lowQualScore : 11111111111111111111111111111111111111111111111111111111111 11111111111111111
lowQualScore : 1 3333333333 444444444444 22 11 1 222 555555555555555555555555555555 2 1111 1111 444 111 888888888888888888888 333 11 3333333 2222 3333333333333333 00000000000000000000000000000000000000000000000000000000000 1111111111 111 111111111 44 1 4444 00000000000000000 1111 5555555 2222 1 1 11 33333333 1
lowQualScore : 5 2 5555555555 999999999999 00 5 5 00 5 2 0 333 4 4 111111111111111111111111111111 55 0 2 5 2222 0000 999 000 5 444444444444444444444 5 2 666 11 44 0 5 5555555 5 5555 7 77 2222222222222222 5 5 88888888888888888888888888888888888888888888888888888888888 66 777 4 6666666666 66 222 8 000000000 0 00 5 0 0000 0 3 11111111111111111 0 4444 8 88 6666666 4444 8 8 3 5 8 11 66666666 0
lowQualScore : . . .......... ............ .. . . .. . . . ... . . .............................. .. . . . .... .... ... ... . ..................... . . ... .. .. . . ....... . .... . .. ................ . . ........................................................... .. ... . .......... .. ... . ......... . .. . . .... . . ................. . .... . .. ....... .... . . . . . .. ........ .
lowQualScore : 5 5 5555555555 333333333333 66 1 7 11 0 5 1 111 4 4 222222222222222222222222222222 44 1 9 7 1111 7777 777 000 3 777777777777777777777 0 2 000 99 11 9 0 9999999 0 0000 9 33 1111111111111111 7 7 00000000000000000000000000000000000000000000000000000000000 11 888 4 1111111111 11 222 9 888888888 2 00 0 0 1111 1 5 77777777777777777 8 8888 0 88 8888888 6666 0 0 2 0 0 00 44444444 0
consensus : AAATGTTTGNTTNTAGTTATCGCACCGAAA--------ATG-TATTTATACATAATT-GATTCCGCCCCGACNAAGTGTG-G-TTTGAAA-CCC-GATT--GATAATC-TTATATA----ACGT-ATATACA-TGTACCACCTTCGCTCTCC-T----GTACATAC--C-AAAT--ATGAAAG---AAGA--AAA-C-----A---AGT--CAT-AGTG-T-TATGTTGCACTTTGCCACTAGC-GTGACTTTTTA-ATAATG-ATAG--AACTGAAAA-TTTA--TAACTT--------TAATG-TA-ATAT------------------GAT----------------TAAT------------AA----T--CA---TAA-TG-----G----T--TGT---C-AAT----AANN-TTGATGAAAA-TA-TGA-TTTTGATACCGAATAATAAAAAATGACCACATACGAT-TATGAATTAN--AA-TT-AACTA----TA-AGTTA---TA-C-ATGACGTAATCATT-ACATCATATCCAAAGA--TCAT-ACTCCCTGTGGTCTGAAA
Reference ( gi|4 ) : AAATGTTTGGT-CTAA--ATTGCATCAAAA--------AT--TATTT-TACATAATT-GATTCCGCCCCGACGAAGTGTG-T-TTTGAAA-CCC-AATTTGGATAATC-TTATATA----ACG--ATA-ACA-TGTACCACCTTC-CTCTCC-T----GTACATAC--C-AAATTTATGAAAG---AAGA--AAA-C-----ATGGGGT--CAT-AGTGGTTTATGTTGTCCTTTGCCACTAGC-GTGACTTTTTA-ATAATG-ATAT--AACTGAAAA-TTTA--TAATTT--------TAATG-TA-ATAT------------------GAT----------------TAAT------------A-----T--CA---TAA-TG-----G----T--TGT---C-AAT----AAAT-TTGATGAAAACTA-TGA-TTT-GA-ATCGAATAATAAAAAATGACCACATATGATGTATGAATTAC--AA-TT-AACTA----TTTAGTTA---TA-C-ATGACGTAATCCTT-ACATCATATCCAAAGA--TCA--ACTCCTTGTGGTCTGAAAT
gi|18 : AAATGTTTGTTTCTAA--AT-GCATCAAAA--------AT--
gi|3 : acATGTT-GGT-ATAGTTATCGCACCGAAACATCTTTTATGATATTTATACATAATTTGATTCCGCCC-GACGAAGTGTG-CGTTTGAAAACCC-AATT--AATAATC-TTATATATTTAACG---TATACA-TGTACCCCTTTCGCTCTCC-T----GTACATAC--CCAAAT--ATGAAAG---AAGA--A---C-----A---AGT--CATTAGTG---TATGTTGCACTTTGC-A-TAGC-GTGACTT---A-ATAATG-ATAG--AA-TGAAAA-TTTA--TA--TT--------TAATG-TA-ATATTGTATGTAACCATAAATTAAT----------------TAAT------------AA----T--CA---TAA-TG-----G----T--TGTG--C-AAT----TAATATTGATGAAAA-TATTGATTTT-GATACCG-ATAATTAAA---------ATATG-----TGAATTACCAAA-TTAAACTA----T---GTTA---TA-C-ATGACGTAATCATTGACATCATATCCAAAGATTTCATTACT-CTTGTGGTCa
gi|14 : AA--------ATG-TATTTATTCATAATT-AATTCCG-CCCGACTAAGTATG-A-TGTGAAG-CCC-GA--TGGATAATA--TATATA----ACGT-AT--ACA-TGTACCAC
gi|7 : atT--TATAA-TACATAATT-GATTCCGCCC-GACCAAGTATT-G-TTTGAAA-CCC-GATT--GATAATC-T-GTGTA----ACGT-ATATATA-TGTACCACCTTCGCTCTCC-T----GTACATAA--C-AAAT--ATGAAAG---AAGA--A---C-----A---AGT--CAT-AGTG---TATGTTGCACTTTGCCACTAGC-GTGACTTTT---ATAATG-ATAG--AACTGAAAA-TTTA--TA--TT--------TAATG-TA-ATAT------------------GATGTAACTATAAA-----TAATTAAGTACCGGTAA-----T--CA---TAA-TG-----G----T--TGT---C-AAT----AATA-TTGATGAAAA-TA-TGA-TTT-
gi|9 : aaaaatctattcactgcat--TATT----CATAACT-GATTCCGCCC-GACTACGTATGAT-CTTGAAA-CCC-GACT--GATACTCATTATA-A----AGT--ATA--CA-TGTACCGCCTTCGCTCTCT-T----GTACATAC--A-AAA--TATTAAAG---AA-A--AAA-CAAGTAATCGATT--CAC-AATGACCTGAATTA-CTTTTATC---AGCTGTG-----TTAGATAATGTGT-T--AA--GAACA-TTTG---AATTT--------TAATA-TG-TCA-------------------GAT----------------TTCT------------A-----TTGCA---TTA-TGAGATAG----TCCTTT---C-AATTTCAAAAT-TTGtagcaagcgtaatcaagca
gi|11 : tgactatttacatgTTTATACATAATT-GATTCCGCCC-GACGAAGTGTG-G-TTTGAAA-CCC-AATT--GATAATC-T-ATATA----ACG---TATACA-TGTACCACCTTCGCTCTCC-T----GTACATAC--C-AAAT--ATGAAAG---AAGA--A---C-----A---GGT--CAT-AGTG---TATGTTGTCCTTTGCCACTAGC-GTGAC--TTTA-ATAATG-A
gi|1 : TTT-T---TAATT-GATTTCTGCTCAACCAAGGATAAT-CGCAAAA-CCCGAAT---GCCAAT---TAC-TA------G--AAA-GCT-TATACCACCTTC-GCCTTC-TTTCGATATCTACTAC-AAAA--ATGAAAAGCAAAAA--AAA-C-----CC-------CAT-A-TATTTTAGGTTTTTCTTTTCCGCTAGC-GTGACTT------TAATT-ATATTGAACTGAAAAGTTGA--T-ACTT--------CCATGATA-ATAT------------------AAG----------------TAA-------------A-----T--TAGGTTAA-TG-----GACAAT--TGTTTGC-AAT-----GAT-ATGATAAAA--TG-TGATTTT-GA-ATGAAAT-ATAAAAAA
gi|5 : -TACATAATT-GATTCC--CCCGACGA-GTGTG-G-TTTGAAA-CC--AATT--GATAAC---TACATA----ACG---TA-ACAATGTATCACCTCG-CTCTCC-T----GTACATTA--C-AAAT--ATGAAAG---A---------C-----A----AT--CAT-AGTG---TAT-TTGCACTTTGCCACTAAC-GTGACTT---A-ATA-TG-ATA---AACTGAAAA-AATA--TA--TT--------TAATG-TA-ATAT------------------GATGTAAACCATAAATAATTAAT------------AA----T--CA---TAA-TG-----G----T--TGT---CCAAT----AAAT-ATGATGAAA--TA-TGA-TTTTGATACCGAATAAT-AAAAAT--------------TATGAATTCA--AA-TT-AACTA-------AGTT----TACC-AT-ACGTAATCATT-ATATCATATCCAAAGA--TCAT-ACTCCCTGT-GTCTGAaaacattttttgggaccccaacccaatagtaaataaattttaggatattaattttactaattaatagagacatgcatgacctagtcattgccaaaaaagaatccacggaatatgttaactccttgtaatgtgactaatacatgtacctatagtttgatttaaacctttttaatcaagttcatactccatggagaagaggcgcagagaaagcttagccacaaaggcatgcacttaaaacacacatgt
