lowQualScore : 11111111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 1 11 11 00000000 1111 1111111 2 1111111 22222222222222222222222222222222222 111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 7 44 77 6 33333333 5 5 7 1111 66 3333333 4 0 3 1111111 0 9999 44444444444444444444444444444444444 9 3 9 000 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : . .. .. . ........ . . . .... .. ....... . . . ....... . .... ................................... . . . ... . ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
lowQualScore : 0 33 77 0 00000000 0 0 8 2222 99 0000000 9 0 6 8888888 2 0000 66666666666666666666666666666666666 1 6 4 000 7 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
consensus : AAATCAAATTTC-ATGTTAAACA--------CATGTATT-GTG-TCACAN---T--TGCAAA-------ATGATTGCGGT-TGTTTTAA-TTTC-------GCGGAAAAT---TCCCCG-ACC-GCGAACAT--G----G-C---------GAAATTAAAACAA-CCGCAATCATTTC---CCCA------CT----C----ACAG---------TATACGTGT---TTAAAT---T-ATTATCTT----A-CA-ACAAATATTTCTAC-TTANTT--GNAATATAA-CC---AA-----ATAGTT---TA--AATT--ATTT--ATAAA---TT-AGTNAATTNTCAG---AA--TTAAT--CAAG-----TTA--AA--AT--TTTACAGAT-ATATTTACAGTAA-TTA-T-GTTAA-AAATA----TATTCAACTCANCAAA-AT-TATGGACT-CTAG------NCCTT------TT--GATGTTTTA-AT-----TN-TG-----CG-TGTTGT-----G------CTAAT------------TA--A-T----------AGAATTAAA-CATN-C--------------------AA-ATTGTTAG-C-ATAAGAAACCT--GGC-TAGATAACTNA---AAT------CC--A--AAT---------------GAAT-----------------A--------------ACTT--AAANTCAAACA---TA-CC--AAATTGCT-GAA--------------T-C---A-AT---A------AAAN----CC--------------TAATAC--TCCGA-CTCC-AAACCTCG-CT-AGTCA------GCGGCACGGA---ATAAAAAGTGACCAACACCCC--CA------------CGAAAAACTAGTC-AAAC----------CTGT--CT----A-CTGG-TCAAA-GT-CAC-GTGT-CA---AGTCT-GCGC------CAAT--CGCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
Reference ( gi|2 ) : AATTCAAATTTT-ATGACAAATATATACATACATGTATT-GTG-TCATAC---T--TGCAAA-------ATGATTGCAGTGTGTTTTAA-TTTC-------GCGGAAAAT---TCCCC--ACC-GCGAACAT--G----G-C---------AAAATTAAAGCAA-CCGCAATCGTTTC---CCCA------TT----T----AC-----------TATACATGT---TTAAAT---T-ATTATCTT----AACA-ACAAATATTTCTAC-TTATTTTCGCAATATAA------AA-----ACAGTT---TA--AAC---ACTT--ATAAA---TTTAGTTAATTATTAG---AA--TTAAT--CAAG-----TTA--AA--ATCTTTTACAGTTTGTATTTACATTAA-TTA-T-GTTAA-AAATACATGTATTCATCTTACCAAA-AT-TATGAACC-CTAG-----TTCCTT------TT--GATATTTTACATCGTAATG-TG-----TG-TGTTGT-----G------CTAAT------------TA--A-T----------AGAATTAAA-CATG-C--------------------AA-ATTGTTAA-CTATAAGAAACCT--GGC-TAGA-----AA---AAT------CT--A--AAT---------------GAAT-----------------A--------------ACTT--AAAGTCAAGCA---TA-CC--AAAT-GCT-GAA--------------T-C---A-AT---A------AAAC----CC--------------TAATACAGTCCGATCTTC-AGACTTCA-CT-ATTCA------ATGACACAGG---A----AAGTAACTA-CACCCT--CA------------CGAAAA-----------C----------CTGT--CC----A-CTGG-TC-AA-GT-CAC-GTGT-CA---CGTCT-GAACAAG---CAAT--AGCTCA-ACCACCATAACTTTGTGTGGGAAAATA
gi|8 : AAATCAAATTTTTATATCAAACATAT-----CATGTATT-GTG-TCACAG---T--TGAAAA-------ATGATTAGGGT-TGTTTTAA-TTTA-------GCGGAAAAT---TCCCCG-ACC-GCAA--AT--A----G-T---------GAAATTAAA--AA-CAGC
gi|11 : aggatgattttaggtggaacatactgtaagtggttataagtttgcggtgttaaaagtttgtagcttttaatattggtctaattacggtgattttattttcgtggAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCAGAG---T--TGCAAA-------ATGATTGCAGT-TGTTTTAA-TTCC-------GCg
gi|9 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaatgcggtggttttaatttcacacAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCAGAG---T--TGCAAA-------ATGATTGCAGT-TGTTTTAA-TTCC-------GCa
gi|10 : gtttttattttcccagtgctaaaattcgcgattttactatatttggatctaaatgcggtggttttaatttcacacATACATGTATA-CTG---GTAC---TACTGTAAATGGGGAAATTAATGTGGTG-GTTTTAA-ATTC-------GCT--ATGT---TCGCA--GTC-G---GCAT--TTTCCA-C---------GAATTTAAAACAA-CCGCAATCATTTaa
gi|14 : acctattgtgttacacttgcaCATGTATT-GCG-TCACAG---T--TGCAAA-------ATGATTGCGGT-TGTTTTAA-TTTCCTCATTTACAGTACAT---GACCC--A------AACTT--G----G-C---------AAAATccattctcttagatt
gi|7 : TGTATTAGTGGTCAAACAGCT--TGCAAA--------TGATTGCGGGTTGTTTTAATTTTC-------GTGGAAAAGACATCCCCGAACTGGCGAAT-T--G----GCC---------GAAATTAAAACA---CGCAATC-TTTCCCGCCCA------TT----T----ACAG---------TGGACTTGC---TCAAGTGGAT-AGTGTTC----------GCAAATA-TTCT---TTAGTT--GGAGCATAAGCCTGTAACTTATACAGTC---TAACAGT---ATTTCAATAAGTCTTTCAGATAATAATCAA---AAATTTCAT--C-AG-----TTA--A
gi|18 : GTATT-GTG-TCACAC---T--TGC-AA-------ATGA-TGCGGTCTGTTTTAA-TTTC-------G
gi|10 : TATT-GTG-TTACAC---T--TGCAAA-------ATGATTGCGGT-TGTTTTAA-ATTC-------GTGGAAAAT---GCCG---ACT-GCGAACAT--A----G-C---------GAATTTAAAACCA-CCACATTAATTTC---CCCA------TT----T----ACAGTAGTACCAGTATACATGT-------ATC--C-ATTCTCTT----A
gi|12 : accAA-------ATGGTAGCAGTG-GTTTTAA-TTTC-------GCgatt
gi|7 : tgttttaatttcgtggaaaaatccccgaccacgaacataAA-------A-GATTGC---GTGTTTTAA-TTTC-------G--GCCAAT---TCGCC--AGT-TCGGGGAT--G----T-CTTTTCCACGAAAATTAAAACAACCCGCAATCATTTccccattcatttttactttcctgtttactttatagaatgaacatttgttatt
gi|12 : tgtattagtggtcaaacagcttgcTGTTTTAA-TTTC-------GTGGAAAAA---TCCCCG-ACC-ACGAACAT--A----G-C---------GAAATTAAAACCA-CTGCTACCATTTC---CCCATTCATTTT----T----AC-----------T-TTCCTGT---TTACTT---T-ATcccgcccatttacagtggacttgctcaagtggatagtgttcgcaaatattctttagttggagcataagcctgtaacttatacagtctaacagtatttcaataagtctttcagataataatcaaaaatttcatcagttaa
gi|15 : AAAAT---ACCCG--ACA-GTGAACATATG----G-C---------GCAATTAAAACCC-CCGCAACCATTTC---CTCA------TT----T----ACAT---------TATATATAG---TTATAT---T-Aagaatgaacatttgttatt
gi|14 : aAT--G----A-G---------GAAATTAAAACAA-CCGCAATCATTT
gi|8 : catgtattgcgtcacagttgca----G-C---------TAAATTAAAACAA-CCCTAATCATTTT---TCAA------CTGTGAC----AC-----------AATACATGttacagtacatgacccaaacttggcaaaat
gi|11 : aggatgattttaggtggaacatactgtaagtggttataagtttgcggtgttaaaagtttgtagcttttaatattggtctaattacggtgattttattttcgtggaaatcaaatttttatatcaaacatat----G-C---------GGAATTAAAACAA-CTGCAATCATTTT---GCAA------CT----CTGAAACAA---------TATATGTGT---TTAAggaaaattccccgaccgcaaatagtgaaattaaaaacagcg
gi|9 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaatgcggtggttttaatttcacacaaatcaaatttcatg----G-C---------GGAATTAAAACAA-CTGCAATCATTTT---GCAA------CT----CTGAAACAA---------TATATGTGT---TTAAa
gi|1 : gtttttattttcccagtgctaaaattcgcgattttactatatttggatctaaatgcggtggttttaatttcacacaaatcaaatttcatgATACATATGCGTTGAGT---TGAATAT-TT----ATTA-ACAA-TACTT-TAC-TGA------AAATATAATTTGT-AA-----ATAATTATCTA--AACT--ATCT--AGACA---TTAAGTAAACTA--AA---GA--TTAAT--TAAT-----TTACAAA--ATATTTT------------TACAGTAA-TTAAT-GTTAA-AA-------TATTCACATCACCAAA-AT-TATGGACT-CTAG-----GCCCTT------TT--TATTTTTTAAAT-GAACTT-TGACACTTGTTATTGC-----GATTCGTTTAGT------------TGCTA-T----------AAATCTAAA-CATA-CAAAGAAATCATAAACATGCAAA-ATTGTTAG-C-A-AAGAAACCTTCGGC-TAGA-----TA---A--------CT--A--AAT---------------GAAT--------------------------------ATTTAAAAAATGAA--A---TA-CCAAAAAG-AAT-AAA--------------T-T---A-AT---C------AAACATTACCAAATTGTAGAAGATTAATAAACTCCAAACTCCAAAACCTCG-CTCAGTCAGGTAGCACGGCACCAT---A----AAGTGAC-A-CACCCCAACAGAAAAACTTAGTCAAAAA-----------CA---------CTGC--TCTATAA-CTGG-TC-AA-GT-CAG-ATGT-CA---AGTCT-GCGC------CAATCGAGCTC--ACCA-CA-AA--TTGC-CGGGAAAATAaa
gi|5 : cAAT---T-ATTACCTTCATAAACATACATGTATTTCTAC-GTATTTTCGCAATATAG------AA-----ATAGCT---TA--AATTTGATTT--ATAA-------AGTGA--TCTCCG---AA--TTAAT--CAA------TTA----------TTTACAGATGATATTTACG-GAA-CTA-A-GTTAA-AAA------TATTCAACTTACCAAA-AT-TATG---C-CT-----------TT------TT--GATG-TTTACATCTT--TA-TA-----CA-TGTTGT-----G------CTAAT------------TA--C-T-------------ATTATA---------------------------GA-ATTGTTAG-CTATAATAAACC----AC-TA-A-----TG---AGT------CTTCA--AATGAATACCATTTTGAAGAAT-----------------A--------------ACTT--AAAGTCAAACA---TACCC--AAAT-ACT-GAA--------------TAC---ATATTAAA------AAAT----CC--------------TGAC----TC----CTTT-AAATT-----T-ATTCA------GTGGCACGGGACAA----AAGTAA---------T--C---------------------------------------------------------GG-TCAAA-GT-CAC-GTGT-CA---C-TCT-AAAT------CAAT--CGCTCA---CA--ATAATTTTG-GCGGGAAAATAgtttaattattgaagaaataaagaaaaaaatcaacaacggacgctttaaatagtttcctaattaaggatattttttggttaaaactttttattaa
gi|3 : AATATTTTAACATTAATT----ACTGTAA------AA-----ATA--T---T-----------TT--GTAAA---TT-AATTAATCTTTAGTTTAC--TTAATGTCTAGATAGTTTA--GATAATTATTTACAAATTATATTTTCAGTAAAGTA-TTGTTAATAAATA------TTCAACTCAACGCATATGTATGGATTTCTAGGCTTGTTTTTTAAATGATT--GATGTTTT---------TGCTG-----TG-TATCGT-----G------CTAATAATATCTATCTACA--AGT----------AGAATTCAA-CATT-C--------------------AA-AT-GTTAG-C-ATA-GAAACCT--GGC-TATATAACTAATGGAATTTT---CC--ATTAAT---------------GAATTAGCCACAGAATAATCAA--------------ACTA--TAATTCGAATACATTA-CC--AAATTGCT-GAA--------------------G-AT---A--------------TT--------------TTATAC--TCCAATCT---AAACCTCGTCT-CGTCA------GTAGCACGGA---ATAA-AAGTGACCAATACCCC--AA------------TGAAAAACTAGTCGAAAC----------CTGTTTCT----ATCTGG-TC-AA-AT-CACGGTGT-CAGATTGTCT-G--C--GTTCCAAT--CGGTC--ACCACAATA--TTCG-GCGGGAAAATAg
gi|17 : TTACATTAA-TTA-T-GTTTA-AAATA------TTCAACTTAACAAA-AT-TATGGACT-CTAG------GCCTT------TTACGATGTTTTAatagataatttatgggaaattataaaatgaaattaactcaacacgtgacgcttttaaatagtttctaatttaagatatttgtaaaactttttataaa
gi|4 : -----TG-CGTTGTACGTGG------CTAAT------------AA--A-TCTACTACAGAGGAATTAAAACATGGC--------------------AACATTGTTAGGCAATGGAAAACCT--GGCATAGATAACTAA---GATGAATTTCC--A--AAT---------------GAAT-----------------ACCAAAAGATATAAAACTT--AAA--TAAACA---TA-CC--AAATTGCTTGAAGATATGTTTTAACTT-CCAAA-AT---ACACTGAAAAA----CC--------------TAATACCG--CG----------CTTCG------TCA------GCGGCACGGA---ATAAAAAGTGACCAACACCCC--AA------------GAAAAA-----------CTAGAGTCAAACTGT--CT----A-CTGGCTC-AAAGTACAC-GTGTGCA---AGTCTTGCGC------CAAT--CGCCTGCACCACAATGA-TTTG-GCGGGAAAATA
gi|6 : TCA------GCGGCACGGA---ATATAAAGTGACCA-CACCC---CA------------AGAAAAACTAGTCCAAAC----------CTGT--CT----A-CTGG-TCAAA-GT-CAC-GTGT-CA---AGTCT-GCACCA-----AAT---CCTCA-ACCACAATA---TTG-GC-GGAAAATAagatattttaaaaacgcgaaaataaagaaaaaaattctgaacacggacgctttaattatattttctaattaaagaatatttgtaaaacct
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ATGGACTCTAGGCTTTTTTTAAACGATCGATGTTTTAATACTTTGCGTGTACGTACTAATAAATCTACAAATTGCTTGAAGATATTTAACTCCAA
Unaligned ( gi|16 ): AAAATAAAGAAAAAAACTCAACACGGACGCTTTTAAATATTTTCTAATTAAAGATATTTGTAAAACTTTTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 44444444 1111111 111111 11 111 11 111 111 5555555555 3333 6666666666666 111111 1111 22222222222222 11111111 55555555555 22222 111 2222222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 1 111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 1 33333333333333333333333333333333333333333333333333333333333333333333333333333 222222 111 22222222222222 1 2222 11 111 1111 111111 222 222
lowQualScore : 0 33333333 5 5 66 66 5 8 4 4444444 777777 77 1 77 5 11 3 444 6 2 00 8 4 777 0 0 3 444 7 0 7777777777 3 3 3 0 8 11 3333 9999999999999 666666 8 3333 0 00000000000000 33333333 999 22222222222 8 44444 0 8 222 1111111111 1 1 8 8 1 6 8888 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111111 6 6 8 6 88 3 111 8 5 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 555 444 8 3 3 00000000000000000000000000000000000000000000000000000000000000000000000000000 77 000000 555 2 00000000000000 3 2222 55 1 888 6 3 3 6 77 6 3333 6 333333 6 99 333 222 6
lowQualScore : . ........ . . .. .. . . . ....... ...... .. . .. . .. . ... . . .. . . ... . . . ... . . .......... . . . . . .. .... ............. ...... . .... . .............. ........ ... ........... . ..... . . ... .......... . . . . . . .... .................................................................................................................................. ...... . . . . .. . ... . . . .............................................................................................. ... ... . . . ............................................................................. .. ...... ... . .............. . .... .. . ... . . . . .. . .... . ...... . .. ... ... .
