0 0 4 7 111 7 22222222 00 8 222 00 88 0 2 2 2 8888 888888 2 2 2 2222 0 7 333333333333 77 6 3 6 6 55555555555555555555555555555555555555555555555555555555 3 0 0
consensus : TATTTCACCGGACCCGA-GCT-TC-TACGTCCATTGACAGCCTTAAA-GGAGG-------TC------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTNT-TCGGACTGTCTCGGCTTT-TTT-GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGATGTCGATCCAGAGTATTTCGAAAGCTTG--TTTTGATAAATAATTTCATAGATAGTTATAAGAAGAATGCTCATCTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACGTGTGCG-T-TTATTTATGCATGGANGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------GACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAAGA
Reference ( family-4833 ) : TATTTCACCAGACCCGA-GCT-TC-TACGTCCATTGACAGCCTTAAA-GGAGG-------TC------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTNT-TCGGACTGTCTCGGCTTT-TTT-GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGATGTCGATCCAGAGTATTTCGAAAGCTTG--TNTTGATAAATAATTTCATAGATAGTTATAAGAAGAATGCTCATCTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACGTGTGCG-T-TTATTTATGCATGGANGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------GACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAAGA
gi|1 : TAATCCACCAGGCCCGA-GCT-TC-TACATCCATTGACAGCCTTAAA-GGAGG-------TT------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTAT-TCGGACTGTCTCAGCTTT-TTT-GTTACCACTAAA-GGGAAATACACAAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACCAAAACGATGTCGATCCAGAA--------------G--TATTGATAAATAAATCCATAGATAGTTATAAGAAGAATGCTCATTTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACATGTGCG-TGTTATTTATGCATGCACGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------AACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGCCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAGGA
gi|10 : ---AC------GACCTCC-TTTAAGGCTGTCA-ATGGATGTA-GA-AGC-TTGGGTCTGGTGAAATAAACGACAG-------------AA-TA-----CA-----------------ACAAATAAAA-CTGATGGTATGGGGTTTGGAT-GAAA
gi|11 : tTATTTCACCGGACCCGA-GCTCTCGCGCGCCCATTGAAACTCTTAAA-GGAGG-------TCCATGAGGTCTTGACATCACTTTC--------T--GT-GTTG-CGTTGTCTGAGTGGC-TATTCCATCC-TCCGACGATTTCGGCCTT-TTT-CCAAGCAATAAATAAAAAATATACGAAAGCTCTCAAAGGCGAGGCGCGTGTCTTTAAAAAcgaagcaagtagtattacattagcatgacgtgctgatcacaaaaattctttcaataaagttgttggtacttgtaaatcagcctcgaagcaggtagcccctgttttatttacatattttgttgcgcacctttaca
gi|11 : tgcgATGGAAT--AGCCACTCAGACAACG-CAACACAGAAAGTGATGTCAAGACCTCATGGACCTCC-TTTAAGAGTTTCA-ATGGGCGCGCGAGAGC-TCGGGTCCGGTGAAATAAACGGCAG-------------AA-TA-----CG-----------------ATAAAT-AAAGCTGATGGCATGGGTTTaacggcagaatacgataaataaagctgatggcatgggttt
gi|12 : tgcgtttttaaagacacgcgcctcgcctttgagagctttcgtatattttttatttattgcttggaaaaaggccgaaatcgtcggaggAGA-GGAGG-------TT------AT---GACATCACTTTT--------T--GT-GTCG-CGTTATCTGATTGGC-TCTTTGATCT-TCCGACAATCTCGG
gi|15 : ttcccccagaAGTGGTGTC---AT------GGCCTG----TCAGGCTGTCA-TTGGAAGTA-AA-AGA--CAAGCCAGG-----------------------------A-CA-----CG-----------------AATGAT-GAA-AAGACGGCATGGA--TTGGAT-GAAAGtcctggaggaatatgaatttgccaaaagcgtgtgttgttgaaagcgaaaatgacttaaagaaatgtaaatccagcttattttatagtaaaacgtaactttattgaatttattatttgagaatgataatggatataa
gi|16 : gaACCCGA-GCT-TC-TACATCCATTGACAGCCTTTAA-GGAGGTTGTGACTT------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCTGATTGGCATTGT-ATTTT-Ttacacattcgcagaaatactttagtaaagttgtttatactcatgaatctgtccccaagcgggtacctcctttttgttgac
gi|17 : TGTCAGAAGGATGTAAGA-AGC-TCGCGTCTGGT-------------G-------------AAATAAACGACAGAAATCC----------ACTCAT-AA--CTGATGGTATacatcttacaacctggtatgatgcgtgtaggtaaatattctactaaaatgtg
gi|18 : ttaacgcaACG-CGTTATCCGATTGGC-TCGTCATTTT-CCGGACTGTCTCAGCTTT-TTTTAGTACCACTAAA-GGGAAATACACGAAAGAGCAT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGccgagtgacccctgaatgaagaagcaacgatacactaatccaacttcatgaccgtgctggtca
gi|2 : GTCTTAGA-GGAGG-------TT------GT---GACATCGCTATC--------T--GA-GACG-CGTTATCCGATTGGC-TCATCATTAT-TCGGACTGTCTCAGCTTT-TTT-GGTATCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTGAAGAAA--ACAAAAACGATGTCGATCCAGAGTTTTTCGAAAGCTTG--TTTTAATAAATAATTTCATAGATAGTTAT---AAAAATGCTCA-------TA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCGTACGTGTGCGTT-TTATTTCTGCATGGACGCAAGCCAATCGGATAATG-CGTCTCAGATAGCGATGTC------------ACCTCT-TTTTAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------GAAATAAACGACATAA-TA-----CA-----------------ACTAATAAAA-CTGATGGTATGGGGT
gi|20 : TTAAA-GGAGG-------TT------GT---GATATCGCTATT--------T--GA-GACG-CGTTGTCCGATTGGC-TCGTCATTTT-TTGGACTGTCTCAGCTTT-TTT-GCTACCACTAAA-
gi|22 : CT-CT-TACGTCTATTTACAACCTCAAAAGGAGG-------TC------GT---GACATCACTTTTTATGTCCAT--GATGTCG-CGATGTTTGATTGGA-TC