gi|17 : aATTCC-TCCCGACGAAGTGTG-G-TTTGAAA-CCC-AATT
gi|2 : TCGAAA-CCC-TATT-----AAT-------TA----ACGTTATA-AC---GTAGAATCT---ATCTACAT----GTA--TAC--A-AAAT--ATGAAAG---AAAAGCAAATC-----ATAATGTAGCAT-AATGTTTGAATTTACAGTGTGCCGCTAGC-ATGACTTT--A-ATTATG-ATTG--AACTGAAGA-GTTAATTATTTC--------CAGTG-TA-ACAT-------------------AT----------------GAAT------------AGGTGAT--CA---TAACTG-----T----T--TG----C-AAT----AATA-TTGATCAAAA-TA-TGA-TTTTGATATAGAATAATAAAATATGACCACATACGA-ATATGA-TTAT--GA-T------A----TACAGGTA---TA-C-ATGACGTAATTATT-ACATAAGATCCAAGGA--TCA--G------ATGGTCTGAAAg
gi|10 : T-AATGGTGTATGTCGCACTTCACCACCAGC-GTGAC--TTTA-ACAATG-GTTG--GAGTGGAAA-GTTA--TAACTCTCCAGTGGTATTG-TATAAAT------------------GAT----------------TACTCG----------G-----C--CA---TTT-TG-----T----T--TGA---C-AAT----AATG-TTGATCAAAA-TA-TGA-ATT-----TCTAATGATccgtcatggacttgattaaaccttttcaatccagttcaaacttcaagagaagaggggcgagagaaaagctagcctccaagtgcatacacctacattgtacatgca
gi|8 : ataagtAT------------------AAT----------------TAAT------------AA----T--CA---TAA-TG-----G----T--TGT---CCAAT----AAAT-ATGATGAAA--TA-TGA-TTTTGATACCGAATAATAAAAA--------------T-TATGAATTCA--AA-TT-AACTA-------AGTT----TA-CCAT-ACGTAATCATT-ATATCATATCCAAAGA--TCAT-ACTCCCTGT-GTCTGAAAttcacagcgtgaaatttaaacaatac
gi|6 : aAT----------------AAAT------------AA----T--TA---TAA-AG-----G----T--TAT---C-AAT----AATA-TTGATAAAAA-TG-TGA-TTTTGATACCGAATAATAAAACATGACCACAAATGAT-TATGAATTAC--AAATT-AACTACATGTATAGTTAAAATA-C-ATAACGTAATCGTT-ACATCATATCCAAAGA--TCAT-ACTCC-TGTGATCTGAAAccgctacaataaagaatatgaaatataaacatgaggaagtgaggggcggagtggtaagaaaaatctccataacttcaaaacgattattctgcggcgtccgaaaagaatgaagaagcgacgcgatcctgacaaagaacaaaagagatattcccg
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TTTCCAACGTAGTATGATGTAATTATAACTAGTTTAAAAGTAACAATAATGGTTGTCAATAATATGATTTTGATACAGAATAATGAAACATTACCACCTTTGACTATGATTTA
Unaligned ( gi|13 ): GTGCATCATGTAATCATTAAATTAGAATCCAATGGACTGGCTCCTTATGATTGAAACCGCCATGGACTTCATTAAAAGTTTTCAATAAAGTTCAGACCTCA
Unaligned ( gi|15 ): CAATAACTTCAAAACGATGTTGAATCTGCGGCGTCCTGTAAGAGAATGAAGAAGCGACGCGATCCTGACANT
Unaligned ( gi|16 ): GCGTCTGAAAGAATGAAGAAGCGACGGCGATGCTGACAAAGAACAAGAGATATTTCCC
Alignments
lowQualScore : 4444 11 33333333 111 1 22222 2222222 11111 33333333 111111 22222 222222222222 77777777777777777777777777777777777777777777777 2222222222 44444444444444444 111 3333333333 1111 1 1
lowQualScore : 3 0000 88 66666666 8 1 000 5 66 2 1 4 4 4 4 0 55 33333 9999 3333333 3 5 888 8888 66 5 44444 777 0 4 4 5 00000000 5 5 0 444444 11111 22 0 77 77 888888888888 5 5 66 66666666666666666666666666666666666666666666666 4 777 8 8888 4444444444 4 7777 44 4 4 3 00000000000000000 444 6 3333333333 9999 3 9 6 99 99 0 6
lowQualScore : . .... .. ........ . . ... . .. . . . . . . . .. ..... .... ....... . . ... .... .. . ..... ... . . . . ........ . . . ...... ..... .. . .. .. ............ . . .. ............................................... . ... . .... .......... . .... .. . . . ................. ... . .......... .... . . . .. .. . .
lowQualScore : 0 0000 55 22222222 0 4 000 0 88 2 0 4 0 0 0 5 55 88888 4444 6666666 2 0 888 1111 99 0 77777 888 1 4 4 0 11111111 0 0 2 444444 99999 99 7 33 99 000000000000 0 0 99 88888888888888888888888888888888888888888888888 0 000 0 5555 6666666666 0 1111 00 0 0 2 88888888888888888 666 7 3333333333 0000 3 3 7 22 88 8 7
consensus : AAATGTTNGGTTNTAGTTATCGCACCGAAA--------ATG-TATTTATA---CATAATT-GATTCCGCCCCGACGAAGTGTG-GT-T-TGAAA-CCCGATT--GATAATCTTA-TATA----ACGTATA-ACATGTACCACCTTCGCTCTCC-T---GTACATAC--C-AAAT--ATGAAA-GAAGAAAACA---AGTCA-T-A-GTG--T----TA-TGTT-GCACTT------TGCCACTAGCGTGACTTTTTAATAATGATNGAACTGAAAA-TTTA--TAACTT--------TAATG-TA-A--TAT------------------GAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GT---CAA-TAATN-TTGATGAAAA-TA-TGATTTTGATACCGAATAATAAAA-ATGACCACATATGAT-TATGAATTA--AAATT-AACTA-TA-----AGTT---ATA-CATGACGTAATCATT-ACATCATATCCAAAGA--TCA-TACTCCCTGTGGTCTGAAA
Reference ( family-4654 ) : AAATGTTTGNTTNTAGTTATCGCACCGAAA--------ATG-TATTTATA---CATAATT-GATTCCGCCCCGACNAAGTGTG-GT-T-TGAAA-CCCGATT--GATAATCTTA-TATA----ACGTATATACATGTACCACCTTCGCTCTCC-T---GTACATAC--C-AAAT--ATGAAA-GAAGAAAACA---AGTCA-T-A-GTG--T----TA-TGTT-GCACTT------TGCCACTAGCGTGACTTTTTAATAATGATAGAACTGAAAA-TTTA--TAACTT--------TAATG-TA-A--TAT------------------GAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GT---CAA-TAANN-TTGATGAAAA-TA-TGATTTTGATACCGAATAATAAAAAATGACCACATACGAT-TATGAATTA--NAATT-AACTA-TA-----AGTT---ATA-CATGACGTAATCATT-ACATCATATCCAAAGA--TCA-TACTCCCTGTGGTCTGAAA
gi|1 : TAATT-GATTTCTGCTCAACCAAGGATA-AT-CGCAAAA-CCCGAAT--GCCAAT--TACTAGA----AAG------CTTATACCACCTTCGCCTTCT-TTCGATATCTACTAC-AAAA--ATGAAAAGCAAAAAAAA---CCCCA-T-ATATT--T----TA-GGTT-TTTCTT------TTCCGCTAGCGTGAC--TTTAATTAT-ATTGAACTGAAAAGTTGA--T-ACTT--------CCATGATA-A--TAT------------------AAG----------------TA----------AATTAGGTTAA-TGGACAATT-----GTTTGCAA-TGATA--TGAT-AAAA-TG-TGATTTTGA-ATGAAAT-ATAAAAAA
gi|10 : ttttATA---AGTTAAT-G-GTG--T-----A-TGTC-GCACTT------CACCACCAGCGTGAC--TTTAACAATGGTTGGAGTGGAAA-GTTA--TAACTCTCCAGTGGTATTG-TATA--AAT------------------GAT----------------TAC-------TCGGCCA---TTT-TGT----TT-----GA---CAA-TAATG-TTGATCAAAA-TA-TGAATTTaaacattttttgggaccccaacccaatagtaaataaattttaggatattaattttactaattaatagagacatgcatgacctagtcattgccaaaaaagaatccacggaatatgttaactccttgtaatgtgactaatacatgtacctatagtttgatttaaacctttttaatcaagttcatactccatggagaagaggcgcagagaaagcttagccacaaaggcatgcacttaaaacacacatgt
