lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111 1111111
lowQualScore : 444444444444 1 3 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 11 1 11 55 2222222222222 1111111111111111111111111111111111 1 11 99999999999999999999999999999999999999999999999999999999999999 1 666666666 444444444 666 1 333333 1 1 2222 1 66666666666666666 1 1 222 444 111 2222 22222 4 33 555 88888 1 333 1 2 1 3333333 4 33 3 4 4 2222 55555 999999999999999999999999999999 11 2 444 3333 4 1 1 1 4 333333 1 4 4 4 4 55 8888 44 11 33333333 66666 2 11 1 1 4 777777777 55 2 1 33333 4 1 4 11 55 1 99999 666 6666 4 4 55555 999999999999 55 4 999999 1 3333 55555 77777777777 555555 4 444 4 11 3333333 55 1 1 666
lowQualScore : 5 0 777777777777 0 2 6 666 3 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8 0 5 77 4 0 33 5 66 66 5 00 8888888888888 4444444444444444444444444444444444 8 5 0 11 8 8 8 11111111111111111111111111111111111111111111111111111111111111 2 0 6 555555555 000000000 6 111 7 7 7 222222 6 7 11 7 7777 0 3 22222222222222222 6 7 5 777 222 2 444 3333 00000 0 6 6 7 3 6 55 333 0 8 3 55555 3 777 6 3 6 3 1111111 8 0 33 0 0 0 4444 4 2 11111 3 111111111111111111111111111111 88 0 111 6 1111 0 5 5 6 5 0 111111 5 0 0 0 6 0 55 7777 6 66 6 88 44444444 44444 6 2 0 4 4 4 99 5 3 5 3 6 0 222222222 55 6 0 5 3 99999 0 7 8 5 0 22 55 7 22222 111 6 1111 0 6 0 22222 6 999999999999 6 55 0 000000 7 6666 44444 55555555555 888888 0 666 0 22 0000000 55 7 5 111
lowQualScore : . . ............ . . . ... . ....................................................................................... . . . .. . . .. . .. .. . .. ............. .................................. . . . .. . . . .............................................................. . . . ......... ......... . ... . . . ...... . . .. . .... . . ................. . . . ... ... . ... .... ..... . . . . . . .. ... . . . ..... . ... . . . . ....... . . .. . . . .... . . ..... . .............................. .. . ... . .... . . . . . . ...... . . . . . . .. .... . .. . .. ........ ..... . . . . . . .. . . . . . . ......... .. . . . . ..... . . . . . .. .. . ..... ... . .... . . . ..... . ............ . .. . ...... . .... ..... ........... ...... . ... . .. ....... .. . . ...
lowQualScore : 0 1 444444444444 1 3 9 444 6 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 4 7 11 0 0 44 0 99 99 0 00 8888888888888 4444444444444444444444444444444444 0 6 6 00 0 0 0 00000000000000000000000000000000000000000000000000000000000000 5 0 0 000000000 888888888 0 777 3 0 3 777777 0 3 55 0 8888 0 2 88888888888888888 0 0 0 555 555 5 000 0000 00000 0 0 7 3 2 0 00 222 8 8 2 00000 3 777 0 3 7 3 3333333 2 0 22 0 0 0 0000 0 5 55555 0 000000000000000000000000000000 55 0 555 0 5555 0 0 0 0 0 0 555555 5 0 0 0 0 0 00 0000 0 00 0 00 00000000 00000 0 5 0 0 0 0 55 0 0 5 0 0 0 555555555 00 0 0 5 0 55555 0 3 3 0 0 00 00 0 00000 000 0 0000 0 0 0 00000 0 000000000000 0 00 0 000000 0 5555 00000 00000000000 000000 0 000 0 00 0000000 00 0 0 000
consensus : TAATAA-TACCATAT--TTGTATAGAGCACCCTTTTCA-TACAACAT---GTACGCTCAAAGG-TGCTTTAC-----------AAT-GC--ANATA-TAATA--ATAG-A-G--------ATA--ATATAATAT--A--AAT-A-GATA-T-ATAAA-ATACCATAAAA-TCA-CCAAAAT-AAAA-CAT-T--ACTA--TTAA-GATCGATGACAA-G---G-----GTTTTTTTTTG-T------GGTTTTTTTTTGG----GA----TCT-GAAAAACAAAGATACAA--T-A-A-TACGCTAAATT-AAA----TA--------A------------GAATA-AACATCAGCAGTTTAAAAAGCATATTGAAATG-GTAATGGG-GT--CACGCACG-A-CACA-ACAGTACTCGATTATGAATACATTAAAACATATAAAACATAAAA---A--AAAAAA-TGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCA-GACAGACAAAAT-AAT---CT-TGTT-AAACTGAAAATTAGTCCTGGAAAAGC-CTTGATGG---AAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGACT-TTTTGGAACAAC-TAGAGTG--ACCGATTGTTTT-GTCGACCTAAGATTT-CGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTGNCNTAAG-TATTTTGTNCTATNNNGGCAACCNATGCTACACAGCAACCAAGTNTCTCTTAGTCTTTGGTGTTATAATGGTCGTAACGAGGGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAACGAGNGATTACAATAATCT-AACCT-TGATGTAACTCGGGT-GTTCACAAGAAATTTAGTT-GCATCTGTTGTA--ATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATA--AAAAGATCTGCTGACAGAATTCACTTGTTGTTCAATATCCATTCCTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGNTCGAAGGGNTNANTTTTTGANTCACCCACTGTCNCTGAAATGTTTCTNATTAGACTTGCATTACGACCCGGGCTGCAAATACAATGACCTCGGTCTTANCTGTGTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGACGTGTAGACAACGCTCAATGCGATGT-AATGTTCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAA--ATGATAGATAA-TT--GAGTCATCAGCGTAAAAATGGTGATCAAG--CCATGATATCTACAGATG-GA-ACCAACT-GTTTTGTATACA-TTGTATATGAATTTGGGGCCCAGACATGAC--CCTTGCGG--TACACCG-AATTCATTACCAA-GGACCTAGACTTGNNNNNNNNNNNNNNGACCGTTTGTTGACGATCACTGAGGTAAGACAGATATCCAGCCTAGTACGTGATTTGCCTGTTATTCAACAGATGGTGAAGTCGGTGCAATAG-GGTAG-TGTGGTCAATAGTTCTCAAATGCAGCGG-AAAGATCTAGCATCAC-------AAGTACAG--TGACATCATTTTGGTCTAAAGATTGAG
Reference ( gi|1 ) : TAATAA-TACCATATATCTGTATATACCATCCTTTTCACTACAACAT---GTACGCTCAAAGG-TGCTTTATAT---AA--AAAATGGCG-AAGTAGTAACA--ACAGTATG-AAACGTTATATTATATAATAT--ATAAAT-A-GATA-T-ATAAATATAGCATAAAA-TCC-CCAAAGT-AAAA-TAT-T--ACTA--TTAA-GATCT-TGACCA-G---G-----GTTTTTTTTTGGT------GGCTTTTTTTTGGGGGGGAGGGGTCT-GAAAAACAAAGATACAA--T-A-A-TACGC--------------TA--------A------------GAAT--AACAT---T--TTTAAAAAGCATATTGAAATG-GTGATGGGAGTCCCACGCACG-A-CACA-ACAGTACTCAATTAT-T-TACATTAAAACATATAATACATAAAA---A--AAAAAATTGTACCATTAGAAATAGAAATTTTAAAAC-CGCACAGTCA-GACAGACAAA---AAT---CTCTGT--AAGCTGAAAAATACTCCCGGAAAAGTCTTTGATGG---AAAA--TGTGTTTTC-----AGTGATTTCTTGAATAACACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGACATTCACCAGTTTTGGGGCTGATTTGATTTGAAACATCGATCCCCATAAGTAACGGTTC-----TTTTGGAACAAC-TAGAGTGACACCGACTGTTTT-GTCGACCTAAGA-TT-CGGCGAGGC-TATATACCTACTAGATATCG-TTGATATAAATCTGGACACTCATCATGTAA-GCTTTGTAAGTAACGTAAGATCTTTTATATT-T--------CCAATGT-------------AGTTTCTCTTAGTCTT-GGTGTTATAGTGGTCGTAACAAGGG-TCCTGCATACGATGACGTGCGGCAGTGTTTTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAA-ACCCACCAAA--AGA-ATTACAATAATCTGAACCTATGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCTCAAGATTTGCTGACAGAATTCACTC-TTGTTCGATATCCATTCTTGGAGTCAAGCGATGAACACCAAGATTACTTTGAACACAGGTTGA-GGATTTATTTTTTGATTCACCCACTGTCACTGAAATGTTTCTAACTAGATTTGCA-TACGATCCAGAATGCAAATAT--TGATCTC-GTCTTATCTGAGTTGAGTTTCAAC-TATTGCCATGCATCCAAGACACAATGTCGTGTAGACAACGCTAAATGCGATGTCAATGTCTTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGTTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAAGCCCATGATATCTATAGATGAGACACCAACTGGTTTTGTGTACATTTGTATA-GAA-TTGGGACC---ATCTGACCACCTTGCAGGTTACACCGAAATTCATTACCACTGG--CTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGTTCACTGAGGTAAGATAGATATCCAGTCT--TA-GTGATTT-----TT-TCTAACAGATGGTGAAGTCGGTGC-ACAGAGGTAGTTGTGGTCAATAG-TGTCAAATGCAGCGGAAAAGATTCAGCATCACCAAGTCAAAGTACAGACTGACTTCATTTTTGTCTAAAA--TGAG
gi|3 : TAATAA-TACCATATTT-----TATAGCA-CCTTTTCA-TACAACAT---GTACGCTCAAAGG-TGCTTTAC-----------AAT-GC--ATATA-TAATA--ATAG------------ATA-TATA-GATAT-----AAT-A--------------ATACCATAAAA-TCA-CCAAAATAAAAA-CAT-T--ACTA--TTAA-GATCGATGACAA-----------GTTTTTTTT------------CTTTTCT--------GAAAAACCT-GAAAAAC-AAGATACAA--TAA-A-TACGCTAAATTAAAACA--TA--------A------------GAATA-AACATCAGT--TTT--AAAGCATATT-AAATG-GTAATGGG-GT-ACACGCACGCA-CAC--ACAGTACTCGATTATAA-TACATTAAAACATATAAAACA-AAAACATA--AAAAAAATGTACCATTAAGAATAGAAATATTAAAA--CGCACAGTCA-GACAGACAAAATTAAT---CT-TGTTAAAACTGAAAATTAGTCCT-GAAAAG--CTTGATGGAAAAAAA--T-TGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATG-TTTGGAAGGGCATTCCACAGTTTTGGGGCT-ATTTA--TTGAAACATCGATCCCCATAAGTAACGGTTCGACTTTTTTGGAACAACATAGAGTG--ACCGATTGTTTT-GTCGACCTAAGATTT-CGGGCAGGCTTATATACGT-TTAGTAATCGCTTGATATA
gi|6 : aataatacataaTAATAA-TAC---ATATTTGTATAG--CACCCTTT-CA-TACAACAT---GTACGC-CAAAGG-TGCTTTAC-----------AAT-GC--ATATA-TAATA--ATAG-------------------ATAATA------------GAT----ATGGATATACCAT-AAA-TCA-CCAAAATAAAAA-TAT-T---CTA--TTAA-GATCGATGACAA-G---GGTTTTGTTTTTTTTTGTT------GTTTTTTTTTT------------TCT-GAAAAAACAAGATACAA--T-ATA-TACGCTAAATTTAAAATATTA--------A------------GAATA-AACAT---CAGTTT--AAAGCATATTGAAATGTATAATG-------TACGCAC--A-C----ACAGTACTCGATTATGTATACATTAAAAC-TATAA
gi|13 : aatagTAATAA-TACCATAT--TTGTATAG--CACCCTTTTCA-TACAATAT---GTATGCTCAAAAG-TGCTTTAC-----------AAT-GC--ATATA-TAATA--ATAG-------------------ATAATA------------GATA-TAATA---ATACCATAAAA-TCA-CCAAAAT-AAAA-CAT-T--ACTA--TTAA-GATCGATGACAA-G---G-----GTTTTTTTTT-TT------GGTTTTTTTTTa
gi|9 : taaaTAATAA-TACCA-ATA-CTTTGTATAACACCCTTTTCATAACAACAT---GTACGCTCAAGGG-TGCTTTAC-----------AAT-GC---ATTA-TAATA--ATAGAATA-TAAAGTAATACCATAAAATttt
gi|12 : taataataataatgaaagtgaTAATAAATACCATAT---TGTATTCAGCACCCTTT-CA-TACAACATTGTGTACGCTCAGAGGTTGCTTTAC-----------AAT-GCA-TAATA-TAATA--ATAG-------------------ATAATAT--AT---T-A-CA-A-T----AATACA-CATAAAAGTCA-CCAAAAT-AAAA-CAT-TTCATTATTTTAA-GATCGATGACAA-G---G-----GTTTTcacgaaaataccaaacccatgtactcattaagactgcgatgaaaaggcttttctggaaaaacctgaaaaaacaaagatcacaataaatagaaatattaaaac
gi|21 : ataatagataagtaaattaaTAATCA-TACCATAT--TTGTATAG--CACTCTTTACA-TACAACAT---GTACGCTCAAAGG-TG
gi|15 : aataataaaTAATAA-TACCATAT--TTGTATAG--CACCCTTTTCA-TACAACAT---GTACGCTCAAAGA--GACCTGT-T---AATTAAAGTAAC---AGCA-TAAGAGCACAATATGTACACG-TACA-TATAGAGT--------AT-A-GATA-T-GTA
gi|11 : AA-TACCATAT--TTGTATAG--CACCCTTTTCA-TACAATAT---GTATGCTCAAAGC-TG-TTTAC-----------AATG-------------CA------TATA-AA----TATA-GATATAG-AT--ATAAAT-A--------------ATACCATAA----CCACCAAAAT--AAA-CAT-T--ACTA---TGA-GATCGATGACAAGG---G-----GTTTTTTTTTG------------TTTTTTTGc
gi|7 : ATATTTGTA---AGCGACCTTTTCA-TACAACAT---GTACGCTCAAA-G-TGC--TGTAC---AA--------GCA-ATATAAT-ATA--ATAATAAG-A-----TATA----ATAATACCAATAAATCACAATAGT-AAAAACATACTATAAAttgttgttttttgttttttttttttttatga
gi|18 : tataataaaaataaaataagaaagccTATAGCACCCTTTTCA-TACAACAT---GTACGCTCAAAGG-TGCTTTATATGGGGA--AAAGTTGTT-AATAAGTAATA--ACAcgatgacaaaggttttggaaaaaactgaaaaacaagatacaaattaatacgctatttaaaacaaaatcaaacatcagttcaaagcatattgaaatggtaatggagtacacaccagcacaca
gi|16 : CACCCTTTTCA-TACAACAT---ATACGCTCAATGG-TGCTTTAC-----------AAT-GCGTATATAATAATA--ACAt