lowQualScore : 0 00000000 0 0 99 00 0 9 4 4444444 666666 99 7 99 7 00 8 000 0 8 88 0 2 555 8 8 8 000 0 2 0000000000 8 8 2 8 0 88 6666 4444444444444 000000 0 6666 8 22222222222222 00000000 888 00000000000 0 44444 8 0 222 4444444444 0 0 0 0 0 7 5555 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 777777 7 7 0 0 88 8 888 0 0 8 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 444 000 0 5 3 00000000000000000000000000000000000000000000000000000000000000000000000000000 33 555555 555 5 22222222222222 3 5555 88 7 333 7 2 2 7 77 7 2222 7 555555 7 22 888 333 7
consensus : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTC---CCCATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----ACA-ACAAATATTTCTAC-TTANTTTCGCAATATAA---TGTAA-----ATAGTT---T--AA-ATT--ATTTA-----TAAA-TTA-GTNAATTNTCAGA-ATTAATCAAGTTAAAA--TTTTA-CAG-A-T-ATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTTACCAAA-AT-TATGGACT-CTA-G-NCC--------T----------T--TT----------GA-TG--TTTTA-A------T-----TNT-GCG---TGT-C--GT-GCTA---AT------------TAA---T----------A-----GAAT--TAAA-CATG-CAA-A-TTGTTAG-CTA-TAAGAAACCT--GGC-TAGATAACTAA---A---------------------AT------CCA--AATG---------------AAT-----------------A--------------ACTTAAANTCAAACA---T-ACCAAATTGCT-GAA--------------T-C---G-AT---A------AAATCCTAA---TAC--TCCGA---CTTTAAACCTCG-CT-A-GTCAG-CGGCACGGAAT-A-AAAGTGACCAACACCCCAAC-GAAAAACT--AGTC-AAA--C-CTG--TCTA---CTGG-TCAAAGT-CAC-GTGT-CAA---GTC-TGCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
Reference ( family-477 ) : AAATCAAATTTC-ATGTTAAACA--------CATGTATT-GTG-TCA--CAN-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACAACCGCAATCATTTC---CCCACTCACAGTA-TACGT---GTTTAAAT---TATTATCTT-----ACA-ACAAATATTTCTAC-TTANTT--GNAATATAA-CC---AA-----ATAGTT---T--AA-ATT--ATTTA-----TAAA-TTA-GTNAATTNTCAGA-ATTAATCAAGTTAAAA--TTTTA-CAG-A-T-ATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTCANCAAA-AT-TATGGACT-CTA-G-NCC--------T----------T--TT----------GA-TG--TTTTA-A------T-----TNT-GCG---TGT-T--GT-GCTA---AT------------TAA---T----------A-----GAAT--TAAA-CATN-CAA-A-TTGTTAG-C-A-TAAGAAACCT--GGC-TAGATAACTNA---A---------------------AT------CCA--AATG---------------AAT-----------------A--------------ACTTAAANTCAAACA---T-ACCAAATTGCT-GAA--------------T-C---A-AT---A------AAANCCTAA---TAC--TCCGA---CTCCAAACCTCG-CT-A-GTCAG-CGGCACGGAATAA-AAAGTGACCAACACCCCCAC-GAAAAACT--AGTC-AAA--C-CTG--TCTA---CTGG-TCAAAGT-CAC-GTGT-CAA---GTC-TGCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
gi|1 : ACA-TA-TGCGTTGAGTTGAA-----TATT-TATT-----A---ACAA-TACTT-TAC-TGAA------AATATAA-TTTGTAA-----ATAATTATCT--AA-ACT--ATCTA-----GACA-TTAAGTAAACTA--AAG-ATTAATTAA----------TTTA-CAA-AAT-ATTTTTACAGTAA-TTAAT-GTTAAAA-------TATTCACATCACCAAA-AT-TATGGACT-CTAGG-CCCTTTTTATTT----------T--TT----------AAATGAACTTTG-ACACTTGT-----TATTGCGATTCGT-TTAGTTGCTATAAATC-----------TAAACAT----------ACAAAGAAATCATAAA-CATG-CAA-AATTGTTAG-C-A--AAGAAACCTTCGGC-TAGATAACTAA---ATGAATATTTAAAAAATGAAATAC------CAA--AAAG---------------AAT-----------------A--------------AATTAA--TCAAACA---TTACCAAATTGTA-GAAGA------------T-T---A-AT---A------AACTCC-AA----AC--TCCAA--------AACCTCG-CTCA-GTCAGGTAGCACGGCACCATAAAGTGAC--ACACCCCAACAGAAAAACTT-AGTC-AAAAACACTGC-TCTATAACTGG-TCAA-GT-CAG-ATGT-CAA---GTC-TGCG--C---C-AATCGAGCTC--ACCACAA-A---TTG-CCGGGAAAATA
gi|10 : catTATT-GTG-TTA--CAC-TTGCAAAATGATTGCGG-T-TGTTTTAAATT-C-------GTGGAAAAT-----GCCGACT--GCGAACAT--AGC-GAATTTAAAACCACCACATTAATTTC---CCCATTTACAGTAGTACgtttaattattgaagaaataaagaaaaaaatcaacaacggacgctttaaatagtttcctaattaaggatattttttggttaaaactttttattaa
gi|11 : accAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-C-------GCcagtatacatgtatccattctcttagatt
gi|12 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaatgcggtggttttaatttcacac-TGTTTTAATTT-C-------GTGGAAAAA---TCCCCGACC--ACGAACAT--AGC-GAAATTAAAACCACTGCTACCATTTC---CCCATTCAa
gi|13 : ATGGACT-CTA-G-GCT--------T----------T--TTTTAAACGATCGA-TG--TTTTA-A------TAC---TTT-GCG---TGTAC--GT-ACTA---A------------------------------------------TAAA-TCTA-CAA-A-TTGCTtttttactttcctgtttactttatagaatgaacatttgttatt
gi|14 : --------CATGTATT-GCG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-CCTCATTTACAGTACAT--------GACC---CAAACTT--GGC-AAAATtgaagatatttaactccaa
gi|15 : AAAAA---TACCCGACA--GTGAACATATGGC-GCAATTAAAACCCCCGCAACCATTTC---CTCATTTACATTA-TATAT---AGTTATAT---TA
gi|17 : TTACATTAA-TTA-T-GTTTAAAATA----T--TCAACTTAACAAA-AT-TATGGACT-CTA-G-GCC--------T----------T--TTAC--------GA-TG--TTTTA-
gi|18 : GTATT-GTG-TCA--CAC-TTGC-AAATGA-TGCGG-TCTGTTTTAATTT-C-------G
gi|2 : AATTCAAATTTT-ATGACAAATATATACATACATGTATT-GTG-TCA--TAC-TTGCAAAATGATTGCAG-TGTGTTTTAATTT-C-------GCGGAAAAT---TCCCC-ACC--GCGAACAT--GGC-AAAATTAAAGCAACCGCAATCGTTTC---CCCATTTAC--TA-TACAT---GTTTAAAT---TATTATCTTA----ACA-ACAAATATTTCTAC-TTATTTTCGCAATATAA------AA-----ACAGTT---T--AA-A-C--ACTTA-----TAAATTTA-GTTAATTATTAGA-ATTAATCAAGTTAAAATCTTTTA-CAGTT-T-GTATTTACATTAA-TTA-T-GTTAAAAATACATGTATTCATCTTACCAAA-AT-TATGAACC-CTA-GTTCC--------T----------T--TT----------GA-TA--TTTTACA------TCGTAATGT-GTG---TGT-T--GT-GCTA---AT------------TAA---T----------A-----GAAT--TAAA-CATG-CAA-A-TTGTTAA-CTA-TAAGAAACCT--GGC-TAGA-----AA---A---------------------AT------CTA--AATG---------------AAT-----------------A--------------ACTTAAAGTCAAGCA---T-ACCAAA-TGCT-GAA--------------T-C---A-AT---A------AAACCCTAA---TACAGTCCGAT--CTTCAGACTTCA-CT-A-TTCAA-TGACACAG----G-AAAGTAACT-ACACCCTCAC-GA-------------AAA--C-CTG--TCCA---CTGG-TC-AAGT-CAC-GTGT-CAC---GTC-TGAA--CAAGC-AATA--GCTCA-ACCACCATAACTTTGTGTGGGAAAATA
gi|3 : AATATTTTAACATTAATT----ACTGTAA------AA-----ATATTT---TGTAA-ATT--AATTAATCTTTAGT-TTA-CTTAATGTCTAGA---TAGTTTAGATAATT--ATTTA-CAA-A-TTATATTTTCAGTAAAGTA-TTGTTAATAA-A----TATTCAACTCAACGCATATGTATGGATTTCTA-G-GCT--------TGTTTTTTAAATGATT----------GA-TG--TTTT---------T-----GCT-GTG---TAT-C--GT-GCTA---ATAATATCTATCTACAAG--T----------A-----GAAT--TCAA-CATT-CAA-A-T-GTTAG-C-A-TA-GAAACCT--GGC-TATATAACTAATGGA---------------------ATTTT---CCATTAATG---------------AATTAGCCACAGAATAATCAA--------------ACTATAATTCGAATACATT-ACCAAATTGCT-GAA--------------------G-AT---A----------TTTTA---TAC--TCCAA----TCTAAACCTCGTCT-C-GTCAG-TAGCACGGAAT-A-AAAGTGACCAATACCCCAAT-GAAAAACT--AGTCGAAA--C-CTGTTTCTAT--CTGG-TCAAA-T-CACGGTGT-CAGATTGTC-TGCGTTC---C-AATC--GGTC--ACCACAAT-A-TTCG-GCGGGAAAATA
gi|4 : ------T-----TGT-ACG---TG--------GCTA---AT------------AAA---TCTACTACAGAG-----GAAT--TAAAACATGGCAACA-TTGTTAGGC-AATGGAAAACCT--GGCATAGATAACTAA---G---------------------ATGAATTTCCA--AATG---------------AAT-----------------ACCAAAAGATATAAAACTTAAAT--AAACA---T-ACCAAATTGCTTGAAGATATGTTTTAACTT-CCAAA-AT---ACACTGAAAAACCTAA---TAC--CGCG----CTTC--------------GTCAG-CGGCACGGAATAA-AAAGTGACCAACA-CCCCAA-GAAAAACTAGAGTC-AAA----CTG--TCTA---CTGGCTCAAAGTACAC-GTGTGCAA---GTCTTGCG--C---C-AATC--GCCTGCACCACAATGA-TTTG-GCGGGAAAATAatagataatttatgggaaattataaaatgaaattaactcaacacgtgacgcttttaaatagtttctaatttaagatatttgtaaaactttttataaa
gi|5 : tgcgAAT---TATTACCTTCATAAACATACATGTATTTCTAC-GTATTTTCGCAATATAG------AA-----ATAGCT---T--AA-ATTTGATTTA-----TAAA-----GTGA--TCTCCGA-ATTAATCAA-TTA------TTTA-CAG-A-TGATATTTACGG-AA-CTA-A-GTTAAAAATA----T--TCAACTTACCAAA-AT-TATG-----------CCT--------T----------T--TT----------GA-TG--TTTAC-A------TCTT--TAT-ACA---TGT-T--GT-GCTA---AT------------TAC---T----------A--------T--TATA-------GA-A-TTGTTAG-CTA-TAATAAACC----AC-TA-ATGAGTC---------------------------T------TCA--AATGAATACCATTTTGAAGAAT-----------------A--------------ACTTAAAGTCAAACA---T-ACCCAAATACT-GAA--------------TAC---ATATTAAA------AAATCCTG-----AC--TC------CTTTAAAT-----TT-A-TTCAG-TGGCACGGGAC-A-AAAGTAATC----------------------GGTC-AAA------G--TC-A---C--G-T----GT-CAC-------------TC-TAAA--T---C-AATC--GCT-----CACAATAATTTTG-GCGGGAAAATAagatattttaaaaacgcgaaaataaagaaaaaaattctgaacacggacgctttaattatattttctaattaaagaatatttgtaaaacct
gi|6 : CAAATTGCTTGAA--------------------G-AT---ATTT---AACTCCAAAACACAC--TCAAAAAACTCTAA-CGTCG-CT-CCGTCAG-CGGCACGGAATAT-AAAGTGACCA-CACCCCAA--GAAAAACT--AGTCCAAA--C-CTG--TCTA---CTGG-TCAAAGT-CAC-GTGT-CAA---GTC-TGCA--C---CAAATC---CTCA-ACCACAATA---TTG-GC-GGAAAATAg
gi|7 : aatctaTGTATTAGTGGTCAAACAGCTTGCAAA-TGATTGCGGGT-TGTTTTAATTTTC-------GTGGAAAAGACATCCCCGAACTGGCGAAT-T--GGCCGAAATTAAAACA--CGCAATC-TTTCCCGCCCATTTACAGTG-GACTT---GCTCAAGTGGATAGTGTTC----------GCAAATA-TTCT---TTAGTT--GGAGCATAAGCCTGTAACTTATACAGTC---T--AACAGT--ATT-------TCAA-TAA-GTC---TTTCAGATAATAATCA----AAAA--TTTCATCAG-T-T-Agtaatcacagaaaataagaaaaaaactcaaacacggcgcttttaaatattttctaattaaagatatttgtaaaactttttat
gi|8 : AAATCAAATTTTTATATCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGAAAAATGATTAGGG-T-TGTTTTAATTT-A-------GCGGAAAAT---TCCCCGACC--GCAA--AT--AGT-GAAATTAAAAa
gi|9 : aggatgattttaggtggaacatactgtaagtggttataagtttgcggtgttaaaagtttgtagcttttaatattggtctaattacggtgattttattttcgtggAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-C-------GCacagcg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAAATAAAGAAAAAAACTCAACACGGACGCTTTTAAATATTTTCTAATTAAAGATATTTGTAAAACTTTTAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 44444444 1111111 111111 111 11 111 111 5555555555 11 11 444444444444444444444444444444444 11111 1111 11111 777777777777777777777777 22222 111 2222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 1 111 111 8888888888888888888888888888888888888888888888888888888888888888888888 111 888888888888888888888888888888888888888888888888888 111 222222 22 222222222222 2222 11 111 1111 111111 222 222
lowQualScore : 0 11111111 5 5 66 5 5 8 4 4444444 777777 77 1 77 4 3 444 00 8 4 777 0 0 3 444 7 0 7777777777 7 7 2 3 11 00 11 222222222222222222222222222222222 0 33333 1111 333 66666 444444444444444444444444 8 44444 0 8 222 1111111111 1 8 8 1 6 77 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 8 8 8 8 0 8 5 0 3 111 8 5 0 444 2222222222222222222222222222222222222222222222222222222222222222222222 555 444 8 3 888 777777777777777777777777777777777777777777777777777 1 5 6 6 666 77 000000 00 222222222222 777 2222 55 1 888 6 3 3 6 77 6 3333 6 333333 6 99 333 222 6
lowQualScore : . ........ . . .. . . . . ....... ...... .. . .. . . ... .. . . ... . . . ... . . .......... . . . . .. .. .. ................................. . ..... .... ... ..... ........................ . ..... . . ... .......... . . . . . .. ................................................................................................................................ .. . . . . . . . . . ... . . . ... ...................................................................... ... ... . . ... ................................................... . . . . ... .. ...... .. ............ ... .... .. . ... . . . . .. . .... . ...... . .. ... ... .