gi|11 : TTTATA---CATAATT-GATTCCGCCC-GACGAAGTGTG-GT-T-TGAAA-CCCAATT--GATAATCT-A-TATA----ACGTATA--CATGTACCACCTTCGCTCTCC-T---GTACATAC--C-AAAT--ATGAAA-GAAG--AACA---GGTCA-T-A-GTG-------TA-TGTT-GTCCTT------TGCCACTAGCGTGAC--TTTAATAATGActaatgatttcacagcgtgaaatttaaacaatac
gi|12 : AACG-TA-G--TAT------------------GAT------------------G-------T-AATTA---TAACTAG----TTTAAAAGTAA-CAA-TAATGGTTGTCAATAA-TA-TGATTTTGATACAGAATAATGAAACATTACCACCTTTGAC-TATGATTTA--
gi|14 : tttccAA--------ATG-TATTTATT---CATAATT-AATTCCG-CCCGACTAAGTATG-AT-G-TGAAG-CCCGATG--GATAATA-TA-TATA----ACG--TATACATGTACCAC
gi|17 : atATTCC-TCCCGACGAAGTGTG-GT-T-TGAAA-CCCAATT--G
gi|2 : -T-CGAAA-CCCTATT--AAT----------TA----ACGT-TATA-ACGTAGAATCT---ATCTACAT---GTA--TAC--A-AAAT--ATGAAA-GAA--AAGCA---AATCA-T-A-ATG--TAGCATAATGTTTGAATTTACAGTGTGCCGCTAGCATGACTTT--AATTATGATTGAACTGAAGA-GTTAATTATTTC--------CAGTG-TA-ACATAT------------------GAA----------------TAGG------T-GATCA---TAACTGT----TT-----G----CAA-TAATA-TTGATCAAAA-TA-TGATTTTGATATAGAATAATAAAATATGACCACATACGAA-TATG-ATTA--TGA------TA-TAC----AGGT---ATA-CATGACGTAATTATT-ACATAAGATCCAAGGA--TCA-GA-------TGGTCTGAAA
gi|3 : ATGTTGG--TATAGTTATCGCACCGAAACATCTTTTATGATATTTATA---CATAATTTGATTCCGCCC-GACGAAGTGTGCGT-T-TGAAAACCCAATT--AATAATCTTA-TATATTTAACGTATA--CATGTACCCCTTTCGCTCTCC-T---GTACATAC--CCAAAT--ATGAAA-GAAGAA--CA---AGTCA-TTA-GTG--T-----A-TGTT-GCACTT------TGC-A-TAGCGTGACTT---AATAATGATAGAA-TGAAAA-TTTA--TA--TT--------TAATG-TA-A--TATTGTATGTAACCATAAATTAAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GTG--CAATTAATA-TTGATGAAAA-TATTGATTTTGATACCG-ATAATTAAA---------ATATG-----TGAATTACCAAATTAAACTA-T-------GTT---ATA-CATGACGTAATCATTGACATCATATCCAAAGATTTCATTACT-CTTGTGGTCccgtcatggacttgattaaaccttttcaatccagttcaaacttcaagagaagaggggcgagagaaaagctagcctccaagtgcatacacctacattgtacatgca
gi|4 : AAATGTTTGGT-CTAA--ATTGCATCAAAA--------AT--TATTT-TA---CATAATT-GATTCCGCCCCGACGAAGTGTG-TT-T-TGAAA-CCCAATTTGGATAATCTTA-TATA----ACG-ATA-ACATGTACCACCTTC-CTCTCC-T---GTACATAC--C-AAATTTATGAAA-GAAGAAAACATGGGGTCA-T-A-GTGGTT----TA-TGTT-GTCCTT------TGCCACTAGCGTGACTTTTTAATAATGATATAACTGAAAA-TTTA--TAATTT--------TAATG-TA-A--TAT------------------GAT----------------TAA-------T--ATCA---TAA-TGG----TT-----GT---CAA-TAAAT-TTGATGAAAACTA-TGA-TTTGA-ATCGAATAATAAAAAATGACCACATATGATGTATGAATTA--CAATT-AACTATTT-----AGTT---ATA-CATGACGTAATCCTT-ACATCATATCCAAAGA--TCA--ACTCCTTGTGGTCTGAAA
gi|5 : ATA---CATAATT-GATTCC--CCCGACGA-GTGTG-GT-T-TGAAA-CC-AATT--GATAAC--TA-CATA----ACGTA-ACA-ATGTATCACCT-CGCTCTCC-T---GTACATTA--C-AAAT--ATGAAA-GA------CA---A-TCA-T-A-GTG--T-----A-T-TT-GCACTT------TGCCACTAACGTGACTT---AATA-TGATA-AACTGAAAA-AATA--TA--TT--------TAATG-TA-A--TAT------------------GATGTAAACCATAAATAATTAA-------T-AATCA---TAA-TGG----TT-----GTC--CAA-TAAAT-ATGATG-AAA-TA-TGATTTTGATACCGAATAATAAAA--------------AT-TATGAATTC--AAATT-AAC---TA-----AGTT----TACCAT-ACGTAATCATT-ATATCATATCCAAAGA--TCA-TACTCCCTGT-GTCTGAt
gi|6 : AT----------------AAA-------T-AATTA---TAA-AGG----TT-----AT---CAA-TAATA-TTGATAAAAA-TG-TGATTTTGATACCGAATAATAAAACATGACCACAAATGAT-TATGAATTAC-AAATT-AACTA-CATGTATAGTTAAAATA-CATAACGTAATCGTT-ACATCATATCCAAAGA--TCA-TACT-CCTGTGATCTGAAA
gi|7 : aaattgaaTG-CATTTATAATACATAATT-GATTCCGCCC-GACCAAGTATT-GT-T-TGAAA-CCCGATT--GATAATCT-G-TGTA----ACGTATATATATGTACCACCTTCGCTCTCC-T---GTACATAA--C-AAAT--ATGAAA-GAAGAA--CA---AGTCA-T-A-GTG--T-----A-TGTT-GCACTT------TGCCACTAGCGTGACTTTT--ATAATGATAGAACTGAAAA-TTTA--TA--TT--------TAATG-TA-A--TAT------------------GATGTAACTATAAATAAT-TAAGTACCGGT-AATCA---TAA-TGG----TT-----GT---CAA-TAATA-TTGATGAAAA-TA-TGATTTTccgtgtacataaagaatattgaaaagaaatgacaacataaacacgaggaaaggtggaagggcggaggtggttagaaaaattccaataacttcaaaacgatgctgattctgcggcgtcctgaaagagaatgaagaagcgacgcgattctgacaaagttt
gi|8 : aaaaatctattcacAT------------------AAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GTC--CAA-TAAAT-ATGATG-AAA-TA-TGATTTTGATACCGAATAATAAAA--------------AT-TATGAATTC--AAATT-AAC---TA-----AGTT----TACCAT-ACGTAATCATT-ATATCATATCCAAAGA--TCA-TACTCCCTGT-GTCTGAAAagcaagcgtaatcaagca
gi|9 : a--------ATG-TATT-------CATAACT-GATTCCGCCC-GACTACGTATG-ATCT-TGAAA-CCCGACT--GATACTCAT--TATA----AAGTATA--CATGTACCGCCTTCGCTCTCT-T---GTACATAC--A-AAAT--ATTAAA-GAA-AAAACA---AGTAA-T-ccgctacaataaagaatatgaaatataaacatgaggaagtgaggggcggagtggtaagaaaaatctccataacttcaaaacgattattctgcggcgtccgaaaagaatgaagaagcgacgcgatcctgacaaagaacaaaagagatattcccg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GTGCATCATGTAATCATTAAATTAGAATCCAATGGACTGGCTCCTTATGATTGAAACCGCCATGGACTTCATTAAAAGTTTTCAATAAAGTTCAGACCTCA
Unaligned ( gi|15 ): CAATAACTTCAAAACGATGTTGAATCTGCGGCGTCCTGTAAGAGAATGAAGAAGCGACGCGATCCTGACANT
Unaligned ( gi|16 ): GCGTCTGAAAGAATGAAGAAGCGACGGCGATGCTGACAAAGAACAAGAGATATTTCCC
Unaligned ( gi|18 ): ACAAATGTTTGTTTCTAAATGCATCAAAAATA
Alignments
lowQualScore : 3333 11 33333333 111 1 22222 1111 11111 33333333 111111 22222 222222222222 77777777777777777777777777777777777777777777777 2222222222 44444444444444444 111 3333333333 1111 1 1
lowQualScore : 1 4444 88 66666666 8 1 000 5 66 2 1 4 4 4 4 0 55 11111 9999 4444 4 0 888 8888 66 5 44444 777 0 4 4 5 00000000 5 5 0 444444 11111 11 0 77 77 888888888888 5 5 66 66666666666666666666666666666666666666666666666 4 777 8 8888 4444444444 4 666 44 4 4 3 5 00000000000000000 666 6 3333333333 9999 3 9 6 99 99 0 6
lowQualScore : . .... .. ........ . . ... . .. . . . . . . . .. ..... .... .... . . ... .... .. . ..... ... . . . . ........ . . . ...... ..... .. . .. .. ............ . . .. ............................................... . ... . .... .......... . ... .. . . . . ................. ... . .......... .... . . . .. .. . .