gi|23 : TCTCAAATAGCGTTGTC---AC------GACCTCT-TTTAAGACTGCCA-TTGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-
gi|24 : -TACTTCCAATGACAGTCTTGCA-GGAGA-------TC------AT---GATATTGGGATT--------TTTGT-GTCG-CGTTATCTGATTGa
gi|27 : CATTGACAGCATTAAA-GGAAG-------TT------GT---GACATCGCTATatt
gi|3 : -------------G-------------AA-TA-----CA-----------------ACTAAT-AAAACTGATGGTATGGGGTTTGGATGGAAAGA
gi|4 : ctcgggttctggtagtgaaataaacgaca-------------G-------------AA-TA-----CA-----------------ACTCAT-AAAACCGGTGTTATGGGATATGGAT-GAAAGAagctagtagcactacattagcatggacgcgcagatcaacagaaaaaattctttcagtaaagttgttgtaccttgtgaatcgcctcgaagcaggtagccccgtttgttaacatattgttgttgcgcacctttacatatattagtaatctcacaagaggtcattttaaaagcttgctaaaagtagaaactatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatttttttgagaaggggggggggtggtgtaacaacaactgcctgtgttcatatacct
gi|5 : aataaacgacaTACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAA-CGATGTCGATCCAGAGTATTTCGAAAGCTTG--TTTTGATAAATGATTTCATAGATAGCTATAAGAAGAATGCTCATCT-AAGTA------TATAACCTCTAAAAAGATTTAAAGTTTAGAACACGTTTAAGCAATCA---------------ATTTATGCATAGAAGCGAGCCAATCGGATAACG-CGTCTCAGATATCGATGTC-----------------------AGACTGTCA-ATGGATGTA-GA-AGC-TCGAGTCTGGT-------------G-------------A-------------------------------AAT-AAA-C-GATGagcaagtagcactacattagcatgacgcgctgatcacaaaaattctttcagtaaagctgtttgtatcttctgaattgccctcgacgcaggtagcccctgtttgtttacatattttgttgggcacctttacgtatatattattatctcacaagtggtcattttaaaagctttctaaaagtagtacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatatttttttgagaagggggagggggggggggggccacatgtaacttcaggtgcc
gi|6 : AGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------AACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGCCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAGGAaattaaaaagggtaaatttgttgaagga
gi|7 : actttttagcagctttaaaatgaaccataacatgtggagactactataattaaatggtacgcaacaatatatgtaaacaaacatgatcacaacgtacaaacaattttactgaaaaaatgtctgtaatcagcgcgtcatgctaatgtagtgctacctgctATCCGATTGGC-TCGTCATTAT-TCGGACTGTCTGGGCTTTGTTT-GGTACCACTAAA-GGGAAATACACGAAAGAACTT--------GGCGAGAGTTTTAAAAAAAACCACAAAAACGATATCGATCTAGAGTAATTCGAAACATTGTATTTTTTTAAATAATGTCATTAATGGTTATAAGAATAATGCTTCTCTAAAGTATACATGTATAACCTCTTAAAGGATTTAAAGGTTGAAATACTTTTGAGCAATCATACATGTACA-T-
gi|8 : CGAGCCAATCGGACAACGGCGTCTCAGGCAGCGATGTC---A-------AACCTCCCTTTAAGATTGTCA-ATGGATGTA-GA-AGCTTCGAGTCTGGT-------------GAAAT---------AA-TA-----TATAAACGACAAATAATACACTAATAAAA-CTGATGGTGTATGGTTTAGAT-GAAAGAatgcgt
gi|8 : tctgtgatcagcgcgtcatggctttcgtagtgctacttgctTATTTCACCAGACTCGAAGCT-TC-TACATCCATTGACAATCTTAAAGGGAGG-------TT-------T---GACATCGCTGCC--------T--GA-GACGCCGTTGTCCGATTGGC-TCGTCATTATGTCGGACTGTCTCAGGTTT-TTT-TATACC-CTAAA-GGGAAATACACGAAtcattatgtcggactgtctcaggtttttttataccctaaagggaaatacacgaa
gi|9 : tctgtgatcagcgcgtcatggctttcgtagtgctacttgcttctttcatctaaaccatacaccatcagttttattagtgtattatttgtcgtttatatatTAGCGATGTC---AC------AACTTCC-TTTAATGCTGTCA-ATGAATGTA-GA-AGC-TCGGGTCTTGT-------------GAAATAAACAACATAA-TA-----CA-----------------ACTAATAAAA-CTGATGGTATTGGGTTTGGAT-GAAAG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTGCATATTATAATTATACTAATATATGTAGTATCTCACAAGTGGTCATCTTAAAAGCTTGCTAAAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATTTTTTTTTTTGAGAGAAGGGGGAGGGGGGGGGGGGGTTAACTCCAGATGCCTGT
Unaligned ( gi|14 ): AGTGACAAAACATTGATGACTAGTATACTTGGATTCGGTTGGAAGACATATGTAGATCTACAGCTATATTAGCTAAACGAAGTGTTCGTAGAAATTCCTTCGGTAAAGTTGTTAATACATGTACTTCGTCTTGAATCGGGCAGCCACCGGTTCGCTCACAGTATTGTGTTGTGCTCCTTTACGTATCTCACATGATCTGACAGAGAG
Unaligned ( gi|19 ): CCTTTTAAATCGGCCTCGAAACAGGAAGGCCCCCTGTTTGTTTATTTAGTTACATAGATTAGTATCTCCACTATGGCATTTTTAAAAGCTTGTTAAAATTAGAAACTA
Unaligned ( gi|21 ): GATGAAATACAGAAGTAAAACCATATTAGCCAGACGGGATATTCTGAGAAATTCCTTCGGTAAAGTTGTTACATGTAGCTGTGTCCGG
Unaligned ( gi|25 ): ATTAATATATATACATCTCACAAGTGGTCATTTCCAAAGCTTACCGAAAGTAGA
Unaligned ( gi|26 ): TTACTCACAAGTGGTCATTTTTAAAGGCTTGCTAAAAGTAGAA
Alignments
lowQualScore : 1 111111111111111 11111111 22222222 11 1 11 222222 1111 222222222222 77777777777777777777777777777777777777777777777777777777 1 1
lowQualScore : 0 0 8 6 2 8 666666666666666 777 0 66666666 66 4 1 4 4 1 4 5 666 5 44444444 11 0 0 3 55 33 0 3 0 9999 888888 3 4 0 7777 1 6 222222222222 44 3 7 3 3 55555555555555555555555555555555555555555555555555555555 3 0 5
lowQualScore : . . . . . . ............... ... . ........ .. . . . . . . . ... . ........ .. . . . .. .. . . . .... ...... . . . .... . . ............ .. . . . . ........................................................ . . .