lowQualScore : 0 55555555 0 0 99 0 0 9 4 4444444 666666 99 7 99 4 8 000 88 0 2 555 8 8 8 000 0 2 0000000000 0 0 5 2 88 66 00 000000000000000000000000000000000 8 66666 0000 222 00000 888888888888888888888888 0 44444 8 0 222 4444444444 0 0 0 0 7 77 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 0 0 0 0 8 0 8 8 8 888 0 0 8 000 2222222222222222222222222222222222222222222222222222222222222222222222 444 000 0 5 777 000000000000000000000000000000000000000000000000000 8 2 7 7 333 33 888888 55 777777777777 555 5555 88 7 333 7 2 2 7 77 7 2222 7 555555 7 22 888 333 7
consensus : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----ACA-ACAAATATTTCTACTTATTTTCGCAATA--TAA---T--GTAA-----ACAGTT---TAA-ATT--ATTTATAAA-TTA-GTNAATTNTCAG---A-ATTAAT---CA---AGTTAAAA--T-----TTTA-CAG-A-T-ATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTTACCAAA-AT-TATGGACT-CTAG-GCC---------T----------T--TT----------GA-TG--TTTTA-A------TC-T--TNT-GCGT-GT-CGT------G-CTA---AT------------NAA---T----------A-----GAAT--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA---CTAA---A---------------------AT-----T-----CCATT---AATGAAT-----A----ATAA---AACTTAAANTCAAACA---T-ACCAAATTGC-T-GAA--T-GAT-----A------AANTCCT--AA---TAC--TCCG----A---CTTTAAACCTCG-C-T-N-GTCAG-CGGCACGGAAT-A-AAAGTGACC-ACACCCCAAC-GAAAAACT--AGT-C-AAA--C-CTG--TCTA---CTGG-TCAAAGT-CAC-GTGT-CAA---GTC-TGCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
Reference ( family-477 ) : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----ACA-ACAAATATTTCTACTTANTTTCGCAATA--TAA---T--GTAA-----ATAGTT---TAA-ATT--ATTTATAAA-TTA-GTNAATTNTCAG---A-ATTAAT---CA---AGTTAAAA--T-----TTTA-CAG-A-T-ATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTTACCAAA-AT-TATGGACT-CTAG-NCC---------T----------T--TT----------GA-TG--TTTTA-A------T-----TNT-GCGT-GT-CGT------G-CTA---AT------------TAA---T----------A-----GAAT--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA---CTAA---A---------------------A------T-----CCA-----AATGAAT-----------------AACTTAAANTCAAACA---T-ACCAAATTGC-T-GAA--TCGAT-----A------AAATCCT--AA---TAC--TCCG----A---CTTTAAACCTCG-C-T-A-GTCAG-CGGCACGGAAT-A-AAAGTGACCAACACCCCAAC-GAAAAACT--AGT-C-AAA--C-CTG--TCTA---CTGG-TCAAAGT-CAC-GTGT-CAA---GTC-TGCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
gi|1 : TACA-TA-TGCGTTGAGTTGAA-----TATT-TATT-----A---ACAA-TACTT-TACTGAA------AATA--TAA---TTTGTAA-----ATAATTATCTAA-ACT--ATCTAGACA-TTAAGTAAACTA--AA---G-ATTAAT---TA---A---------------TTTA-CAA-AAT-ATTTTTACAGTAA-TTAAT-GTTAAAA-------TATTCACATCACCAAA-AT-TATGGACT-CTAG-GCCCTTTTTATTT----------T--TT----------AAATGAACTTTG-ACACTTGT-----TATTGCGA-TT-CGTTTAGTTG-CTATAAATC-----------TAAACAT----------ACAAAGAAATCATAAA-CATG-CAA-AATTGTTAG-C-A-AAGAAACCTTCGGC-TAGATAA---CTAA---ATGAATATTTAAAAAATGAAATA------C-----CAA-----AAAGAAT-----------------AAATTAA--TCAAACA---TTACCAAATTGT-A-GAAGATTAAT-----A------AACTCC---AA----AC--TCCA----A--------AACCTCG-C-TCA-GTCAGGTAGCACGGCACCATAAAGTGAC--ACACCCCAACAGAAAAACTT-AGT-C-AAAAACACTGC-TCTATAACTGG-TCAA-GT-CAG-ATGT-CAA---GTC-TGCG--C---C-AATCGAGCTC--ACCACAA-A---TTG-CCGGGAAAATA
gi|10 : caTATT-GTG-TTA--CAC-TTGCAAAATGATTGCGG-T-TGTTTTAAATT-C-------GTGGAAAAT-----GCCGACT--GCGAACAT--AGC-GAATTTAAAACCACCACATTAATTTCCC---CATTTACAGTAGTACgtttaattattgaagaaataaagaaaaaaatcaacaacggacgctttaaatagtttcctaattaaggatattttttggttaaaactttttattaa
gi|11 : accGT-GAAATTAAAACCACCGCAcagtatacatgtatccattctcttagatt
gi|11 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaaAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-C-------GCacaaatcaaatttcatgttaaacacatatattgtttcagagttgcaaaatgattgcagttgttttaattccgca
gi|12 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaatgcggtggttttaatttcacac-TGTTTTAATTT-C-------GTGGAAAAA---TCCCCGACC--ACGAACAT--AGC-GAAATTAAAACCACTGCTACCATTTCCC---CATTCAa
gi|13 : ATGGACT-CTAG-GCT---------T----------T--TTTTAAACGATCGA-TG--TTTTA-A------TAC---TTT-GCGT-GTACGT------A-CTA---AT------------AAA---T----------tttttactttcctgtttactttatagaatgaacatttgttatt
gi|14 : -----CATGTATT-GCG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-CCTCATTTACAGTACAT--------GACC---CAAACTT--GGC-AAAATctacaaattgcttgaagatatttaactccaa
gi|15 : AAAAA---TACCCGACA--GTGAACATATGGC-GCAATTAAAACCCCCGCAACCATTTCCT---CATTTACATTA-TATAT---AGTTATAT---TA
gi|17 : TTACATTAA-TTA-T-GTTTAAAATA----T--TCAACTTAACAAA-AT-TATGGACT-CTAG-GCC---------T----------T--TTAC--------GA-TG--TTTTA-
gi|18 : GTATT-GTG-TCA--CAC-TTGC-AAATGA-TGCGG-TCTGTTTTAATTT-C-------G
gi|2 : AATTCAAATTTT-ATGACAAATATATACATACATGTATT-GTG-TCA--TAC-TTGCAAAATGATTGCAG-TGTGTTTTAATTT-C-------GCGGAAAAT---TCCCC-ACC--GCGAACAT--GGC-AAAATTAAAGCAACCGCAATCGTTTCCC---CATTTAC--TA-TACAT---GTTTAAAT---TATTATCTTA----ACA-ACAAATATTTCTACTTATTTTCGCAATA--TAA--------AA-----ACAGTT---TAA-A-C--ACTTATAAATTTA-GTTAATTATTAG---A-ATTAAT---CA---AGTTAAAATCT-----TTTA-CAGTT-T-GTATTTACATTAA-TTA-T-GTTAAAAATACATGTATTCATCTTACCAAA-AT-TATGAACC-CTAGTTCC---------T----------T--TT----------GA-TA--TTTTACA------TCGTAATGT-GTGT-GT-TGT------G-CTA---AT------------TAA---T----------A-----GAAT--TAAA-CATG-CAA-A-TTGTTAA-CTATAAGAAACCT--GGC-TAGA--------AA---A---------------------A------T-----CTA-----AATGAAT-----------------AACTTAAAGTCAAGCA---T-ACCAAA-TGC-T-GAA--TCAAT-----A------AAACCCT--AA---TACAGTCCG----AT--CTTCAGACTTCA-C-T-A-TTCAA-TGACACAG----G-AAAGTAACT-ACACCCTCAC-GA--------------AAA--C-CTG--TCCA---CTGG-TC-AAGT-CAC-GTGT-CAC---GTC-TGAA--CAAGC-AATA--GCTCA-ACCACCATAACTTTGTGTGGGAAAATA
gi|3 : TATTTTAACATTAATTAC---T--GTAA-----A----------A-ATA--TTTTGTAAA-TTA-ATTAATCTTTAGTTTA-CTTAATGTCTAGATAGTTTAGA--TAATTATTTA-CAA-A-TTATATTTTCAGTAAAGTA-TTGTTAATAA-A----TATTCAACTCAACGCATATGTATGGATTTCTAG-GCT---------TGTTTTTTAAATGATT----------GA-TG--TTTT---------T-----GCT-GTGT-AT-CGT------G-CTA---ATAATATCTATCTACAAG--T----------A-----GAAT--TCAA-CATT-CAA-A-T-GTTAG-C-ATA-GAAACCT--GGC-TATATAA---CTAATGGA---------------------ATTT---T-----CCATT---AATGAATTAGCCACAGAATAATCAAACTATAATTCGAATACATT-ACCAAATTGC-T-GAA----GAT--------------ATTTT---A---TAC--TCCA----A----TCTAAACCTCGTC-T-C-GTCAG-TAGCACGGAAT-A-AAAGTGACCAATACCCCAAT-GAAAAACT--AGT-CGAAA--C-CTGTTTCTAT--CTGG-TCAAA-T-CACGGTGT-CAGATTGTC-TGCGTTC---C-AATC--GGTC--ACCACAAT-A-TTCG-GCGGGAAAATA
gi|4 : aaT-GCGTTGTACGT------GGCTA---AT------------AAA---TCTACTACAGAG-----GAAT--TAAAACATGGCAACA-TTGTTAGGCAATGGAAAACCT--GGCATAGATAA---CTAA---G---------------------ATGAATTT-----CCA-----AATGAATACCAAAAGATATAA---AACTTAAAT--AAACA---T-ACCAAATTGCTT-GAA----GAT-----ATGTTTTAACTTCCAAAA---TAC--ACTGAAAAA---CCTAATACCGCG-CTT-C-GTCAG-CGGCACGGAATAA-AAAGTGACCAACACCCCAA--GAAAAACTAGAGT-C-AAA----CTG--TCTA---CTGGCTCAAAGTACAC-GTGTGCAA---GTCTTGCG--C---C-AATC--GCCTGCACCACAATGA-TTTG-GCGGGAAAATAatagataatttatgggaaattataaaatgaaattaactcaacacgtgacgcttttaaatagtttctaatttaagatatttgtaaaactttttataaa
gi|5 : AAT---TATTACCTTCATAAACATACATGTATTTCTACGTATTTTCGCAATA--TAG--------AA-----ATAGCT---TAA-ATTTGATTTATAAA-----GTGA--TCTCCG---A-ATTAAT---CA---A-TTA-----------TTTA-CAG-A-TGATATTTACGG-AA-CTA-A-GTTAAAAATA----T--TCAACTTACCAAA-AT-TATG----------CCT---------T----------T--TT----------GA-TG--TTTAC-A------TCTT--TAT-ACAT-GT-TGT------G-CTA---AT------------TAC---T----------A--------T--TATA-------GA-A-TTGTTAG-CTATAATAAACC----AC-TA-ATGAGTCTTCA---A---------------------A------TGAATACCATTTTGAA-GAAT-----------------AACTTAAAGTCAAACA---T-ACCCAAATAC-T-GAA--TACATATTAAA------AAATCCT--G-----AC--TC----------CTTTAAAT-----T-T-A-TTCAG-TGGCACGGGAC-A-AAAGTAATC----------------------GGT-C-AAA------G--TC-A---C--G-T----GT-CAC-------------TC-TAAA--T---C-AATC--GCT-----CACAATAATTTTG-GCGGGAAAATAagatattttaaaaacgcgaaaataaagaaaaaaattctgaacacggacgctttaattatattttctaattaaagaatatttgtaaaacct
gi|6 : CAAATTGC-TTGAA----GAT-----ATTT---AACTCCA--AAACACAC--TCAA----AAAACTCTAA-CGTCG-C-T-CCGTCAG-CGGCACGGAAT-ATAAAGTGACC-ACACCCCAA--GAAAAACT--AGTCC-AAA--C-CTG--TCTA---CTGG-TCAAAGT-CAC-GTGT-CAA---GTC-TGCA--C---CAAATC---CTCA-ACCACAATA---TTG-GC-GGAAAATAg
gi|7 : aatctaTGTATTAGTGGTCAAACAGCTTGCAAA-TGATTGCGGGT-TGTTTTAATTTTC-------GTGGAAAAGACATCCCCGAACTGGCGAAT-T--GGCCGAAATTAAAAC-AC-GCAATC-TTTCCCGCCCATTTACAGTG-GACTT---GCTCAAGTGGATAGTGTTC----------GCAAATA-TTCT--TTAGTT--GGAGCA--TAAGCCT--GTAACTTATACAGTC---TAACAGT--ATT--TCAA-TAA-GTC---TTTCAG---ATAATAAT---CA-------AAAA--T-----TTCATCAG-T-T-Agtaatcacagaaaataagaaaaaaactcaaacacggcgcttttaaatattttctaattaaagatatttgtaaaactttttat
gi|8 : AAATCAAATTTTTATATCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGAAAAATGATTAGGG-T-TGTTTTAATTT-A-------GCGGAAAAT---TCCCCGACC--GCAA--AT--AGT-GAAATTAAAAACAGCGa
gi|9 : aggatgattttaggtggaacatactgtaagtggttataagtttgcggtgttaaaagtttgtagcttttaatattggtctaattacggtgattttattttcgtggGT-GAAATTAAAACCACCGCA
gi|9 : gtttttattttcccagtgctaaaattcgcgattttactatatttggatctaaaAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-C-------GCacaaatcaaatttcatgttaaacacatatattgtttcagagttgcaaaatgattgcagttgttttaattccgcaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAAATAAAGAAAAAAACTCAACACGGACGCTTTTAAATATTTTCTAATTAAAGATATTTGTAAAACTTTTAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 44444444 1111111 111111 111 11 111 111 5555555555 11 11 444444444444444444444444444444444 11111 1111 11111 777777777777777777777777 22222 111 2222222222 4444444444444444444444444 9999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 1 111 1111111 00000000000000000000000000000000000000000000000000000000000000 11 222 1 999999999999999999999999999999999999999999999999 222 111111 111 22222222222222222222 1111111111 111 111111 222 222
lowQualScore : 0 11111111 5 5 66 5 5 8 4 4444444 777777 77 1 77 4 3 444 00 8 4 777 0 0 3 444 7 0 7777777777 7 7 2 3 5 00 11 111111111111111111111111111111111 0 33333 1111 333 66666 444444444444444444444444 8 44444 0 8 222 1111111111 1 8 8 1 6 6 6 9999999999999999999999999 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 11 8 8 8 8 0 8 5 0 3 111 8 5 0 5555555 88888888888888888888888888888888888888888888888888888888888888 1 11 11 222 3 3 222222222222222222222222222222222222222222222222 1 5 6 111 6 0 444444 6 1 222 66666666666666666666 99 5555555555 6 7 2 6 6 6 111 6 333333 6 99 333 222 6
lowQualScore : . ........ . . .. . . . . ....... ...... .. . .. . . ... .. . . ... . . . ... . . .......... . . . . . .. .. ................................. . ..... .... ... ..... ........................ . ..... . . ... .......... . . . . . . . ......................... .................................................................................. . .. . . . . . . . . . ... . . . ....... .............................................................. . .. .. ... . . ................................................ . . . ... . . ...... . . ... .................... .. .......... . . . . . . ... . ...... . .. ... ... .