lowQualScore : 0 5555 55 22222222 0 4 000 0 88 2 1 4 0 0 0 5 55 11111 4444 3333 4 4 888 1111 99 0 77777 888 1 4 4 0 11111111 0 0 2 444444 99999 77 7 33 99 000000000000 0 0 99 88888888888888888888888888888888888888888888888 0 000 0 5555 6666666666 0 111 00 0 0 2 0 22222222222222222 777 7 3333333333 0000 3 3 7 22 88 8 7
consensus : AAATGTTNGGTTNTAGTTATCGCACCGAAA--------ATG-TATTTATA---CATAATT-GATTCCGCCCCGACGAAGTGTG-GT-T-TGAAA-CCCGATT--GATAATCTTA-TATA----ACGTATA-ACA-TGTACCACCTTCGCTCTCCT---GTACATAC--C-AAAT--ATGAAA-GAAGAAAACA---AGTCA-T-A-GTG--T----TA-TGTT-GCACTT------TGCCACTAGCGTGACTTTTTAATAATGATNGAACTGAAAA-TTTA--TAACTT--------TAATG-TA-A--TAT------------------GAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GT---CAA-TAATN-TTGATGAAAA-TA-TGATTTTGATACCGAATAAT-AAAA-ATGACCACATATGAT-TATGAATTA--AAATT-AACTA-TA-----AGTT---ATA-CATGACGTAATCATT-ACATCATATCCAAAGA--TCA-TACTCCCTGTGGTCTGAAA
Reference ( family-4654 ) : AAATGTTNGGTTNTAGTTATCGCACCGAAA--------ATG-TATTTATA---CATAATT-GATTCCGCCCCGACGAAGTGTG-GT-T-TGAAA-CCCGATT--GATAATCTTA-TATA----ACGTATA-ACA-TGTACCACCTTCGCTCTCCT---GTACATAC--C-AAAT--ATGAAA-GAAGAAAACA---AGTCA-T-A-GTG--T----TA-TGTT-GCACTT------TGCCACTAGCGTGACTTTTTAATAATGATNGAACTGAAAA-TTTA--TAACTT--------TAATG-TA-A--TAT------------------GAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GT---CAA-TAATN-TTGATGAAAA-TA-TGATTTTGATACCGAATAAT-AAAA-ATGACCACATATGAT-TATGAATTA--AAATT-AACTA-TA-----AGTT---ATA-CATGACGTAATCATT-ACATCATATCCAAAGA--TCA-TACTCCCTGTGGTCTGAAA
gi|1 : TAATT-GATTTCTGCTCAACCAAGGATA-AT-CGCAAAA-CCCGAAT--GCCAAT--TACTAGA----A-----A-GCT-TATACCACCTTCGCCTTCTTTCGATATCTACTAC-AAAA--ATGAAAAGCAAAAAAAA---CCCCA-T-ATATT--T----TA-GGTT-TTTCTT------TTCCGCTAGCGTGAC--TTTAATTAT-ATTGAACTGAAAAGTTGA--T-ACTT--------CCATGATA-A--TAT------------------AAG----------------TA----------AATTAGGTTAA-TGGACAATT-----GTTTGCAA-TGATA--TGAT-AAAA-TG-TGATTTTGA-ATGAAAT-AT-AAAA-A
gi|10 : ttttATA---AGTTAAT-G-GTG--T-----A-TGTC-GCACTT------CACCACCAGCGTGAC--TTTAACAATGGTTGGAGTGGAAA-GTTA--TAACTCTCCAGTGGTATTG-TATA--AAT------------------GAT----------------TAC-------TCGGCCA---TTT-TGT----TT-----GA---CAA-TAATG-TTGATCAAAA-TA-TGAATTTaaaacattttttgggaccccaacccaatagtaaataaattttaggatattaattttactaattaatagagacatgcatgacctagtcattgccaaaaaagaatccacggaatatgttaactccttgtaatgtgactaatacatgtacctatagtttgatttaaacctttttaatcaagttcatactccatggagaagaggcgcagagaaagcttagccacaaaggcatgcacttaaaacacacatgt
gi|11 : TTTATA---CATAATT-GATTCCGCCC-GACGAAGTGTG-GT-T-TGAAA-CCCAATT--GATAATCT-A-TATA----ACGTATA--CA-TGTACCACCTTCGCTCTCCT---GTACATAC--C-AAAT--ATGAAA-GAAG--AACA---GGTCA-T-A-GTG-------TA-TGTT-GTCCTT------TGCCACTAGCGTGAC--TTTAATAATGActaatgatttcacagcgtgaaatttaaacaatac
gi|12 : AACG-TA-G--TAT------------------GAT------------------G-------T-AATTA---TAACTAG----TTTAAAAGTAA-CAA-TAATGGTTGTCAATAA-TA-TGATTTTGATACAGAATAAT-GAAACATTACCACCTTTGAC-TATGATTTA--
gi|14 : tttccAA--------ATG-TATTTATT---CATAATT-AATTCCG-CCCGACTAAGTATG-AT-G-TGAAG-CCCGATG--GATAATA-TA-TATA----ACGTAT--ACA-TGTACCAC
gi|17 : atATTCC-TCCCGACGAAGTGTG-GT-T-TGAAA-CCCAATT--G
gi|2 : -T-CGAAA-CCCTATT--AATTAACGT--TATA----ACGTAGA-AT------CTATCTACA------T---GTA--TAC--A-AAAT--ATGAAA-GAA--AAGCA---AATCA-T-A-ATG--TAGCATAATGTTTGAATTTACAGTGTGCCGCTAGCATGACTTT--AATTATGATTGAACTGAAGA-GTTAATTATTTC--------CAGTG-TA-ACATAT------------------GAA----------------TAGG------T-GATCA---TAACTGT----TT-----G----CAA-TAATA-TTGATCAAAA-TA-TGATTTTGATATAGAATAAT-AAAATATGACCACATACGAA-TATG-ATTA------T-GA-TA-TAC----AGGT---ATA-CATGACGTAATTATT-ACATAAGATCCAAGGA--TCA-GA-------TGGTCTGAAA
gi|3 : ATGTTGG--TATAGTTATCGCACCGAAACATCTTTTATGATATTTATA---CATAATTTGATTCCGCCC-GACGAAGTGTGCGT-T-TGAAAACCCAATT--AATAATCTTA-TATATTTAACGTATA--CA-TGTACCCCTTTCGCTCTCCT---GTACATAC--CCAAAT--ATGAAA-GAAGAA--CA---AGTCA-TTA-GTG--T-----A-TGTT-GCACTT------TGC-A-TAGCGTGACTT---AATAATGATAGAA-TGAAAA-TTTA--TA--TT--------TAATG-TA-A--TATTGTATGTAACCATAAATTAAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GTG--CAATTAATA-TTGATGAAAA-TATTGATTTTGATACCG-ATAAT-TAAA---------ATATG-----TGAATTACCAAATTAAACTA-T-------GTT---ATA-CATGACGTAATCATTGACATCATATCCAAAGATTTCATTACT-CTTGTGGTCccgtcatggacttgattaaaccttttcaatccagttcaaacttcaagagaagaggggcgagagaaaagctagcctccaagtgcatacacctacattgtacatgca
gi|4 : AAATGTTTGGT-CTAA--ATTGCATCAAAA--------AT--TATTT-TA---CATAATT-GATTCCGCCCCGACGAAGTGTG-TT-T-TGAAA-CCCAATTTGGATAATCTTA-TATA----ACG-ATA-ACA-TGTACCACCTTC-CTCTCCT---GTACATAC--C-AAATTTATGAAA-GAAGAAAACATGGGGTCA-T-A-GTGGTT----TA-TGTT-GTCCTT------TGCCACTAGCGTGACTTTTTAATAATGATATAACTGAAAA-TTTA--TAATTT--------TAATG-TA-A--TAT------------------GAT----------------TAA-------T--ATCA---TAA-TGG----TT-----GT---CAA-TAAAT-TTGATGAAAACTA-TGA-TTTGA-ATCGAATAATAAAAA-ATGACCACATATGATGTATGAATTA--CAATT-AACTATTT-----AGTT---ATA-CATGACGTAATCCTT-ACATCATATCCAAAGA--TCA--ACTCCTTGTGGTCTGAAA
gi|5 : ATA---CATAATT-GATTCC--CCCGACGA-GTGTG-GT-T-TGAAA-CC-AATT--GATAAC--TA-CATA----ACGTA---ACAATGTATCACCT-CGCTCTCCT---GTACATTA--C-AAAT--ATGAAA-GA------CA---A-TCA-T-A-GTG--T-----A-T-TT-GCACTT------TGCCACTAACGTGACTT---AATA-TGATA-AACTGAAAA-AATA--TA--TT--------TAATG-TA-A--TAT------------------GATGTAAACCATAAATAATTAA-------T-AATCA---TAA-TGG----TT-----GTC--CAA-TAAAT-ATGATG-AAA-TA-TGATTTTGATACCGAATAAT-AAAA--------------AT-TATGAATTC--AAATT-AAC---TA-----AGTT----TACCAT-ACGTAATCATT-ATATCATATCCAAAGA--TCA-TACTCCCTGT-GTCTGAt