gi|7 : agATATAATAT--AATAAT-A--AGA-T-ATAATAATACCAATAAA-TCA-CAATAGT-AAAA--ACAT--ACTA--TAAACGAT----GACAA-A---G-----GTT-------------------------TTGGAAAAAA-----CT-GAAAAACAA-GATACAAATT-A-A-TACGC--------------TATTTAAAACA------------AAATCAAACAT---CAGTTCAAA--GCATATTGAAATG-GTAAT-GGAGT---ACACACC-AGCACA-ctttactattaagatcgatgacaaggttggtttttttctgaaaaacctgaaaaaca
gi|4 : tataataaaaataaaataagaaagccatatttgtaagcgaccttttcatacaacatgtacgctcaaagtgctgtacaagcaCATAAAA-TCA-CCAAAAT-AAAAACAT-T--ACTA--TTAA-GATCGATGAC-A-A---G-----GTTTTTTTTTGGTTTTTTTGGTTTTTTTT--------------CT-GAAAAACAA-GATACAA--T-A-AATACGC--------------TA--------AATTAAAGCATAAGAAT--AACATCAGT--TTTAAA--TCTTATTGAAATG-GTAATGGG-GTAC-ACGCACG---CACACACAGTACTCGATTAT-AATACATTAAAACATATAAAACATAAAA---ATAAAAAAATTGTACCATTAGTGATAGAAATATTAAAAC--ACACAGTCA-G-CAGAAAAA---AATAATCTTTTT--AAACTGAAAATTAGTCCTG-AAAAGC--TTGATGG---AAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGACT-TTTTGGAACAAC-TAGAGTA--ACCGATTGTTTT-GTCGACCTAAGATTT-CGGGCAGGCTTATATACTT-CTAGTAATCG-TTca
gi|16 : acAAT-AACA-CTT-T--ACTA--TTAA-GATCGATGACAA-GGTTG-----GTTTTTTTCTGtg
gi|22 : agcacccttttcatacaacatatacgctcaatggtgctttacaatgcgtatataatTTTGTTTTGGT-------GTTTTTTTTTGGGGGGGGGGGGTCCAGAACAACAAAGGTGTAA--T-A-A-aaaaacctgaaaaaca
gi|14 : AAAACCTGAAA---A--AACAAA--G-ATCACAATAAATAGAAATATTAAAACGCCCACAGTCAGGACAGACAAAAT-AAT---CT-TGTTCAAACTGAAAATTAGTCCTGATTAAATCCCTGAT--------A--T-TCTTTTCTTGGAAGTGACTTCCT
gi|2 : CATTAGAAATAGAAATATTAAAAC--GCACAGTCA-GACAGACAAA---TAT---AT-TGTT-AAACTGAAAATTAGTCCTG-AAAAGC--TTGATGG---AAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACA-AG-GTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTC--CAGTTTTGGGGCTA---TGATTTGAAA--TCG-TACCCATAAGTAACGGTTCGAC--TTTTGGAACAAC-TAGAGTGAC---GATTGTTTTTGTCGACCTAAGA-TTTCGGACAGCT-TATATACTT-CTAG-TAACGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTGACGTAAG-TATTTTATATT-TTGT-----CCTATACTACACAGCAACCAAATGTTTCTTAGTCTTTGGTGTTA--ATGGTCGTAACGAGGG-TT-TGCATACGA-GACGT-CG-CAGTGTTCTGAACA-GTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAA--AGAGATT-CAATAATCT-AACCT-TGATGTAACTCGGGT-GTTCACAAGAAATTTAGTT-GCATCTGTTGTA--ATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATA--AAAAGATCTGCTGACAGAATTCACTTGTTGTTCAATATCCAT--CTGGAGTCAA--GACAGACACCAAGA----TTCGAACACAGGTTGA-AGGATTAATTTTTGAATCA-CCACTGTCCCTGAAATG-TTCTCATTAGATTTGCATTACGA--CGGA---CAAATATAATGACCTC-GTC-TATC-G---TGAGTTTCAACATATTGCCATGCATCCAAGACAC-ATGTCGT
gi|23 : ---AAAA--TGTGTTTTC-----AGTGATTTCTTGAA
gi|20 : aaggcattggtgttccaaCATGTTTTGGAAGGGCATTCCACAGATTTGGGACTA--TTGATCTGAAAag
gi|24 : ATTCCACAGTTTTGGGGCTA--TTGATCTGAAAAATCGAgtagccctaaaaagtaacttcaa
gi|8 : ATACTT-CTAGTAATCGCTTGATATAAA-CTGAACACTCATCATGTAAAGCT----AAGTATCTTA---TATTTTGTCCTATACAGGCAACCAATGT-------------AGTT-CTCTTAGTCTT-GGTGTTATA-TGGTCGTAACGAGGGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAACGAGC-ATTACAATAATCT-AACCT-TGATGTAACT
gi|10 : TATCCATTCTTGGAGTCAAGC-ATGA-CACCAAGATT---TCGAACACAGTTCGAAGGATTAATTTTTTAAT-CACCCACTGTCACTGAAATATTTCTAATTAGACTTGCATTACGACC--GGCTGCAAATACAATGACCTCGGTCTTAGCTGTGTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|26 : CAACATATTGCCATGCATCCAAGACACAATGACGT
gi|5 : GTAGACAACGCTCAATGCGATGT-AATGTTCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAA--ATGATAGATAA-TT--GAGTCATCAGCGTAAAAATGGTGATCAAG--CCATGATATCTACAGATG-GA-ACCAACT-GTTTTGTATACA-TTGTATATGAATTTGGGGCCCAGACATGAC--CCTTGCGG--TACACCG-AATTCATTACCAA-GGACCTAGACTTG
gi|19 : GACCGTTTGTTGACGATCACTGAGGTAAGAC-GATATCCAGCCTAGTACGTGATTT-----cagaagataatccagtctagtgatttgcctgttattcaacagatggtgaagtcggtgcaatagggtagtgtggtcaatagttctcaaatgcagcggaaagatctagcatcacaagtacagtgacatcattttggtctaaagattgag
gi|5 : AAGATA---ATCCAGTCT---A-GTGATTTGCCTGTTATTCAACAGATGGTGAAGTCGGTGCAATAG-GGTAG-TGTGGTCAATAGTTCTCAAATGCAGCGG-AAAGATCTAGCATCAC-------AAGTACAG--TGACATCATTTTGGTCTAAAGATTGAGgcctgttattccatacagat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TATAGCACCCTTTTCATACATTTACACTCAGGCTGATTTACAATGCTATATATGATATGATATAGATTAATAATACCATAAATCATCCAAAATAAAACATTAC
Unaligned ( gi|25 ): AATAATAAATAATAATGCCATATTTGTATAGCACCCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111
lowQualScore : 222 222222222222222222222222222222222222222222222222222222222222 11 3333333333333333333333333 66666666666666666 1 11 4444 1 555555 11111 3333 22 1 33 111 11 22 22 111 2222 1 111 11111 11 1 111 1 1 111 11 2222222222222222222222222222 1 2 111 11 1 333333 1 1 2 2 22 3333 1 111 1 2222 2222222 2 1 2 22 33333 22 2222 2 2 1 1 222 22 22 2 22 11 11111111111111 11 1 22 1 1 1 2 2 1 2 6666666 22 11
lowQualScore : 3 3 3 55 222 3 3 555 3 3 999999 3 4 7 3 55 999999999999999999999999999999999999999999999999999999999999 8 4 4 7777 22 3 55 4 55 55 4 3333333333333333333333333 0 33333333333333333 5 1 7 6 99 6 3 44 1 5555 0 000000 33333 8 8 0000 11 8 0 5 11 3 777 33 33 3 88 88 8 666 0 8 88 8 0000 9 6 111 3 2 66666 8 2 3 0 99 5 0 2 33 0 666 0 3 0 2 3 8 0 3 3 7 7 11 1 333 3 33 7777777777777777777777777777 4 3 888 6 00 3 6 6 6 6 111111 7 3 3 0 0 77 4444 5 7 0 111 0 2 4444 7 1 0 7 6 11 1 1 6 1 6 1 7 1 0 7 9999999 88 3 7 1 7 6 3 3 4 2 0 77 4 77777 77 1111 0 0 5 5 000 3 77 77 0 33 88 44444444444444 4 99 3 0 7 22 6 7 3 3 5 0 0 5 2 0 5555555 77 4 2 88
lowQualScore : . . . .. ... . . ... . . ...... . . . . .. ............................................................ . . . .... .. . .. . .. .. . ......................... . ................. . . . . .. . . .. . .... . ...... ..... . . .... .. . . . .. . ... .. .. . .. .. . ... . . .. . .... . . ... . . ..... . . . . .. . . . .. . ... . . . . . . . . . . . .. . ... . .. ............................ . . ... . .. . . . . . ...... . . . . . .. .... . . . ... . . .... . . . . . .. . . . . . . . . . . ....... .. . . . . . . . . . . .. . ..... .. .... . . . . ... . .. .. . .. .. .............. . .. . . . .. . . . . . . . . . . ....... .. . . ..
lowQualScore : 6 6 6 00 666 1 1 444 1 1 666666 6 5 3 6 00 444444444444444444444444444444444444444444444444444444444444 3 0 0 7777 33 6 00 0 55 55 0 7777777777777777777777777 8 99999999999999999 7 4 3 7 22 7 3 00 0 0000 6 444444 44444 0 0 2222 00 0 8 5 00 2 555 88 22 2 00 88 0 888 8 0 88 0 2222 2 7 777 2 5 77777 0 5 2 8 22 0 8 5 22 0 222 0 2 2 5 2 0 8 2 3 3 3 77 0 000 7 00 7777777777777777777777777777 0 7 777 7 33 3 7 7 7 7 777777 3 3 3 0 0 55 5555 0 3 7 777 7 0 7777 3 0 7 3 7 77 0 0 7 0 7 0 3 0 7 3 3333333 00 3 3 0 3 0 2 2 0 5 0 55 0 00000 55 0000 0 0 5 5 555 0 55 55 0 00 00 00000000000000 0 33 3 7 3 33 7 3 3 3 5 0 0 5 5 0 0000000 55 0 5 55
consensus : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG-T-GCTTTACA------ATG-CATA-TA-TAATA--AT-AG-----------A--ATAATATA---------ATATA--A---ATAGATATA-AT-A-ATACCATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-A--TTAAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTG--A---AA--------CCTG-AAAAACAAAGAT-ACAA--TA-A-TACGCTAAA-TTAAAACA-TAAGAATAAACATCAGCAGTTTAAAAAGCATATTGAAATG-GTAATGGG-GTAC--ACGCACGCA-CACAACAGTACTCGATTAT-AATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-T-AATCT-TGTT-AAA-CTGAAAATTAGTCCTGGA--AAAGC-TT-GATGG---AAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGACTTTTT-GGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAATGT-------------AGT-TCTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGAGGGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAA-GAG--ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGACCCGGG-TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
Reference ( family-4587 ) : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG-T-GCTTTACA------ATG-CANA-TA-TAATA--AT-AG-----------AG-ATAATATA---------ATATA--A---ATAGATATATAA-A-ATACCATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-A--TTAAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTG--G---GA--------TCTG-AAAAACAAAGAT-ACAA--TA-A-TACGCTAAA-TTAAA----TAAGAATAAACATCAGCAGTTTAAAAAGCATATTGAAATG-GTAATGGG-GT-C--ACGCACG-A-CACAACAGTACTCGATTATGAATACATTAAAACATATAAAACATAAA---AA--AAAAAAT-GTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-T-AATCT-TGTT-AAA-CTGAAAATTAGTCCTGGA--AAAGCCTT-GATGG---AAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGACTTTTT-GGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTGNCNTAAGTATTTTGTNCTATNNNGGCAACCNATGCTACACAGCAACCAAGTNTCTCTTAGTCTTTGGTGTTATAATGGTCGTAACGAGGGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAACGAGNGATTACAATAATCT-AACCT-TGATGTAACTCGGG-TGTTCACAAGAAATTTAG-TTGCATCTGTTG--TAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATA--AAAAGATCTGCTGACAGAATTCACTTGTTGTTCAATATCCATTCCTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGNTCGAAGGGNTNANTTTTTGANTCACCCACTGTCNCTGAAATGTTTCTNATTAGACTTGCATTACGACCCGGGCTGCAAATACAATGACCTCGGTCTTANCTGTGTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGACGTGTAGACAACGCTCAATGCGATGT-AATGTTCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAA--ATGATAGATAA-TT--GAGTCATCAGCGTAAAAATGGTGATCAAG--CCATGATATCTACAGATG-GA-ACCAACT-GTTTTGTATACA-TTGTATATGAATTTGGGGCCCAGACATGAC--CCTTGCGG--TACACCG-AATTCATTACCAA-GGACCTAGACTTGNNNNNNNNNNNNNNGACCGTTTGTTGACGATCACTGAGGTAAGACAGATA-TCCAGCCTAGTACGTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAATAG-GGTAG-TGTGGTCAATAGTTCTCAAATGCAGCGG-AAAGATCTAGCATCAC-------AAGTACAG--TGACATCATTTTGGTCTAAAGATTGAG