lowQualScore : 7 0 0 7 2 0 777777777777777 000 3 11111111 11 4 4 0 0 0 4 7 111 7 22222222 00 8 0 2 00 88 2 2 2 8888 888888 2 2 2 2222 0 7 333333333333 77 6 3 6 6 55555555555555555555555555555555555555555555555555555555 3 0 0
consensus : TATTTCACCGGACCCGA-GCT-TC-TACGTCCATTGACAGCCTTAAA-GGAGG-------TC------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTNT-TCGGACTGTCTCGGCTTT-TTT-GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGATGTCGATCCAGA-GTATTTCGAAAGCTTG--TTTTGATAAATAATTTCATAGATAGTTATAAGAAGAATGCTCATCTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACGTGTGCG-T-TTATTTATGCATGGANGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------GACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAAGA
Reference ( family-4833 ) : TATTTCACCGGACCCGA-GCT-TC-TACGTCCATTGACAGCCTTAAA-GGAGG-------TC------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTNT-TCGGACTGTCTCGGCTTT-TTT-GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGATGTCGATCCAGA-GTATTTCGAAAGCTTG--TTTTGATAAATAATTTCATAGATAGTTATAAGAAGAATGCTCATCTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACGTGTGCG-T-TTATTTATGCATGGANGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------GACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAAGA
gi|1 : TAATCCACCAGGCCCGA-GCT-TC-TACATCCATTGACAGCCTTAAA-GGAGG-------TT------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTAT-TCGGACTGTCTCAGCTTT-TTT-GTTACCACTAAA-GGGAAATACACAAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACCAAAACGATGTCGATCCAGAAGTATT-----------------GATAAATAAATCCATAGATAGTTATAAGAAGAATGCTCATTTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACATGTGCG-TGTTATTTATGCATGCACGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------AACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGCCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAGGA
gi|10 : ---AC------GACCTCC-TTTAAGGCTGTCA-ATGGATGTA-GA-AGC-TTGGGTCTGGTGAAATAAACGACAG-------------AA-TA-----CA-----------------ACAAATAAAA-CTGATGGTATGGGGTTTGGAT-GAAA
gi|11 : tTATTTCACCGGACCCGA-GCTCTCGCGCGCCCATTGAAACTCTTAAA-GGAGG-------TCCATGAGGTCTTGACATCACTTTC--------T--GT-GTTG-CGTTGTCTGAGTGGC-TATTCCATCC-TCCGACGATTTCGGCCTT-TTT-CCAAGCAATAAATAAAAAATATACGAAAGCTCTCAAAGGCGAGGCGCGTGTCTTTAAAAAcgaagcaagtagtattacattagcatgacgtgctgatcacaaaaattctttcaataaagttgttggtacttgtaaatcagcctcgaagcaggtagcccctgttttatttacatattttgttgcgcacctttaca
gi|11 : tgcgATGGAAT--AGCCACTCAGACAACG-CAACACAGAAAGTGATGTCAAGACCTCATGGACCTCC-TTTAAGAGTTTCA-ATGGGCGCGCGAGAGC-TCGGGTCCGGTGAAATAAACGGCAG-------------AA-TA-----CG-----------------ATAAAT-AAAGCTGATGGCATGGGTTTaacggcagaatacgataaataaagctgatggcatgggttt
gi|12 : tgcgtttttaaagacacgcgcctcgcctttgagagctttcgtatattttttatttattgcttggaaaaaggccgaaatcgtcggaggAGA-GGAGG-------TT------AT---GACATCACTTTT--------T--GT-GTCG-CGTTATCTGATTGGC-TCTTTGATCT-TCCGACAATCTCGG
gi|15 : ttcccccagaAGTGGTGTC---AT------GGCCTG----TCAGGCTGTCA-TTGGAAGTA-AA-AGA--CAAGCCAGG-----------------------------A-CA-----CG-----------------AATGAT-GAA-AAGACGGCATGGA--TTGGAT-GAAAGtcctggaggaatatgaatttgccaaaagcgtgtgttgttgaaagcgaaaatgacttaaagaaatgtaaatccagcttattttatagtaaaacgtaactttattgaatttattatttgagaatgataatggatataa
gi|16 : gaACCCGA-GCT-TC-TACATCCATTGACAGCCTTTAA-GGAGGTTGTGACTT------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCTGATTGGCATTGT-ATTTT-Ttacacattcgcagaaatactttagtaaagttgtttatactcatgaatctgtccccaagcgggtacctcctttttgttgac
gi|17 : TGTCAGAAGGATGTAAGA-AGC-TCGCGTCTGGT-------------G-------------AAATAAACGACAGAAATCC----------ACTCAT-AA--CTGATGGTATacatcttacaacctggtatgatgcgtgtaggtaaatattctactaaaatgtg
gi|18 : ttaacgcaACG-CGTTATCCGATTGGC-TCGTCATTTT-CCGGACTGTCTCAGCTTT-TTTTAGTACCACTAAA-GGGAAATACACGAAAGAGCAT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGccgagtgacccctgaatgaagaagcaacgatacactaatccaacttcatgaccgtgctggtca
gi|2 : GTCTTAGA-GGAGG-------TT------GT---GACATCGCTATC--------T--GA-GACG-CGTTATCCGATTGGC-TCATCATTAT-TCGGACTGTCTCAGCTTT-TTT-GGTATCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTGAAGAAA--ACAAAAACGATGTCGATCCAGA-GTTTTTCGAAAGCTTG--TTTTAATAAATAATTTCATAGATAGTTAT---AAAAATGCTCA-------TA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCGTACGTGTGCGTT-TTATTTCTGCATGGACGCAAGCCAATCGGATAATG-CGTCTCAGATAGCGATGTC------------ACCTCT-TTTTAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------GAAATAAACGACATAA-TA-----CA-----------------ACTAATAAAA-CTGATGGTATGGGGT
gi|20 : TTAAA-GGAGG-------TT------GT---GATATCGCTATT--------T--GA-GACG-CGTTGTCCGATTGGC-TCGTCATTTT-TTGGACTGTCTCAGCTTT-TTT-GCTACCACTAAA-