gi|6 : AT----------------AAA-------T-AATTA---TAA-AGG----TT-----AT---CAA-TAATA-TTGATAAAAA-TG-TGATTTTGATACCGAATAAT-AAAACATGACCACAAATGAT-TATGAATTAC-AAATT-AACTA-CATGTATAGTTAAAATA-CATAACGTAATCGTT-ACATCATATCCAAAGA--TCA-TACT-CCTGTGATCTGAAA
gi|7 : aaattgaaTG-CATTTATAATACATAATT-GATTCCGCCC-GACCAAGTATT-GT-T-TGAAA-CCCGATT--GATAATCT-G-TGTA----ACGTATATATA-TGTACCACCTTCGCTCTCCT---GTACATAA--C-AAAT--ATGAAA-GAAGAA--CA---AGTCA-T-A-GTG--T-----A-TGTT-GCACTT------TGCCACTAGCGTGACTTTT--ATAATGATAGAACTGAAAA-TTTA--TA--TT--------TAATG-TA-A--TAT------------------GATGTAACTATAAATAAT-TAAGTACCGGT-AATCA---TAA-TGG----TT-----GT---CAA-TAATA-TTGATGAAAA-TA-TGATTTTccgtgtacataaagaatattgaaaagaaatgacaacataaacacgaggaaaggtggaagggcggaggtggttagaaaaattccaataacttcaaaacgatgctgattctgcggcgtcctgaaagagaatgaagaagcgacgcgattctgacaaagttt
gi|8 : aaaaatctattcacAT------------------AAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GTC--CAA-TAAAT-ATGATG-AAA-TA-TGATTTTGATACCGAATAAT-AAAA--------------AT-TATGAATTC--AAATT-AAC---TA-----AGTT----TACCAT-ACGTAATCATT-ATATCATATCCAAAGA--TCA-TACTCCCTGT-GTCTGAAAagcaagcgtaatcaagca
gi|9 : a--------ATG-TATT-------CATAACT-GATTCCGCCC-GACTACGTATG-ATCT-TGAAA-CCCGACT--GATACTCAT--TATA----AAGTATA--CA-TGTACCGCCTTCGCTCTCTT---GTACATAC--A-AAAT--ATTAAA-GAA-AAAACA---AGTAA-T-ccgctacaataaagaatatgaaatataaacatgaggaagtgaggggcggagtggtaagaaaaatctccataacttcaaaacgattattctgcggcgtccgaaaagaatgaagaagcgacgcgatcctgacaaagaacaaaagagatattcccg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GTGCATCATGTAATCATTAAATTAGAATCCAATGGACTGGCTCCTTATGATTGAAACCGCCATGGACTTCATTAAAAGTTTTCAATAAAGTTCAGACCTCA
Unaligned ( gi|15 ): CAATAACTTCAAAACGATGTTGAATCTGCGGCGTCCTGTAAGAGAATGAAGAAGCGACGCGATCCTGACANT
Unaligned ( gi|16 ): GCGTCTGAAAGAATGAAGAAGCGACGGCGATGCTGACAAAGAACAAGAGATATTTCCC
Unaligned ( gi|18 ): ACAAATGTTTGTTTCTAAATGCATCAAAAATA
Alignments
lowQualScore : 3333 11 33333333 111 1 22222 1111 11111 33333333 111111 22222 222222222222 77777777777777777777777777777777777777777777777 2222222222 44444444444444444 111 3333333333 1111 1 1
lowQualScore : 1 4444 88 66666666 8 1 000 5 66 2 1 4 4 4 4 0 55 11111 9999 4444 4 0 888 8888 66 5 44444 777 0 4 4 5 00000000 5 5 0 444444 11111 11 0 77 77 888888888888 5 5 66 66666666666666666666666666666666666666666666666 4 777 8 8888 4444444444 4 666 44 4 4 3 5 00000000000000000 666 6 3333333333 9999 3 9 6 99 99 0 6
lowQualScore : . .... .. ........ . . ... . .. . . . . . . . .. ..... .... .... . . ... .... .. . ..... ... . . . . ........ . . . ...... ..... .. . .. .. ............ . . .. ............................................... . ... . .... .......... . ... .. . . . . ................. ... . .......... .... . . . .. .. . .
lowQualScore : 0 5555 55 22222222 0 4 000 0 88 2 1 4 0 0 0 5 55 11111 4444 3333 4 4 888 1111 99 0 77777 888 1 4 4 0 11111111 0 0 2 444444 99999 77 7 33 99 000000000000 0 0 99 88888888888888888888888888888888888888888888888 0 000 0 5555 6666666666 0 111 00 0 0 2 0 22222222222222222 777 7 3333333333 0000 3 3 7 22 88 8 7
consensus : AAATGTTNGGTTNTAGTTATCGCACCGAAA--------ATG-TATTTATA---CATAATT-GATTCCGCCCCGACGAAGTGTG-GT-T-TGAAA-CCCGATT--GATAATCTTA-TATA----ACGTATA-ACA-TGTACCACCTTCGCTCTCCT---GTACATAC--C-AAAT--ATGAAA-GAAGAAAACA---AGTCA-T-A-GTG--T----TA-TGTT-GCACTT------TGCCACTAGCGTGACTTTTTAATAATGATNGAACTGAAAA-TTTA--TAACTT--------TAATG-TA-A--TAT------------------GAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GT---CAA-TAATN-TTGATGAAAA-TA-TGATTTTGATACCGAATAAT-AAAA-ATGACCACATATGAT-TATGAATTA--AAATT-AACTA-TA-----AGTT---ATA-CATGACGTAATCATT-ACATCATATCCAAAGA--TCA-TACTCCCTGTGGTCTGAAA
Reference ( family-4654 ) : AAATGTTNGGTTNTAGTTATCGCACCGAAA--------ATG-TATTTATA---CATAATT-GATTCCGCCCCGACGAAGTGTG-GT-T-TGAAA-CCCGATT--GATAATCTTA-TATA----ACGTATA-ACA-TGTACCACCTTCGCTCTCCT---GTACATAC--C-AAAT--ATGAAA-GAAGAAAACA---AGTCA-T-A-GTG--T----TA-TGTT-GCACTT------TGCCACTAGCGTGACTTTTTAATAATGATNGAACTGAAAA-TTTA--TAACTT--------TAATG-TA-A--TAT------------------GAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GT---CAA-TAATN-TTGATGAAAA-TA-TGATTTTGATACCGAATAAT-AAAA-ATGACCACATATGAT-TATGAATTA--AAATT-AACTA-TA-----AGTT---ATA-CATGACGTAATCATT-ACATCATATCCAAAGA--TCA-TACTCCCTGTGGTCTGAAA
gi|1 : TAATT-GATTTCTGCTCAACCAAGGATA-AT-CGCAAAA-CCCGAAT--GCCAAT--TACTAGA----A-----A-GCT-TATACCACCTTCGCCTTCTTTCGATATCTACTAC-AAAA--ATGAAAAGCAAAAAAAA---CCCCA-T-ATATT--T----TA-GGTT-TTTCTT------TTCCGCTAGCGTGAC--TTTAATTAT-ATTGAACTGAAAAGTTGA--T-ACTT--------CCATGATA-A--TAT------------------AAG----------------TA----------AATTAGGTTAA-TGGACAATT-----GTTTGCAA-TGATA--TGAT-AAAA-TG-TGATTTTGA-ATGAAAT-AT-AAAA-A
gi|10 : ttttATA---AGTTAAT-G-GTG--T-----A-TGTC-GCACTT------CACCACCAGCGTGAC--TTTAACAATGGTTGGAGTGGAAA-GTTA--TAACTCTCCAGTGGTATTG-TATA--AAT------------------GAT----------------TAC-------TCGGCCA---TTT-TGT----TT-----GA---CAA-TAATG-TTGATCAAAA-TA-TGAATTTaaaacattttttgggaccccaacccaatagtaaataaattttaggatattaattttactaattaatagagacatgcatgacctagtcattgccaaaaaagaatccacggaatatgttaactccttgtaatgtgactaatacatgtacctatagtttgatttaaacctttttaatcaagttcatactccatggagaagaggcgcagagaaagcttagccacaaaggcatgcacttaaaacacacatgt