lowQualScore : 0 55555555 0 0 99 0 0 9 4 4444444 666666 99 7 99 4 8 000 88 0 2 555 8 8 8 000 0 2 0000000000 0 0 5 2 6 66 00 666666666666666666666666666666666 8 66666 0000 222 00000 888888888888888888888888 0 44444 8 0 222 4444444444 0 0 0 0 7 7 7 7777777777777777777777777 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 00 0 0 0 0 8 0 8 8 8 888 0 0 8 8888888 88888888888888888888888888888888888888888888888888888888888888 4 00 88 000 5 3 333333333333333333333333333333333333333333333333 8 2 7 000 7 7 222222 7 0 555 00000000000000000000 22 8888888888 7 3 5 7 7 7 777 7 555555 7 22 888 333 7
consensus : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----ACA-ACAAATATTTCTACTTATTTTCGCAATA--TAA---T--GTAA-----ACAGTT---TAA-ATT--ATTTATAAA-TTA-GTNAATTNTCAG---A-ATTAAT---CA---AGTTAAAA--T-----TTTA-CAG-A-T-ATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTTACCAAA-AT-TATGGACT-CTAG-GCC-T----------T--TT----------GATGTTTTA-A--------T----C-T--TN-T----GCGT-GT-CGT------G-CTAATAA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA--CT---AATG-A-----AT-----T--CCATTAATGAA----T---------A---------ATAA---AACTTAA--ANTCAAACA---TACCAAATTGCT-GAA---T-G-AT-----A------AACTCCTAA---TAC--TCCGA----CTTTAAACCTCG-CT-N-GTCA-GCGGCACGG-AATA-AAA-GTGACC-A-CACCCCAAC-GAAAAAC-TAG--T-C--AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
Reference ( family-477 ) : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----ACA-ACAAATATTTCTACTTATTTTCGCAATA--TAA---T--GTAA-----ACAGTT---TAA-ATT--ATTTATAAA-TTA-GTNAATTNTCAG---A-ATTAAT---CA---AGTTAAAA--T-----TTTA-CAG-A-T-ATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTTACCAAA-AT-TATGGACT-CTAG-GCC-T----------T--TT----------GATGTTTTA-A--------T----C-T--TN-T----GCGT-GT-CGT------G-CTAATNA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA--CT---AA---A-----AT-----T--CCATTAATGAA----T---------A---------ATAA---AACTTAA--ANTCAAACA---TACCAAATTGCT-GAA---T-G-AT-----A------AANTCCTAA---TAC--TCCGA----CTTTAAACCTCG-CT-N-GTCA-GCGGCACGG-AATA-AAA-GTGACC-A-CACCCCAAC-GAAAAAC-TAG--T-C--AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
gi|1 : TACA-TA-TGCGTTGAGTTGAA-----TATT-TATT-----A---ACAA-TACTT-TACTGA------AAATA--TAA---TTTGTAA-----ATAATTATCTAA-ACT--ATCTAGACA-TTAAGTAAACTA--AA---G-ATTAAT---TA---A---------------TTTA-CAA-AAT-ATTTTTACAGTAA-TTAAT-GTTAAAA-------TATTCACATCACCAAA-AT-TATGGACT-CTAG-GCCCT----------T--TT----------TATTTTTTA-AATGAACTTTGACAC-T--TG-TTATTGCGA-TT-CGTTTAGTTG-CTA-TAA-------------ATCTAAACATACAAAGAAATCATAAA-CATG-CAA-AATTGTTAG-C-A-AAGAAACCTTCGGC-TAGATAA--CT---AA---ATGAATAT-----T--TAAAAAATGAAATACC---------A---------AAAA---GAATAAATTAATCAAACAT--TACCAAATTGTA-GAAGATT-A-AT-----A------AACTCC-AA----AC--TCCA---------AAACCTCG-CTCA-GTCAGGTAGCACGGCACCATAAA-GTGA-C-A-CACCCCAACAGAAAAACTTAG--T-CAAAAACACTGC-TCTATAA-CTGG-TC-AAGT-CAG-ATGT-CAA---GTCT-GCG--C---C-AATCGAGCTC--ACCACAA-A---TTG-CCGGGAAAATA
gi|10 : caTATT-GTG-TTA--CAC-TTGCAAAATGATTGCGG-T-TGTTTTAAATT-C-------GTGGAAAAT-----GCCGACT--GCGAACAT--AGC-GAATTTAAAACCACCACATTAATTTCCC---CATTTACAGTAGTACgtttaattattgaagaaataaagaaaaaaatcaacaacggacgctttaaatagtttcctaattaaggatattttttggttaaaactttttattaa
gi|11 : accGT-GAAATTAAAACCACCGCAcagtatacatgtatccattctcttagatt
gi|11 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaaAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-C-------GCacaaatcaaatttcatgttaaacacatatattgtttcagagttgcaaaatgattgcagttgttttaattccgca
gi|12 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaatgcggtggttttaatttcacac-TGTTTTAATTT-C-------GTGGAAAAA---TCCCCGACC--ACGAACAT--AGC-GAAATTAAAACCACTGCTACCATTTCCC---CATTCAa
gi|13 : ATGGACT-CTAG-GCT-T----------T--TTTTAAACGATCGATGTTTTA-A--------T----A-C--TT-T----GCGT-GTACGT------A-CTAATAA-------------AT------------tttttactttcctgtttactttatagaatgaacatttgttatt
gi|14 : -----CATGTATT-GCG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-CCTCATTTACAGTACAT--------GACC---CAAACTT--GGC-AAAATctacaaattgcttgaagatatttaactccaa
gi|15 : AAAAA---TACCCGACA--GTGAACATATGGC-GCAATTAAAACCCCCGCAACCATTTCCT---CATTTACATTA-TATAT---AGTTATAT---TA
gi|17 : TTACATTAA-TTA-T-GTTTAAAATA----T--TCAACTTAACAAA-AT-TATGGACT-CTAG-GCC-T----------T--TTAC--------GATGTTTTA-
gi|18 : GTATT-GTG-TCA--CAC-TTGC-AAATGA-TGCGG-TCTGTTTTAATTT-C-------G
gi|2 : AATTCAAATTTT-ATGACAAATATATACATACATGTATT-GTG-TCA--TAC-TTGCAAAATGATTGCAG-TGTGTTTTAATTT-C-------GCGGAAAAT---TCCCC-ACC--GCGAACAT--GGC-AAAATTAAAGCAACCGCAATCGTTTCCC---CATTTAC--TA-TACAT---GTTTAAAT---TATTATCTTA----ACA-ACAAATATTTCTACTTATTTTCGCAATA--TAA--------AA-----ACAGTT---TAA-A-C--ACTTATAAATTTA-GTTAATTATTAG---A-ATTAAT---CA---AGTTAAAATCT-----TTTA-CAGTT-T-GTATTTACATTAA-TTA-T-GTTAAAAATACATGTATTCATCTTACCAAA-AT-TATGAACC-CTAGTTCC-T----------T--TT----------GATATTTTACA--------T----CGTAATG-T----GTGT-GT-TGT------G-CTAATTA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAA-CTATAAGAAACCT--GGC-TAGA----------AA---A-----A------T--CTA--AATGAA----T--------------------------AACTTAA--AGTCAAGCA---TACCAAA-TGCT-GAA---TCA-AT-----A------AAACCCTAA---TACAGTCCGAT---CTTCAGACTTCA-CT-A-TTCA-ATGACACAG----G-AAA-GTAACT-A-CACCCTCAC-GA----------------AAAC-CTG--TCC---A-CTGG-TC-AAGT-CAC-GTGT-CAC---GTCT-GAA--CAAGC-AATA--GCTCA-ACCACCATAACTTTGTGTGGGAAAATA
gi|3 : TATTTTAACATTAATTAC---T--GTAA-----A----------A-ATA--TTTTGTAAA-TTA-ATTAATCTTTAGTTTA-CTTAATGTCTAGATAGTTTAGA--TAATTATTTA-CAA-A-TTATATTTTCAGTAAAGTA-TTGTTAATAA-A----TATTCAACTCAACGCATATGTATGGATTTCTAG-GCT-TGTTTTTTAAATGATT----------GATGTTTT------------------T--GC-T----GTGT-AT-CGT------G-CTAATAATATCTATCTACAAGT------------AGAA-T--TCAA-CATT-CAA-A-T-GTTAG-C-ATA-GAAACCT--GGC-TATATAA--CT---AATGGA-----AT-----TTTCCATTAATGAA----TTAGCCACAGA---------ATAATCAAACTATA--ATTCGAATACATTACCAAATTGCT-GAA-----G-AT-----A---------TTTTA----TAC--TCCAA-----TCTAAACCTCGTCT-C-GTCA-GTAGCACGG-AATA-AAA-GTGACCAA-TACCCCAAT-GAAAAAC-TAG--T-CG-AAAC-CTGTTTCT---ATCTGG-TCAAA-T-CACGGTGT-CAGATTGTCT-GCGTTC---C-AATC--GGTC--ACCACAAT-A-TTCG-GCGGGAAAATA
gi|4 : aa-T----GCGTTGTACGT------GGCTAATAA-------------ATCTACTACAGA--GGAA-T--TAAAACATGGCAACA-TTGTTAGGCAATGGAAAACCT--GGCATAGATAA--CT---AA---G-----ATGAATTT--CCA--AATGAA----T---------ACCAAAAGATATAA---AACTTAA--AT--AAACA---TACCAAATTGCTTGAA-----G-AT-----ATGTTTTAACTTCCAAAA-TAC--ACTGAAAAACCTAATACCGCG-CT-TCGTCA-GCGGCACGG-AATA-AAAAGTGACC-AACACCCCAA--GAAAAAC-TAGAGT-C--AAAC--TG--TCT---A-CTGGCTCAAAGTACAC-GTGTGCAA---GTCTTGCG--C---C-AATC--GCCTGCACCACAATGA-TTTG-GCGGGAAAATAatagataatttatgggaaattataaaatgaaattaactcaacacgtgacgcttttaaatagtttctaatttaagatatttgtaaaactttttataaa
gi|5 : AAT---TATTACCTTCATAAACATACATGTATTTCTACGTATTTTCGCAATA--TAG--------AA-----ATAGCT---TAA-ATTTGATTTATAAA-----GTGA--TCTCCG---A-ATTAAT---CA---A-TTA-----------TTTA-CAG-A-TGATATTTACGG-AA-CTA-A-GTTAAAAATA----T--TCAACTTACCAAA-AT-TATG-----C-----CT-T----------T--TT----------GATGTTTAC-A--------T----C-T--TTAT----ACAT-GT-TGT------G-CTAATTA-------------CT------------A----T--TATA-------GA-A-TTGTTAG-CTATAATAAACC----AC-TA-ATGAGTCTTCAAATG-A-----AT-----A--CCATTT-TGAA----G---------A---------ATAA-----CTTAA--AGTCAAACA---TACCCAAATACT-GAA---T-ACATATTAAA------AAATCCTG-----AC--TC-------CTTTAAAT-----TT-A-TTCA-GTGGCACGG-GACA-AAA-GTAATC----------------------GG--T-C--AAA------------------G-TCA-------C-GTGT-C-A---CTCT-AAA--T---C-AATC--GCT-----CACAATAATTTTG-GCGGGAAAATAagatattttaaaaacgcgaaaataaagaaaaaaattctgaacacggacgctttaattatattttctaattaaagaatatttgtaaaacct
gi|6 : CAAATTGCTTGAA-----G-AT-----ATTT---AACTCCAAAACACAC--TCAAAAAA-CTCTAA-CGTCG-CT-CCGTCA-GCGGCACGG-AATATAAA-GTGACC-A-CACCCCAA--GAAAAAC-TAG--TCC--AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCA--C---CAAATC---CTCA-ACCACAATA---TTG-GC-GGAAAATAg
gi|7 : aatctaTGTATTAGTGGTCAAACAGCTTGCAAA-TGATTGCGGGT-TGTTTTAATTTTC-------GTGGAAAAGACATCCCCGAACTGGCGAAT-T--GGCCGAAATTAAAAC-AC-GCAATC-TTTCCCGCCCATTTACAGTG-GACTT---GCTCAAGTGGATAGTGTTC----------GCAAATA-TTCT--TTAGTT--GGAGCA--TAAGCCT--GTAACTTATACAGTC---TAACAGT--ATT--TCAA-TAA-GTC---TTTCAG---ATAATAAT---CA-------AAAA--T-----TTCATCAG-T-T-Agtaatcacagaaaataagaaaaaaactcaaacacggcgcttttaaatattttctaattaaagatatttgtaaaactttttat
gi|8 : AAATCAAATTTTTATATCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGAAAAATGATTAGGG-T-TGTTTTAATTT-A-------GCGGAAAAT---TCCCCGACC--GCAA--AT--AGT-GAAATTAAAAACAGCGa
gi|9 : aggatgattttaggtggaacatactgtaagtggttataagtttgcggtgttaaaagtttgtagcttttaatattggtctaattacggtgattttattttcgtggGT-GAAATTAAAACCACCGCA
gi|9 : gtttttattttcccagtgctaaaattcgcgattttactatatttggatctaaaAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-C-------GCacaaatcaaatttcatgttaaacacatatattgtttcagagttgcaaaatgattgcagttgttttaattccgcaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAAATAAAGAAAAAAACTCAACACGGACGCTTTTAAATATTTTCTAATTAAAGATATTTGTAAAACTTTTAT
Alignments
lowQualScore : 1 44444444 1111111 111111 111 11 111 111 55555555555 11 11 444444444444444444444444444444444 11111 1111 11111 7777777777777777777777 2222 111 2222222222 4444444444444444444444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 1 111 1111111 111 8888888888888888888888888888888888888888888888888888888 11 111 1 888888888888888888888888888888888888888888888888 22 111111 1111 22 111111 222222222 111 111 111111 222 222
lowQualScore : 0 11111111 5 5 66 5 5 8 4 4444444 777777 77 1 77 4 3 444 00 8 4 777 0 0 3 444 7 0 77777777777 7 7 2 3 5 00 11 111111111111111111111111111111111 0 33333 1111 333 66666 4444444444444444444444 8 4444 0 8 222 1111111111 1 8 8 1 6 6 6 9999999999999999999999999 9999999999999999999999999999999999999999999999999999999999999999999999999999999999 8 11 8 8 8 8 0 8 5 0 3 111 8 5 0 5555555 999 6666666666666666666666666666666666666666666666666666666 1 11 11 444 8 3 3 777777777777777777777777777777777777777777777777 1 5 6 11 77 444444 6 3333 00 3 6 111111 111111111 888 6 7777 6 6 111 6 333333 6 99 333 222 6
lowQualScore : . ........ . . .. . . . . ....... ...... .. . .. . . ... .. . . ... . . . ... . . ........... . . . . . .. .. ................................. . ..... .... ... ..... ...................... . .... . . ... .......... . . . . . . . ......................... .................................................................................. . .. . . . . . . . . . ... . . . ....... ... ....................................................... . .. .. ... . . . ................................................ . . . .. .. ...... . .... .. . . ...... ......... ... . .... . . ... . ...... . .. ... ... .