gi|1 : TAATAA-TACCA-TA-TATCTGTATATACCATCCTTTTCACTA-CAACAT---GTACGCTCAAAGG-T-GCTTTATATAAAAAATGGCGAAGTAGTAACA--AC-AGTATGAAACGTTAT-ATTATATA---------ATATATAA---ATAGATATATAA-ATATAGCATAAAA-TCC-CCAAAGT-A--AAA--TAT-T--ACT-A--TTAAGAT--CT-TGACCA-GG-----GTTTTTTTTTGG------TGGCTTTTTTTTG--G---GGGGGAGGGGTCTG-AAAAACAAAGAT-ACAA--TA-A-TACGCTAA--------------GAATAA-CATT-----TTTAAAAAGCATATTGAAATG-GTGATGGGAGT-CCCACGCACG-A-CACAACAGTACTCAATTATT--TACATTAAAACATATAATACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATTTTAAAAC-CGCACAGTCAG-ACAGACAAA-A----ATCTCTGT--AAG-CTGAAAAATACTCCCGGA--AAAGTCTTTGATGG---AAAA--TGTGTTTTC-----AGTGATTTCTTGAATAACACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGACATTCACCAGTTTTGGGGCTGATTTGATTTGAAACATCGATCCCCATAAGTAACGGTTC----TTTT-GGAACAAC-TAGAGTGACACCGACTGTTTT-GTCGACCTAAGATT-CGGCGAGGCT-ATATACCTACTAGATATCG-TTGATATAAATCTGGACACTCATCATGTAA-GCTTTGTAAGTAACGTAAG-ATCTTTTA-TATTT------CCAATGT-------------AGTTTCTCTTAGTCTT-GGTGTTATAGTGGTCGTAAC-AAGGGTCCTGCATACGATGACGTGCGGCAGTGTTTTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAA-ACCCACCAAAAGA---ATTACAATAATCTGAACCTATGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCTCAAGATTTGCTGACAGAATTCACTC-TTGTTCGATATCCATTCTTGGAGTCAAGCGATGAACACCAAGATTACTTTGAACACAGGTTG-AGGATTTATTTTTTGATTCACCCACTGTCACTGAAATGTTTCTAACTAGATTTGCA-TACGATCCAGAATGCAAATAT--TGATCTC-GTCTTATCTGAGTTGAGTTTCAAC-TATTGCCATGCATCCAAGACACAATGTCGTGTAGACAACGCTAAATGCGATGTCAATGTCTTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGTTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAAGCCCATGATATCTATAGATGAGACACCAACTGGTTTTGTGTACATTTGTATA-GAA-TTGGGACC---ATCTGACCACCTTGCAGGTTACACCGAAATTCATTACCACTGG--CTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGTTCACTGAGGTAAGATAGATA-TCCAGTCT--TA-GTGATTT-----TT-TC-TA-ACAGATGGTGAAGTCGGTGC-ACAGAGGTAGTTGTGGTCAATAG-TGTCAAATGCAGCGGAAAAGATTCAGCATCACCAAGTCAAAGTACAGACTGACTTCATTTTTGTCTAAAA--TGAG
gi|10 : TATCCATTCTTGGAGTCAAGC-ATG-ACACCAAGATT--T-CGAACACAGTTCGAAGGATTAATTTTTT-AATCACCCACTGTCACTGAAATATTTCTAATTAGACTTGCATTACGACC--GGCTGCAAATACAATGACCTCGGTCTTAGCTGTGTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|11 : AA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAGC-T-G-TTTACA------ATG-CATA-TA-----A--AT-AT-----------AG-AT--------------------------ATAGATATAAAT-A-ATACCAT--AA-CCA-CCAAAAT----AAA--CAT-T--ACT-A---TGAGAT--CGATGACAAGGG-----GTTTTTTTTTG-------T--TTTTTTGTTG--
gi|12 : TAATAAATACCA-TA-T--T-GTATTCAGCACCCTTT-CA-TA-CAACATTGTGTACGCTCAGAGG-TTGCTTTACA------ATG-CATAATA-TAATA--AT--------------AG-ATAATATA---------TTAC---A---ATA-ATACA----------CATAAAAGTCA-CCAAAAT-A--AAA--CAT-TTCATT-ATTTTAAGAT--CGATGACAA-GG-----GTTTTttgttttttgttttttttttttttatga
gi|13 : ataatagataagtaaattaaTAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAAG-T-GCTTTACA------ATG-CATA-TA-TAATA--AT-AG-----------A----------------------TA--A----TAGATATA-AT-A-ATACCATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-A--TTAAGAT--CGATGACAA-GG-----GTTTTTTTTTT-------TGGTTTTTTTTT
gi|14 : taaaAAAACCTGAA---AA--AACAAA--G-ATCACAATAAATAGAAATATTAAAACGCCCACAGTCAGGACAGACAAA-A-T-AATCT-TGTTCAAA-CTGAAAATTAGTCCT-GATTAAATCCCT-GAT----------AT-TCTTTTCTTGGAAGTGACTTCCTttt
gi|15 : TAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGA-G-ACCTGTTA------AT--TAAA--G-TAACAGCATAAG-----------AGCACAATATGTACACGTACATATA--GAGTATAGATATGTA
gi|16 : AGCACCCTTTTCA-TA-CAACAT---ATACGCTCAATGG-T-GCTTTACA------ATG-CGTA-TA-TAATA--AT-Ac
gi|16 : AAT-A--ACA--CTT-T--ACT-A--TTAAGAT--CGATGACAA-GG--------------T--------TGGTTTTTTTCTGAAA---AA--------CCTG-AAAAACAacactttactattaagatcgatgacaaggttggtttttttctgaaaaacctgaaaaaca
gi|17 : agcacccttttcatacaacatatacgctcaatggtgctttacaatgcgtatataatTATAGCACCCTTTTCA-T----ACAT---TTACACTC--AGGCT-GATTTACA------ATG-C-TA-TA-T-------------------------ATGATATG---------ATATA--G---AT-------TAATA-ATACCAT-AAA-TCATCCAAAAT-A--AAA--CAT-T--AC
gi|18 : TATAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG-T-GCTTTATA------
gi|19 : GACCGTTTGTTGACGATCACTGAGGTAAGAC-GATA-TCCAGCCTAGTACGTGATTTGCCTGTTATTCCATACAGATtggggaaaagttgttaataagtaataacat
gi|2 : CATTAGAAATAGAAATATTAAAAC--GCACAGTCAG-ACAGACAAATA-T-A---T-TGTT-AAA-CTGAAAATTAGTCCTG-A--AAAGC-TT-GATGG---AAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACA-AG-GTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCA--GTTTTGGGGCTA--T-GATTTGAAA--TCG-TACCCATAAGTAACGGTTCGACTTTT--GGAACAAC-TAGAGTGAC---GATTGTTTTTGTCGACCTAAGATTTCGGACAG-CTTATATACTT-CTAGTAA-CGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTGACGTAAGTATTTTATATTTTGT------CCTATACTACACAGCAACCAAATGTTTCTTAGTCTTTGGTGTTA--ATGGTCGTAACGAGGG--TTTGCATACGA-GACGT-CG-CAGTGTTCTGAACA-GTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAA--AGAGATT-CAATAATCT-AACCT-TGATGTAACTCGGG-TGTTCACAAGAAATTTAG-TTGCATCTGTTG--TAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATA--AAAAGATCTGCTGACAGAATTCACTTGTTGTTCAATATCCAT--CTGGAGTCAA--GACAGACACCAAGA----TTCGAACACAGGTTGAA-GGATTAATTTTTGAATCA-CCACTGTCCCTGAAATG-TTCTCATTAGATTTGCATTACGA--CGG---ACAAATATAATGACCTC-GTC-TATC-G---TGAGTTTCAACATATTGCCATGCATCCAAGACAC-ATGTCGT
gi|20 : CATGTTTTGGAAGGGCATTCCACAGATTTGGGACTA--TTGATCTGAAA
gi|21 : TAATCA-TACCA-TA-T--TTGTATAG--CACTCTTTACA-TA-CAACAT---GTACGCTCAAAGG-T-Ggtagccctaaaaagtaacttcaa
gi|23 : aataataaa--AAGGCATT-GGTGTTCCAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AG
gi|24 : ATTCCACAGTTTTGGGGCTA--TTGATCTGAAAAATCGA
gi|25 : TAATAA-TGCCA-TA-T--TTGTAT--AGCACCCT
gi|26 : aataataaaCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|3 : TAATAA-TACCA-TA-T--TT-TATAG--CACC-TTTTCA-TA-CAACAT---GTACGCTCAAAGG-T-GCTTTACA------ATG-CATA-TA-TAATA--AT-AG-----------A--------------------TATA-------TAGATATA-AT-A-ATACCATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-A--TTAAGAT--CGATGACAA-G----------TTTTTT-----------TTCTTTTCTG--A---AAAA------CCTG-AAAAACAA-GAT-ACAA--TA-AATACGCTAAA-TTAAAACA-TAAGAATAAACATCAGT--TTTAAA--GCATATT-AAATG-GTAATGGG-GTAC--ACGCACGCA-CACA-CAGTACTCGATTAT-AATACATTAAAACATATAAAACAAAAACATAA--AAAAAAT-GTACCATTAAGAATAGAAATATTAAAAC--GCACAGTCAG-ACAGACAAA-A-TTAATCT-TGTT-AAAACTGAAAATTAGTCCTG-A--AAAGC-TT-GATGG---AAAAAAATTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTT-GGAAGGGCATTCCACAGTTTTGGGGCTA--TTTATT-GAAACATCGATCCCCATAAGTAACGGTTCGACTTTTTTGGAACAACATAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACGT-TTAGTAATCGCTTGATATA
gi|4 : aataatacataaACCATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-A--TTAAGAT--CGATGACAA-GG------TTTTTTTTTGGTTTTTTTGGTTTTTTTT-------------------CTG-AAAAACAA-GAT-ACAA--TA-AATACGCTAAA-TTAAAGCA-TAAGAATAA-CATCAGT--TTTAAA--TCTTATTGAAATG-GTAATGGG-GTAC--ACGCACGCA-CACA-CAGTACTCGATTAT-AATACATTAAAACATATAAAACATAAA---AATAAAAAAATTGTACCATTAGTGATAGAAATATTAAAAC--ACACAGTCAG--CAGAAAAA-AAT-AATCT-TTTT-AAA-CTGAAAATTAGTCCTG-A--AAAGC-TT-GATGG---AAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGACTTTTT-GGAACAAC-TAGAGTAAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGTTTG
gi|5 : GTAGACAACGCTCAATGCGATGT-AATGTTCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAA--ATGATAGATAA-TT--GAGTCATCAGCGTAAAAATGGTGATCAAG--CCATGATATCTACAGATG-GA-ACCAACT-GTTTTGTATACA-TTGTATATGAATTTGGGGCCCAGACATGAC--CCTTGCGG--TACACCG-AATTCATTACCAA-GGACCTAGACTTG
gi|5 : AGA-AGATAATCCAGTCTAGT----GATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAATAG-GGTAG-TGTGGTCAATAGTTCTCAAATGCAGCGG-AAAGATCTAGCATCAC-------AAGTACAG--TGACATCATTTTGGTCTAAAGATTGAGcagaagataatccagtctagtgatttgcctgttattcaacagatggtgaagtcggtgcaatagggtagtgtggtcaatagttctcaaatgcagcggaaagatctagcatcacaagtacagtgacatcattttggtctaaagattgag
gi|6 : gtagacaacgctcaatgcgatgtaatgttctctgcctgcgaagctttgtccataggtttaaatgatagataattgagtcatcagcgtaaaaatggtgatcaagccatgatatctacagatggaaccaactgttttgtatacattgtatatgaatttggggcccagacatgacccttgcggtacaccgaattcattaccaaggacctagacttgcTAATAA-TAC-A-TA-T--TTGTATAG--CACCC-TTTCA-TA-CAACAT---GTACGC-CAAAGG-T-GCTTTACA------ATG-CATA-TA-TAATA--AT-AG-------------------ATA---------ATAGA--T---ATGGAT---------ATACCAT-AAA-TCA-CCAAAATAA--AAA--TAT-T---CT-A--TTAAGAT--CGATGACAA-GGGTTTTGTTTTTTTTTG-------TTGTTTTTTTTTT----------------TCTG-AAAAAACAAGAT-ACAA--TATA-TACGCTAAATTTAAAATATTAAGAATAAACAT---CAGTTT--AAAGCATATTGAAATGTATAATG------T--ACGCAC--A-C---ACAGTACTCGATTATGTATACATTAAAAC-TATAAA
gi|7 : aatagTAAGAA-AGCCA-TA-T--TTGTA---AGCGACCTTTTCA-TA-CAACAT---GTACGCTCAAA-G-T-GCTGTACA------A-G-CA-A-TA-TAAT---AT-A---------------ATAATA------------------------AGATATA-AT-A-ATACCAATAAA-TCA-CAATAGTAA--AAA--CA--T--ACT-A--TAAA-----CGATGACAA-AG-----GTTT--------------TGG--------AA--A---AA--------ACTG-AAAAAC-AAGAT-ACAAATTA-A-TACGCTATT-TAAAA----CAAAATCAAACAT---CAGTTC--AAAGCATATTGAAATG-GTAATGGA-GT----ACACACC-AGCACA
gi|8 : tataataaaaataaaaATACTT-CTAGTAATCGCTTGATATAAA-CTGAACACTCATCATGTAAAGCT----AAGTATCTTA--TATTTTGTCCTATACAGGCAACCAATGT-------------AGT-TCTCTTAGTCTT-GGTGTTATA-TGGTCGTAACGAGGGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAACGAGC-ATTACAATAATCT-AACCT-TGATGTAACTca
gi|9 : TAATAA-TACCAATACT--TTGTATAA--CACCCTTTTCA-TAACAACAT---GTACGCTCAAGGG-T-GCTTTACA------ATG-CAT--TA-TAATA--AT-AG----------------AATATA-------------A--A---GT-----------A-ATACCATAAAA-TCA-CGAAAAT-ACCAAACCCATGT--ACTCA--TTAAGACTGCGATGAAAA-GG----------------------------CTTTTCTG--GAAAAA--------CCTGAAAAAACAAAGATCACAA--TA-A-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTTGTTTTGGTGTTTTTTTTTGGGGGGGGGGGGTCCAGAACAACAAAGGTGTAATAA
Alignments
lowQualScore : 222 99999999999999999999999999999999999 11 111111 555555555555555555555555555555555 1 1 11 1111 1 555555 22 11 111 111 11 11 11 11 11 222 11 11111 1 1 111 1 1 111 1 333333 666666666666666666 22 1 111 22 1 1 1 1 1 1 1 1 11 2222 1 111 1 2222 3333333 1 33 1 11 22222 11 1 1 1 1 1 1 222 11 11 1 11 11 11 1 22 1 1 1 1 1 1 1 3333333 11 11
lowQualScore : 3 3 3 55 222 3 3 555 3 3 999999 3 0 7 3 0 77777777777777777777777777777777777 1 4 777 4 8 4 4 3 55 55 3 55 4 55 55 4 777777 0 111111111111111111111111111111111 5 5 6 99 6 6 3 44 4444 8 0 000000 0 55 8 8 0 8 66 444 3 777 33 22 3 88 88 8 66 0 8 66 444 11 3 2 66666 8 2 3 0 99 5 0 2 0 3 0 666 0 3 0 2 3 8 0 3 3 7 7 333 1 2 1 888888 888888888888888888 00 3 888 77 3 6 6 6 6 3 3 3 7 3 3 5 5 88 0000 5 7 111 0 2 4444 7 0 7 7 6 6 7 7 6666666 7 3 7 7 33 3 3 1 1 5 88 1 22222 77 5 5 5 5 5 5 000 1 88 88 5 66 88 1 99 3 7 00 6 7 3 3 5 5 5 5 1 5 2222222 88 1 1 88
lowQualScore : . . . .. ... . . ... . . ...... . . . . . ................................... . . ... . . . . . .. .. . .. . .. .. . ...... . ................................. . . . .. . . . .. .... . . ...... . .. . . . . .. ... . ... .. .. . .. .. . .. . . .. ... .. . . ..... . . . . .. . . . . . . ... . . . . . . . . . . . ... . . . ...... .................. .. . ... .. . . . . . . . . . . . . . .. .... . . ... . . .... . . . . . . . . ....... . . . . .. . . . . . .. . ..... .. . . . . . . ... . .. .. . .. .. . .. . . .. . . . . . . . . . . ....... .. . . ..