gi|11 : TTTATA---CATAATT-GATTCCGCCC-GACGAAGTGTG-GT-T-TGAAA-CCCAATT--GATAATCT-A-TATA----ACGTATA--CA-TGTACCACCTTCGCTCTCCT---GTACATAC--C-AAAT--ATGAAA-GAAG--AACA---GGTCA-T-A-GTG-------TA-TGTT-GTCCTT------TGCCACTAGCGTGAC--TTTAATAATGActaatgatttcacagcgtgaaatttaaacaatac
gi|12 : AACG-TA-G--TAT------------------GAT------------------G-------T-AATTA---TAACTAG----TTTAAAAGTAA-CAA-TAATGGTTGTCAATAA-TA-TGATTTTGATACAGAATAAT-GAAACATTACCACCTTTGAC-TATGATTTA--
gi|14 : tttccAA--------ATG-TATTTATT---CATAATT-AATTCCG-CCCGACTAAGTATG-AT-G-TGAAG-CCCGATG--GATAATA-TA-TATA----ACGTAT--ACA-TGTACCAC
gi|17 : atATTCC-TCCCGACGAAGTGTG-GT-T-TGAAA-CCCAATT--G
gi|2 : -T-CGAAA-CCCTATT--AATTAACGT--TATA----ACGTAGA-AT------CTATCTACA------T---GTA--TAC--A-AAAT--ATGAAA-GAA--AAGCA---AATCA-T-A-ATG--TAGCATAATGTTTGAATTTACAGTGTGCCGCTAGCATGACTTT--AATTATGATTGAACTGAAGA-GTTAATTATTTC--------CAGTG-TA-ACATAT------------------GAA----------------TAGG------T-GATCA---TAACTGT----TT-----G----CAA-TAATA-TTGATCAAAA-TA-TGATTTTGATATAGAATAAT-AAAATATGACCACATACGAA-TATG-ATTA------T-GA-TA-TAC----AGGT---ATA-CATGACGTAATTATT-ACATAAGATCCAAGGA--TCA-GA-------TGGTCTGAAA
gi|3 : ATGTTGG--TATAGTTATCGCACCGAAACATCTTTTATGATATTTATA---CATAATTTGATTCCGCCC-GACGAAGTGTGCGT-T-TGAAAACCCAATT--AATAATCTTA-TATATTTAACGTATA--CA-TGTACCCCTTTCGCTCTCCT---GTACATAC--CCAAAT--ATGAAA-GAAGAA--CA---AGTCA-TTA-GTG--T-----A-TGTT-GCACTT------TGC-A-TAGCGTGACTT---AATAATGATAGAA-TGAAAA-TTTA--TA--TT--------TAATG-TA-A--TATTGTATGTAACCATAAATTAAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GTG--CAATTAATA-TTGATGAAAA-TATTGATTTTGATACCG-ATAAT-TAAA---------ATATG-----TGAATTACCAAATTAAACTA-T-------GTT---ATA-CATGACGTAATCATTGACATCATATCCAAAGATTTCATTACT-CTTGTGGTCccgtcatggacttgattaaaccttttcaatccagttcaaacttcaagagaagaggggcgagagaaaagctagcctccaagtgcatacacctacattgtacatgca
gi|4 : AAATGTTTGGT-CTAA--ATTGCATCAAAA--------AT--TATTT-TA---CATAATT-GATTCCGCCCCGACGAAGTGTG-TT-T-TGAAA-CCCAATTTGGATAATCTTA-TATA----ACG-ATA-ACA-TGTACCACCTTC-CTCTCCT---GTACATAC--C-AAATTTATGAAA-GAAGAAAACATGGGGTCA-T-A-GTGGTT----TA-TGTT-GTCCTT------TGCCACTAGCGTGACTTTTTAATAATGATATAACTGAAAA-TTTA--TAATTT--------TAATG-TA-A--TAT------------------GAT----------------TAA-------T--ATCA---TAA-TGG----TT-----GT---CAA-TAAAT-TTGATGAAAACTA-TGA-TTTGA-ATCGAATAATAAAAA-ATGACCACATATGATGTATGAATTA--CAATT-AACTATTT-----AGTT---ATA-CATGACGTAATCCTT-ACATCATATCCAAAGA--TCA--ACTCCTTGTGGTCTGAAA
gi|5 : ATA---CATAATT-GATTCC--CCCGACGA-GTGTG-GT-T-TGAAA-CC-AATT--GATAAC--TA-CATA----ACGTA---ACAATGTATCACCT-CGCTCTCCT---GTACATTA--C-AAAT--ATGAAA-GA------CA---A-TCA-T-A-GTG--T-----A-T-TT-GCACTT------TGCCACTAACGTGACTT---AATA-TGATA-AACTGAAAA-AATA--TA--TT--------TAATG-TA-A--TAT------------------GATGTAAACCATAAATAATTAA-------T-AATCA---TAA-TGG----TT-----GTC--CAA-TAAAT-ATGATG-AAA-TA-TGATTTTGATACCGAATAAT-AAAA--------------AT-TATGAATTC--AAATT-AAC---TA-----AGTT----TACCAT-ACGTAATCATT-ATATCATATCCAAAGA--TCA-TACTCCCTGT-GTCTGAt
gi|6 : AT----------------AAA-------T-AATTA---TAA-AGG----TT-----AT---CAA-TAATA-TTGATAAAAA-TG-TGATTTTGATACCGAATAAT-AAAACATGACCACAAATGAT-TATGAATTAC-AAATT-AACTA-CATGTATAGTTAAAATA-CATAACGTAATCGTT-ACATCATATCCAAAGA--TCA-TACT-CCTGTGATCTGAAA
gi|7 : aaattgaaTG-CATTTATAATACATAATT-GATTCCGCCC-GACCAAGTATT-GT-T-TGAAA-CCCGATT--GATAATCT-G-TGTA----ACGTATATATA-TGTACCACCTTCGCTCTCCT---GTACATAA--C-AAAT--ATGAAA-GAAGAA--CA---AGTCA-T-A-GTG--T-----A-TGTT-GCACTT------TGCCACTAGCGTGACTTTT--ATAATGATAGAACTGAAAA-TTTA--TA--TT--------TAATG-TA-A--TAT------------------GATGTAACTATAAATAAT-TAAGTACCGGT-AATCA---TAA-TGG----TT-----GT---CAA-TAATA-TTGATGAAAA-TA-TGATTTTccgtgtacataaagaatattgaaaagaaatgacaacataaacacgaggaaaggtggaagggcggaggtggttagaaaaattccaataacttcaaaacgatgctgattctgcggcgtcctgaaagagaatgaagaagcgacgcgattctgacaaagttt
gi|8 : aaaaatctattcacAT------------------AAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GTC--CAA-TAAAT-ATGATG-AAA-TA-TGATTTTGATACCGAATAAT-AAAA--------------AT-TATGAATTC--AAATT-AAC---TA-----AGTT----TACCAT-ACGTAATCATT-ATATCATATCCAAAGA--TCA-TACTCCCTGT-GTCTGAAAagcaagcgtaatcaagca
gi|9 : a--------ATG-TATT-------CATAACT-GATTCCGCCC-GACTACGTATG-ATCT-TGAAA-CCCGACT--GATACTCAT--TATA----AAGTATA--CA-TGTACCGCCTTCGCTCTCTT---GTACATAC--A-AAAT--ATTAAA-GAA-AAAACA---AGTAA-T-ccgctacaataaagaatatgaaatataaacatgaggaagtgaggggcggagtggtaagaaaaatctccataacttcaaaacgattattctgcggcgtccgaaaagaatgaagaagcgacgcgatcctgacaaagaacaaaagagatattcccg
blockSeqs : T GTC . CATCTTTT A A ATA T GC C G C C . A TG CTTA TTTA TATA A . CC TT . GAAAA TGG A T . TAGCAT A T ACAGTG TTTTT TG G AT ACTCTCCAGTGG . T CA GATGTAACTATAAATAATTAAGTACCGG C . C . TAAAAGTAA T GGT CA C T T A TATGACCACATACGAA CCA A TACATGTAT AAAA C G G TT TT C G
blockSeqs : . . A . . GC C T . . . . . CTTA . GAA . . C . . AAAA . . . . GTTT . . . TTTT TG G . TTTC . . . TGTATGTAACCATAAATTAATTAA . . C . GTG . GT AA . . T . ATGACCACATATGATG CA . TATTT A C G . . T C G
blockSeqs : . . A . . GC C G . . . . . CTA . TAA . . A . . GAA . . . . T . . . TTT AG T . ATTT . . . GATGTAAACCATAAATAATTAA . . . . GTC . AT CA . . T . CATGACCACAAATGAT C . TAT A . A . . T C G
blockSeqs : . A . . GC C G . . . . . ATA . TA . . C . . AAG . . . . T . . . TTT AT T . TT . . . GAATAGG . . . . GTC . AT GA . . T . ATATG A . TA . . . . . T . .