lowQualScore : 0 55555555 0 0 99 0 0 9 4 4444444 666666 99 7 99 4 8 000 88 0 2 555 8 8 8 000 0 2 00000000000 0 0 5 2 6 66 00 666666666666666666666666666666666 8 66666 0000 222 00000 8888888888888888888888 0 4444 8 0 222 4444444444 0 0 0 0 7 7 7 7777777777777777777777777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 00 0 0 0 0 8 0 8 8 8 888 0 0 8 8888888 888 8888888888888888888888888888888888888888888888888888888 4 00 88 000 0 5 3 555555555555555555555555555555555555555555555555 8 2 7 00 33 222222 7 5555 22 2 7 777777 777777777 333 7 3333 7 7 777 7 555555 7 22 888 333 7
consensus : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----A-CA-ACAAATATTTCTACTTATTTTCGCAATA--TAA---T--GTAA-----ACAGTT---TAA-ACT--ATTTATAAATT-A-GTNAATTNTCAG---A-ATTAAT---CA---AGTTAAAAT-----TTTA-CAGA-TTATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTTACCAAA-AT-TATGGACT-CTAGG-CC-T----------T--TT----------GATGTTTTA-A--------T----C-T--TN-T----GCGT-GT-CGT------G-CTAATAA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA--CT---AA--TGAA---TT-CCATT-----AATGAA----T---------A---------ATAA---AACTTAA--ANTCAAACA---T-ACCAAATTGCT-GAA---T-G-AT-----A------AACTCCTAA---TAC--TCCGA----CTTTAAACCTCG-CTC-GTCAG-CGGCACGGAAT-A-AAA-GTGACC-A-CACCCCAAC-GAAAAACT-AG--T-C-AAA--C-CTG--TCTA---CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
Reference ( family-477 ) : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----A-CA-ACAAATATTTCTACTTATTTTCGCAATA--TAA---T--GTAA-----ACAGTT---TAA-ATT--ATTTATAAATT-A-GTNAATTNTCAG---A-ATTAAT---CA---AGTTAAAAT-----TTTA-CAGA-T-ATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTTACCAAA-AT-TATGGACT-CTAGG-CC-T----------T--TT----------GATGTTTTA-A--------T----C-T--TN-T----GCGT-GT-CGT------G-CTAATAA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA--CT---AA--TGAA---TT-CCATT-----AATGAA----T---------A---------ATAA---AACTTAA--ANTCAAACA---T-ACCAAATTGCT-GAA---T-G-AT-----A------AACTCCTAA---TAC--TCCGA----CTTTAAACCTCG-CTN-GTCAG-CGGCACGGAAT-A-AAA-GTGACC-A-CACCCCAAC-GAAAAACT-AG--T-C-AAA--C-CTG--TCTA---CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
gi|1 : TACA-TA-TGCGTTGAGTTGAA-----TATT-TATT-----A----ACAA-TACTT-TACTGA------AAATA--TAA---TTTGTAA-----ATAATTATCTAA-ACT--ATCTAGACATT-AAGTAAACTA--AA---G-ATTAAT---TA---A-------------TTTA-CAAAAT-ATTTTTACAGTAA-TTAAT-GTTAAAA-------TATTCACATCACCAAA-AT-TATGGACT-CTAGG-CCCT----------T--TT----------TATTTTTTA-AATGAACTTTGACAC-T--TG-TTATTGCGA-TT-CGTTTAGTTG-CTA-TAA-------------ATCTAAACATACAAAGAAATCATAAA-CATG-CAA-AATTGTTAG-C-A-AAGAAACCTTCGGC-TAGATAA--CT---AAA-TGAA---T----ATTTAAAAAATGAAATACC---------A---------AAAA---GAATAAATTAATCAAACA---TTACCAAATTGTA-GAAGATT-A-AT-----A------AACTCC-AA----AC--TCCAA---------AACCTCG-CTCAGTCAGGTAGCACGGCACCATAAA-GTGAC--A-CACCCCAACAGAAAAACTTAG--T-C-AAAAACACTGC-TCTATAACTGG-TCAA-GT-CAG-ATGT-CAA---GTCT-GCG--C---C-AATCGAGCTC--ACCACAA-A---TTG-CCGGGAAAATA
gi|10 : caTATT-GTG-TTA--CAC-TTGCAAAATGATTGCGG-T-TGTTTTAAATT-C-------GTGGAAAAT-----GCCGACT--GCGAACAT--AGC-GAATTTAAAACCACCACATTAATTTCCC---CATTTACAGTAGTACgtttaattattgaagaaataaagaaaaaaatcaacaacggacgctttaaatagtttcctaattaaggatattttttggttaaaactttttattaa
gi|11 : accGT-GAAATTAAAACCACCGCAcagtatacatgtatccattctcttagatt
gi|11 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaaAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-C-------GCacaaatcaaatttcatgttaaacacatatattgtttcagagttgcaaaatgattgcagttgttttaattccgca
gi|12 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaatgcggtggttttaatttcacac-TGTTTTAATTT-C-------GTGGAAAAA---TCCCCGACC--ACGAACAT--AGC-GAAATTAAAACCACTGCTACCATTTCCC---CATTCAa
gi|13 : ATGGACT-CTAGG-CT-T----------T--TTTTAAACGATCGATGTTTTA-A--------T----A-C--TT-T----GCGT-GTACGT------A-CTAATAA-------------AT------------tttttactttcctgtttactttatagaatgaacatttgttatt
gi|14 : -----CATGTATT-GCG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-CCTCATTTACAGTACAT--------GACC---CAAACTT--GGC-AAAATctacaaattgcttgaagatatttaactccaa
gi|15 : AAAAA---TACCCGACA--GTGAACATATGGC-GCAATTAAAACCCCCGCAACCATTTCCT---CATTTACATTA-TATAT---AGTTATAT---TA
gi|17 : TTACATTAA-TTA-T-GTTTAAAATA----T--TCAACTTAACAAA-AT-TATGGACT-CTAGG-CC-T----------T--TTAC--------GATGTTTTA-
gi|18 : GTATT-GTG-TCA--CAC-TTGC-AAATGA-TGCGG-TCTGTTTTAATTT-C-------G
gi|2 : AATTCAAATTTT-ATGACAAATATATACATACATGTATT-GTG-TCA--TAC-TTGCAAAATGATTGCAG-TGTGTTTTAATTT-C-------GCGGAAAAT---TCCCC-ACC--GCGAACAT--GGC-AAAATTAAAGCAACCGCAATCGTTTCCC---CATTTAC--TA-TACAT---GTTTAAAT---TATTATCTT-----AACA-ACAAATATTTCTACTTATTTTCGCAATA--TAA--------AA-----ACAGTT---TAA-AC---ACTTATAAATTTA-GTTAATTATTAG---A-ATTAAT---CA---AGTTAAAATCT---TTTA-CAGT-TTGTATTTACATTAA-TTA-T-GTTAAAAATACATGTATTCATCTTACCAAA-AT-TATGAACC-CTAGTTCC-T----------T--TT----------GATATTTTACA--------T----CGTAATG-T----GTGT-GT-TGT------G-CTAATTA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAA-CTATAAGAAACCT--GGC-TAGA----------AA----AA---T--CTA-------AATGAA----T---------A---------A--------CTTAA--AGTCAAGCA---T-ACCAAA-TGCT-GAA---TCA-AT-----A------AAACCCTAA---TACAGTCCGAT---CTTCAGACTTCA-CTA-TTCAA-TGACACAG----G-AAA-GTAACT-A-CACCCTCAC-GA---------------AAA--C-CTG--TCCA---CTGG-TC-AAGT-CAC-GTGT-CAC---GTCT-GAA--CAAGC-AATA--GCTCA-ACCACCATAACTTTGTGTGGGAAAATA
gi|3 : TATTTTAACATTAATTAC---T--GTAA-----A----------A-ATA--TTTTGTAAATT-A-ATTAATCTTTAGTTTA-CTTAATGTCTAGATAGTTTAGATAATTATTTA-CAAA-TTATATTTTCAGTAAAGTA-TTGTTAATAA-A----TATTCAACTCAACGCATATGTATGGATTTCTAGG-CT-TGTTTTTTAAATGATT----------GATGTTTT------------------T--GC-T----GTGT-AT-CGT------G-CTAATAATATCTATCTACAAGT------------AGAA-T--TCAA-CATT-CAA-A-T-GTTAG-C-ATA-GAAACCT--GGC-TATATAA--CT---AA--TGGAATTTT-CCATT-----AATGAA----TTAGCCACAGA---------ATAATCAAACTATA--ATTCGAATACATT-ACCAAATTGCT-GAA-----G-AT-----A---------TTTTA----TAC--TCCAA-----TCTAAACCTCGTCTC-GTCAG-TAGCACGGAAT-A-AAA-GTGACCAA-TACCCCAAT-GAAAAACT-AG--T-CGAAA--C-CTGTTTCTAT--CTGG-TCAAA-T-CACGGTGT-CAGATTGTCT-GCGTTC---C-AATC--GGTC--ACCACAAT-A-TTCG-GCGGGAAAATA
gi|4 : aa-T----GCGTTGTACGT------GGCTAATAA-------------ATCTACTACAGA--GGAA-T--TAAAACATGGCAACA-TTGTTAGGCAATGGAAAACCT--GGCATAGATAA--CT---AAGATGAA---TTTCCA-------AATGAA----T---------ACCAAAAGATATAA---AACTTAA--AT--AAACA---T-ACCAAATTGCTTGAA-----G-AT-----ATGTTTTAACTTCCAAAA-TAC--ACTGAAAAACCTAATACCGCG-CTTCGTCAG-CGGCACGGAAT-A-AAAAGTGACC-AACACCCCAA--GAAAAACT-AGAGT-C-AAA--C--TG--TCTA---CTGGCTCAAAGTACAC-GTGTGCAA---GTCTTGCG--C---C-AATC--GCCTGCACCACAATGA-TTTG-GCGGGAAAATAatagataatttatgggaaattataaaatgaaattaactcaacacgtgacgcttttaaatagtttctaatttaagatatttgtaaaactttttataaa
gi|5 : AAT---TATTACCTTCATAAA-CATACATGTATTTCTACGTATTTTCGCAATA--TAG--------AA-----ATAGCT---TAA-ATTTGATTTATAAA-----GTGA--TCTCCG---A-ATTAAT---CA---A-TTA---------TTTA-CAGA-TGATATTTACGG-AA-CTA-A-GTTAAAAATA----T--TCAACTTACCAAA-AT-TATG-----C-----CT-T----------T--TT----------GATGTTTAC-A--------T----C-T--TTAT----ACAT-GT-TGT------G-CTAATTA-------------CT------------A----T--TATA-------GA-A-TTGTTAG-CTATAATAAACC----AC-TA-ATGAGTCTTCAAA--TGAA---TA-CCATT-----T-TGAA----G---------A---------ATAA-----CTTAA--AGTCAAACA---T-ACCCAAATACT-GAA---T-ACATATTAAA------AAATCCTG-----AC--TC-------CTTTAAAT-----TTA-TTCAG-TGGCACGGGAC-A-AAA-GTAATC----------------------GG--T-C-AAA-------------------G-TCA-------C-GTGT-C-A---CTCT-AAA--T---C-AATC--GCT-----CACAATAATTTTG-GCGGGAAAATAagatattttaaaaacgcgaaaataaagaaaaaaattctgaacacggacgctttaattatattttctaattaaagaatatttgtaaaacct
gi|6 : CAAATTGCTTGAA-----G-AT-----ATTT---AACTCCAAAACACAC--TCAAAAAA-CTCTAA-CGTCG-CTCCGTCAG-CGGCACGGAAT-ATAAA-GTGACC-A-CACCCCAA--GAAAAACT-AG--TCC-AAA--C-CTG--TCTA---CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCA--C---CAAATC---CTCA-ACCACAATA---TTG-GC-GGAAAATAg
gi|7 : aatctaTGTATTAGTGGTCAAACAGCTTGCAAA-TGATTGCGGGT-TGTTTTAATTTTC-------GTGGAAAAGACATCCCCGAACTGGCGAAT-T--GGCCGAAATTAAAAC-AC-GCAATC-TTTCCCGCCCATTTACAGTG-GACTT---GCTCAAGTGGATAGTGTTC-----------GCAAATA-TTCT--TTAGTT--GGAGCA--TAAGCCT--GTAACTTATACAGTC---TAACAGT--ATT--TCAATA-A-GTC---TTTCAG---ATAATAAT---CA-------AAAAT-----TTCATCAGT-T-Agtaatcacagaaaataagaaaaaaactcaaacacggcgcttttaaatattttctaattaaagatatttgtaaaactttttat
gi|8 : AAATCAAATTTTTATATCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGAAAAATGATTAGGG-T-TGTTTTAATTT-A-------GCGGAAAAT---TCCCCGACC--GCAA--AT--AGT-GAAATTAAAAACAGCGa
gi|9 : aggatgattttaggtggaacatactgtaagtggttataagtttgcggtgttaaaagtttgtagcttttaatattggtctaattacggtgattttattttcgtggGT-GAAATTAAAACCACCGCA
gi|9 : gtttttattttcccagtgctaaaattcgcgattttactatatttggatctaaaAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-C-------GCacaaatcaaatttcatgttaaacacatatattgtttcagagttgcaaaatgattgcagttgttttaattccgcaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAAATAAAGAAAAAAACTCAACACGGACGCTTTTAAATATTTTCTAATTAAAGATATTTGTAAAACTTTTAT
Alignments
lowQualScore : 1 44444444 1111111 111111 111 11 111 111 55555555555 11 11 444444444444444444444444444444444 11111 1111 11111 7777777777777777777777 111 2222222222 4444444444444444444444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 1 111 2222222 111 8888888888888888888888888888888888888888888888888888888 11 222 1 999999999999999999999999999999999999999999999999 222 111111 111 22222222222222222222 1111111111 111 111111 222 222
lowQualScore : 0 11111111 5 5 66 5 5 8 4 4444444 777777 77 1 77 4 3 444 00 8 4 777 0 0 3 444 7 0 77777777777 7 7 2 3 5 00 11 222222222222222222222222222222222 88 33333 1111 333 66666 4444444444444444444444 8 6 0 8 222 1111111111 1 8 8 1 6 6 6 9999999999999999999999999 9999999999999999999999999999999999999999999999999999999999999999999999999999999999 8 11 8 8 8 8 0 8 5 0 3 111 8 5 0 3333333 111 6666666666666666666666666666666666666666666666666666666 1 11 11 222 3 3 111111111111111111111111111111111111111111111111 1 6 222 6 0 444444 6 1 222 66666666666666666666 99 5555555555 6 7 2 6 6 6 111 6 333333 6 99 333 222 6
lowQualScore : . ........ . . .. . . . . ....... ...... .. . .. . . ... .. . . ... . . . ... . . ........... . . . . . .. .. ................................. .. ..... .... ... ..... ...................... . . . . ... .......... . . . . . . . ......................... .................................................................................. . .. . . . . . . . . . ... . . . ....... ... ....................................................... . .. .. ... . . ................................................ . . ... . . ...... . . ... .................... .. .......... . . . . . . ... . ...... . .. ... ... .