lowQualScore : 6 6 6 00 666 1 1 444 1 1 666666 6 4 3 6 3 55555555555555555555555555555555555 8 4 888 0 3 0 0 6 00 99 6 00 0 55 55 0 555555 8 111111111111111111111111111111111 7 5 7 22 7 7 3 00 8888 0 6 444444 8 88 0 0 6 0 33 555 2 555 88 55 2 00 88 0 88 8 0 88 222 00 2 5 77777 0 5 2 8 22 0 8 5 0 2 0 222 0 2 2 5 2 0 8 2 3 3 3 000 0 0 0 333333 777777777777777777 00 3 333 00 3 7 7 7 7 3 3 3 3 3 3 5 5 55 0000 0 3 777 7 0 7777 3 7 3 3 7 7 3 3 0000000 3 3 3 3 33 2 2 0 0 0 55 0 00000 55 5 0 0 5 5 5 555 0 00 00 5 55 00 0 33 3 3 77 7 3 3 3 5 5 5 5 0 5 0000000 00 0 0 55
consensus : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG-T-GCTTTACA------ATG-CATA-TA-TAATAATAG------A-----TA--A---TATAATATA---ATAGATAT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTGAAA--------CCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGT--TTTAAAAAGCATATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-TAATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGAGGG-CCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
Reference ( family-4587 ) : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG-T-GCTTTACA------ATG-CATA-TA-TAATAATAG------A----ATA--A---TATAATATA--AATAGATAT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTGAAA--------CCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGCAGTTTAAAAAGCATATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-TAATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGAGGGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGACCCGGG-TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
gi|1 : TAATAA-TACCA-TA-TATCTGTATATACCATCCTTTTCACTA-CAACAT---GTACGCTCAAAGG-T-GCTTTATATAAAAAATGGCGAAGTAGTAACAACAGTATGAAACGTTATATTA---TATAATATATAAATAGATAT-ATAAATA-TAG-CATAAAA-TCC-CCAAAGT-A--AAA--TAT-T--ACT-ATT--AAGAT--CT-TGACCA-GG-----GTTTTTTTTTGG------TGGCTTTTTTTTGGGGGGGAGGGGTCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAA--------------GAAT-AA-CATT-----TTTAAAAAGCATATTGAAATG-GTGATGGGAGTCCCACGCACG-ACACAACAGTACTCAATTATT--TACATTAAAACATATAATACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATTTTAAAAC-CGCACAGTCAG-ACAGACAAA-A---ATCTCTGT--AAGCTGAAAAATACTCCCGG--AAAAGTCTTTGATGGAAAA--TGTGTTTTC-----AGTGATTTCTTGAATAACACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGACATTCACCAGTTTTGGGGCTGATTTGATTTGAAACATCGATCCCCATAAGTAACGGTTC-----TTTTGGAACAAC-TAGAGTGACACCGACTGTTTT-GTCGACCTAAGATT-CGGCGAGGCT-ATATACCTACTAGATATCG-TTGATATAAATCTGGACACTCATCATGTAA-GCTTTGTAAGTAACGTAAG-ATCTTTTA-TATTT------CCAAT--------GTA-------GTTTCTCTTAGTCTT-GGTGTTATAGTGGTCGTAACAAGGG-TCCTGCATACGATGACGTGCGGCAGTGTTTTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAA-ACCCACC-AAA-AGA-ATTACAATAATCTGAACCTATGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCTCAAGATTTGCTGACAGAATTCACTC-TTGTTCGATATCCATTCTTGGAGTCAAGCGATGAACACCAAGATTACTTTGAACACAGGTTGA-GGATTTATTTTTTGATTCACCCACTGTCACTGAAATGTTTCTAACTAGATTTGCAT-ACGATCCAGAATGCAAATAT--TGATCTC-GTCTTATCTGAGTTGAGTTTCAAC-TATTGCCATGCATCCAAGACACAATGTCGTGTAGACAACGCTAAATGCGATGTCAATGTCTTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGTTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAAGCCCATGATATCTATAGATGAGACACCAACTGGTTTTGTGTACATTTGTATA-GAA-TTGGGACC---ATCTGACCACCTTGCAGGTTACACCGAAATTCATTACCACTGG--CTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGTTCACTGAGGTAAGATAGATA-TCCAGTCT--TA-GTGATTT-----TT-TC-TA-ACAGATGGTGAAGTCGGTGC-ACAGAGGTAGTTGTGGTCAATAG-TGTCAAATGCAGCGGAAAAGATTCAGCATCACCAAGTCAAAGTACAGACTGACTTCATTTTTGTCTAAAA--TGAG
gi|10 : TATCCATTCTTGGAGTCAAGC-ATG-ACACCAAGATT--T-CGAACACAGTTCGAAGGATTAATTTTTT-AATCACCCACTGTCACTGAAATATTTCTAATTAGACTTGCATTACGA-CCGGC-TGCAAATACAATGACCTCGGTCTTAGCTGTGTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|11 : AA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAGC-T-G-TTTACA------ATG-CATA-TA-----------------------A--A---TATAG-AT----ATAGATATAA---ATAATAC-CAT--AA-CCA-CCAAAAT----AAA--CAT-T--ACT-A-T--GAGAT--CGATGACAAGGG-----GTTTTTTTTTG-------T--TTTTTTGTTG
gi|12 : TAATAAATACCA-TA-T--T-GTATTCAGCACCCTTT-CA-TA-CAACATTGTGTACGCTCAGAGG-TTGCTTTACA------ATG-CATAATA-TAATAATAG------A---------------TAATATA----T---TAC-A---ATAATACACATAAAAGTCA-CCAAAAT-A--AAA--CAT-TTCATT-ATTTTAAGAT--CGATGACAA-GG-----GTTTTttgttttttgttttttttttttttatga
gi|13 : ataatagataagtaaattaaTAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAAG-T-GCTTTACA------ATG-CATA-TA-TAATAATAG------A--------------------TA--A-TAGATAT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTT-------TGGTTTTTTTTT
gi|14 : taaaAAAACCTGAA---AA--AACAAA--G-ATCACAATAAATAGAAATATTAAAACGCCCACAGTCAGGACAGACAAA-A-TAATCT-TGTTCAAACTGAAAATTAGTCCTGATTAAATCC--CTGAT-------AT-TCTTTTCTTGGAAGTGACTTCCTttt
gi|15 : TAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGA-G-ACCTGTTA------AT-------TA-AAGTAACAG------C----ATA--AGAGCACAATAT
gi|16 : AGCACCCTTTTCA-TA-CAACAT---ATACGCTCAATGG-T-GCTTTACA------ATG-CGTA-TA-TAATAATAgtacacgtacatatagagtatagatatgtac
gi|16 : AAT-A--ACA--CTT-T--ACT-ATT--AAGAT--CGATGACAA-GG--------------T--------TGGTTTTTTTCTGAAAAA------CCTG-AAAAACAacactttactattaagatcgatgacaaggttggtttttttctgaaaaacctgaaaaaca
gi|17 : agcacccttttcatacaacatatacgctcaatggtgctttacaatgcgtatataatTATAGCACCCTTTTCA-T----ACAT---TTACACTC--AGGCT-GATTTACA------ATG-C-TA-TA-T-------------------ATG--A---TATGATATA--GAT-----T-A---ATAATAC-CAT-AAA-TCATCCAAAAT-A--AAA--CAT-T--AC
gi|18 : TATAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG-T-GCTTTATA------
gi|19 : GACCGTTTGTTGACGATCACTGAGGTAAGAC-GATA-TCCAGCCTAGTACGTGATTTGCCTGTTATTCCATACAGATtggggaaaagttgttaataagtaataacat
gi|2 : CATTAGAAATAGAAATATTAAAAC--GCACAGTCAG-ACAGACAAATA-TA---T-TGTT-AAACTGAAAATTAGTCCTG---AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACA-AG-GTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCA--GTTTTGGGGCTA--T-GATTTGAAA--TCG-TACCCATAAGTAACGGTTCGAC-TTTT-GGAACAAC-TAGAGTGAC---GATTGTTTTTGTCGACCTAAGATTTCGGACAG-CTTATATACTT-CTAGTAA-CGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTGACGTAAGTATTTTATATTTTGT------CCTATACTACACAGCAACCAAATGTT--TCTTAGTCTTTGGTGTTA--ATGGTCGTAACGAGGG--TTTGCATACGA-GACGT-CG-CAGTGTTCTGAACA-GTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAAA-GAG-ATT-CAATAATCT-AACCT-TGATGTAACTCGGG-TGTTCACAAGAAATTTAG-TTGCATCTGTTG--TAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATA--AAAAGATCTGCTGACAGAATTCACTTGTTGTTCAATATCCAT--CTGGAGTCAA--GACAGACACCAAGA----TTCGAACACAGGTTGAAGGA-TTAATTTTTGAATCA-CCACTGTCCCTGAAATG-TTCTCATTAGATTTGCATTACGA--CGG---ACAAATATAATGACCTC-GTC-TATC-G---TGAGTTTCAACATATTGCCATGCATCCAAGACAC-ATGTCGT
gi|20 : CATGTTTTGGAAGGGCATTCCACAGATTTGGGACTA--TTGATCTGAAA
gi|21 : TAATCA-TACCA-TA-T--TTGTATAG--CACTCTTTACA-TA-CAACAT---GTACGCTCAAAGG-T-Ggtagccctaaaaagtaacttcaa
gi|23 : aataataaaAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AG
gi|24 : aaggcattggtgttccATTCCACAGTTTTGGGGCTA--TTGATCTGAAAAATCGA
gi|25 : TAATAA-TGCCA-TA-T--TTGTAT--AGCACCCT
gi|26 : aataataaaCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|3 : TAATAA-TACCA-TA-T--TT-TATAG--CACC-TTTTCA-TA-CAACAT---GTACGCTCAAAGG-T-GCTTTACA------ATG-CATA-TA-TAATAATAG------A------------------TATA----TAGATAT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-ATT--AAGAT--CGATGACAA-G----------TTTTTT-----------TTCTTTTCTGAAAAA------CCTG-AAAAACAA-GAT-ACAA--T-A-AATACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGT--TTTAAA--GCATATT-AAATG-GTAATGGG-GTAC-ACGCACGCACACA-CAGTACTCGATTATA-ATACATTAAAACATATAAAACAAAAACATAA--AAAAAAT-GTACCATTAAGAATAGAAATATTAAAA--CGCACAGTCAG-ACAGACAAA-ATTAATCT-TGTTAAAACTGAAAATTAGTCCT-G--AAAAGC--TTGATGGAAAAAAATTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATG-TTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTTA-TTGAAACATCGATCCCCATAAGTAACGGTTCGACTTTTTTGGAACAACATAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACGT-TTAGTAATCGCTTGATATA
gi|4 : aataatacataaAC-CATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG------TTTTTTTTTGGTTTTTTTGGTTTTTTTT--------------CTG-AAAAACAA-GAT-ACAA--T-A-AATACGCTAAA-TTAAAGCA-TAAGAAT-AA-CATCAGT--TTTAAA--TCTTATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACA-CAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AATAAAAAAATTGTACCATTAGTGATAGAAATATTAAAAC--ACACAGTCAG--CAGAAAAA-AATAATCT-TTTT-AAACTGAAAATTAGTCCTG---AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTAAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGTTTG
gi|5 : GTAGACAACGCTCAATGCGATGT-AATGTTCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAA--ATGATAGATAA-TT--GAGTCATCAGCGTAAAAATGGTGATCAAG--CCATGATATCTACAGATG-GA-ACCAACT-GTTTTGTATACA-TTGTATATGAATTTGGGGCCCAGACATGAC--CCTTGCGG--TACACCG-AATTCATTACCAA-GGACCTAGACTTG
gi|5 : AGA-AGATAATCCAGTCTAGT----GATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAATAG-GGTAG-TGTGGTCAATAGTTCTCAAATGCAGCGG-AAAGATCTAGCATCAC-------AAGTACAG--TGACATCATTTTGGTCTAAAGATTGAGcagaagataatccagtctagtgatttgcctgttattcaacagatggtgaagtcggtgcaatagggtagtgtggtcaatagttctcaaatgcagcggaaagatctagcatcacaagtacagtgacatcattttggtctaaagattgag
gi|6 : gtagacaacgctcaatgcgatgtaatgttctctgcctgcgaagctttgtccataggtttaaatgatagataattgagtcatcagcgtaaaaatggtgatcaagccatgatatctacagatggaaccaactgttttgtatacattgtatatgaatttggggcccagacatgacccttgcggtacaccgaattcattaccaaggacctagacttgcTAATAA-TAC-A-TA-T--TTGTATAG--CACCC-TTTCA-TA-CAACAT---GTACGC-CAAAGG-T-GCTTTACA------ATG-CATA-TA-TAATAATAG---------------------ATAATAGA--TATGGAT----------ATAC-CAT-AAA-TCA-CCAAAATAA--AAA--TAT-T---CT-ATT--AAGAT--CGATGACAA-GGGTTTTGTTTTTTTTTG-------TTGTTTTTTTTTT-----------TCTG-AAAAAACAAGAT-ACAA--T-ATA-TACGCTAAATTTAAAATATTAAGAAT-AAACAT---CAGTTT--AAAGCATATTGAAATGTATAAT-----------GTACGCACAC-ACAGTACTCGATTATGTATACATTAAAAC-TATAAA
gi|7 : aatagTAAGAA-AGCCA-TA-T--TTGTA---AGCGACCTTTTCA-TA-CAACAT---GTACGCTCAAAG--T-GCTGTACA------A-G-CA-A-TA-TAATA----------------TA--A---TA----ATA--A---GATAT-A---ATAATAC-CAATAAA-TCA-CAATAGT-A--AAAA-CAT----ACT-ATA--AA-----CGATGACAA-AG-----GTTTT--------------GGA--------AAAA--------ACTG-AAAAACAA-GAT-ACAAATT-A-A-TACGCTAT--TTAAAACA----AAATCAAACATCAG---TTCAAA--GCATATTGAAATG-GTAATGGA-GTAC-ACACCAGCACACA
gi|8 : tataataaaaataaaaATACTT-CTAGTAATCGCTTGATATAAA-CTGAACACTCATCATGTAAAGCT----AAGTATCTTA--TATTTTGTCCTATACAGGCAACCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATA-TGGTCGTAACGAGGGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAACGAGCATTACAATAATCT-AACCT-TGATGTAACT
gi|9 : TAATAA-TACCAATACT--TTGTATAA--CACCCTTTTCA-TAACAACAT---GTACGCTCAAGGG-T-GCTTTACA------ATG-CAT--TA-TAATAATAG-------------A--A---TATAA----------------A---GTAATAC-CATAAAA-TCA-CGAAAAT-ACCAAACCCATGT--ACTCATT--AAGACTGCGATGAAAA-GG----------CTTTTC-------TGG--------AAAAA--------CCTGAAAAAACAAAGATCACAA--TAA-A-TA-GAAATA-TTAAAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTTGTTTTGGTGTTTTTTTTTGGGGGGGGGGGGTCCAGAACAACAAAGGTGTAATAA
Alignments
lowQualScore : 222 99999999999999999999999999999999999 11 111111 444444444444444444444444444444444 1 11 1111 1 111111 11 111 111 11 11 11 11 11 222 11 11111 1 1 111 1 1 111 1 333333 666666666666666666 22 1 111 1 1 1 1 1 1 1 1 1 11 2222 1 111 1 2222 22 333 1 33 1 11 22222 11 1 1 1 1 1 1 222 11 11 1 11 11 11 1 22 1 1 1 1 1 1 1 3333333 11 11
lowQualScore : 3 3 3 55 222 3 3 555 9999 3 44 999999 7777 3 7 3 55 2 22222222222222222222222222222222222 999999999 4 8 4 4 7777 22 3 55 4 55 55 4 777777 0 888888888888888888888888888888888 5 1 7 6 99 6 6 3 00 4444 8 0 444444 8 8 0 8 66 444 3 777 33 22 3 88 88 8 66 0 8 66 444 11 3 2 66666 8 2 3 0 99 5 0 2 0 3 0 666 0 3 0 2 3 8 0 3 3 7 7 333 1 2 1 888888 888888888888888888 00 3 888 3 0 6 3 6 6 6 6 3 3 3 7 3 3 5 5 88 0000 5 7 111 0 2 4444 7 0 7 7 6 6 7 7 00 999 7 3 7 7 33 3 3 1 1 5 88 1 22222 77 5 5 5 5 5 5 000 1 88 88 5 66 88 1 99 3 7 00 6 7 3 3 5 5 5 5 1 5 2222222 88 1 1 88
lowQualScore : . . . .. ... . . ... .... . .. ...... .... . . . .. . ................................... ......... . . . . .... .. . .. . .. .. . ...... . ................................. . . . . .. . . . .. .... . . ...... . . . . .. ... . ... .. .. . .. .. . .. . . .. ... .. . . ..... . . . . .. . . . . . . ... . . . . . . . . . . . ... . . . ...... .................. .. . ... . . . . . . . . . . . . . . . . .. .... . . ... . . .... . . . . . . . . .. ... . . . . .. . . . . . .. . ..... .. . . . . . . ... . .. .. . .. .. . .. . . .. . . . . . . . . . . ....... .. . . ..