gi|22 : CT-CT-TACGTCTATTTACAACCTCAAAAGGAGG-------TC------GT---GACATCACTTTTTATGTCCAT--GATGTCG-CGATGTTTGATTGGA-TC
gi|23 : TCTCAAATAGCGTTGTC---AC------GACCTCT-TTTAAGACTGCCA-TTGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-
gi|24 : -TACTTCCAATGACAGTCTTGCA-GGAGA-------TC------AT---GATATTGGGATT--------TTTGT-GTCG-CGTTATCTGATTGa
gi|27 : CATTGACAGCATTAAA-GGAAG-------TT------GT---GACATCGCTATatt
gi|3 : -------------G-------------AA-TA-----CA-----------------ACTAAT-AAAACTGATGGTATGGGGTTTGGATGGAAAGA
gi|4 : ctcgggttctggtagtgaaataaacgaca-------------G-------------AA-TA-----CA-----------------ACTCAT-AAAACCGGTGTTATGGGATATGGAT-GAAAGAagctagtagcactacattagcatggacgcgcagatcaacagaaaaaattctttcagtaaagttgttgtaccttgtgaatcgcctcgaagcaggtagccccgtttgttaacatattgttgttgcgcacctttacatatattagtaatctcacaagaggtcattttaaaagcttgctaaaagtagaaactatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatttttttgagaaggggggggggtggtgtaacaacaactgcctgtgttcatatacct
gi|5 : aataaacgacaTACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAA-CGATGTCGATCCAGA-GTATTTCGAAAGCTTG--TTTTGATAAATGATTTCATAGATAGCTATAAGAAGAATGCTCATCT-AAGTA------TATAACCTCTAAAAAGATTTAAAGTTTAGAACACGTTTAAGCAATCA---------------ATTTATGCATAGAAGCGAGCCAATCGGATAACG-CGTCTCAGATATCGATGTC-----------------------AGACTGTCA-ATGGATGTA-GA-AGC-TCGAGTCTGGT-------------G-------------A-------------------------------AAT-AAA-C-GATGagcaagtagcactacattagcatgacgcgctgatcacaaaaattctttcagtaaagctgtttgtatcttctgaattgccctcgacgcaggtagcccctgtttgtttacatattttgttgggcacctttacgtatatattattatctcacaagtggtcattttaaaagctttctaaaagtagtacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatatttttttgagaagggggagggggggggggggccacatgtaacttcaggtgcc
gi|6 : AGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------AACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGCCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAGGAaattaaaaagggtaaatttgttgaagga
gi|7 : actttttagcagctttaaaatgaaccataacatgtggagactactataattaaatggtacgcaacaatatatgtaaacaaacatgatcacaacgtacaaacaattttactgaaaaaatgtctgtaatcagcgcgtcatgctaatgtagtgctacctgctATCCGATTGGC-TCGTCATTAT-TCGGACTGTCTGGGCTTTGTTT-GGTACCACTAAA-GGGAAATACACGAAAGAACTT--------GGCGAGAGTTTTAAAAAAAACCACAAAAACGATATCGATCTAGA-GTAATTCGAAACATTGTATTTTTTTAAATAATGTCATTAATGGTTATAAGAATAATGCTTCTCTAAAGTATACATGTATAACCTCTTAAAGGATTTAAAGGTTGAAATACTTTTGAGCAATCATACATGTACA-T-
gi|8 : CGAGCCAATCGGACAACGGCGTCTCAGGCAGCGATGTC---A-------AACCTCCCTTTAAGATTGTCA-ATGGATGTA-GA-AGCTTCGAGTCTGGT-------------GAAAT---------AA-TA-----TATAAACGACAAATAATACACTAATAAAA-CTGATGGTGTATGGTTTAGAT-GAAAGAatgcgt
gi|8 : tctgtgatcagcgcgtcatggctttcgtagtgctacttgctTATTTCACCAGACTCGAAGCT-TC-TACATCCATTGACAATCTTAAAGGGAGG-------TT-------T---GACATCGCTGCC--------T--GA-GACGCCGTTGTCCGATTGGC-TCGTCATTATGTCGGACTGTCTCAGGTTT-TTT-TATACC-CTAAA-GGGAAATACACGAAtcattatgtcggactgtctcaggtttttttataccctaaagggaaatacacgaa
gi|9 : tctgtgatcagcgcgtcatggctttcgtagtgctacttgcttctttcatctaaaccatacaccatcagttttattagtgtattatttgtcgtttatatatTAGCGATGTC---AC------AACTTCC-TTTAATGCTGTCA-ATGAATGTA-GA-AGC-TCGGGTCTTGT-------------GAAATAAACAACATAA-TA-----CA-----------------ACTAATAAAA-CTGATGGTATTGGGTTTGGAT-GAAAG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTGCATATTATAATTATACTAATATATGTAGTATCTCACAAGTGGTCATCTTAAAAGCTTGCTAAAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATTTTTTTTTTTGAGAGAAGGGGGAGGGGGGGGGGGGGTTAACTCCAGATGCCTGT
Unaligned ( gi|14 ): AGTGACAAAACATTGATGACTAGTATACTTGGATTCGGTTGGAAGACATATGTAGATCTACAGCTATATTAGCTAAACGAAGTGTTCGTAGAAATTCCTTCGGTAAAGTTGTTAATACATGTACTTCGTCTTGAATCGGGCAGCCACCGGTTCGCTCACAGTATTGTGTTGTGCTCCTTTACGTATCTCACATGATCTGACAGAGAG
Unaligned ( gi|19 ): CCTTTTAAATCGGCCTCGAAACAGGAAGGCCCCCTGTTTGTTTATTTAGTTACATAGATTAGTATCTCCACTATGGCATTTTTAAAAGCTTGTTAAAATTAGAAACTA
Unaligned ( gi|21 ): GATGAAATACAGAAGTAAAACCATATTAGCCAGACGGGATATTCTGAGAAATTCCTTCGGTAAAGTTGTTACATGTAGCTGTGTCCGG
Unaligned ( gi|25 ): ATTAATATATATACATCTCACAAGTGGTCATTTCCAAAGCTTACCGAAAGTAGA
Unaligned ( gi|26 ): TTACTCACAAGTGGTCATTTTTAAAGGCTTGCTAAAAGTAGAA
Alignments
lowQualScore : 1 111111111111111 11111111 22222222 11 1 11 222222 1111 222222222222 77777777777777777777777777777777777777777777777777777777 1 1
lowQualScore : 0 0 8 6 2 8 666666666666666 777 0 66666666 66 4 1 4 4 1 4 5 666 5 44444444 11 0 0 3 55 33 0 3 0 9999 888888 3 4 0 7777 1 6 222222222222 44 3 7 3 3 55555555555555555555555555555555555555555555555555555555 3 0 5
lowQualScore : . . . . . . ............... ... . ........ .. . . . . . . . ... . ........ .. . . . .. .. . . . .... ...... . . . .... . . ............ .. . . . . ........................................................ . . .