blockSeqs : . . . GC . G . . . . . CGT . TA . . C . . GAA . . . . T . . . TTT AG A . TT . . . GATTAC . . . . GA . TT GA . . T . AT A . TA . . . . . . . .
blockSeqs : . . . G . G . . . . . CTG . TA . . C . . GAA . . . . T . . . TT A T . TT . . . GATTAA . . . . GT . TA AA . . T . AT
blockSeqs : . T . C . . . . . CAT . TA . . A . . . . . . . T . . . TT . . . AATTAA . . . . AT . AT GA . . . .
blockSeqs : . . T . . . . . TA . A . . . . GATG . . . . GT . AT G . .
blockSeqs : . . . . . . . . G . TA G . .
blockSeqCons : *** C*** GAA** T******* N* ATT********* GATGATAATTAA*********************************** *** **** GT******** NT* GA A** TACT****** A***
originalCons : AAATGTTNGGTTNTAGTTATCGCACCGAAA--------ATG-TATTTATA---CATAATT-GATTCCGCCCCGACGAAGTGTG-GT-T-TGAAA-CCCGATT--GATAATCTTA-TATA----ACGTATA-ACA-TGTACCACCTTCGCTCTCCT---GTACATAC--C-AAAT--ATGAAA-GAAGAAAACA---AGTCA-T-A-GTG--T----TA-TGTT-GCACTT------TGCCACTAGCGTGACTTTTTAATAATGATNGAACTGAAAA-TTTA--TAACTT--------TAATG-TA-A--TAT------------------GAT----------------TAA-------T-AATCA---TAA-TGG----TT-----GT---CAA-TAATN-TTGATGAAAA-TA-TGATTTTGATACCGAATAAT-AAAA-ATGACCACATATGAT-TATGAATTA--AAATT-AACTA-TA-----AGTT---ATA-CATGACGTAATCATT-ACATCATATCCAAAGA--TCA-TACTCCCTGTGGTCTGAAA
finalCons : AAATGTTNGGTTNTAGTTATCGCACCGAAA--------ATG-TATTTATA---CATAATT-GATTCCGCCCCGACGAAGTGTG-GT-T-TGAAA-CCCGATT--GATAATCTTA-TATA----ACGTATA-ACA-TGTACCACCTTCGCTCTCCT---GTACATACC---AAAT--ATGAAA-GAAGAA--CA---AGTCA-T-A-GTGT-------A-TGTT-GCACTT------TGCCACTAGCGTGACTTTTTAATAATGATNGAACTGAAAAN-TTA--TAATT---------TAATG-TA-A--TATGATGATAATTAA-----------------------------------T-AATCA---TAA-TGG----TTGT--------CAA-TAATNT-TGATGAAAA-TA-TGATTTTGATACCGAATAAT-AAAA-ATGACCACATATGAT-TATGAATTAA--AATT-AACTACT------AGTTA---TA-CATGACGTAATCATT-ACATCATATCCAAAGA--TCA-TACTCCCTGTGGTCTGAAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GTGCATCATGTAATCATTAAATTAGAATCCAATGGACTGGCTCCTTATGATTGAAACCGCCATGGACTTCATTAAAAGTTTTCAATAAAGTTCAGACCTCA
Unaligned ( gi|15 ): CAATAACTTCAAAACGATGTTGAATCTGCGGCGTCCTGTAAGAGAATGAAGAAGCGACGCGATCCTGACANT
Unaligned ( gi|16 ): GCGTCTGAAAGAATGAAGAAGCGACGGCGATGCTGACAAAGAACAAGAGATATTTCCC
Unaligned ( gi|18 ): ACAAATGTTTGTTTCTAAATGCATCAAAAATA
Alignments
lowQualScore : 3333 11 33333333 111 1 22222 1111 111111 111111 22222 22222 666666666666666666666666666666666666666666666 11 44444444444444444 11 33333333 1111 1 1
lowQualScore : 1 4444 88 66666666 8 1 000 5 66 2 1 4 4 4 4 0 55 11111 9999 4444 4 0 888 8888 66 5 5 66 777 9999 8 888 444444 5 0 444444 11111 11 0 1 5 5 55555 66 5 5 66 5 888888888888888888888888888888888888888888888 4 4 4 22 4 88 77 4 4 3 5 00000000000000000 33 2 99999999 6 9999 3 9 6 99 99 0 6
lowQualScore : . .... .. ........ . . ... . .. . . . . . . . .. ..... .... .... . . ... .... .. . . .. ... .... . ... ...... . . ...... ..... .. . . . . ..... .. . . .. . ............................................. . . . .. . .. .. . . . . ................. .. . ........ . .... . . . .. .. . .
lowQualScore : 0 5555 55 22222222 0 4 000 0 88 2 1 4 0 0 0 5 55 11111 4444 3333 4 4 888 1111 99 0 0 11 888 4444 9 888 444444 0 2 444444 99999 77 7 0 7 7 99999 99 0 0 99 0 555555555555555555555555555555555555555555555 0 0 0 99 0 44 33 0 0 2 0 22222222222222222 66 5 88888888 7 0000 3 3 7 22 88 8 7
consensus : AAATGTTNGGTTNTAGTTATCGCACCGAAA--------ATG-TATTTATA---CATAATT-GATTCCGCCCCGACGAAGTGTG-GT-T-TGAAA-CCCGATT--GATAATC-TA-TATA----ACGTATA-ACA-TGTACCACCTTCGCTCTCCT---GTACATA-C--CAAAT--ATGAAA-G-AAGAA--CA---AGTC----A-TAGTG---TA------TGTT-GCACTT------TGCCACTAGCGTGACTTTTTAATAATGATNGAACTGAAAANTT-A-TAA---TTT--AAT-G-TA--ATA-TG---------ATG----------A--TAA-----TTAA-------T-AAT-CATAA-TGGTTGT-CAA-TAATATTGATGAAAA-TA-TGATTTTGATACCGAATAAT-AAAA-ATGACCACATATGAT-TATGAATTA--AAATTAACTA-C-----TA-GTT---ATA-CATGACGTAATCATT-ACATCATATCCAAAGA--TCA-TACTCCCTGTGGTCTGAAA
Reference ( family-4654 ) : AAATGTTNGGTTNTAGTTATCGCACCGAAA--------ATG-TATTTATA---CATAATT-GATTCCGCCCCGACGAAGTGTG-GT-T-TGAAA-CCCGATT--GATAATCTTA-TATA----ACGTATA-ACA-TGTACCACCTTCGCTCTCCT---GTACATA-C--CAAAT--ATGAAA-G-AAGAA--CA---AGTC----A-TAGTG---TA------TGTT-GCACTT------TGCCACTAGCGTGACTTTTTAATAATGATNGAACTGAAAANTT-A-TAA---TTT--AAT-G-TA--ATA-TG---------ATG----------A--TAA-----TTAA-------T-AAT-CATAA-TGGTTGT-CAA-TAATNTTGATGAAAA-TA-TGATTTTGATACCGAATAAT-AAAA-ATGACCACATATGAT-TATGAATTA--AAATTAACTA-C-----TA-GTT---ATA-CATGACGTAATCATT-ACATCATATCCAAAGA--TCA-TACTCCCTGTGGTCTGAAA
gi|1 : TAATT-GATTTCTGCTCAACCAAGGATA-AT-CGCAAAA-CCCGAAT--GCCAAT--TACTAGA----A-----A-GCT-TATACCACCTTCGCCTTCTTTCGATATCTA-CTACAAAA--ATGAAAAG-CAAAA--AA---AACCCCATA-TATTT---TA------GGTT-TTTCTT------TTCCGCTAGCGTGAC--TTTAATTAT-ATTGAACTGAAAAGTTGA-TAC---TTC--CAT-GATA--ATA-TA---------AGT----------A---AA-----TTAGGT-----T-AATGGACAA-TTGTTTG-CAA-TGATA-TGAT-AAAA-TG-TGATTTTGA-ATGAAAT-AT-AAAA-A