lowQualScore : 6 6 6 00 666 1 1 444 6666 1 66 666666 7777 6 3 6 00 1 55555555555555555555555555555555555 444444444 0 3 0 0 7777 33 6 00 0 55 55 0 555555 7 444444444444444444444444444444444 7 4 3 7 22 7 7 3 22 8888 0 6 000000 0 0 6 0 33 555 2 555 88 55 2 00 88 0 88 8 0 88 222 00 2 5 77777 0 5 2 8 22 0 8 5 0 2 0 222 0 2 2 5 2 0 8 2 3 3 3 000 0 0 0 333333 777777777777777777 00 3 333 3 7 7 3 7 7 7 7 3 3 3 3 3 3 5 5 55 0000 0 3 777 7 0 7777 3 7 3 3 7 7 3 3 00 000 3 3 3 3 33 2 2 0 0 0 55 0 00000 55 5 0 0 5 5 5 555 0 00 00 5 55 00 0 33 3 3 77 7 3 3 3 5 5 5 5 0 5 0000000 00 0 0 55
consensus : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA-TA-TA--ATAATAG-----------ATA--ATATA-AT-T-----ATAGAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTGAAA--------CCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAAAAGCATATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-TAATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGA-GGGTCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
Reference ( family-4587 ) : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA-TA-TA--ATAATAG-----------ATA--ATATA-ATATA----ATAGAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTGAAA--------CCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAAAAGCATATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-TAATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGA-GGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
gi|1 : TAATAA-TACCA-TA-TATCTGTATATACCATCCTTTTCACTA-CAACAT---GTACGCTCAAAGG----T-GCT--TTATATAAAAAAT----GGCGAAGTAGTA--ACAACAGTATGAAACGTTATATTATATA-ATATATAA-ATAGAT--AT-ATAAATA-TAG-CATAAAA-TCC-CCAAAGT-A--AAA--TAT-T--ACT-ATT--AAGAT--CT-TGACCA-GG-----GTTTTTTTTTGG------TGGCTTTTTTTTGGGGGGGAGGGGTCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAA--------------GAAT-AA-CAT---TTTTAAAAAGCATATTGAAATG-GTGATGGGAGTCCCACGCACG-ACACAACAGTACTCAATTATT--TACATTAAAACATATAATACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATTTTAAAAC-CGCACAGTCAG-ACAGACAAA-A---ATCTCTGT--AAGCTGAAAAATACTCCCGG--AAAAGTCTTTGATGGAAAA--TGTGTTTTC-----AGTGATTTCTTGAATAACACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGACATTCACCAGTTTTGGGGCTGATTTGATTTGAAACATCGATCCCCATAAGTAACGGTTC-----TTTTGGAACAAC-TAGAGTGACACCGACTGTTTT-GTCGACCTAAGATT-CGGCGAGGCT-ATATACCTACTAGATATCG-TTGATATAAATCTGGACACTCATCATGTAA-GCTTTGTAAGTAACGTAAG-ATCTTTTA-TATTT------CCAAT--------GTA-------GTTTCTCTTAGTCTT-GGTGTTATAGTGGTCGTAACAA-GGGTCCTGCATACGATGACGTGCGGCAGTGTTTTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAA-ACCCACC-AAA-AGA-ATTACAATAATCTGAACCTATGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCTCAAGATTTGCTGACAGAATTCACTC-TTGTTCGATATCCATTCTTGGAGTCAAGCGATGAACACCAAGATTACTTTGAACACAGGTTGA-GGATTTATTTTTTGATTCACCCACTGTCACTGAAATGTTTCTAACTAGATTTGCA-TACGATCCAGAATGCAAATAT--TGATCTC-GTCTTATCTGAGTTGAGTTTCAAC-TATTGCCATGCATCCAAGACACAATGTCGTGTAGACAACGCTAAATGCGATGTCAATGTCTTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGTTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAAGCCCATGATATCTATAGATGAGACACCAACTGGTTTTGTGTACATTTGTATA-GAA-TTGGGACC---ATCTGACCACCTTGCAGGTTACACCGAAATTCATTACCACTGG--CTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGTTCACTGAGGTAAGATAGATA-TCCAGTCT--TA-GTGATTT-----TT-TC-TA-ACAGATGGTGAAGTCGGTGC-ACAGAGGTAGTTGTGGTCAATAG-TGTCAAATGCAGCGGAAAAGATTCAGCATCACCAAGTCAAAGTACAGACTGACTTCATTTTTGTCTAAAA--TGAG
gi|10 : TATCCATTCTTGGAGTCAAGC-ATG-ACACCAAGATT--T-CGAACACAGTTCGAAGGATTAATTTTTT-AATCACCCACTGTCACTGAAATATTTCTAATTAGACTTGCATTACGA-CCGGC-TGCAAATACAATGACCTCGGTCTTAGCTGTGTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|11 : AA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAGC----T-G-T--TTACA------AT----G-CATA-TA--A--AT-ATAG-----------AT------------------ATAGAT--ATAA---ATAATAC-CAT--AA-CCA-CCAAAAT----AAA--CAT-T--ACT-A-T--GAGAT--CGATGACAAGGG-----GTTTTTTTTTG-------T--TTTTTTGTTG
gi|12 : TAATAAATACCA-TA-T--T-GTATTCAGCACCCTTT-CA-TA-CAACATTGTGTACGCTCAGAGG----TTGCT--TTACA------AT----G-CATAATA-TA--ATAATAG-----------ATA--ATATA-----------T---T--AC-A---ATAATACACATAAAAGTCA-CCAAAAT-A--AAA--CAT-TTCATT-ATTTTAAGAT--CGATGACAA-GG-----GTTTTttgttttttgttttttttttttttatga
gi|13 : ataatagataagtaaattaaTAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAAG----T-GCT--TTACA------AT----G-CATA-TA-TA--ATAATAG-----------ATA--A---------------TAGAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTT-------TGGTTTTTTTTT
gi|14 : taaaAAAACCTGAA---AA--AACAAA--G-ATCACAATAAATAGAAATATTAAAACGCCCACAGTCAGGACAGACAAA-A-TAATCT-TGTTCAAACTGAAAATTAGTCCTGATTAAATCC--CTGAT-------AT-TCTTTTCTTGGAAGTGACTTCCTttt
gi|15 : TAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGAGACCT-GTTAATTAAA------GTAACAG-CATA--A-GAGCACAATAT-----------GTAC-ACGTACATATAGAGTATAGAT--AT-
gi|16 : AGCACCCTTTTCA-TA-CAACAT---ATACGCTCAATGG----T-GCT--TTACA------AT----G-CGTA-TA-TA--ATAATA------------ACA--CTTTA-CTATT----A-AGATCGAT-G---ACAAgtac
gi|16 : AAT-A--ACA--CTT-T--ACT-ATT--AAGAT--CGATGACAA-GG--------------T--------TGGTTTTTTTCTGAAAAA------CCTG-AAAAACAggttggtttttttctgaaaaacctgaaaaaca
gi|17 : agcacccttttcatacaacatatacgctcaatggtgctttacaatgcgtatataatTATAGCACCCTTTTCA-TA-CA---T---TTACACTCA--GGC---T-GAT--TTACA------AT----G-C-TA-TA-TA---------------------TG--ATATG-ATATA-------GAT---T-A---ATAATAC-CAT-AAA-TCATCCAAAAT-A--AAA--CAT-T--AC
gi|18 : TATAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTATA------
gi|19 : GACCGTTTGTTGACGATCACTGAGGTAAGAC-GATA-TCCAGCCTAGTACGTGATTTGCCTGTTATTCCATACAGATtggggaaaagttgttaataagtaataacat
gi|2 : CATTAGAAATAGAAATATTAAAAC--GCACAGTCAG-ACAGACAAATA-TA---T-TGTT-AAACTGAAAATTAGTCCTG---AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACA-AG-GTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCA--GTTTTGGGGCTA--T-GATTTGAAA--TCG-TACCCATAAGTAACGGTTCGAC-TTTT-GGAACAAC-TAGAGTGAC---GATTGTTTTTGTCGACCTAAGATTTCGGACAG-CTTATATACTT-CTAGTAA-CGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTGACGTAAGTATTTTATATTTTGT------CCTATACTACACAGCAACCAAATGTT--TCTTAGTCTTTGGTGTTA--ATGGTCGTAACGA-GGGTT-TGCATACGA-GACGT-CG-CAGTGTTCTGAACA-GTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAAA-GAG-ATT-CAATAATCT-AACCT-TGATGTAACTCGGG-TGTTCACAAGAAATTTAG-TTGCATCTGTTG--TAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATA--AAAAGATCTGCTGACAGAATTCACTTGTTGTTCAATATCCAT--CTGGAGTCAA--GACAGACACCAAGA----TTCGAACACAGGTTGAAGGA-TTAATTTTTGAATCA-CCACTGTCCCTGAAATG-TTCTCATTAGATTTGCATTACGA--CGG---ACAAATATAATGACCTC-GTC-TATC-G---TGAGTTTCAACATATTGCCATGCATCCAAGACAC-ATGTCGT
gi|20 : CATGTTTTGGAAGGGCATTCCACAGATTTGGGACTA--TTGATCTGAAA
gi|21 : TAATCA-TACCA-TA-T--TTGTATAG--CACTCTTTACA-TA-CAACAT---GTACGCTCAAAGG----T-Ggtagccctaaaaagtaacttcaa
gi|23 : aataataaaAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AG
gi|24 : aaggcattggtgttccATTCCACAGTTTTGGGGCTA--TTGATCTGAAAAATCGA
gi|25 : TAATAA-TGCCA-TA-T--TTGTAT--AGCACCCT
gi|26 : aataataaaCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|3 : TAATAA-TACCA-TA-T--TT-TATAG--CACC-TTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA-TA-TA--ATAATAG-----------ATA-----------TA-----TAGAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-ATT--AAGAT--CGATGACAA-G----------TTTTTT-----------TTCTTTTCTGAAAAA------CCTG-AAAAACAA-GAT-ACAA--T-A-AATACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAA--GCATATT-AAATG-GTAATGGG-GTAC-ACGCACGCACACA-CAGTACTCGATTATA-ATACATTAAAACATATAAAACAAAAACATAA--AAAAAAT-GTACCATTAAGAATAGAAATATTAAAA--CGCACAGTCAG-ACAGACAAA-ATTAATCT-TGTTAAAACTGAAAATTAGTCCT-G--AAAAGC--TTGATGGAAAAAAATTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATG-TTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTTA-TTGAAACATCGATCCCCATAAGTAACGGTTCGACTTTTTTGGAACAACATAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACGT-TTAGTAATCGCTTGATATA
gi|4 : aataatacataaAC-CATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG------TTTTTTTTTGGTTTTTTTGGTTTTTTTT--------------CTG-AAAAACAA-GAT-ACAA--T-A-AATACGCTAAA-TTAAAGCA-TAAGAAT-AA-CATCAGTTTTAAA--TCTTATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACA-CAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AATAAAAAAATTGTACCATTAGTGATAGAAATATTAAAAC--ACACAGTCAG--CAGAAAAA-AATAATCT-TTTT-AAACTGAAAATTAGTCCTG---AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTAAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGTTTG
gi|5 : GTAGACAACGCTCAATGCGATGT-AATGTTCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAA--ATGATAGATAA-TT--GAGTCATCAGCGTAAAAATGGTGATCAAG--CCATGATATCTACAGATG-GA-ACCAACT-GTTTTGTATACA-TTGTATATGAATTTGGGGCCCAGACATGAC--CCTTGCGG--TACACCG-AATTCATTACCAA-GGACCTAGACTTG
gi|5 : AGA-AGATAATCCAGTCTAGT----GATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAATAG-GGTAG-TGTGGTCAATAGTTCTCAAATGCAGCGG-AAAGATCTAGCATCAC-------AAGTACAG--TGACATCATTTTGGTCTAAAGATTGAGcagaagataatccagtctagtgatttgcctgttattcaacagatggtgaagtcggtgcaatagggtagtgtggtcaatagttctcaaatgcagcggaaagatctagcatcacaagtacagtgacatcattttggtctaaagattgag
gi|6 : gtagacaacgctcaatgcgatgtaatgttctctgcctgcgaagctttgtccataggtttaaatgatagataattgagtcatcagcgtaaaaatggtgatcaagccatgatatctacagatggaaccaactgttttgtatacattgtatatgaatttggggcccagacatgacccttgcggtacaccgaattcattaccaaggacctagacttgcTAATAA-TAC-A-TA-T--TTGTATAG--CACCC-TTTCA-TA-CAACAT---GTACGC-CAAAGG----T-GCT--TTACA------AT----G-CATA-TA-TA--ATAATAG-----------ATA--ATA-G-AT-------ATGGAT------------ATAC-CAT-AAA-TCA-CCAAAATAA--AAA--TAT-T---CT-ATT--AAGAT--CGATGACAA-GGGTTTTGTTTTTTTTTG-------TTGTTTTTTTTTT-----------TCTG-AAAAAACAAGAT-ACAA--T-ATA-TACGCTAAATTTAAAATATTAAGAAT-AAACATCAGTTT---AAAGCATATTGAAATGTATAAT-----------GTACGCACAC-ACAGTACTCGATTATGTATACATTAAAAC-TATAAA
gi|7 : aatagTAAGAA-AGCCA-TA-T--TTGTA---AGCGACCTTTTCA-TA-CAACAT---GTACGCTCAAA-G----T-GCT--GTACA------A-----G-CA-A-TA-TA--AT-ATA------------ATA--ATA--------------AGAT--AT-A---ATAATAC-CAATAAA-TCA-CAATAGTAA--AAA--CA--T--ACT-ATA--AA-----CGATGACAA-AG-----GTTT--------------TGG--------AAAAA--------ACTG-AAAAAC-AAGAT-ACAAATT-A-A-TACGCT-AT-TTAAAAC----AAAATCAAACATCAGTTC---AAAGCATATTGAAATG-GTAATGGA-GTAC-ACACCAGCACACA
gi|8 : tataataaaaataaaaATACTT-CTAGTAATCGCTTGATATAAA-CTGAACACTCATCATGTAAAGC----TAAGTATCTTA--TATTTTGTCCTATACAGGCAACCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATA-TGGTCGTAACGAGGGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAACGAGCATTACAATAATCT-AACCT-TGATGTAACT
gi|9 : TAATAA-TACCAATACT--TTGTATAA--CACCCTTTTCA-TAACAACAT---GTACGCTCAAGGG----T-GCT--TTACA------AT----G-CAT--TA-TA--ATAATAG-------------A--ATATA-A-------------------A---GTAATAC-CATAAAA-TCA-CGAAAAT-ACCAAACCCATGT--ACTCATT--AAGACTGCGATGAAAA-GG----------CTTTTC-------TGG--------AAAAA--------CCTGAAAAAACAAAGATCACAA--TAA-A-TA-GAAATA-TTAAAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTTGTTTTGGTGTTTTTTTTTGGGGGGGGGGGGTCCAGAACAACAAAGGTGTAATAA
Alignments
lowQualScore : 222 1111 6666666666666666666666666666666 11 111111 444444444444444444444444444444444 1 11 1111 1 111111 11 111 111 11 11 11 11 11 222 11 11111 1 1 111 1 1 111 1 333333 666666666666666666 22 1 111 1 1 1 1 1 1 1 1 1 11 2222 1 111 1 2222 22 333 1 33 1 11 22222 11 1 1 1 1 1 1 222 11 11 1 11 11 11 1 22 1 1 1 1 1 1 1 3333333 11 11
lowQualScore : 3 3 3 55 222 0 3 3 555 9999 3 44 999999 7777 3 5555 3 8888 1111111111111111111111111111111 77777 3 4 777 4 3 4 4 7777 22 3 55 4 55 55 4 777777 0 888888888888888888888888888888888 5 1 7 6 99 6 6 3 00 4444 8 0 444444 8 8 0 8 66 444 3 777 33 22 3 88 88 8 66 0 8 66 444 11 3 2 66666 8 2 3 0 99 5 0 2 0 3 0 666 0 3 0 2 3 8 0 3 3 7 7 333 1 2 1 888888 888888888888888888 00 3 888 3 6 3 6 6 6 6 3 3 3 7 3 3 5 5 88 0000 5 7 111 0 2 4444 7 0 7 7 6 6 7 7 00 999 7 3 7 7 33 3 3 1 1 5 88 1 22222 77 5 5 5 5 5 5 000 1 88 88 5 66 88 1 99 3 7 00 6 7 3 3 5 5 5 5 1 5 2222222 88 1 1 88
lowQualScore : . . . .. ... . . . ... .... . .. ...... .... . .... . .... ............................... ..... . . ... . . . . .... .. . .. . .. .. . ...... . ................................. . . . . .. . . . .. .... . . ...... . . . . .. ... . ... .. .. . .. .. . .. . . .. ... .. . . ..... . . . . .. . . . . . . ... . . . . . . . . . . . ... . . . ...... .................. .. . ... . . . . . . . . . . . . . . . .. .... . . ... . . .... . . . . . . . . .. ... . . . . .. . . . . . .. . ..... .. . . . . . . ... . .. .. . .. .. . .. . . .. . . . . . . . . . . ....... .. . . ..