lowQualScore : 7 0 0 7 2 0 777777777777777 000 3 11111111 11 4 4 0 0 0 4 7 111 7 22222222 00 8 0 2 00 88 2 2 2 8888 888888 2 2 2 2222 0 7 333333333333 77 6 3 6 6 55555555555555555555555555555555555555555555555555555555 3 0 0
consensus : TATTTCACCGGACCCGA-GCT-TC-TACGTCCATTGACAGCCTTAAA-GGAGG-------TC------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTNT-TCGGACTGTCTCGGCTTT-TTT-GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGATGTCGATCCAGA-GTATTTCGAAAGCTTG--TTTTGATAAATAATTTCATAGATAGTTATAAGAAGAATGCTCATCTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACGTGTGCG-T-TTATTTATGCATGGANGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------GACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAAGA
Reference ( family-4833 ) : TATTTCACCGGACCCGA-GCT-TC-TACGTCCATTGACAGCCTTAAA-GGAGG-------TC------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTNT-TCGGACTGTCTCGGCTTT-TTT-GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGATGTCGATCCAGA-GTATTTCGAAAGCTTG--TTTTGATAAATAATTTCATAGATAGTTATAAGAAGAATGCTCATCTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACGTGTGCG-T-TTATTTATGCATGGANGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------GACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAAGA
gi|1 : TAATCCACCAGGCCCGA-GCT-TC-TACATCCATTGACAGCCTTAAA-GGAGG-------TT------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTAT-TCGGACTGTCTCAGCTTT-TTT-GTTACCACTAAA-GGGAAATACACAAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACCAAAACGATGTCGATCCAGAAGTATT-----------------GATAAATAAATCCATAGATAGTTATAAGAAGAATGCTCATTTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACATGTGCG-TGTTATTTATGCATGCACGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------AACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGCCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAGGA
gi|10 : ---AC------GACCTCC-TTTAAGGCTGTCA-ATGGATGTA-GA-AGC-TTGGGTCTGGTGAAATAAACGACAG-------------AA-TA-----CA-----------------ACAAATAAAA-CTGATGGTATGGGGTTTGGAT-GAAA
gi|11 : tTATTTCACCGGACCCGA-GCTCTCGCGCGCCCATTGAAACTCTTAAA-GGAGG-------TCCATGAGGTCTTGACATCACTTTC--------T--GT-GTTG-CGTTGTCTGAGTGGC-TATTCCATCC-TCCGACGATTTCGGCCTT-TTT-CCAAGCAATAAATAAAAAATATACGAAAGCTCTCAAAGGCGAGGCGCGTGTCTTTAAAAAcgaagcaagtagtattacattagcatgacgtgctgatcacaaaaattctttcaataaagttgttggtacttgtaaatcagcctcgaagcaggtagcccctgttttatttacatattttgttgcgcacctttaca
gi|11 : tgcgATGGAAT--AGCCACTCAGACAACG-CAACACAGAAAGTGATGTCAAGACCTCATGGACCTCC-TTTAAGAGTTTCA-ATGGGCGCGCGAGAGC-TCGGGTCCGGTGAAATAAACGGCAG-------------AA-TA-----CG-----------------ATAAAT-AAAGCTGATGGCATGGGTTTaacggcagaatacgataaataaagctgatggcatgggttt
gi|12 : tgcgtttttaaagacacgcgcctcgcctttgagagctttcgtatattttttatttattgcttggaaaaaggccgaaatcgtcggaggAGA-GGAGG-------TT------AT---GACATCACTTTT--------T--GT-GTCG-CGTTATCTGATTGGC-TCTTTGATCT-TCCGACAATCTCGG
gi|15 : ttcccccagaAGTGGTGTC---AT------GGCCTG----TCAGGCTGTCA-TTGGAAGTA-AA-AGA--CAAGCCAGG-----------------------------A-CA-----CG-----------------AATGAT-GAA-AAGACGGCATGGA--TTGGAT-GAAAGtcctggaggaatatgaatttgccaaaagcgtgtgttgttgaaagcgaaaatgacttaaagaaatgtaaatccagcttattttatagtaaaacgtaactttattgaatttattatttgagaatgataatggatataa
gi|16 : gaACCCGA-GCT-TC-TACATCCATTGACAGCCTTTAA-GGAGGTTGTGACTT------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCTGATTGGCATTGT-ATTTT-Ttacacattcgcagaaatactttagtaaagttgtttatactcatgaatctgtccccaagcgggtacctcctttttgttgac
gi|17 : TGTCAGAAGGATGTAAGA-AGC-TCGCGTCTGGT-------------G-------------AAATAAACGACAGAAATCC----------ACTCAT-AA--CTGATGGTATacatcttacaacctggtatgatgcgtgtaggtaaatattctactaaaatgtg
gi|18 : ttaacgcaACG-CGTTATCCGATTGGC-TCGTCATTTT-CCGGACTGTCTCAGCTTT-TTTTAGTACCACTAAA-GGGAAATACACGAAAGAGCAT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGccgagtgacccctgaatgaagaagcaacgatacactaatccaacttcatgaccgtgctggtca
gi|2 : GTCTTAGA-GGAGG-------TT------GT---GACATCGCTATC--------T--GA-GACG-CGTTATCCGATTGGC-TCATCATTAT-TCGGACTGTCTCAGCTTT-TTT-GGTATCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTGAAGAAA--ACAAAAACGATGTCGATCCAGA-GTTTTTCGAAAGCTTG--TTTTAATAAATAATTTCATAGATAGTTAT---AAAAATGCTCA-------TA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCGTACGTGTGCGTT-TTATTTCTGCATGGACGCAAGCCAATCGGATAATG-CGTCTCAGATAGCGATGTC------------ACCTCT-TTTTAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------GAAATAAACGACATAA-TA-----CA-----------------ACTAATAAAA-CTGATGGTATGGGGT
gi|20 : TTAAA-GGAGG-------TT------GT---GATATCGCTATT--------T--GA-GACG-CGTTGTCCGATTGGC-TCGTCATTTT-TTGGACTGTCTCAGCTTT-TTT-GCTACCACTAAA-
gi|22 : CT-CT-TACGTCTATTTACAACCTCAAAAGGAGG-------TC------GT---GACATCACTTTTTATGTCCAT--GATGTCG-CGATGTTTGATTGGA-TC
gi|23 : TCTCAAATAGCGTTGTC---AC------GACCTCT-TTTAAGACTGCCA-TTGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-
gi|24 : -TACTTCCAATGACAGTCTTGCA-GGAGA-------TC------AT---GATATTGGGATT--------TTTGT-GTCG-CGTTATCTGATTGa
gi|27 : CATTGACAGCATTAAA-GGAAG-------TT------GT---GACATCGCTATatt
gi|3 : -------------G-------------AA-TA-----CA-----------------ACTAAT-AAAACTGATGGTATGGGGTTTGGATGGAAAGA
gi|4 : ctcgggttctggtagtgaaataaacgaca-------------G-------------AA-TA-----CA-----------------ACTCAT-AAAACCGGTGTTATGGGATATGGAT-GAAAGAagctagtagcactacattagcatggacgcgcagatcaacagaaaaaattctttcagtaaagttgttgtaccttgtgaatcgcctcgaagcaggtagccccgtttgttaacatattgttgttgcgcacctttacatatattagtaatctcacaagaggtcattttaaaagcttgctaaaagtagaaactatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatttttttgagaaggggggggggtggtgtaacaacaactgcctgtgttcatatacct