lowQualScore : 0 55555555 0 0 99 0 0 9 4 4444444 666666 99 7 99 4 8 000 88 0 2 555 8 8 8 000 0 2 00000000000 0 0 5 2 6 66 00 888888888888888888888888888888888 88 66666 0000 222 00000 8888888888888888888888 0 0 8 0 222 4444444444 0 0 0 0 7 7 7 7777777777777777777777777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 00 0 0 0 0 8 0 8 8 8 888 0 0 8 8888888 888 8888888888888888888888888888888888888888888888888888888 4 00 88 000 5 3 555555555555555555555555555555555555555555555555 8 7 555 7 7 222222 7 0 555 00000000000000000000 22 8888888888 7 3 5 7 7 7 777 7 555555 7 22 888 333 7
consensus : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----A-CA-ACAAATATTTCTACTTATTTTCGCAATA--TAA---T--GTAA-----ACAGTT---TAA-ACT--ATTT-ATAAATT-A-GTNAATTNTCAG---A-ATTAAT---CA---AGTTAAAAT-----TTTA-CAGATTATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTTACCAAA-AT-TATGGACT-CTAGG-CC-T----------T--TT----------GATGTTTTA-A--------T----C-T--TN-T----GCGT-GT-CGT------G-CTAATAA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA--CT---AA--TGAA---TT-CCATT-----AATGAA----T---------A---------ATAA---AACTTAA--ANTCAAACA---TACCAAATTGCT-GAA---T-G-AT-----A------AACTCCTAA---TAC--TCCGA----CTTTAAACCTCG-CT-C-GTCA-GCGGCACGG-AATA-AAA-GTGACC-A-CACCCCAAC-GAAAAAC-TAG--T-C--AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
Reference ( family-477 ) : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----A-CA-ACAAATATTTCTACTTATTTTCGCAATA--TAA---T--GTAA-----ACAGTT---TAA-ACT--ATTT-ATAAATT-A-GTNAATTNTCAG---A-ATTAAT---CA---AGTTAAAAT-----TTTA-CAGATTATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTTACCAAA-AT-TATGGACT-CTAGG-CC-T----------T--TT----------GATGTTTTA-A--------T----C-T--TN-T----GCGT-GT-CGT------G-CTAATAA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA--CT---AA--TGAA---TT-CCATT-----AATGAA----T---------A---------ATAA---AACTTAA--ANTCAAACA---TACCAAATTGCT-GAA---T-G-AT-----A------AACTCCTAA---TAC--TCCGA----CTTTAAACCTCG-CT-C-GTCA-GCGGCACGG-AATA-AAA-GTGACC-A-CACCCCAAC-GAAAAAC-TAG--T-C--AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
gi|1 : TACA-TA-TGCGTTGAGTTGAA-----TATT-TATT-----A----ACAA-TACTT-TACTGA------AAATA--TAA---TTTGTAA-----ATAATTATCTAA-ACT--ATCT-AGACATT-AAGTAAACTA--AA---G-ATTAAT---TA---A-------------TTTA-CAAAATATTTTTACAGTAA-TTAAT-GTTAAAA-------TATTCACATCACCAAA-AT-TATGGACT-CTAGG-CCCT----------T--TT----------TATTTTTTA-AATGAACTTTGACAC-T--TG-TTATTGCGA-TT-CGTTTAGTTG-CTA-TAA-------------ATCTAAACATACAAAGAAATCATAAA-CATG-CAA-AATTGTTAG-C-A-AAGAAACCTTCGGC-TAGATAA--CTA--AA--TGAA---T----ATTTAAAAAATGAAATACC---------A---------AAAA---GAATAAATTAATCAAACAT--TACCAAATTGTA-GAAGATT-A-AT-----A------AACTCC-AA----AC--TCCA---------AAACCTCG-CT-CAGTCAGGTAGCACGGCACCATAAA-GTGA-C-A-CACCCCAACAGAAAAACTTAG--T-CAAAAACACTGC-TCTATAA-CTGG-TC-AAGT-CAG-ATGT-CAA---GTCT-GCG--C---C-AATCGAGCTC--ACCACAA-A---TTG-CCGGGAAAATA
gi|10 : caTATT-GTG-TTA--CAC-TTGCAAAATGATTGCGG-T-TGTTTTAAATT-C-------GTGGAAAAT-----GCCGACT--GCGAACAT--AGC-GAATTTAAAACCACCACATTAATTTCCC---CATTTACAGTAGTACgtttaattattgaagaaataaagaaaaaaatcaacaacggacgctttaaatagtttcctaattaaggatattttttggttaaaactttttattaa
gi|11 : accGT-GAAATTAAAACCACCGCAcagtatacatgtatccattctcttagatt
gi|11 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaaAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-C-------GCacaaatcaaatttcatgttaaacacatatattgtttcagagttgcaaaatgattgcagttgttttaattccgca
gi|12 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaatgcggtggttttaatttcacac-TGTTTTAATTT-C-------GTGGAAAAA---TCCCCGACC--ACGAACAT--AGC-GAAATTAAAACCACTGCTACCATTTCCC---CATTCAa
gi|13 : ATGGACT-CTAGG-CT-T----------T--TTTTAAACGATCGATGTTTTA-A--------T----A-C--TT-T----GCGT-GTACGT------A-CTAATAA-------------AT------------tttttactttcctgtttactttatagaatgaacatttgttatt
gi|14 : -----CATGTATT-GCG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-CCTCATTTACAGTACAT--------GACC---CAAACTT--GGC-AAAATctacaaattgcttgaagatatttaactccaa
gi|15 : AAAAA---TACCCGACA--GTGAACATATGGC-GCAATTAAAACCCCCGCAACCATTTCCT---CATTTACATTA-TATAT---AGTTATAT---TA
gi|17 : TTACATTAA-TTA-T-GTTTAAAATA----T--TCAACTTAACAAA-AT-TATGGACT-CTAGG-CC-T----------T--TTAC--------GATGTTTTA-
gi|18 : GTATT-GTG-TCA--CAC-TTGC-AAATGA-TGCGG-TCTGTTTTAATTT-C-------G
gi|2 : AATTCAAATTTT-ATGACAAATATATACATACATGTATT-GTG-TCA--TAC-TTGCAAAATGATTGCAG-TGTGTTTTAATTT-C-------GCGGAAAAT---TCCCC-ACC--GCGAACAT--GGC-AAAATTAAAGCAACCGCAATCGTTTCCC---CATTTAC--TA-TACAT---GTTTAAAT---TATTATCTT-----AACA-ACAAATATTTCTACTTATTTTCGCAATA--TAA--------AA-----ACAGTT---TAA-AC---ACTT-ATAAATTTA-GTTAATTATTAG---A-ATTAAT---CA---AGTTAAAATCT---TTTA-CAGTTTGTATTTACATTAA-TTA-T-GTTAAAAATACATGTATTCATCTTACCAAA-AT-TATGAACC-CTAGTTCC-T----------T--TT----------GATATTTTACA--------T----CGTAATG-T----GTGT-GT-TGT------G-CTAATTA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAA-CTATAAGAAACCT--GGC-TAGA----------AA----AA---T--CTA-------AATGAA----T---------A---------A--------CTTAA--AGTCAAGCA---TACCAAA-TGCT-GAA---TCA-AT-----A------AAACCCTAA---TACAGTCCGAT---CTTCAGACTTCA-CT-A-TTCA-ATGACACAG----G-AAA-GTAACT-A-CACCCTCAC-GA----------------AAAC-CTG--TCC---A-CTGG-TC-AAGT-CAC-GTGT-CAC---GTCT-GAA--CAAGC-AATA--GCTCA-ACCACCATAACTTTGTGTGGGAAAATA
gi|3 : TATTTTAACATTAATTAC---T--GTAA-----A----------A-A-T--ATTTTGTAAATT-A-ATTAATCTTTAGTTTA-CTTAATGTCTAGATAGTTTAGATAATTATTTA-CAAATTATATTTTCAGTAAAGTA-TTGTTAATAA-A----TATTCAACTCAACGCATATGTATGGATTTCTAGG-CT-TGTTTTTTAAATGATT----------GATGTTTT------------------T--GC-T----GTGT-AT-CGT------G-CTAATAATATCTATCTACAAGT------------AGAA-T--TCAA-CATT-CAA-A-T-GTTAG-C-ATA-GAAACCT--GGC-TATATAA--CT---AA--TGGAATTTT-CCATT-----AATGAA----TTAGCCACAGA---------ATAATCAAACTATA--ATTCGAATACATTACCAAATTGCT-GAA-----G-AT-----A---------TTTTA----TAC--TCCAA-----TCTAAACCTCGTCT-C-GTCA-GTAGCACGG-AATA-AAA-GTGACCAA-TACCCCAAT-GAAAAAC-TAG--T-CG-AAAC-CTGTTTCT---ATCTGG-TCAAA-T-CACGGTGT-CAGATTGTCT-GCGTTC---C-AATC--GGTC--ACCACAAT-A-TTCG-GCGGGAAAATA
gi|4 : aa-T----GCGTTGTACGT------GGCTAATAA-------------ATCTACTACAGA--GGAA-T--TAAAACATGGCAACA-TTGTTAGGCAATGGAAAACCT--GGCATAGATAA--CT---AAGATGAA---TTTCCA-------AATGAA----T---------ACCAAAAGATATAA---AACTTAA--AT--AAACA---TACCAAATTGCTTGAA-----G-AT-----ATGTTTTAACTTCCAAAA-TAC--ACTGAAAAACCTAATACCGCG-CTTC-GTCA-GCGGCACGG-AATA-AAAAGTGACC-AACACCCCAA--GAAAAAC-TAGAGT-C--AAAC--TG--TCT---A-CTGGCTCAAAGTACAC-GTGTGCAA---GTCTTGCG--C---C-AATC--GCCTGCACCACAATGA-TTTG-GCGGGAAAATAatagataatttatgggaaattataaaatgaaattaactcaacacgtgacgcttttaaatagtttctaatttaagatatttgtaaaactttttataaa
gi|5 : AAT---TATTACCTTCATAAA-CATACATGTATTTCTACGTATTTTCGCAATA--TAG--------AA-----ATAGCT---TAA-ATTTGATTT-ATAAA-----GTGA--TCTCCG---A-ATTAAT---CA---A-TTA---------TTTA-CAGATGATATTTACGG-AA-CTA-A-GTTAAAAATA----T--TCAACTTACCAAA-AT-TATG-----C-----CT-T----------T--TT----------GATGTTTAC-A--------T----C-T--TTAT----ACAT-GT-TGT------G-CTAATTA-------------CT------------A----T--TATA-------GA-A-TTGTTAG-CTATAATAAACC----AC-TA-ATGAGTCTTCAAA--TGAA---TA-CCATT-----T-TGAA----G---------A---------ATAA-----CTTAA--AGTCAAACA---TACCCAAATACT-GAA---T-ACATATTAAA------AAATCCTG-----AC--TC-------CTTTAAATTT---AT----TCA-GTGGCACGG-GACA-AAA-GTAATC----------------------GG--T-C--AAA------------------G-TCA-------C-GTGT-C-A---CTCT-AAA--T---C-AATC--GCT-----CACAATAATTTTG-GCGGGAAAATAagatattttaaaaacgcgaaaataaagaaaaaaattctgaacacggacgctttaattatattttctaattaaagaatatttgtaaaacct
gi|6 : CAAATTGCTTGAA-----G-AT-----ATTT---AACTCCAAAACACAC--TCAAAAAA-CTCTAA-CGTCG-CT-CCGTCA-GCGGCACGG-AATATAAA-GTGACC-A-CACCCCAA--GAAAAAC-TAG--TCC--AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCA--C---CAAATC---CTCA-ACCACAATA---TTG-GC-GGAAAATAg
gi|7 : aatctaTGTATTAGTGGTCAAACAGCTTGCAAA-TGATTGCGGGT-TGTTTTAATTTTC-------GTGGAAAAGACATCCCCGAACTGGCGAAT-T--GGCCGAAATTAAAAC-AC-GCAATC-TTTCCCGCCCATTTACAGTG-GACTT---GCTCAAGTGGATAGTGTTC-----------GCAAATA-TTCT--TTAGTT--GGAGCA--TAAGCCT--GTAACTTATACAGTC---TAACAGT--ATT---TCAATA-A-GTC---TTTCAG---ATAATAAT---CA-------AAAAT-----TTCATCAG-TTAgtaatcacagaaaataagaaaaaaactcaaacacggcgcttttaaatattttctaattaaagatatttgtaaaactttttat
gi|8 : AAATCAAATTTTTATATCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGAAAAATGATTAGGG-T-TGTTTTAATTT-A-------GCGGAAAAT---TCCCCGACC--GCAA--AT--AGT-GAAATTAAAAACAGCGa
gi|9 : aggatgattttaggtggaacatactgtaagtggttataagtttgcggtgttaaaagtttgtagcttttaatattggtctaattacggtgattttattttcgtggGT-GAAATTAAAACCACCGCA
gi|9 : gtttttattttcccagtgctaaaattcgcgattttactatatttggatctaaaAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-C-------GCacaaatcaaatttcatgttaaacacatatattgtttcagagttgcaaaatgattgcagttgttttaattccgcaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAAATAAAGAAAAAAACTCAACACGGACGCTTTTAAATATTTTCTAATTAAAGATATTTGTAAAACTTTTAT
Alignments
lowQualScore : 1 44444444 1111111 111111 111 11 111 111 55555555555 11 11 444444444444444444444444444444444 11111 1111 11111 7777777777777777777777 111 2222222222 4444444444444444444444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 1 111 2222222 111 8888888888888888888888888888888888888888888888888888888 11 222 1 999999999999999999999999999999999999999999999999 222 111111 111 22222222222222222222 1111111111 111 111111 222 222
lowQualScore : 0 11111111 5 5 66 5 5 8 4 4444444 777777 77 1 77 4 3 444 00 8 4 777 0 0 3 444 7 0 77777777777 7 7 2 3 5 00 11 222222222222222222222222222222222 88 33333 1111 333 66666 4444444444444444444444 8 6 0 8 222 1111111111 1 8 8 1 6 6 6 9999999999999999999999999 9999999999999999999999999999999999999999999999999999999999999999999999999999999999 8 11 8 8 8 8 0 8 5 0 3 111 8 5 0 3333333 111 6666666666666666666666666666666666666666666666666666666 1 11 11 222 3 3 111111111111111111111111111111111111111111111111 1 6 222 6 0 444444 6 1 222 66666666666666666666 99 5555555555 6 7 2 6 6 6 111 6 333333 6 99 333 222 6
lowQualScore : . ........ . . .. . . . . ....... ...... .. . .. . . ... .. . . ... . . . ... . . ........... . . . . . .. .. ................................. .. ..... .... ... ..... ...................... . . . . ... .......... . . . . . . . ......................... .................................................................................. . .. . . . . . . . . . ... . . . ....... ... ....................................................... . .. .. ... . . ................................................ . . ... . . ...... . . ... .................... .. .......... . . . . . . ... . ...... . .. ... ... .