lowQualScore : 6 6 6 00 666 5 1 1 444 6666 1 66 666666 7777 6 0000 6 5555 3333333333333333333333333333333 66666 6 0 000 0 4 0 0 7777 33 6 00 0 55 55 0 555555 7 444444444444444444444444444444444 7 4 3 7 22 7 7 3 22 8888 0 6 000000 0 0 6 0 33 555 2 555 88 55 2 00 88 0 88 8 0 88 222 00 2 5 77777 0 5 2 8 22 0 8 5 0 2 0 222 0 2 2 5 2 0 8 2 3 3 3 000 0 0 0 333333 777777777777777777 00 3 333 3 7 3 7 7 7 7 3 3 3 3 3 3 5 5 55 0000 0 3 777 7 0 7777 3 7 3 3 7 7 3 3 00 000 3 3 3 3 33 2 2 0 0 0 55 0 00000 55 5 0 0 5 5 5 555 0 00 00 5 55 00 0 33 3 3 77 7 3 3 3 5 5 5 5 0 5 0000000 00 0 0 55
consensus : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATATA--A--TATAGAT--A--T-A-ATAA---TAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTGAAA--------CCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAAAAGCATATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-TAATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGA-GGGTCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
Reference ( family-4587 ) : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATATA--AT-TATAGAT--A--T-A-ATAA---TAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTGAAA--------CCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAAAAGCATATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-TAATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGA-GGGTCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
gi|1 : TAATAA-TACCA-TA-TATCTGTATATACCATCCTTTTCACTA-CAACAT---GTACGCTCAAAGG----T-GCT--TTATATAAAAAAT----GGCGAAG---TAGTAACA---ACAGTATGAAACGTTATATTATATA--ATATATAAAT--AGAT-ATATAAATATAG-CATAAAA-TCC-CCAAAGT-A--AAA--TAT-T--ACT-ATT--AAGAT--CT-TGACCA-GG-----GTTTTTTTTTGG------TGGCTTTTTTTTGGGGGGGAGGGGTCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAA--------------GAAT-AA-CAT---TTTTAAAAAGCATATTGAAATG-GTGATGGGAGTCCCACGCACG-ACACAACAGTACTCAATTATT--TACATTAAAACATATAATACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATTTTAAAAC-CGCACAGTCAG-ACAGACAAA-A---ATCTCTGT--AAGCTGAAAAATACTCCCGG--AAAAGTCTTTGATGGAAAA--TGTGTTTTC-----AGTGATTTCTTGAATAACACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGACATTCACCAGTTTTGGGGCTGATTTGATTTGAAACATCGATCCCCATAAGTAACGGTTC-----TTTTGGAACAAC-TAGAGTGACACCGACTGTTTT-GTCGACCTAAGATT-CGGCGAGGCT-ATATACCTACTAGATATCG-TTGATATAAATCTGGACACTCATCATGTAA-GCTTTGTAAGTAACGTAAG-ATCTTTTA-TATTT------CCAAT--------GTA-------GTTTCTCTTAGTCTT-GGTGTTATAGTGGTCGTAACAA-GGGTCCTGCATACGATGACGTGCGGCAGTGTTTTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAA-ACCCACC-AAA-AGA-ATTACAATAATCTGAACCTATGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCTCAAGATTTGCTGACAGAATTCACTC-TTGTTCGATATCCATTCTTGGAGTCAAGCGATGAACACCAAGATTACTTTGAACACAGGTTGA-GGATTTATTTTTTGATTCACCCACTGTCACTGAAATGTTTCTAACTAGATTTGCA-TACGATCCAGAATGCAAATAT--TGATCTC-GTCTTATCTGAGTTGAGTTTCAAC-TATTGCCATGCATCCAAGACACAATGTCGTGTAGACAACGCTAAATGCGATGTCAATGTCTTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGTTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAAGCCCATGATATCTATAGATGAGACACCAACTGGTTTTGTGTACATTTGTATA-GAA-TTGGGACC---ATCTGACCACCTTGCAGGTTACACCGAAATTCATTACCACTGG--CTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGTTCACTGAGGTAAGATAGATA-TCCAGTCT--TA-GTGATTT-----TT-TC-TA-ACAGATGGTGAAGTCGGTGC-ACAGAGGTAGTTGTGGTCAATAG-TGTCAAATGCAGCGGAAAAGATTCAGCATCACCAAGTCAAAGTACAGACTGACTTCATTTTTGTCTAAAA--TGAG
gi|10 : TATCCATTCTTGGAGTCAAGC-ATG-ACACCAAGATT--T-CGAACACAGTTCGAAGGATTAATTTTTT-AATCACCCACTGTCACTGAAATATTTCTAATTAGACTTGCATTACGA-CCGGC-TGCAAATACAATGACCTCGGTCTTAGCTGTGTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|11 : AA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAGC----T-G-T--TTACA------AT----G-CATA----TA--AAT----ATAG-----------A--------------TATAGAT--A--TAA-ATAA---TAC-CAT--AA-CCA-CCAAAAT----AAA--CAT-T--ACT-A-T--GAGAT--CGATGACAAGGG-----GTTTTTTTTTG-------T--TTTTTTGTTG
gi|12 : TAATAAATACCA-TA-T--T-GTATTCAGCACCCTTT-CA-TA-CAACATTGTGTACGCTCAGAGG----TTGCT--TTACA------AT----G-CATAA---TA-TAATA---ATAG-----------ATA--ATATA-------T---T--A--C-A-ATAA---TACACATAAAAGTCA-CCAAAAT-A--AAA--CAT-TTCATT-ATTTTAAGAT--CGATGACAA-GG-----GTTTTttgttttttgttttttttttttttatga
gi|13 : ataatagataagtaaattaaTAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAAG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATA-----------GAT--A--T-A-ATAA---TAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTT-------TGGTTTTTTTTT
gi|14 : taaaAAAACCTGAA---AA--AACAAA--G-ATCACAATAAATAGAAATATTAAAACGCCCACAGTCAGGACAGACAAA-A-TAATCT-TGTTCAAACTGAAAATTAGTCCTGATTAAATCC--CTGAT-------AT-TCTTTTCTTGGAAGTGACTTCCTttt
gi|15 : TAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGAGACCT-GTTAATTAAA------GTAACAG-CATAAGAGCA-CAATATGTACAC-----------GTAC-ATATAG-AG-TATAGAT--A--T-
gi|16 : AGCACCCTTTTCA-TA-CAACAT---ATACGCTCAATGG----T-GCT--TTACA------AT----G-CGTA----TA-TAATA---ATA------------ACA--CTTTACTAT-TA-AGATCGA--T-G-ACAA---gtac
gi|16 : AAT-A--ACA--CTT-T--ACT-ATT--AAGAT--CGATGACAA-GG--------------T--------TGGTTTTTTTCTGAAAAA------CCTG-AAAAACAggttggtttttttctgaaaaacctgaaaaaca
gi|17 : agcacccttttcatacaacatatacgctcaatggtgctttacaatgcgtatataatTATAGCACCCTTTTCA-TA-CA---T---TTACACTCA--GGC---T-GAT--TTACA------AT----G-C-TA----TA-TA----------------------TG--ATATG--AT--ATAGAT-----T-A-ATAA---TAC-CAT-AAA-TCATCCAAAAT-A--AAA--CAT-T--AC
gi|18 : TATAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTATA------
gi|19 : GACCGTTTGTTGACGATCACTGAGGTAAGAC-GATA-TCCAGCCTAGTACGTGATTTGCCTGTTATTCCATACAGATtggggaaaagttgttaataagtaataacat
gi|2 : CATTAGAAATAGAAATATTAAAAC--GCACAGTCAG-ACAGACAAATA-TA---T-TGTT-AAACTGAAAATTAGTCCTG---AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACA-AG-GTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCA--GTTTTGGGGCTA--T-GATTTGAAA--TCG-TACCCATAAGTAACGGTTCGAC-TTTT-GGAACAAC-TAGAGTGAC---GATTGTTTTTGTCGACCTAAGATTTCGGACAG-CTTATATACTT-CTAGTAA-CGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTGACGTAAGTATTTTATATTTTGT------CCTATACTACACAGCAACCAAATGTT--TCTTAGTCTTTGGTGTTA--ATGGTCGTAACGA-GGGTT-TGCATACGA-GACGT-CG-CAGTGTTCTGAACA-GTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAAA-GAG-ATT-CAATAATCT-AACCT-TGATGTAACTCGGG-TGTTCACAAGAAATTTAG-TTGCATCTGTTG--TAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATA--AAAAGATCTGCTGACAGAATTCACTTGTTGTTCAATATCCAT--CTGGAGTCAA--GACAGACACCAAGA----TTCGAACACAGGTTGAAGGA-TTAATTTTTGAATCA-CCACTGTCCCTGAAATG-TTCTCATTAGATTTGCATTACGA--CGG---ACAAATATAATGACCTC-GTC-TATC-G---TGAGTTTCAACATATTGCCATGCATCCAAGACAC-ATGTCGT
gi|20 : CATGTTTTGGAAGGGCATTCCACAGATTTGGGACTA--TTGATCTGAAA
gi|21 : TAATCA-TACCA-TA-T--TTGTATAG--CACTCTTTACA-TA-CAACAT---GTACGCTCAAAGG----T-Ggtagccctaaaaagtaacttcaa
gi|23 : aataataaaAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AG
gi|24 : aaggcattggtgttccATTCCACAGTTTTGGGGCTA--TTGATCTGAAAAATCGA
gi|25 : TAATAA-TGCCA-TA-T--TTGTAT--AGCACCCT
gi|26 : aataataaaCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|3 : TAATAA-TACCA-TA-T--TT-TATAG--CACC-TTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA------------TATAGAT--A--T-A-ATAA---TAC-CATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-ATT--AAGAT--CGATGACAA-G----------TTTTTT-----------TTCTTTTCTGAAAAA------CCTG-AAAAACAA-GAT-ACAA--T-A-AATACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAA--GCATATT-AAATG-GTAATGGG-GTAC-ACGCACGCACACA-CAGTACTCGATTATA-ATACATTAAAACATATAAAACAAAAACATAA--AAAAAAT-GTACCATTAAGAATAGAAATATTAAAA--CGCACAGTCAG-ACAGACAAA-ATTAATCT-TGTTAAAACTGAAAATTAGTCCT-G--AAAAGC--TTGATGGAAAAAAATTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATG-TTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTTA-TTGAAACATCGATCCCCATAAGTAACGGTTCGACTTTTTTGGAACAACATAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACGT-TTAGTAATCGCTTGATATA
gi|4 : aataatacataaAC-CATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG------TTTTTTTTTGGTTTTTTTGGTTTTTTTT--------------CTG-AAAAACAA-GAT-ACAA--T-A-AATACGCTAAA-TTAAAGCA-TAAGAAT-AA-CATCAGTTTTAAA--TCTTATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACA-CAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AATAAAAAAATTGTACCATTAGTGATAGAAATATTAAAAC--ACACAGTCAG--CAGAAAAA-AATAATCT-TTTT-AAACTGAAAATTAGTCCTG---AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTAAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGTTTG
gi|5 : GTAGACAACGCTCAATGCGATGT-AATGTTCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAA--ATGATAGATAA-TT--GAGTCATCAGCGTAAAAATGGTGATCAAG--CCATGATATCTACAGATG-GA-ACCAACT-GTTTTGTATACA-TTGTATATGAATTTGGGGCCCAGACATGAC--CCTTGCGG--TACACCG-AATTCATTACCAA-GGACCTAGACTTG
gi|5 : AGA-AGATAATCCAGTCTAGT----GATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAATAG-GGTAG-TGTGGTCAATAGTTCTCAAATGCAGCGG-AAAGATCTAGCATCAC-------AAGTACAG--TGACATCATTTTGGTCTAAAGATTGAGcagaagataatccagtctagtgatttgcctgttattcaacagatggtgaagtcggtgcaatagggtagtgtggtcaatagttctcaaatgcagcggaaagatctagcatcacaagtacagtgacatcattttggtctaaagattgag
gi|6 : gtagacaacgctcaatgcgatgtaatgttctctgcctgcgaagctttgtccataggtttaaatgatagataattgagtcatcagcgtaaaaatggtgatcaagccatgatatctacagatggaaccaactgttttgtatacattgtatatgaatttggggcccagacatgacccttgcggtacaccgaattcattaccaaggacctagacttgcTAATAA-TAC-A-TA-T--TTGTATAG--CACCCTTT-CA-TA-CAACAT---GTACGC-CAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATAGA-----TATGGAT--A--T-A----------C-CATAAA--TCA-CCAAAATAA--AAA--TAT-T---CT-ATT--AAGAT--CGATGACAA-GGGTTTTGTTTTTTTTTG-------TTGTTTTTTTTTT-----------TCTG-AAAAAACAAGAT-ACAA--T-ATA-TACGCTAAATTTAAAATATTAAGAAT-AAACATCAGTTT---AAAGCATATTGAAATGTATAAT-----------GTACGCACAC-ACAGTACTCGATTATGTATACATTAAAAC-TATAAA
gi|7 : aatagTAAGAA-AGCCA-TA-T--TTGTA---AGCGACCTTTTCA-TA-CAACAT---GTACGCTCAAA-G----T-GCT--GTACA------A-----G-CA-A----TA-TAAT----ATA------------ATA--ATA----------AGAT--A--T-A-ATAA---TAC-CAATAAA-TCA-CAATAGTAA--AAA--CA--T--ACT-ATA--AA-----CGATGACAA-AG-----GTTT--------------TGG--------AAAAA--------ACTG-AAAAAC-AAGAT-ACAAATT-A-A-TACGCT-AT-TTAAAAC----AAAATCAAACATCAGTTC---AAAGCATATTGAAATG-GTAATGGA-GTAC-ACACCAGCACACA
gi|8 : tataataaaaataaaaATACTT-CTAGTAATCGCTTGATATAAA-CTGAACACTCATCATGTAAAGC----TAAGTATCTTA--TATTTTGTCCTATACAGGCAACCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATA-TGGTCGTAACGAGGGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAACGAGCATTACAATAATCT-AACCT-TGATGTAACT
gi|9 : TAATAA-TACCAATACT--TTGTATAA--CACCCTTTTCA-TAACAACAT---GTACGCTCAAGGG----T-GCT--TTACA------AT----G-CAT-----TA-TAATA---ATAG-------------A--ATATA--A----------------A-GTAA---TAC-CATAAAA-TCA-CGAAAAT-ACCAAACCCATGT--ACTCATT--AAGACTGCGATGAAAA-GG----------CTTTTC-------TGG--------AAAAA--------CCTGAAAAAACAAAGATCACAA--TAA-A-TA-GAAATA-TTAAAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTTGTTTTGGTGTTTTTTTTTGGGGGGGGGGGGTCCAGAACAACAAAGGTGTAATAA
Alignments
lowQualScore : 222 1111 44444444444444444444444444444444444444 11 111111 444444444444444444444444444444444 1 11 1111 1 111111 11 111 111 11 11 11 11 11 222 11 11111 1 1 111 1 1 111 1 333333 666666666666666666 22 1 111 1 1 1 1 1 1 1 1 1 11 2222 1 111 1 2222 22 333 1 33 1 11 22222 11 1 1 1 1 1 1 222 11 11 1 11 11 11 1 22 1 1 1 1 1 1 1 3333333 11 11
lowQualScore : 3 3 3 55 222 0 3 3 555 9999 3 44 999999 7777 3 5555 3 666 55555555555555555555555555555555555555 55 3 777 4 3 4 4 7777 22 3 55 4 55 55 4 777777 0 888888888888888888888888888888888 5 1 7 6 99 6 6 3 00 4444 8 0 444444 8 8 0 8 66 444 3 777 33 22 3 88 88 8 66 0 8 66 444 11 3 2 66666 8 2 3 0 99 5 0 2 0 3 0 666 0 3 0 2 3 8 0 3 3 7 7 333 1 2 1 888888 888888888888888888 00 3 888 3 6 3 6 6 6 6 3 3 3 7 3 3 5 5 88 0000 5 7 111 0 2 4444 7 0 7 7 6 6 7 7 00 999 7 3 7 7 33 3 3 1 1 5 88 1 22222 77 5 5 5 5 5 5 000 1 88 88 5 66 88 1 99 3 7 00 6 7 3 3 5 5 5 5 1 5 2222222 88 1 1 88
lowQualScore : . . . .. ... . . . ... .... . .. ...... .... . .... . ... ...................................... .. . ... . . . . .... .. . .. . .. .. . ...... . ................................. . . . . .. . . . .. .... . . ...... . . . . .. ... . ... .. .. . .. .. . .. . . .. ... .. . . ..... . . . . .. . . . . . . ... . . . . . . . . . . . ... . . . ...... .................. .. . ... . . . . . . . . . . . . . . . .. .... . . ... . . .... . . . . . . . . .. ... . . . . .. . . . . . .. . ..... .. . . . . . . ... . .. .. . .. .. . .. . . .. . . . . . . . . . . ....... .. . . ..