gi|5 : aataaacgacaTACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAA-CGATGTCGATCCAGA-GTATTTCGAAAGCTTG--TTTTGATAAATGATTTCATAGATAGCTATAAGAAGAATGCTCATCT-AAGTA------TATAACCTCTAAAAAGATTTAAAGTTTAGAACACGTTTAAGCAATCA---------------ATTTATGCATAGAAGCGAGCCAATCGGATAACG-CGTCTCAGATATCGATGTC-----------------------AGACTGTCA-ATGGATGTA-GA-AGC-TCGAGTCTGGT-------------G-------------A-------------------------------AAT-AAA-C-GATGagcaagtagcactacattagcatgacgcgctgatcacaaaaattctttcagtaaagctgtttgtatcttctgaattgccctcgacgcaggtagcccctgtttgtttacatattttgttgggcacctttacgtatatattattatctcacaagtggtcattttaaaagctttctaaaagtagtacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatatttttttgagaagggggagggggggggggggccacatgtaacttcaggtgcc
gi|6 : AGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------AACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGCCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAGGAaattaaaaagggtaaatttgttgaagga
gi|7 : actttttagcagctttaaaatgaaccataacatgtggagactactataattaaatggtacgcaacaatatatgtaaacaaacatgatcacaacgtacaaacaattttactgaaaaaatgtctgtaatcagcgcgtcatgctaatgtagtgctacctgctATCCGATTGGC-TCGTCATTAT-TCGGACTGTCTGGGCTTTGTTT-GGTACCACTAAA-GGGAAATACACGAAAGAACTT--------GGCGAGAGTTTTAAAAAAAACCACAAAAACGATATCGATCTAGA-GTAATTCGAAACATTGTATTTTTTTAAATAATGTCATTAATGGTTATAAGAATAATGCTTCTCTAAAGTATACATGTATAACCTCTTAAAGGATTTAAAGGTTGAAATACTTTTGAGCAATCATACATGTACA-T-
gi|8 : CGAGCCAATCGGACAACGGCGTCTCAGGCAGCGATGTC---A-------AACCTCCCTTTAAGATTGTCA-ATGGATGTA-GA-AGCTTCGAGTCTGGT-------------GAAAT---------AA-TA-----TATAAACGACAAATAATACACTAATAAAA-CTGATGGTGTATGGTTTAGAT-GAAAGAatgcgt
gi|8 : tctgtgatcagcgcgtcatggctttcgtagtgctacttgctTATTTCACCAGACTCGAAGCT-TC-TACATCCATTGACAATCTTAAAGGGAGG-------TT-------T---GACATCGCTGCC--------T--GA-GACGCCGTTGTCCGATTGGC-TCGTCATTATGTCGGACTGTCTCAGGTTT-TTT-TATACC-CTAAA-GGGAAATACACGAAtcattatgtcggactgtctcaggtttttttataccctaaagggaaatacacgaa
gi|9 : tctgtgatcagcgcgtcatggctttcgtagtgctacttgcttctttcatctaaaccatacaccatcagttttattagtgtattatttgtcgtttatatatTAGCGATGTC---AC------AACTTCC-TTTAATGCTGTCA-ATGAATGTA-GA-AGC-TCGGGTCTTGT-------------GAAATAAACAACATAA-TA-----CA-----------------ACTAATAAAA-CTGATGGTATTGGGTTTGGAT-GAAAG
blockSeqs : A C G G A TTGTGACTT CTT TATGTCCA TT T T C A C G G TAG T AAAGGCGA CC . T GC TA A TCTA TACATG T G GTT A G AAGACCTCATGG CC G C G T GAAATAATATATAAACGACAAATAATAC A G G
blockSeqs : . . . A G TCCATGAG . . . . T . . C . . CC . . . . T GC . A TCT . T A AT C . ACG C . A . . GAAATAAACGACAGAATACA A A .
blockSeqs : . . . G . TT . . . . A . . T . . GG . . . . T CA . . . . . . . A . ATG C . . . . GAAATAAACGGCAGAATACG A A .
blockSeqs : . . T . TT . . . . A . . T . . GC . . . . ACG T . . . . GAAATAAACGACAGAAATCC A . .
blockSeqs : . A . TT . . . . A . . A . . GG . . . ACA T . . . . GAAATAAACGACATAATACA . . .
blockSeqs : . TC . . . . A . . T . . TA . ACA C . . . . GAAATAAACAACATAATACA . . .
blockSeqs : . TC . . . . T . . A . AA C . . . . GAATACA . . .
blockSeqs : . TT . . . . T . . A . . . . . . . GAATACA . .
blockSeqs : . TT . A . . . . . . . . GAATACA . .
blockSeqs : . . . . ACACG . .
blockSeqs : GA . .
blockSeqCons :
originalCons : TATTTCACCGGACCCGA-GCT-TC-TACGTCCATTGACAGCCTTAAA-GGAGG-------TC------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTNT-TCGGACTGTCTCGGCTTT-TTT-GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGATGTCGATCCAGA-GTATTTCGAAAGCTTG--TTTTGATAAATAATTTCATAGATAGTTATAAGAAGAATGCTCATCTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACGTGTGCG-T-TTATTTATGCATGGANGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------GACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAAGA
finalCons : TATTTCACCGGACCCGA-GCT-TC-TACGTCCATTGACAGCCTTAAA-GGAGG-------TC------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTNT-TCGGACTGTCTCGGCTTT-TTT-GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGATGTCGATCCAGA-GTATTTCGAAAGCTTG--TTTTGATAAATAATTTCATAGATAGTTATAAGAAGAATGCTCATCTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACGTGTGCG-T-TTATTTATGCATGGANGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------GACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAAGA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTGCATATTATAATTATACTAATATATGTAGTATCTCACAAGTGGTCATCTTAAAAGCTTGCTAAAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATTTTTTTTTTTGAGAGAAGGGGGAGGGGGGGGGGGGGTTAACTCCAGATGCCTGT
Unaligned ( gi|14 ): AGTGACAAAACATTGATGACTAGTATACTTGGATTCGGTTGGAAGACATATGTAGATCTACAGCTATATTAGCTAAACGAAGTGTTCGTAGAAATTCCTTCGGTAAAGTTGTTAATACATGTACTTCGTCTTGAATCGGGCAGCCACCGGTTCGCTCACAGTATTGTGTTGTGCTCCTTTACGTATCTCACATGATCTGACAGAGAG
Unaligned ( gi|19 ): CCTTTTAAATCGGCCTCGAAACAGGAAGGCCCCCTGTTTGTTTATTTAGTTACATAGATTAGTATCTCCACTATGGCATTTTTAAAAGCTTGTTAAAATTAGAAACTA
Unaligned ( gi|21 ): GATGAAATACAGAAGTAAAACCATATTAGCCAGACGGGATATTCTGAGAAATTCCTTCGGTAAAGTTGTTACATGTAGCTGTGTCCGG
Unaligned ( gi|25 ): ATTAATATATATACATCTCACAAGTGGTCATTTCCAAAGCTTACCGAAAGTAGA
Unaligned ( gi|26 ): TTACTCACAAGTGGTCATTTTTAAAGGCTTGCTAAAAGTAGAA
Alignments
lowQualScore : 1 111111111111111 11111111 22222222 11 1 11 222222 1111 222222222222 77777777777777777777777777777777777777777777777777777777 1 1
lowQualScore : 0 0 8 6 2 8 666666666666666 777 0 66666666 66 4 1 4 4 1 4 5 666 5 44444444 11 0 0 3 55 33 0 3 0 9999 888888 3 4 0 7777 1 6 222222222222 44 3 7 3 3 55555555555555555555555555555555555555555555555555555555 3 0 5
lowQualScore : . . . . . . ............... ... . ........ .. . . . . . . . ... . ........ .. . . . .. .. . . . .... ...... . . . .... . . ............ .. . . . . ........................................................ . . .