lowQualScore : 0 55555555 0 0 99 0 0 9 4 4444444 666666 99 7 99 4 8 000 88 0 2 555 8 8 8 000 0 2 00000000000 0 0 5 2 6 66 00 888888888888888888888888888888888 88 66666 0000 222 00000 8888888888888888888888 0 0 8 0 222 4444444444 0 0 0 0 7 7 7 7777777777777777777777777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 00 0 0 0 0 8 0 8 8 8 888 0 0 8 8888888 888 8888888888888888888888888888888888888888888888888888888 4 00 88 000 5 3 555555555555555555555555555555555555555555555555 8 7 555 7 7 222222 7 0 555 00000000000000000000 22 8888888888 7 3 5 7 7 7 777 7 555555 7 22 888 333 7
consensus : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----A-CA-ACAAATATTTCTACTTATTTTCGCAATA--TAA---T--GTAA-----ACAGTT---TAA-ACT--ATTT-ATAAATT-A-GTNAATTNTCAG---A-ATTAAT---CA---AGTTAAAAT-----TTTA-CAGATTATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTTACCAAA-AT-TATGGACT-CTAGG-CC-T----------T--TT----------GATGTTTTA-A--------T----C-T--TN-T----GCGT-GT-CGT------G-CTAATAA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA--CT---AA--TGAA---TT-CCATT-----AATGAA----T---------A---------ATAA---AACTTAA--ANTCAAACA---TACCAAATTGCT-GAA---T-G-AT-----A------AACTCCTAA---TAC--TCCGA----CTTTAAACCTCG-CT-C-GTCA-GCGGCACGG-AATA-AAA-GTGACC-A-CACCCCAAC-GAAAAAC-TAG--T-C--AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
Reference ( family-477 ) : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----A-CA-ACAAATATTTCTACTTATTTTCGCAATA--TAA---T--GTAA-----ACAGTT---TAA-ACT--ATTT-ATAAATT-A-GTNAATTNTCAG---A-ATTAAT---CA---AGTTAAAAT-----TTTA-CAGATTATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTTACCAAA-AT-TATGGACT-CTAGG-CC-T----------T--TT----------GATGTTTTA-A--------T----C-T--TN-T----GCGT-GT-CGT------G-CTAATAA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA--CT---AA--TGAA---TT-CCATT-----AATGAA----T---------A---------ATAA---AACTTAA--ANTCAAACA---TACCAAATTGCT-GAA---T-G-AT-----A------AACTCCTAA---TAC--TCCGA----CTTTAAACCTCG-CT-C-GTCA-GCGGCACGG-AATA-AAA-GTGACC-A-CACCCCAAC-GAAAAAC-TAG--T-C--AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
gi|1 : TACA-TA-TGCGTTGAGTTGAA-----TATT-TATT-----A----ACAA-TACTT-TACTGA------AAATA--TAA---TTTGTAA-----ATAATTATCTAA-ACT--ATCT-AGACATT-AAGTAAACTA--AA---G-ATTAAT---TA---A-------------TTTA-CAAAATATTTTTACAGTAA-TTAAT-GTTAAAA-------TATTCACATCACCAAA-AT-TATGGACT-CTAGG-CCCT----------T--TT----------TATTTTTTA-AATGAACTTTGACAC-T--TG-TTATTGCGA-TT-CGTTTAGTTG-CTA-TAA-------------ATCTAAACATACAAAGAAATCATAAA-CATG-CAA-AATTGTTAG-C-A-AAGAAACCTTCGGC-TAGATAA--CTA--AA--TGAA---T----ATTTAAAAAATGAAATACC---------A---------AAAA---GAATAAATTAATCAAACAT--TACCAAATTGTA-GAAGATT-A-AT-----A------AACTCC-AA----AC--TCCA---------AAACCTCG-CT-CAGTCAGGTAGCACGGCACCATAAA-GTGA-C-A-CACCCCAACAGAAAAACTTAG--T-CAAAAACACTGC-TCTATAA-CTGG-TC-AAGT-CAG-ATGT-CAA---GTCT-GCG--C---C-AATCGAGCTC--ACCACAA-A---TTG-CCGGGAAAATA
gi|10 : caTATT-GTG-TTA--CAC-TTGCAAAATGATTGCGG-T-TGTTTTAAATT-C-------GTGGAAAAT-----GCCGACT--GCGAACAT--AGC-GAATTTAAAACCACCACATTAATTTCCC---CATTTACAGTAGTACgtttaattattgaagaaataaagaaaaaaatcaacaacggacgctttaaatagtttcctaattaaggatattttttggttaaaactttttattaa
gi|11 : accGT-GAAATTAAAACCACCGCAcagtatacatgtatccattctcttagatt
gi|11 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaaAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-C-------GCacaaatcaaatttcatgttaaacacatatattgtttcagagttgcaaaatgattgcagttgttttaattccgca
gi|12 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaatgcggtggttttaatttcacac-TGTTTTAATTT-C-------GTGGAAAAA---TCCCCGACC--ACGAACAT--AGC-GAAATTAAAACCACTGCTACCATTTCCC---CATTCAa
gi|13 : ATGGACT-CTAGG-CT-T----------T--TTTTAAACGATCGATGTTTTA-A--------T----A-C--TT-T----GCGT-GTACGT------A-CTAATAA-------------AT------------tttttactttcctgtttactttatagaatgaacatttgttatt
gi|14 : -----CATGTATT-GCG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-CCTCATTTACAGTACAT--------GACC---CAAACTT--GGC-AAAATctacaaattgcttgaagatatttaactccaa
gi|15 : AAAAA---TACCCGACA--GTGAACATATGGC-GCAATTAAAACCCCCGCAACCATTTCCT---CATTTACATTA-TATAT---AGTTATAT---TA
gi|17 : TTACATTAA-TTA-T-GTTTAAAATA----T--TCAACTTAACAAA-AT-TATGGACT-CTAGG-CC-T----------T--TTAC--------GATGTTTTA-
gi|18 : GTATT-GTG-TCA--CAC-TTGC-AAATGA-TGCGG-TCTGTTTTAATTT-C-------G
gi|2 : AATTCAAATTTT-ATGACAAATATATACATACATGTATT-GTG-TCA--TAC-TTGCAAAATGATTGCAG-TGTGTTTTAATTT-C-------GCGGAAAAT---TCCCC-ACC--GCGAACAT--GGC-AAAATTAAAGCAACCGCAATCGTTTCCC---CATTTAC--TA-TACAT---GTTTAAAT---TATTATCTT-----AACA-ACAAATATTTCTACTTATTTTCGCAATA--TAA--------AA-----ACAGTT---TAA-AC---ACTT-ATAAATTTA-GTTAATTATTAG---A-ATTAAT---CA---AGTTAAAATCT---TTTA-CAGTTTGTATTTACATTAA-TTA-T-GTTAAAAATACATGTATTCATCTTACCAAA-AT-TATGAACC-CTAGTTCC-T----------T--TT----------GATATTTTACA--------T----CGTAATG-T----GTGT-GT-TGT------G-CTAATTA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAA-CTATAAGAAACCT--GGC-TAGA----------AA----AA---T--CTA-------AATGAA----T---------A---------A--------CTTAA--AGTCAAGCA---TACCAAA-TGCT-GAA---TCA-AT-----A------AAACCCTAA---TACAGTCCGAT---CTTCAGACTTCA-CT-A-TTCA-ATGACACAG----G-AAA-GTAACT-A-CACCCTCAC-GA----------------AAAC-CTG--TCC---A-CTGG-TC-AAGT-CAC-GTGT-CAC---GTCT-GAA--CAAGC-AATA--GCTCA-ACCACCATAACTTTGTGTGGGAAAATA
gi|3 : TATTTTAACATTAATTAC---T--GTAA-----A----------A-A-T--ATTTTGTAAATT-A-ATTAATCTTTAGTTTA-CTTAATGTCTAGATAGTTTAGATAATTATTTA-CAAATTATATTTTCAGTAAAGTA-TTGTTAATAA-A----TATTCAACTCAACGCATATGTATGGATTTCTAGG-CT-TGTTTTTTAAATGATT----------GATGTTTT------------------T--GC-T----GTGT-AT-CGT------G-CTAATAATATCTATCTACAAGT------------AGAA-T--TCAA-CATT-CAA-A-T-GTTAG-C-ATA-GAAACCT--GGC-TATATAA--CT---AA--TGGAATTTT-CCATT-----AATGAA----TTAGCCACAGA---------ATAATCAAACTATA--ATTCGAATACATTACCAAATTGCT-GAA-----G-AT-----A---------TTTTA----TAC--TCCAA-----TCTAAACCTCGTCT-C-GTCA-GTAGCACGG-AATA-AAA-GTGACCAA-TACCCCAAT-GAAAAAC-TAG--T-CG-AAAC-CTGTTTCT---ATCTGG-TCAAA-T-CACGGTGT-CAGATTGTCT-GCGTTC---C-AATC--GGTC--ACCACAAT-A-TTCG-GCGGGAAAATA
gi|4 : aa-T----GCGTTGTACGT------GGCTAATAA-------------ATCTACTACAGA--GGAA-T--TAAAACATGGCAACA-TTGTTAGGCAATGGAAAACCT--GGCATAGATAA--CT---AAGATGAA---TTTCCA-------AATGAA----T---------ACCAAAAGATATAA---AACTTAA--AT--AAACA---TACCAAATTGCTTGAA-----G-AT-----ATGTTTTAACTTCCAAAA-TAC--ACTGAAAAACCTAATACCGCG-CTTC-GTCA-GCGGCACGG-AATA-AAAAGTGACC-AACACCCCAA--GAAAAAC-TAGAGT-C--AAAC--TG--TCT---A-CTGGCTCAAAGTACAC-GTGTGCAA---GTCTTGCG--C---C-AATC--GCCTGCACCACAATGA-TTTG-GCGGGAAAATAatagataatttatgggaaattataaaatgaaattaactcaacacgtgacgcttttaaatagtttctaatttaagatatttgtaaaactttttataaa
gi|5 : AAT---TATTACCTTCATAAA-CATACATGTATTTCTACGTATTTTCGCAATA--TAG--------AA-----ATAGCT---TAA-ATTTGATTT-ATAAA-----GTGA--TCTCCG---A-ATTAAT---CA---A-TTA---------TTTA-CAGATGATATTTACGG-AA-CTA-A-GTTAAAAATA----T--TCAACTTACCAAA-AT-TATG-----C-----CT-T----------T--TT----------GATGTTTAC-A--------T----C-T--TTAT----ACAT-GT-TGT------G-CTAATTA-------------CT------------A----T--TATA-------GA-A-TTGTTAG-CTATAATAAACC----AC-TA-ATGAGTCTTCAAA--TGAA---TA-CCATT-----T-TGAA----G---------A---------ATAA-----CTTAA--AGTCAAACA---TACCCAAATACT-GAA---T-ACATATTAAA------AAATCCTG-----AC--TC-------CTTTAAATTT---AT----TCA-GTGGCACGG-GACA-AAA-GTAATC----------------------GG--T-C--AAA------------------G-TCA-------C-GTGT-C-A---CTCT-AAA--T---C-AATC--GCT-----CACAATAATTTTG-GCGGGAAAATAagatattttaaaaacgcgaaaataaagaaaaaaattctgaacacggacgctttaattatattttctaattaaagaatatttgtaaaacct
gi|6 : CAAATTGCTTGAA-----G-AT-----ATTT---AACTCCAAAACACAC--TCAAAAAA-CTCTAA-CGTCG-CT-CCGTCA-GCGGCACGG-AATATAAA-GTGACC-A-CACCCCAA--GAAAAAC-TAG--TCC--AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCA--C---CAAATC---CTCA-ACCACAATA---TTG-GC-GGAAAATAg
gi|7 : aatctaTGTATTAGTGGTCAAACAGCTTGCAAA-TGATTGCGGGT-TGTTTTAATTTTC-------GTGGAAAAGACATCCCCGAACTGGCGAAT-T--GGCCGAAATTAAAAC-AC-GCAATC-TTTCCCGCCCATTTACAGTG-GACTT---GCTCAAGTGGATAGTGTTC-----------GCAAATA-TTCT--TTAGTT--GGAGCA--TAAGCCT--GTAACTTATACAGTC---TAACAGT--ATT---TCAATA-A-GTC---TTTCAG---ATAATAAT---CA-------AAAAT-----TTCATCAG-TTAgtaatcacagaaaataagaaaaaaactcaaacacggcgcttttaaatattttctaattaaagatatttgtaaaactttttat
gi|8 : AAATCAAATTTTTATATCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGAAAAATGATTAGGG-T-TGTTTTAATTT-A-------GCGGAAAAT---TCCCCGACC--GCAA--AT--AGT-GAAATTAAAAACAGCGa
gi|9 : aggatgattttaggtggaacatactgtaagtggttataagtttgcggtgttaaaagtttgtagcttttaatattggtctaattacggtgattttattttcgtggGT-GAAATTAAAACCACCGCA
gi|9 : gtttttattttcccagtgctaaaattcgcgattttactatatttggatctaaaAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-C-------GCacaaatcaaatttcatgttaaacacatatattgtttcagagttgcaaaatgattgcagttgttttaattccgcaa
blockSeqs : T TATACATA A G AA C G C T CTCATTT GACATC TG A AT C A GCC AG G A . A GGA A TCATAAACAT A T C A T TC AT GCCTGTAACTTATACAGTCTAACAGT TT TTTA TAAT ATT TTTA GTCTAGATAGTTTAGATAATTA T T A TT ATACATGTAT A T G G T T . GTTTTTTAAATGATT TGCTGTGTATCGTGCTAATAATATCTATCTACAAGT . . A G C . G T A T A G GTCTTCA GAT ATTTTCCATTAATGAATTAGCCACAGAATAATCAAA T . GT CAT T T GATATGTTTTAACTTCCAAAATACACTGAAAAAC C T TC . AATAT A C AA TGAAAAACTAGTCG C TTTCTAT C A G A G G ATT T CAAG A . TGC AAC T
blockSeqs : . TAT . . . . . G . . ATC . T . . A . AT . A . A . A TAACA G T C A T TA . AAATAGCTTAAATTTG T TTA TAAT TTT AT CAAGTTAAAATCT . A . T AATAT T . . G . . . TTTTTAAACGATC ACATCGTAATGTGTGTGTTGTGCTAATTAAT . . . . . . . A G T . T CT T TTTCCAAATGAATACCAAAAGATATAAAA A . TT . T T GATATTTAACTCCAAAACACACTCAAAAAAC T . CC . AATA . C AA GAAAAACTAGAGTC C TCCA . A G . . . . . TTC . . CA AAT .
blockSeqs : . . . . . . . . . . ATA . A . . G . AG . T . A . G . A . C . T TC . AAACAGTTTAAAC T TAA GA CTC A CAAAAAT . A . T ATAT A . . A . . . TTTAC AATACTTTGCGTGTACGTACTAATAAAT . . . . . . . T A T . G CT T TACCATTTTGAAGAATAA T . GT . A . TCAATAAAACCCTAATACAGTCCGATC A . A . AATA . C A GAAAAACTAGTCC C TCTA . A G . . . . . C . . CA GA .
blockSeqs : . . . . . . . . TTC . A . . . . . . G . G . . TGTAAAAAT . . C TTC A CAATTA . . . A ATAT A . . G . . . TTT CATCTTTATACATGTTGTGCTAATTACT . . . . . . . . . . . . . . TCTAAATGAATAA T . T . T . TACATATTAAAAAATCCTGACTCC T . C . GACA . T A GGTC . TCTA . A . . . . . . T . . C A .
blockSeqs : . . . . . . . . TTC . A . . . . . . TTT . . GATATTTTATACTCCAA T . . . G . C . CGA . . . . . . . . . . C . . . A .
blockSeqs : . . . . . . . . T . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : NTC*** AG TC CAAACAGCCTAAAT******************* TA*** TTC CAATTAGAA************* T** ATAT****** ** T** CT***** ** *** GATATGTTAACTCCAAAATACACTCGAC******************** CC* AATA** GAAAAACTAGTC******** C* TCTA****** ** CG*
originalCons : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAAT---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----A-CA-ACAAATATTTCTACTTATTTTCGCAATA--TAA---T--GTAA-----ACAGTT---TAA-ACT--ATTT-ATAAATT-A-GTNAATTNTCAG---A-ATTAAT---CA---AGTTAAAAT-----TTTA-CAGATTATATTTACAGTAA-TTA-T-GTTAAAAATA----TATTCAACTTACCAAA-AT-TATGGACT-CTAGG-CC-T----------T--TT----------GATGTTTTA-A--------T----C-T--TN-T----GCGT-GT-CGT------G-CTAATAA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA--CT---AA--TGAA---TT-CCATT-----AATGAA----T---------A---------ATAA---AACTTAA--ANTCAAACA---TACCAAATTGCT-GAA---T-G-AT-----A------AACTCCTAA---TAC--TCCGA----CTTTAAACCTCG-CT-C-GTCA-GCGGCACGG-AATA-AAA-GTGACC-A-CACCCCAAC-GAAAAAC-TAG--T-C--AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
finalCons : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-------GCGGAAAANTC---CCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----A-CA-ACAAATATTTCTACTTATTTTCGCAATA--TAACAAACAGCCTAAAT-------------------ATTT-ATAAATA---GTNAATTTTCAG---A-ATTAATCAATTAGAA-------------TTTA-CAGATTATATTTACAGTAA-TTAT--GTTAAAAATAT------TCAACTTACCAAA-AT-TATGGACT-CTAGG-CC-T----------T--TT----------GATGTTTTA-A--------T----C-T--TN-T----GCGT-GT-CGT------G-CTAATAA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAACT-----AA--TGAA---TT-CCATT-----AATGAA----T---------A---------ATAA---AACTTAA--ANTCAAACA---TACCAAATTGCT-GAAGATATGTTAACTCCAAAATACACTCGAC--------------------TTTAAACCTCG-CTCC-GTCA-GCGGCACGGAATA--AAA-GTGACC-A-CACCCCAAGAAAAACTAGTC--------AAACC-TGTCTA------CTGG-TCAAAGT-CAC-GTGT-CAA---GTCT-GCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAAATAAAGAAAAAAACTCAACACGGACGCTTTTAAATATTTTCTAATTAAAGATATTTGTAAAACTTTTAT
Alignments
lowQualScore : 1 44444444 111 1111 111 11 111 111 5555555555 2222222 111 55555 1111 11 11111 11 77777777777777777777777777777777777777777777777777777777 111 2222222 4444444444444444444444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 1 111 9999999999999999999999999999999999999999999999999999999999999999999 11 222 1 111111 6666666666666666666 111 2222222 1 111111111111111 22 11 1111111111 111 111111 222 222
lowQualScore : 0 11111111 5 5 66 5 5 8 4 000 1111 0 77 1 77 4 3 444 00 8 4 777 0 0 3 444 7 0 7777777777 7 7 2 3 3333333 00 777 44444 9999 11 66666 99 00000000000000000000000000000000000000000000000000000000 0 8 222 8 3333333 1 8 8 1 6 6 6 9999999999999999999999999 9999999999999999999999999999999999999999999999999999999999999999999999999999999999 8 11 8 8 8 8 0 8 5 0 3 111 8 5 0 8888888888888888888888888888888888888888888888888888888888888888888 3 1 11 11 222 1 7 77 888888 5 5 1111111111111111111 1 111 6 0 0000000 1 3 6 777777777777777 22 33 5555555555 6 7 2 6 6 6 111 6 333333 6 99 333 222 6
lowQualScore : . ........ . . .. . . . . ... .... . .. . .. . . ... .. . . ... . . . ... . . .......... . . . . ....... .. ... ..... .... .. ..... .. ........................................................ . . ... . ....... . . . . . . . ......................... .................................................................................. . .. . . . . . . . . . ... . . . ................................................................... . . .. .. ... . . .. ...... . . ................... . ... . . ....... . . . ............... .. .. .......... . . . . . . ... . ...... . .. ... ... .