lowQualScore : 6 6 6 00 666 5 1 1 444 6666 1 66 666666 7777 6 0000 6 444 44444444444444444444444444444444444444 00 6 000 0 4 0 0 7777 33 6 00 0 55 55 0 555555 7 444444444444444444444444444444444 7 4 3 7 22 7 7 3 22 8888 0 6 000000 0 0 6 0 33 555 2 555 88 55 2 00 88 0 88 8 0 88 222 00 2 5 77777 0 5 2 8 22 0 8 5 0 2 0 222 0 2 2 5 2 0 8 2 3 3 3 000 0 0 0 333333 777777777777777777 00 3 333 3 7 3 7 7 7 7 3 3 3 3 3 3 5 5 55 0000 0 3 777 7 0 7777 3 7 3 3 7 7 3 3 00 000 3 3 3 3 33 2 2 0 0 0 55 0 00000 55 5 0 0 5 5 5 555 0 00 00 5 55 00 0 33 3 3 77 7 3 3 3 5 5 5 5 0 5 0000000 00 0 0 55
consensus : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATAT--A-ATAT--A------GAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTGAAA--------CCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAAAAGCATATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-TAATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGA-GGGTCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
Reference ( family-4587 ) : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATAT--A-ATAT--A------GAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTGAAA--------CCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAAAAGCATATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-TAATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGA-GGGTCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
gi|1 : TAATAA-TACCA-TA-TATCTGTATATACCATCCTTTTCACTA-CAACAT---GTACGCTCAAAGG----T-GCT--TTATATAAAAAAT----GGCGAAG---TAGTAACA---ACAGTATGAAACGTTATATTATAT--A-ATAT--ATAAATAGAT--AT-ATAAATA-TAG-CATAAAA-TCC-CCAAAGT-A--AAA--TAT-T--ACT-ATT--AAGAT--CT-TGACCA-GG-----GTTTTTTTTTGG------TGGCTTTTTTTTGGGGGGGAGGGGTCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAA--------------GAAT-AA-CAT---TTTTAAAAAGCATATTGAAATG-GTGATGGGAGTCCCACGCACG-ACACAACAGTACTCAATTATT--TACATTAAAACATATAATACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATTTTAAAAC-CGCACAGTCAG-ACAGACAAA-A---ATCTCTGT--AAGCTGAAAAATACTCCCGG--AAAAGTCTTTGATGGAAAA--TGTGTTTTC-----AGTGATTTCTTGAATAACACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGACATTCACCAGTTTTGGGGCTGATTTGATTTGAAACATCGATCCCCATAAGTAACGGTTC-----TTTTGGAACAAC-TAGAGTGACACCGACTGTTTT-GTCGACCTAAGATT-CGGCGAGGCT-ATATACCTACTAGATATCG-TTGATATAAATCTGGACACTCATCATGTAA-GCTTTGTAAGTAACGTAAG-ATCTTTTA-TATTT------CCAAT--------GTA-------GTTTCTCTTAGTCTT-GGTGTTATAGTGGTCGTAACAA-GGGTCCTGCATACGATGACGTGCGGCAGTGTTTTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAA-ACCCACC-AAA-AGA-ATTACAATAATCTGAACCTATGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCTCAAGATTTGCTGACAGAATTCACTC-TTGTTCGATATCCATTCTTGGAGTCAAGCGATGAACACCAAGATTACTTTGAACACAGGTTGA-GGATTTATTTTTTGATTCACCCACTGTCACTGAAATGTTTCTAACTAGATTTGCA-TACGATCCAGAATGCAAATAT--TGATCTC-GTCTTATCTGAGTTGAGTTTCAAC-TATTGCCATGCATCCAAGACACAATGTCGTGTAGACAACGCTAAATGCGATGTCAATGTCTTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGTTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAAGCCCATGATATCTATAGATGAGACACCAACTGGTTTTGTGTACATTTGTATA-GAA-TTGGGACC---ATCTGACCACCTTGCAGGTTACACCGAAATTCATTACCACTGG--CTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGTTCACTGAGGTAAGATAGATA-TCCAGTCT--TA-GTGATTT-----TT-TC-TA-ACAGATGGTGAAGTCGGTGC-ACAGAGGTAGTTGTGGTCAATAG-TGTCAAATGCAGCGGAAAAGATTCAGCATCACCAAGTCAAAGTACAGACTGACTTCATTTTTGTCTAAAA--TGAG
gi|10 : TATCCATTCTTGGAGTCAAGC-ATG-ACACCAAGATT--T-CGAACACAGTTCGAAGGATTAATTTTTT-AATCACCCACTGTCACTGAAATATTTCTAATTAGACTTGCATTACGA-CCGGC-TGCAAATACAATGACCTCGGTCTTAGCTGTGTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|11 : AA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAGC----T-G-T--TTACA------AT----G-CATA----TA--------------------------A--ATAT--AGATAT--A------GAT--ATAA---ATAATAC-CAT--AA-CCA-CCAAAAT----AAA--CAT-T--ACT-A-T--GAGAT--CGATGACAAGGG-----GTTTTTTTTTG-------T--TTTTTTGTTG
gi|12 : TAATAAATACCA-TA-T--T-GTATTCAGCACCCTTT-CA-TA-CAACATTGTGTACGCTCAGAGG----TTGCT--TTACA------AT----G-CATAA---TA-TAATA---ATAG-----------ATA--ATAT--A----T-----------T--AC-A---ATAATACACATAAAAGTCA-CCAAAAT-A--AAA--CAT-TTCATT-ATTTTAAGAT--CGATGACAA-GG-----GTTTTttgttttttgttttttttttttttatga
gi|13 : ataatagataagtaaattaaTAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAAG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATA------------------GAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTT-------TGGTTTTTTTTT
gi|14 : taaaAAAACCTGAA---AA--AACAAA--G-ATCACAATAAATAGAAATATTAAAACGCCCACAGTCAGGACAGACAAA-A-TAATCT-TGTTCAAACTGAAAATTAGTCCTGATTAAATCC--CTGAT-------AT-TCTTTTCTTGGAAGTGACTTCCTttt
gi|15 : TAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGAGACCT-GTTAATTAAA------GTAACAG-CATAAGAGCA-CAATATGTACAC-----------GTAC-ATATAGA-GTAT--A------GAT--AT-
gi|16 : AGCACCCTTTTCA-TA-CAACAT---ATACGCTCAATGG----T-GCT--TTACA------AT----G-CGTA----TA-TAATA---ATA------------ACA--CTTT--A-CTATTAA------GATCGAT-G---ACAAgtac
gi|16 : AAT-A--ACA--CTT-T--ACT-ATT--AAGAT--CGATGACAA-GG--------------T--------TGGTTTTTTTCTGAAAAA------CCTG-AAAAACAggttggtttttttctgaaaaacctgaaaaaca
gi|17 : agcacccttttcatacaacatatacgctcaatggtgctttacaatgcgtatataatTATAGCACCCTTTTCA-TA-CA---T---TTACACTCA--GGC---T-GAT--TTACA------AT----G-C-TA----TA-TA----------------------TG--ATAT--G-ATAT--A------GAT---T-A---ATAATAC-CAT-AAA-TCATCCAAAAT-A--AAA--CAT-T--AC
gi|18 : TATAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTATA------
gi|19 : GACCGTTTGTTGACGATCACTGAGGTAAGAC-GATA-TCCAGCCTAGTACGTGATTTGCCTGTTATTCCATACAGATtggggaaaagttgttaataagtaataacat
gi|2 : CATTAGAAATAGAAATATTAAAAC--GCACAGTCAG-ACAGACAAATA-TA---T-TGTT-AAACTGAAAATTAGTCCTG---AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACA-AG-GTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCA--GTTTTGGGGCTA--T-GATTTGAAA--TCG-TACCCATAAGTAACGGTTCGAC-TTTT-GGAACAAC-TAGAGTGAC---GATTGTTTTTGTCGACCTAAGATTTCGGACAG-CTTATATACTT-CTAGTAA-CGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTGACGTAAGTATTTTATATTTTGT------CCTATACTACACAGCAACCAAATGTT--TCTTAGTCTTTGGTGTTA--ATGGTCGTAACGA-GGGTT-TGCATACGA-GACGT-CG-CAGTGTTCTGAACA-GTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAAA-GAG-ATT-CAATAATCT-AACCT-TGATGTAACTCGGG-TGTTCACAAGAAATTTAG-TTGCATCTGTTG--TAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATA--AAAAGATCTGCTGACAGAATTCACTTGTTGTTCAATATCCAT--CTGGAGTCAA--GACAGACACCAAGA----TTCGAACACAGGTTGAAGGA-TTAATTTTTGAATCA-CCACTGTCCCTGAAATG-TTCTCATTAGATTTGCATTACGA--CGG---ACAAATATAATGACCTC-GTC-TATC-G---TGAGTTTCAACATATTGCCATGCATCCAAGACAC-ATGTCGT
gi|20 : CATGTTTTGGAAGGGCATTCCACAGATTTGGGACTA--TTGATCTGAAA
gi|21 : TAATCA-TACCA-TA-T--TTGTATAG--CACTCTTTACA-TA-CAACAT---GTACGCTCAAAGG----T-Ggtagccctaaaaagtaacttcaa
gi|23 : aataataaaAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AG
gi|24 : aaggcattggtgttccATTCCACAGTTTTGGGGCTA--TTGATCTGAAAAATCGA
gi|25 : TAATAA-TGCCA-TA-T--TTGTAT--AGCACCCT
gi|26 : aataataaaCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|3 : TAATAA-TACCA-TA-T--TT-TATAG--CACC-TTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA-----------TAT--A------GAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-ATT--AAGAT--CGATGACAA-G----------TTTTTT-----------TTCTTTTCTGAAAAA------CCTG-AAAAACAA-GAT-ACAA--T-A-AATACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAA--GCATATT-AAATG-GTAATGGG-GTAC-ACGCACGCACACA-CAGTACTCGATTATA-ATACATTAAAACATATAAAACAAAAACATAA--AAAAAAT-GTACCATTAAGAATAGAAATATTAAAA--CGCACAGTCAG-ACAGACAAA-ATTAATCT-TGTTAAAACTGAAAATTAGTCCT-G--AAAAGC--TTGATGGAAAAAAATTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATG-TTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTTA-TTGAAACATCGATCCCCATAAGTAACGGTTCGACTTTTTTGGAACAACATAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACGT-TTAGTAATCGCTTGATATA
gi|4 : aataatacataaAC-CATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG------TTTTTTTTTGGTTTTTTTGGTTTTTTTT--------------CTG-AAAAACAA-GAT-ACAA--T-A-AATACGCTAAA-TTAAAGCA-TAAGAAT-AA-CATCAGTTTTAAA--TCTTATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACA-CAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AATAAAAAAATTGTACCATTAGTGATAGAAATATTAAAAC--ACACAGTCAG--CAGAAAAA-AATAATCT-TTTT-AAACTGAAAATTAGTCCTG---AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTAAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGTTTG
gi|5 : GTAGACAACGCTCAATGCGATGT-AATGTTCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAA--ATGATAGATAA-TT--GAGTCATCAGCGTAAAAATGGTGATCAAG--CCATGATATCTACAGATG-GA-ACCAACT-GTTTTGTATACA-TTGTATATGAATTTGGGGCCCAGACATGAC--CCTTGCGG--TACACCG-AATTCATTACCAA-GGACCTAGACTTG
gi|5 : AGA-AGATAATCCAGTCTAGT----GATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAATAG-GGTAG-TGTGGTCAATAGTTCTCAAATGCAGCGG-AAAGATCTAGCATCAC-------AAGTACAG--TGACATCATTTTGGTCTAAAGATTGAGcagaagataatccagtctagtgatttgcctgttattcaacagatggtgaagtcggtgcaatagggtagtgtggtcaatagttctcaaatgcagcggaaagatctagcatcacaagtacagtgacatcattttggtctaaagattgag
gi|6 : gtagacaacgctcaatgcgatgtaatgttctctgcctgcgaagctttgtccataggtttaaatgatagataattgagtcatcagcgtaaaaatggtgatcaagccatgatatctacagatggaaccaactgttttgtatacattgtatatgaatttggggcccagacatgacccttgcggtacaccgaattcattaccaaggacctagacttgcTAATAA-TAC-A-TA-T--TTGTATAG--CACCCTTT-CA-TA-CAACAT---GTACGC-CAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATA---G-ATAT--G------GAT--AT-A---------C-CATAAA--TCA-CCAAAATAA--AAA--TAT-T---CT-ATT--AAGAT--CGATGACAA-GGGTTTTGTTTTTTTTTG-------TTGTTTTTTTTTT-----------TCTG-AAAAAACAAGAT-ACAA--T-ATA-TACGCTAAATTTAAAATATTAAGAAT-AAACATCAGTTT---AAAGCATATTGAAATGTATAAT-----------GTACGCACAC-ACAGTACTCGATTATGTATACATTAAAAC-TATAAA
gi|7 : aatagTAAGAA-AGCCA-TA-T--TTGTA---AGCGACCTTTTCA-TA-CAACAT---GTACGCTCAAA-G----T-GCT--GTACA------A-----G-CA-A----TA-TAAT----ATA------------ATA--ATA-----------A------GAT--AT-A---ATAATAC-CAATAAA-TCA-CAATAGTAA--AAA--CA--T--ACT-ATA--AA-----CGATGACAA-AG-----GTTT--------------TGG--------AAAAA--------ACTG-AAAAAC-AAGAT-ACAAATT-A-A-TACGCT-AT-TTAAAAC----AAAATCAAACATCAGTTC---AAAGCATATTGAAATG-GTAATGGA-GTAC-ACACCAGCACACA
gi|8 : tataataaaaataaaaATACTT-CTAGTAATCGCTTGATATAAA-CTGAACACTCATCATGTAAAGC----TAAGTATCTTA--TATTTTGTCCTATACAGGCAACCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATA-TGGTCGTAACGAGGGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAACGAGCATTACAATAATCT-AACCT-TGATGTAACT
gi|9 : TAATAA-TACCAATACT--TTGTATAA--CACCCTTTTCA-TAACAACAT---GTACGCTCAAGGG----T-GCT--TTACA------AT----G-CAT-----TA-TAATA---ATAG-------------A--ATAT--A-A--------------------A---GTAATAC-CATAAAA-TCA-CGAAAAT-ACCAAACCCATGT--ACTCATT--AAGACTGCGATGAAAA-GG----------CTTTTC-------TGG--------AAAAA--------CCTGAAAAAACAAAGATCACAA--TAA-A-TA-GAAATA-TTAAAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTTGTTTTGGTGTTTTTTTTTGGGGGGGGGGGGTCCAGAACAACAAAGGTGTAATAA
Alignments
lowQualScore : 222 1111 44444444444444444444444444444444444444 11 111111 444444444444444444444444444444444 1 11 1111 1 111111 11 111 111 11 11 11 11 11 222 11 11111 1 1 111 1 1 111 1 333333 666666666666666666 22 1 111 1 1 1 1 1 1 1 1 1 11 2222 1 111 1 2222 22 333 1 33 1 11 22222 11 1 1 1 1 1 1 222 11 11 1 11 11 11 1 22 1 1 1 1 1 1 1 3333333 11 11
lowQualScore : 3 3 3 55 222 0 3 3 555 9999 3 44 999999 7777 3 5555 3 666 55555555555555555555555555555555555555 55 3 777 4 3 4 4 7777 22 3 55 4 55 55 4 777777 0 888888888888888888888888888888888 5 1 7 6 99 6 6 3 00 4444 8 0 444444 8 8 0 8 66 444 3 777 33 22 3 88 88 8 66 0 8 66 444 11 3 2 66666 8 2 3 0 99 5 0 2 0 3 0 666 0 3 0 2 3 8 0 3 3 7 7 333 1 2 1 888888 888888888888888888 00 3 888 3 6 3 6 6 6 6 3 3 3 7 3 3 5 5 88 0000 5 7 111 0 2 4444 7 0 7 7 6 6 7 7 00 999 7 3 7 7 33 3 3 1 1 5 88 1 22222 77 5 5 5 5 5 5 000 1 88 88 5 66 88 1 99 3 7 00 6 7 3 3 5 5 5 5 1 5 2222222 88 1 1 88
lowQualScore : . . . .. ... . . . ... .... . .. ...... .... . .... . ... ...................................... .. . ... . . . . .... .. . .. . .. .. . ...... . ................................. . . . . .. . . . .. .... . . ...... . . . . .. ... . ... .. .. . .. .. . .. . . .. ... .. . . ..... . . . . .. . . . . . . ... . . . . . . . . . . . ... . . . ...... .................. .. . ... . . . . . . . . . . . . . . . .. .... . . ... . . .... . . . . . . . . .. ... . . . . .. . . . . . .. . ..... .. . . . . . . ... . .. .. . .. .. . .. . . .. . . . . . . . . . . ....... .. . . ..