lowQualScore : 7 0 0 7 2 0 777777777777777 000 3 11111111 11 4 4 0 0 0 4 7 111 7 22222222 00 8 0 2 00 88 2 2 2 8888 888888 2 2 2 2222 0 7 333333333333 77 6 3 6 6 55555555555555555555555555555555555555555555555555555555 3 0 0
consensus : TATTTCACCGGACCCGA-GCT-TC-TACGTCCATTGACAGCCTTAAA-GGAGG-------TC------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTNT-TCGGACTGTCTCGGCTTT-TTT-GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGATGTCGATCCAGA-GTATTTCGAAAGCTTG--TTTTGATAAATAATTTCATAGATAGTTATAAGAAGAATGCTCATCTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACGTGTGCG-T-TTATTTATGCATGGANGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------GACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAAGA
Reference ( family-4833 ) : TATTTCACCGGACCCGA-GCT-TC-TACGTCCATTGACAGCCTTAAA-GGAGG-------TC------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTNT-TCGGACTGTCTCGGCTTT-TTT-GNTACCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGATGTCGATCCAGA-GTATTTCGAAAGCTTG--TTTTGATAAATAATTTCATAGATAGTTATAAGAAGAATGCTCATCTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACGTGTGCG-T-TTATTTATGCATGGANGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------GACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAAGA
gi|1 : TAATCCACCAGGCCCGA-GCT-TC-TACATCCATTGACAGCCTTAAA-GGAGG-------TT------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCCGATTGGC-TCGTCATTAT-TCGGACTGTCTCAGCTTT-TTT-GTTACCACTAAA-GGGAAATACACAAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACCAAAACGATGTCGATCCAGAAGTATT-----------------GATAAATAAATCCATAGATAGTTATAAGAAGAATGCTCATTTAAAGTA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCATACATGTGCG-TGTTATTTATGCATGCACGCGAGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------AACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGCCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAGGA
gi|10 : ---AC------GACCTCC-TTTAAGGCTGTCA-ATGGATGTA-GA-AGC-TTGGGTCTGGTGAAATAAACGACAG-------------AA-TA-----CA-----------------ACAAATAAAA-CTGATGGTATGGGGTTTGGAT-GAAA
gi|11 : tTATTTCACCGGACCCGA-GCTCTCGCGCGCCCATTGAAACTCTTAAA-GGAGG-------TCCATGAGGTCTTGACATCACTTTC--------T--GT-GTTG-CGTTGTCTGAGTGGC-TATTCCATCC-TCCGACGATTTCGGCCTT-TTT-CCAAGCAATAAATAAAAAATATACGAAAGCTCTCAAAGGCGAGGCGCGTGTCTTTAAAAAcgaagcaagtagtattacattagcatgacgtgctgatcacaaaaattctttcaataaagttgttggtacttgtaaatcagcctcgaagcaggtagcccctgttttatttacatattttgttgcgcacctttaca
gi|11 : tgcgATGGAAT--AGCCACTCAGACAACG-CAACACAGAAAGTGATGTCAAGACCTCATGGACCTCC-TTTAAGAGTTTCA-ATGGGCGCGCGAGAGC-TCGGGTCCGGTGAAATAAACGGCAG-------------AA-TA-----CG-----------------ATAAAT-AAAGCTGATGGCATGGGTTTaacggcagaatacgataaataaagctgatggcatgggttt
gi|12 : tgcgtttttaaagacacgcgcctcgcctttgagagctttcgtatattttttatttattgcttggaaaaaggccgaaatcgtcggaggAGA-GGAGG-------TT------AT---GACATCACTTTT--------T--GT-GTCG-CGTTATCTGATTGGC-TCTTTGATCT-TCCGACAATCTCGG
gi|15 : ttcccccagaAGTGGTGTC---AT------GGCCTG----TCAGGCTGTCA-TTGGAAGTA-AA-AGA--CAAGCCAGG-----------------------------A-CA-----CG-----------------AATGAT-GAA-AAGACGGCATGGA--TTGGAT-GAAAGtcctggaggaatatgaatttgccaaaagcgtgtgttgttgaaagcgaaaatgacttaaagaaatgtaaatccagcttattttatagtaaaacgtaactttattgaatttattatttgagaatgataatggatataa
gi|16 : gaACCCGA-GCT-TC-TACATCCATTGACAGCCTTTAA-GGAGGTTGTGACTT------GT---GACATCGCTATT--------T--GA-GACG-CGTTATCTGATTGGCATTGT-ATTTT-Ttacacattcgcagaaatactttagtaaagttgtttatactcatgaatctgtccccaagcgggtacctcctttttgttgac
gi|17 : TGTCAGAAGGATGTAAGA-AGC-TCGCGTCTGGT-------------G-------------AAATAAACGACAGAAATCC----------ACTCAT-AA--CTGATGGTATacatcttacaacctggtatgatgcgtgtaggtaaatattctactaaaatgtg
gi|18 : ttaacgcaACG-CGTTATCCGATTGGC-TCGTCATTTT-CCGGACTGTCTCAGCTTT-TTTTAGTACCACTAAA-GGGAAATACACGAAAGAGCAT--------GGCGCGAGTTTTTAAAGAAA--ACAAAAACGccgagtgacccctgaatgaagaagcaacgatacactaatccaacttcatgaccgtgctggtca
gi|2 : GTCTTAGA-GGAGG-------TT------GT---GACATCGCTATC--------T--GA-GACG-CGTTATCCGATTGGC-TCATCATTAT-TCGGACTGTCTCAGCTTT-TTT-GGTATCACTAAA-GGGAAATACACGAAAGAGCTT--------GGCGCGAGTTTTTGAAGAAA--ACAAAAACGATGTCGATCCAGA-GTTTTTCGAAAGCTTG--TTTTAATAAATAATTTCATAGATAGTTAT---AAAAATGCTCA-------TA------TATAACCTCTAAAAAGATTTAAAGTTTGGAACACGTTTAAGCAATCGTACGTGTGCGTT-TTATTTCTGCATGGACGCAAGCCAATCGGATAATG-CGTCTCAGATAGCGATGTC------------ACCTCT-TTTTAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGTCTGGT-------------GAAATAAACGACATAA-TA-----CA-----------------ACTAATAAAA-CTGATGGTATGGGGT