gi|10 : ttttA--TA---AGTT----AATGGTG---TA------TGTC-GCACTT------CACCACCAGCGTGAC--TTTAACAATGGTTGGAGTGGAAAGTT-A-TAACTCTCC--AGTGG-TATTGTA-TA---------A------------A--TGA-----TTAC-------TCGGC-CATTT-TGTTTGA-CAA-TAATGTTGATCAAAA-TA-TGAATTTaaaacattttttgggaccccaacccaatagtaaataaattttaggatattaattttactaattaatagagacatgcatgacctagtcattgccaaaaaagaatccacggaatatgttaactccttgtaatgtgactaatacatgtacctatagtttgatttaaacctttttaatcaagttcatactccatggagaagaggcgcagagaaagcttagccacaaaggcatgcacttaaaacacacatgt
gi|11 : TTTATA---CATAATT-GATTCCGCCC-GACGAAGTGTG-GT-T-TGAAA-CCCAATT--GATAATCT-A-TATA----ACGTATA--CA-TGTACCACCTTCGCTCTCCT---GTACATA-C--CAAAT--ATGAAA-G-AAGAA--CA---GGTC----A-TAGTG---TA------TGTT-GTCCTT------TGCCACTAGCGTGAC--TTTAATAATGActaatgatttcacagcgtgaaatttaaacaatac
gi|12 : --AAC-G-TA--GTA-TG---------ATGTAATT-----A--TAACTAGTTTAAAAG----T-AAC-AATAA-TGGTTGT-CAA-TAAT-------------A-TGATTTTGATACAGAATAAT-GAAACATTACCACCTTTGAC-TATGATTTA--
gi|14 : tttccAA--------ATG-TATTTATT---CATAATT-AATTCCG-CCCGACTAAGTATG-AT-G-TGAAG-CCCGATG--GATAATA-TA-TATA----ACGTAT--ACA-TGTACCAC
gi|17 : atATTCC-TCCCGACGAAGTGTG-GT-T-TGAAA-CCCAATT--G
gi|2 : -T-CGAAA-CCCTATT--AATTAACGT--TATA----ACGTAGA-AT------CTATCTACA------T---GTA--TA-C--AAAAT--ATGAAA-G-AAAAG--CA---AATC----A-TAATG---TAGCATAATGTTTGAATTTACAGTGTGCCGCTAGCATGACTTT--AATTATGATTGAACTGAAGAGTT-AATTA---TTTCCAGT-G-TA--ACA-T----------ATG----------A----A-----TAGG-------T-GAT-CATAACTGTTTG--CAA-TAATATTGATCAAAA-TA-TGATTTTGATATAGAATAAT-AAAATATGACCACATACGAA-TATG-ATTA--TGA-TA--TA-C------A-GGT---ATA-CATGACGTAATTATT-ACATAAGATCCAAGGA--TCA-GA-------TGGTCTGAAA
gi|3 : ATGTTGG--TATAGTTATCGCACCGAAACATCTTTTATGATATTTATA---CATAATTTGATTCCGCCC-GACGAAGTGTGCGT-T-TGAAAACCCAATT--AATAATCTTA-TATATTTAACGTATA--CA-TGTACCCCTTTCGCTCTCCT---GTACATACC--CAAAT--ATGAAA-G-AAGAA--CA---AGTC----ATTAGTG---TA------TGTT-GCACTT------TG-CA-TAGCGTGAC---TTAATAATGATAGAA-TGAAAATTT-A-T-A---TTT--AAT-G-TA--ATATTGTATGTAACCATA----------AATTAA-----TTAA-------T-AAT-CATAA-TGGTTGTGCAATTAATATTGATGAAAA-TATTGATTTTGATACCG-ATAAT-TAAA---------ATATG-----TGAATTACCAAATTAA--A-C-----TATGTT---ATA-CATGACGTAATCATTGACATCATATCCAAAGATTTCATTACT-CTTGTGGTCccgtcatggacttgattaaaccttttcaatccagttcaaacttcaagagaagaggggcgagagaaaagctagcctccaagtgcatacacctacattgtacatgca
gi|4 : AAATGTTTGGT-CTAA--ATTGCATCAAAA--------AT--TATTT-TA---CATAATT-GATTCCGCCCCGACGAAGTGTG-TT-T-TGAAA-CCCAATTTGGATAATCTTA-TATA----ACG-ATA-ACA-TGTACCACCTTC-CTCTCCT---GTACATA-C--CAAATTTATGAAA-G-AAGAAAACATGGGGTC----A-TAGTGGTTTA------TGTT-GTCCTT------TGCCACTAGCGTGACTTTTTAATAATGATATAACTGAAAATTT-A-TAAT--TTT--AAT-G-TA--ATA-TG---------AT--------------TAA-----T-------------AT-CATAA-TGGTTGT-CAA-TAAATTTGATGAAAACTA-TGA-TTTGA-ATCGAATAATAAAAA-ATGACCACATATGATGTATGAATTA--CAATTAACTATT-----TA-GTT---ATA-CATGACGTAATCCTT-ACATCATATCCAAAGA--TCA--ACTCCTTGTGGTCTGAAA
gi|5 : ATA---CATAATT-GATTCC--CCCGACGA-GTGTG-GT-T-TGAAA-CC-AATT--GATAAC--TA-CATA----ACGTA---ACAATGTATCACCT-CGCTCTCCT---GTACATT-A--CAAAT--ATGAAA-G-A------CA---A-TC----A-TAGTG---TA------T-TT-GCACTT------TGCCACTAACGTGACTT---AATA-TGATA-AACTGAAAAAAT-A-TA----TTT--AAT-G-TA--ATA-TG---------ATGTAAACCATAAA--TAA-----TTAA-------T-AAT-CATAA-TGGTTGTCCAA-TAAATATGATG-AAA-TA-TGATTTTGATACCGAATAAT-AAAA--------------AT-TATGAATTC--AAATTAACTA--------A-GTT----TACCAT-ACGTAATCATT-ATATCATATCCAAAGA--TCA-TACTCCCTGT-GTCTGAt
gi|6 : TG----------A---AA-----TAAA-------T-AAT-TATAA-AGGTTAT-CAA-TAATATTGATAAAAA-TG-TGATTTTGATACCGAATAAT-AAAACATGACCACAAATGAT-TATGAATTAC-AAATTAACTA-CATGTATA-GTTAAAATA-CATAACGTAATCGTT-ACATCATATCCAAAGA--TCA-TACT-CCTGTGATCTGAAA
gi|7 : aaatTG-CATTTATAATACATAATT-GATTCCGCCC-GACCAAGTATT-GT-T-TGAAA-CCCGATT--GATAATC-TG-TGTA----ACGTATATATA-TGTACCACCTTCGCTCTCCT---GTACATA-A--CAAAT--ATGAAA-G-AAGAA--CA---AGTC----A-TAGTG---TA------TGTT-GCACTT------TGCCACTAGCGTGACTTTT--ATAATGATAGAACTGAAAATTT-A-T-A---TTT--AAT-G-TA--ATA-TG---------ATGTAACTATAA-A--TAA-----TTAAGTACCGGT-AAT-CATAA-TGGTTGT-CAA-TAATATTGATGAAAA-TA-TGATTTTccgtgtacataaagaatattgaaaagaaatgacaacataaacacgaggaaaggtggaagggcggaggtggttagaaaaattccaataacttcaaaacgatgctgattctgcggcgtcctgaaagagaatgaagaagcgacgcgattctgacaaagttt
gi|8 : aaaaatctattcac----------A--TAA-----TTAA-------T-AAT-CATAA-TGGTTGTCCAA-TAAATATGATG-AAA-TA-TGATTTTGATACCGAATAAT-AAAA--------------AT-TATGAATTC--AAATTAACTA--------A-GTT----TACCAT-ACGTAATCATT-ATATCATATCCAAAGA--TCA-TACTCCCTGT-GTCTGAAAagcaagcgtaatcaagca
gi|9 : a--------ATG-TATT-------CATAACT-GATTCCGCCC-GACTACGTATG-ATCT-TGAAA-CCCGACT--GATACTCAT--TATA----AAGTATA--CA-TGTACCGCCTTCGCTCTCTT---GTACATA-C--AAAAT--ATTAAA-GAAAAAA--CA---AGTA----A-Tccgctacaataaagaatatgaaatataaacatgaggaagtgaggggcggagtggtaagaaaaatctccataacttcaaaacgattattctgcggcgtccgaaaagaatgaagaagcgacgcgatcctgacaaagaacaaaagagatattcccg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GTGCATCATGTAATCATTAAATTAGAATCCAATGGACTGGCTCCTTATGATTGAAACCGCCATGGACTTCATTAAAAGTTTTCAATAAAGTTCAGACCTCA
Unaligned ( gi|15 ): CAATAACTTCAAAACGATGTTGAATCTGCGGCGTCCTGTAAGAGAATGAAGAAGCGACGCGATCCTGACANT
Unaligned ( gi|16 ): GCGTCTGAAAGAATGAAGAAGCGACGGCGATGCTGACAAAGAACAAGAGATATTTCCC
Unaligned ( gi|18 ): ACAAATGTTTGTTTCTAAATGCATCAAAAATA