lowQualScore : 0 55555555 0 0 99 0 0 9 4 000 0000 7 99 7 99 4 8 000 88 0 2 555 8 8 8 000 0 2 0000000000 0 0 5 2 8888888 55 555 00000 5555 00 00000 00 22222222222222222222222222222222222222222222222222222222 8 0 222 0 8888888 0 0 0 0 7 7 7 7777777777777777777777777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 00 0 0 0 0 8 0 8 8 8 888 0 0 8 6666666666666666666666666666666666666666666666666666666666666666666 8 4 00 88 000 7 1 99 444444 7 7 7777777777777777777 8 333 7 7 8888888 0 3 7 333333333333333 55 33 8888888888 7 3 5 7 7 7 777 7 555555 7 22 888 333 7
consensus : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-CGCGGA---AAAN---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----ACA-ACAAATATTTCTACTTATTT---TCGCAA---TATAACTT--AAACAGT---CTA--AA-T---ATTT--ATAAA--TT-AGTNAATTTTCAG---A-ATTAAT--CAAG-----TTAAA-----A---TTTACAGATTATATTTACAGTAA-TTA-T-GTTAA-AAA------TATTCAACTTACCAAA-AT-TATGGACT-CTAG-GCC-T----------T--TT----------GATGTTTTA-A--------T----C-T--TN-T----GCGT-GT-CGT------G-CTAATAA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA--CT---AA--TGAA---TT-CCATT-----AATGAA----T---------A---------ATA---AAACTTAA--ANTCAAACA---TACCAAATTGCTTGAA--GATAT-TT--A-ACT-CCAAAATAC--ACT-CGA----CTTTAAACCTCGCTCCGTCA-GCGGCACGG-AAT-A-AAAGTGACC-ACACCC-CA--A-GAAAAAC-T--AGTC--AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTC-TGCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
Reference ( family-477 ) : AAATCAAATTTC-ATGTCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-CGCGGA---AAAN---TCCCCGACC--GCGAACAT--GGC-GAAATTAAAACCACCGCAATCATTTCCC---CATTTACAGTA-TACGT---GTTTAAAT---TATTATCTT-----ACA-ACAAATATTTCTACTTATTT---TCGCAA---TATAAC----AAACAGC---CTA--AA-T---ATTT--ATAAA--T--AGTNAATTTTCAG---A-ATTAAT--CAA------TTAGA-----A---TTTACAGATTATATTTACAGTAA-TTA-T-GTTAA-AAA------TATTCAACTTACCAAA-AT-TATGGACT-CTAG-GCC-T----------T--TT----------GATGTTTTA-A--------T----C-T--TN-T----GCGT-GT-CGT------G-CTAATAA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAG-CTATAAGAAACCT--GGC-TAGATAA--CT---AA--TGAA---TT-CCATT-----AATGAA----T---------A---------ATA---AAACTTAA--ANTCAAACA---TACCAAATTGCT-GAA--GATATGTT--A-ACT-CCAAAATAC--ACT-CGA----CTTTAAACCTCGCTCCGTCA-GCGGCACGG-AAT-A-AAAGTGACC-ACACCC-CA--A-GAAAAAC-T--AGTC--AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTC-TGCG--C---C-AATC--GCTCG-ACCACAATAA-TTTG-GCGGGAAAATA
gi|1 : TACA-TA-TGCGTTGAGTTGAA-----TATT-TATT-----A---ACAA-TACTT-TACTGA---------AAA---TATAATTTGTAAATAATTATCTA--AACT---ATCT--AGACA--TTAAGTAAACT----A---A-A--GAT--TAA------TTA-------A---TTTACAAAATATTTTTACAGTAA-TTAAT-GTTAA-AA-------TATTCACATCACCAAA-AT-TATGGACT-CTAG-GCCCT----------T--TT----------TATTTTTTA-AATGAACTTTGACAC-T--TG-TTATTGCGA-TT-CGTTTAGTTG-CTA-TAA-------------ATCTAAACATACAAAGAAATCATAAA-CATG-CAA-AATTGTTAG-C-A-AAGAAACCTTCGGC-TAGATAA--CTA--AA--TGAA---T----ATTTAAAAAATGAAATACC---------A---------AAA---AGAATAAATTAATCAAACAT--TACCAAATTGTA-GAA--GATTAATA--A-ACT-CCAA-------ACT-CCA--------AAACCTCGCTCAGTCAGGTAGCACGGCACC-ATAAAGTGA-C-ACACCC-CAACA-GAAAAACTT--AGTCAAAAACACTGC-TCTATAA-CTGG-TC-AAGT-CAG-ATGT-CAA---GTC-TGCG--C---C-AATCGAGCTC--ACCACAA-A---TTG-CCGGGAAAATA
gi|10 : caTATT-GTG-TTA--CAC-TTGCAAAATGATTGCGG-T-TGTTTTAAATT-CGTGGA---AAAT---GCC--GACT--GCGAACAT--AGC-GAATTTAAAACCACCACATTAATTTCCC---CATTTACAGTAGTACgtttaattattgaagaaataaagaaaaaaatcaacaacggacgctttaaatagtttcctaattaaggatattttttggttaaaactttttattaa
gi|11 : accGT-GAAATTAAAACCACCGCAcagtatacatgtatccattctcttagatt
gi|11 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaaAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-CGCacaaatcaaatttcatgttaaacacatatattgtttcagagttgcaaaatgattgcagttgttttaattccgca
gi|12 : gttttattttcccagtgctaaaattcgcgattttctaatattggactaaatgcggtggttttaatttcacac-TGTTTTAATTT-CGTGGA---AAAA---TCCCCGACC--ACGAACAT--AGC-GAAATTAAAACCACTGCTACCATTTCCC---CATTCAa
gi|13 : ATGGACT-CTAG-GCT-T----------T--TTTTAAACGATCGATGTTTTA-A--------T----A-C--TT-T----GCGT-GTACGT------A-CTAATAA-------------AT------------tttttactttcctgtttactttatagaatgaacatttgttatt
gi|13 : CAAATTGCTTGAA--GATAT-TT--A-ACT-CCAActacaaattgcttgaagatatttaactccaa
gi|14 : atggactctaggctttttttaaacgatcgatgttttaatactttgcgtgtacgtactaataaatcta-----CATGTATT-GCG-TCA--CAG-TTGCAAAATGATTGCGG-T-TGTTTTAATTT-C-CTCATTTACAG---TACATGACC---CAAACTT--GGC-AAAAT
gi|15 : A---AAAA---TACCCGACA--GTGAACATATGGC-GCAATTAAAACCCCCGCAACCATTTCCT---CATTTACATTA-TATAT---AGTTATAT---TA
gi|17 : TTACATTAA-TTA-T-GTTTA-AAA------TATTCAACTTAACAAA-AT-TATGGACT-CTAG-GCC-T----------T--TTAC--------GATGTTTTA-
gi|18 : GTATT-GTG-TCA--CAC-TTGC-AAATGA-TGCGG-TCTGTTTTAATTT-CG
gi|2 : AATTCAAATTTT-ATGACAAATATATACATACATGTATT-GTG-TCA--TAC-TTGCAAAATGATTGCAG-TGTGTTTTAATTT-CGCGGA---AAAT---TCCCC-ACC--GCGAACAT--GGC-AAAATTAAAGCAACCGCAATCGTTTCCC---CATTTAC--TA-TACAT---GTTTAAAT---TATTATCTTA----ACA-ACAAATATTTCTACTTATTT---TCGCAA---TATAA-----AAACAGT---TTA--AA-C---ACTT--ATAAATTT--AGTTAATTATTAG---A-ATTAAT--CAAG-----TTAAA-----ATCTTTTACAGTTTGTATTTACATTAA-TTA-T-GTTAA-AAATACATGTATTCATCTTACCAAA-AT-TATGAACC-CTAGTTCC-T----------T--TT----------GATATTTTACA--------T----CGTAATG-T----GTGT-GT-TGT------G-CTAATTA-------------AT------------AGAA-T--TAAA-CATG-CAA-A-TTGTTAA-CTATAAGAAACCT--GGC-TAGA-AA-------AA----------T-CTA-------AATGAA----T--------------------------AACTTAA--AGTCAAGCA---TACCAAA-TGCT-GAATCAATA---A--A-ACC-CT--AATAC--AGTCCGAT---CTTCAGACTTCACTAT-TCA-ATGACACAG-----G-AAAGTAACT-ACACCCTCA--C-GA---------------AAAC-CTG--TCC---A-CTGG-TC-AAGT-CAC-GTGT-CAC---GTC-TGAA--CAAGC-AATA--GCTCA-ACCACCATAACTTTGTGTGGGAAAATA
gi|3 : A--AA-T---ATTTT-GTAAA--TT-AATTAATCTTTAGTTTA-CTTAATGTCTAGATAGTTTAGATAATTA---TTTACAAATTATATTTTCAGTAAAGTA-TTGTTAATAAA------TATTCAACTCAACGCATATGTATGGATTTCTAG-GCT-TGTTTTTTAAATGATT----------GATGTTTT------------------T--GC-T----GTGT-AT-CGT------G-CTAATAATATCTATCTACAAGT------------AGAA-T--TCAA-CATT-CAA-A-T-GTTAG-C-ATA-GAAACCT--GGC-TATATAA--CT---AA--TGGAATTTT-CCATT-----AATGAA----TTAGCCACAGA---------ATAATCAAACTATA--ATTCGAATACATTACCAAATTGCT-GAA--GATATTTT--ATACT-CCAA-------------------TCTAAACCTCGTCTCGTCA-GTAGCACGG-AAT-A-AAAGTGACCAATACCC-CA--ATGAAAAAC-T--AGTCG-AAAC-CTGTTTCT---ATCTGG-TCAAA-T-CACGGTGT-CAGATTGTC-TGCGTTC---C-AATC--GGTC--ACCACAAT-A-TTCG-GCGGGAAAATA
gi|4 : aatattttaacattaattactgtaa-T----GCGTTGTACGT------GGCTAATAA-------------ATCTACTACAGA--GGAA-T--TAAAACATGGCAACA-TTGTTAGGCAATGGAAAACCT--GGCATAGATAA--CT---AAGATGAA---TTTCCA-------AATGAA----T---------ACCAAAAGATATA---AAACTTAA--AT--AAACA---TACCAAATTGCTTGAA--GATATGTTTTA-ACTTCCAAAATAC--ACT--GAAAAACCTAATACCGCGCTTCGTCA-GCGGCACGG-AATAA-AAAGTGACCAACACCC-CA--A-GAAAAAC-TAGAGTC--AAA--CTG--TCT---A-CTGGCTCAAAGTACAC-GTGTGCAA---GTCTTGCG--C---C-AATC--GCCTGCACCACAATGA-TTTG-GCGGGAAAATAatagataatttatgggaaattataaaatgaaattaactcaacacgtgacgcttttaaatagtttctaatttaagatatttgtaaaactttttataaa
gi|5 : AAT---TATTACCTTCATAAACATACATGTATTTCTACGTATTT---TCGCAA---TATAG-----AAATAGC---TTA--AA-TTTGATTT--ATAAA------GTGA--TCTCCG---A-ATTAAT--CAA------TTA-----------TTTACAGATGATATTTACGG-AA-CTA-A-GTTAA-AAA------TATTCAACTTACCAAA-AT-TATG-----C-----CT-T----------T--TT----------GATGTTTAC-A--------T----C-T--TTAT----ACAT-GT-TGT------G-CTAATTA-------------CT------------A----T--TATA-------GA-A-TTGTTAG-CTATAATAAACC----AC-TA-ATGAGTCTTCAAA--TGAA---TA-CCATT-----T-TGAA----G---------A---------ATA---A--CTTAA--AGTCAAACA---TACCCAAATACT-GAA--TACATATT--A-A-----AAAATCCTGACT-C------CTTTAAATTT--AT---TCA-GTGGCACGG-GAC-A-AAAGTAATC-------------------------GGTC--AAA------------------G-TCA-------C-GTGT-C-A---CTC-TAAA--T---C-AATC--GCT-----CACAATAATTTTG-GCGGGAAAATAagatattttaaaaacgcgaaaataaagaaaaaaattctgaacacggacgctttaattatattttctaattaaagaatatttgtaaaacct
gi|6 : CAAATTGCTTGAA--GATAT-TT--A-ACT-CCAAAACAC--ACT-CAAAAAACTCTAA-CGTCGCTCCGTCA-GCGGCACGG-AAT-ATAAAGTGACC-ACACCC-CA--A-GAAAAAC-T--AGTCC-AAAC-CTG--TCT---A-CTGG-TCAAAGT-CAC-GTGT-CAA---GTC-TGCA--C---CAAATC---CTCA-ACCACAATA---TTG-GC-GGAAAATAg
gi|7 : aatctaTGTATTAGTGGTCAAACAGCTTGCAAA-TGATTGCGGGT-TGTTTTAATTTTCGTGGA---AAAGACATCCCCGAACTGGCGAAT-T--GGCCGAAATTAAAAC-AC-GCAATC-TTTCCCGCCCATTTACAGTG-GACTT---GCTCAAGTGGATAGTGTTC----------GCAAATA-TTCT--TTAGTTGGAGCATAAGCCTGTAACTT--ATACAGT---CTAACAG-T---ATTTCAATA-------AGTC---TTTCAG---ATAATAAT--CA---------AAA-----A---TTTgtaatcacagaaaataagaaaaaaactcaaacacggcgcttttaaatattttctaattaaagatatttgtaaaactttttat
gi|8 : AAATCAAATTTTTATATCAAACATAT-----CATGTATT-GTG-TCA--CAG-TTGAAAAATGATTAGGG-T-TGTTTTAATTT-AGCGGA---AAAT---TCCCCGACC--GCAA--AT--AGT-GAAATTAAAAACAGCGcatcagttaa
gi|9 : aggatgattttaggtggaacatactgtaagtggttataagtttgcggtgttaaaagtttgtagcttttaatattggtctaattacggtgattttattttcgtggGT-GAAATTAAAACCACCGCA
gi|9 : gtttttattttcccagtgctaaaattcgcgattttactatatttggatctaaaAAATCAAATTTC-ATGTTAAACA--------CATATATT-GTT-TCA--GAG-TTGCAAAATGATTGCAG-T-TGTTTTAATTC-CGCacaaatcaaatttcatgttaaacacatatattgtttcagagttgcaaaatgattgcagttgttttaattccgcaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAAATAAAGAAAAAAACTCAACACGGACGCTTTTAAATATTTTCTAATTAAAGATATTTGTAAAACTTTTAT