gi|20 : TTAAA-GGAGG-------TT------GT---GATATCGCTATT--------T--GA-GACG-CGTTGTCCGATTGGC-TCGTCATTTT-TTGGACTGTCTCAGCTTT-TTT-GCTACCACTAAA-
gi|22 : CT-CT-TACGTCTATTTACAACCTCAAAAGGAGG-------TC------GT---GACATCACTTTTTATGTCCAT--GATGTCG-CGATGTTTGATTGGA-TC
gi|23 : TCTCAAATAGCGTTGTC---AC------GACCTCT-TTTAAGACTGCCA-TTGGATGTA-GA-AGC-TCGGGTCTGGT-------------G-------------AA-
gi|24 : -TACTTCCAATGACAGTCTTGCA-GGAGA-------TC------AT---GATATTGGGATT--------TTTGT-GTCG-CGTTATCTGATTGa
gi|27 : CATTGACAGCATTAAA-GGAAG-------TT------GT---GACATCGCTATatt
gi|3 : -------------G-------------AA-TA-----CA-----------------ACTAAT-AAAACTGATGGTATGGGGTTTGGATGGAAAGA
gi|4 : ctcgggttctggtagtgaaataaacgaca-------------G-------------AA-TA-----CA-----------------ACTCAT-AAAACCGGTGTTATGGGATATGGAT-GAAAGAagctagtagcactacattagcatggacgcgcagatcaacagaaaaaattctttcagtaaagttgttgtaccttgtgaatcgcctcgaagcaggtagccccgtttgttaacatattgttgttgcgcacctttacatatattagtaatctcacaagaggtcattttaaaagcttgctaaaagtagaaactatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatttttttgagaaggggggggggtggtgtaacaacaactgcctgtgttcatatacct
gi|5 : aataaacgacaTACACGAAAGAGCTT--------GGCGCGAGTTTTTAAAGAAA--ACAAAA-CGATGTCGATCCAGA-GTATTTCGAAAGCTTG--TTTTGATAAATGATTTCATAGATAGCTATAAGAAGAATGCTCATCT-AAGTA------TATAACCTCTAAAAAGATTTAAAGTTTAGAACACGTTTAAGCAATCA---------------ATTTATGCATAGAAGCGAGCCAATCGGATAACG-CGTCTCAGATATCGATGTC-----------------------AGACTGTCA-ATGGATGTA-GA-AGC-TCGAGTCTGGT-------------G-------------A-------------------------------AAT-AAA-C-GATGagcaagtagcactacattagcatgacgcgctgatcacaaaaattctttcagtaaagctgtttgtatcttctgaattgccctcgacgcaggtagcccctgtttgtttacatattttgttgggcacctttacgtatatattattatctcacaagtggtcattttaaaagctttctaaaagtagtacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatatttttttgagaagggggagggggggggggggccacatgtaacttcaggtgcc
gi|6 : AGCCAATCGGATAACG-CGTCTCAGATAGCGATGTC---AC------AACCTCC-TTTAAGACTGTCA-ATGGATGTA-GA-AGC-TCGGGCCTGGT-------------G-------------AA-TA-----CA-----------------ACTAAT-AAA-CTGATGGTATGGGGTTTGGAT-GAAGGAaattaaaaagggtaaatttgttgaagga
gi|7 : actttttagcagctttaaaatgaaccataacatgtggagactactataattaaatggtacgcaacaatatatgtaaacaaacatgatcacaacgtacaaacaattttactgaaaaaatgtctgtaatcagcgcgtcatgctaatgtagtgctacctgctATCCGATTGGC-TCGTCATTAT-TCGGACTGTCTGGGCTTTGTTT-GGTACCACTAAA-GGGAAATACACGAAAGAACTT--------GGCGAGAGTTTTAAAAAAAACCACAAAAACGATATCGATCTAGA-GTAATTCGAAACATTGTATTTTTTTAAATAATGTCATTAATGGTTATAAGAATAATGCTTCTCTAAAGTATACATGTATAACCTCTTAAAGGATTTAAAGGTTGAAATACTTTTGAGCAATCATACATGTACA-T-
gi|8 : CGAGCCAATCGGACAACGGCGTCTCAGGCAGCGATGTC---A-------AACCTCCCTTTAAGATTGTCA-ATGGATGTA-GA-AGCTTCGAGTCTGGT-------------GAAAT---------AA-TA-----TATAAACGACAAATAATACACTAATAAAA-CTGATGGTGTATGGTTTAGAT-GAAAGAatgcgt
gi|8 : tctgtgatcagcgcgtcatggctttcgtagtgctacttgctTATTTCACCAGACTCGAAGCT-TC-TACATCCATTGACAATCTTAAAGGGAGG-------TT-------T---GACATCGCTGCC--------T--GA-GACGCCGTTGTCCGATTGGC-TCGTCATTATGTCGGACTGTCTCAGGTTT-TTT-TATACC-CTAAA-GGGAAATACACGAAtcattatgtcggactgtctcaggtttttttataccctaaagggaaatacacgaa
gi|9 : tctgtgatcagcgcgtcatggctttcgtagtgctacttgcttctttcatctaaaccatacaccatcagttttattagtgtattatttgtcgtttatatatTAGCGATGTC---AC------AACTTCC-TTTAATGCTGTCA-ATGAATGTA-GA-AGC-TCGGGTCTTGT-------------GAAATAAACAACATAA-TA-----CA-----------------ACTAATAAAA-CTGATGGTATTGGGTTTGGAT-GAAAG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTGCATATTATAATTATACTAATATATGTAGTATCTCACAAGTGGTCATCTTAAAAGCTTGCTAAAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATATTTTTTTTTTTGAGAGAAGGGGGAGGGGGGGGGGGGGTTAACTCCAGATGCCTGT
Unaligned ( gi|14 ): AGTGACAAAACATTGATGACTAGTATACTTGGATTCGGTTGGAAGACATATGTAGATCTACAGCTATATTAGCTAAACGAAGTGTTCGTAGAAATTCCTTCGGTAAAGTTGTTAATACATGTACTTCGTCTTGAATCGGGCAGCCACCGGTTCGCTCACAGTATTGTGTTGTGCTCCTTTACGTATCTCACATGATCTGACAGAGAG
Unaligned ( gi|19 ): CCTTTTAAATCGGCCTCGAAACAGGAAGGCCCCCTGTTTGTTTATTTAGTTACATAGATTAGTATCTCCACTATGGCATTTTTAAAAGCTTGTTAAAATTAGAAACTA
Unaligned ( gi|21 ): GATGAAATACAGAAGTAAAACCATATTAGCCAGACGGGATATTCTGAGAAATTCCTTCGGTAAAGTTGTTACATGTAGCTGTGTCCGG
Unaligned ( gi|25 ): ATTAATATATATACATCTCACAAGTGGTCATTTCCAAAGCTTACCGAAAGTAGA
Unaligned ( gi|26 ): TTACTCACAAGTGGTCATTTTTAAAGGCTTGCTAAAAGTAGAA