lowQualScore : 6 6 6 00 666 5 1 1 444 6666 1 66 666666 7777 6 0000 6 444 44444444444444444444444444444444444444 00 6 000 0 4 0 0 7777 33 6 00 0 55 55 0 555555 7 444444444444444444444444444444444 7 4 3 7 22 7 7 3 22 8888 0 6 000000 0 0 6 0 33 555 2 555 88 55 2 00 88 0 88 8 0 88 222 00 2 5 77777 0 5 2 8 22 0 8 5 0 2 0 222 0 2 2 5 2 0 8 2 3 3 3 000 0 0 0 333333 777777777777777777 00 3 333 3 7 3 7 7 7 7 3 3 3 3 3 3 5 5 55 0000 0 3 777 7 0 7777 3 7 3 3 7 7 3 3 00 000 3 3 3 3 33 2 2 0 0 0 55 0 00000 55 5 0 0 5 5 5 555 0 00 00 5 55 00 0 33 3 3 77 7 3 3 3 5 5 5 5 0 5 0000000 00 0 0 55
consensus : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATAT--A-ATAT--A------GAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTGAAA--------CCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAAAAGCATATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-TAATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGA-GGGTCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
Reference ( family-4587 ) : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATAT--A-ATAT--A------GAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTGAAA--------CCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAAAAGCATATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-TAATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGA-GGGTCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
gi|1 : TAATAA-TACCA-TA-TATCTGTATATACCATCCTTTTCACTA-CAACAT---GTACGCTCAAAGG----T-GCT--TTATATAAAAAAT----GGCGAAG---TAGTAACA---ACAGTATGAAACGTTATATTATAT--A-ATAT--ATAAATAGAT--AT-ATAAATA-TAG-CATAAAA-TCC-CCAAAGT-A--AAA--TAT-T--ACT-ATT--AAGAT--CT-TGACCA-GG-----GTTTTTTTTTGG------TGGCTTTTTTTTGGGGGGGAGGGGTCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAA--------------GAAT-AA-CAT---TTTTAAAAAGCATATTGAAATG-GTGATGGGAGTCCCACGCACG-ACACAACAGTACTCAATTATT--TACATTAAAACATATAATACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATTTTAAAAC-CGCACAGTCAG-ACAGACAAA-A---ATCTCTGT--AAGCTGAAAAATACTCCCGG--AAAAGTCTTTGATGGAAAA--TGTGTTTTC-----AGTGATTTCTTGAATAACACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGACATTCACCAGTTTTGGGGCTGATTTGATTTGAAACATCGATCCCCATAAGTAACGGTTC-----TTTTGGAACAAC-TAGAGTGACACCGACTGTTTT-GTCGACCTAAGATT-CGGCGAGGCT-ATATACCTACTAGATATCG-TTGATATAAATCTGGACACTCATCATGTAA-GCTTTGTAAGTAACGTAAG-ATCTTTTA-TATTT------CCAAT--------GTA-------GTTTCTCTTAGTCTT-GGTGTTATAGTGGTCGTAACAA-GGGTCCTGCATACGATGACGTGCGGCAGTGTTTTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAA-ACCCACC-AAA-AGA-ATTACAATAATCTGAACCTATGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCTCAAGATTTGCTGACAGAATTCACTC-TTGTTCGATATCCATTCTTGGAGTCAAGCGATGAACACCAAGATTACTTTGAACACAGGTTGA-GGATTTATTTTTTGATTCACCCACTGTCACTGAAATGTTTCTAACTAGATTTGCA-TACGATCCAGAATGCAAATAT--TGATCTC-GTCTTATCTGAGTTGAGTTTCAAC-TATTGCCATGCATCCAAGACACAATGTCGTGTAGACAACGCTAAATGCGATGTCAATGTCTTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGTTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAAGCCCATGATATCTATAGATGAGACACCAACTGGTTTTGTGTACATTTGTATA-GAA-TTGGGACC---ATCTGACCACCTTGCAGGTTACACCGAAATTCATTACCACTGG--CTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGTTCACTGAGGTAAGATAGATA-TCCAGTCT--TA-GTGATTT-----TT-TC-TA-ACAGATGGTGAAGTCGGTGC-ACAGAGGTAGTTGTGGTCAATAG-TGTCAAATGCAGCGGAAAAGATTCAGCATCACCAAGTCAAAGTACAGACTGACTTCATTTTTGTCTAAAA--TGAG
gi|10 : TATCCATTCTTGGAGTCAAGC-ATG-ACACCAAGATT--T-CGAACACAGTTCGAAGGATTAATTTTTT-AATCACCCACTGTCACTGAAATATTTCTAATTAGACTTGCATTACGA-CCGGC-TGCAAATACAATGACCTCGGTCTTAGCTGTGTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|11 : AA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAGC----T-G-T--TTACA------AT----G-CATA----TA--------------------------A--ATAT--AGATAT--A------GAT--ATAA---ATAATAC-CAT--AA-CCA-CCAAAAT----AAA--CAT-T--ACT-A-T--GAGAT--CGATGACAAGGG-----GTTTTTTTTTG-------T--TTTTTTGTTG
gi|12 : TAATAAATACCA-TA-T--T-GTATTCAGCACCCTTT-CA-TA-CAACATTGTGTACGCTCAGAGG----TTGCT--TTACA------AT----G-CATAA---TA-TAATA---ATAG-----------ATA--ATAT--A----T-----------T--AC-A---ATAATACACATAAAAGTCA-CCAAAAT-A--AAA--CAT-TTCATT-ATTTTAAGAT--CGATGACAA-GG-----GTTTTttgttttttgttttttttttttttatga
gi|13 : ataatagataagtaaattaaTAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAAG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATA------------------GAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTT-------TGGTTTTTTTTT
gi|14 : taaaAAAACCTGAA---AA--AACAAA--G-ATCACAATAAATAGAAATATTAAAACGCCCACAGTCAGGACAGACAAA-A-TAATCT-TGTTCAAACTGAAAATTAGTCCTGATTAAATCC--CTGAT-------AT-TCTTTTCTTGGAAGTGACTTCCTttt
gi|15 : TAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGAGACCT-GTTAATTAAA------GTAACAG-CATAAGAGCA-CAATATGTACAC-----------GTAC-ATATAGA-GTAT--A------GAT--AT-
gi|16 : AGCACCCTTTTCA-TA-CAACAT---ATACGCTCAATGG----T-GCT--TTACA------AT----G-CGTA----TA-TAATA---ATA------------ACA--CTTT--A-CTATTAA------GATCGAT-G---ACAAgtac
gi|16 : AAT-A--ACA--CTT-T--ACT-ATT--AAGAT--CGATGACAA-GG--------------T--------TGGTTTTTTTCTGAAAAA------CCTG-AAAAACAggttggtttttttctgaaaaacctgaaaaaca
gi|17 : agcacccttttcatacaacatatacgctcaatggtgctttacaatgcgtatataatTATAGCACCCTTTTCA-TA-CA---T---TTACACTCA--GGC---T-GAT--TTACA------AT----G-C-TA----TA-TA----------------------TG--ATAT--G-ATAT--A------GAT---T-A---ATAATAC-CAT-AAA-TCATCCAAAAT-A--AAA--CAT-T--AC
gi|18 : TATAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTATA------
gi|19 : GACCGTTTGTTGACGATCACTGAGGTAAGAC-GATA-TCCAGCCTAGTACGTGATTTGCCTGTTATTCCATACAGATtggggaaaagttgttaataagtaataacat
gi|2 : CATTAGAAATAGAAATATTAAAAC--GCACAGTCAG-ACAGACAAATA-TA---T-TGTT-AAACTGAAAATTAGTCCTG---AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACA-AG-GTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCA--GTTTTGGGGCTA--T-GATTTGAAA--TCG-TACCCATAAGTAACGGTTCGAC-TTTT-GGAACAAC-TAGAGTGAC---GATTGTTTTTGTCGACCTAAGATTTCGGACAG-CTTATATACTT-CTAGTAA-CGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTGACGTAAGTATTTTATATTTTGT------CCTATACTACACAGCAACCAAATGTT--TCTTAGTCTTTGGTGTTA--ATGGTCGTAACGA-GGGTT-TGCATACGA-GACGT-CG-CAGTGTTCTGAACA-GTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAAA-GAG-ATT-CAATAATCT-AACCT-TGATGTAACTCGGG-TGTTCACAAGAAATTTAG-TTGCATCTGTTG--TAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATA--AAAAGATCTGCTGACAGAATTCACTTGTTGTTCAATATCCAT--CTGGAGTCAA--GACAGACACCAAGA----TTCGAACACAGGTTGAAGGA-TTAATTTTTGAATCA-CCACTGTCCCTGAAATG-TTCTCATTAGATTTGCATTACGA--CGG---ACAAATATAATGACCTC-GTC-TATC-G---TGAGTTTCAACATATTGCCATGCATCCAAGACAC-ATGTCGT
gi|20 : CATGTTTTGGAAGGGCATTCCACAGATTTGGGACTA--TTGATCTGAAA
gi|21 : TAATCA-TACCA-TA-T--TTGTATAG--CACTCTTTACA-TA-CAACAT---GTACGCTCAAAGG----T-Ggtagccctaaaaagtaacttcaa
gi|23 : aataataaaAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AG
gi|24 : aaggcattggtgttccATTCCACAGTTTTGGGGCTA--TTGATCTGAAAAATCGA
gi|25 : TAATAA-TGCCA-TA-T--TTGTAT--AGCACCCT
gi|26 : aataataaaCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|3 : TAATAA-TACCA-TA-T--TT-TATAG--CACC-TTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA-----------TAT--A------GAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-ATT--AAGAT--CGATGACAA-G----------TTTTTT-----------TTCTTTTCTGAAAAA------CCTG-AAAAACAA-GAT-ACAA--T-A-AATACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAA--GCATATT-AAATG-GTAATGGG-GTAC-ACGCACGCACACA-CAGTACTCGATTATA-ATACATTAAAACATATAAAACAAAAACATAA--AAAAAAT-GTACCATTAAGAATAGAAATATTAAAA--CGCACAGTCAG-ACAGACAAA-ATTAATCT-TGTTAAAACTGAAAATTAGTCCT-G--AAAAGC--TTGATGGAAAAAAATTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATG-TTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTTA-TTGAAACATCGATCCCCATAAGTAACGGTTCGACTTTTTTGGAACAACATAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACGT-TTAGTAATCGCTTGATATA
gi|4 : aataatacataaAC-CATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG------TTTTTTTTTGGTTTTTTTGGTTTTTTTT--------------CTG-AAAAACAA-GAT-ACAA--T-A-AATACGCTAAA-TTAAAGCA-TAAGAAT-AA-CATCAGTTTTAAA--TCTTATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACA-CAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AATAAAAAAATTGTACCATTAGTGATAGAAATATTAAAAC--ACACAGTCAG--CAGAAAAA-AATAATCT-TTTT-AAACTGAAAATTAGTCCTG---AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTAAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGTTTG
gi|5 : GTAGACAACGCTCAATGCGATGT-AATGTTCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAA--ATGATAGATAA-TT--GAGTCATCAGCGTAAAAATGGTGATCAAG--CCATGATATCTACAGATG-GA-ACCAACT-GTTTTGTATACA-TTGTATATGAATTTGGGGCCCAGACATGAC--CCTTGCGG--TACACCG-AATTCATTACCAA-GGACCTAGACTTG
gi|5 : AGA-AGATAATCCAGTCTAGT----GATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAATAG-GGTAG-TGTGGTCAATAGTTCTCAAATGCAGCGG-AAAGATCTAGCATCAC-------AAGTACAG--TGACATCATTTTGGTCTAAAGATTGAGcagaagataatccagtctagtgatttgcctgttattcaacagatggtgaagtcggtgcaatagggtagtgtggtcaatagttctcaaatgcagcggaaagatctagcatcacaagtacagtgacatcattttggtctaaagattgag
gi|6 : gtagacaacgctcaatgcgatgtaatgttctctgcctgcgaagctttgtccataggtttaaatgatagataattgagtcatcagcgtaaaaatggtgatcaagccatgatatctacagatggaaccaactgttttgtatacattgtatatgaatttggggcccagacatgacccttgcggtacaccgaattcattaccaaggacctagacttgcTAATAA-TAC-A-TA-T--TTGTATAG--CACCCTTT-CA-TA-CAACAT---GTACGC-CAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATA---G-ATAT--G------GAT--AT-A---------C-CATAAA--TCA-CCAAAATAA--AAA--TAT-T---CT-ATT--AAGAT--CGATGACAA-GGGTTTTGTTTTTTTTTG-------TTGTTTTTTTTTT-----------TCTG-AAAAAACAAGAT-ACAA--T-ATA-TACGCTAAATTTAAAATATTAAGAAT-AAACATCAGTTT---AAAGCATATTGAAATGTATAAT-----------GTACGCACAC-ACAGTACTCGATTATGTATACATTAAAAC-TATAAA
gi|7 : aatagTAAGAA-AGCCA-TA-T--TTGTA---AGCGACCTTTTCA-TA-CAACAT---GTACGCTCAAA-G----T-GCT--GTACA------A-----G-CA-A----TA-TAAT----ATA------------ATA--ATA-----------A------GAT--AT-A---ATAATAC-CAATAAA-TCA-CAATAGTAA--AAA--CA--T--ACT-ATA--AA-----CGATGACAA-AG-----GTTT--------------TGG--------AAAAA--------ACTG-AAAAAC-AAGAT-ACAAATT-A-A-TACGCT-AT-TTAAAAC----AAAATCAAACATCAGTTC---AAAGCATATTGAAATG-GTAATGGA-GTAC-ACACCAGCACACA
gi|8 : tataataaaaataaaaATACTT-CTAGTAATCGCTTGATATAAA-CTGAACACTCATCATGTAAAGC----TAAGTATCTTA--TATTTTGTCCTATACAGGCAACCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATA-TGGTCGTAACGAGGGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAACGAGCATTACAATAATCT-AACCT-TGATGTAACT
gi|9 : TAATAA-TACCAATACT--TTGTATAA--CACCCTTTTCA-TAACAACAT---GTACGCTCAAGGG----T-GCT--TTACA------AT----G-CAT-----TA-TAATA---ATAG-------------A--ATAT--A-A--------------------A---GTAATAC-CATAAAA-TCA-CGAAAAT-ACCAAACCCATGT--ACTCATT--AAGACTGCGATGAAAA-GG----------CTTTTC-------TGG--------AAAAA--------CCTGAAAAAACAAAGATCACAA--TAA-A-TA-GAAATA-TTAAAAC
blockSeqs : A A C . CAG . A TGT GACC T AA . AACA . AGAG . TGT CGTACATATAGAGTATA CG A . A A G T ACC CC G TC C TT TG G GTTTTG TGGTTTTTTTCTGAAAAAC A A A C AT A T A AT ATTA C A TAAA T . . A GTA A CAT TA TT T GC GA T TT . TC ATT . A G TTGGA . C T . A G T T A C T T G T . C . A T AGT A T G AGGCAA ACTACACAGCAACCAAAT C T TA G C . G G C C A C C A . . . . . AA G T GC G TT T A T G C T T C CT A G T T TG A A A C . . A TT . . . . . T T CAG A . . . A AC A C A A AC G A C T A . . T C . . . A G AT
blockSeqs : . . . . TAG . . . C . . . . . A . . ACACTTTACTATTAA . . . . A . . AA A . . . . . . G GGTTTTTTTGGTTTTTTTT . A A . . . . A A ATA . A TAAA . . . A AA A . . T T C A . AT . TA G . A G . . C T . C G . T . C . T G T . C . A . T G C A . GTA . . A . . . . . . C . . . . . . . G . . . A . . . . T . . A . . . . A A T A . A . G A . .
blockSeqs : . . . . TAG . . . . . . . . . . . . GATAATAGATATG . . . . A . . AA A . . . . . . G TTCTTTTCTGAAAAAC . A A . . . . . A ATA . A AAA . . . A AA . . . . . . A . T . T . . A T . . . . . C G . . . . . T . T . T A . A
blockSeqs : . . . . AG . . . . . . . . . . . . AATATAGATATA . . . . A . . A . . . . . . . G GTTGTTTTTTTTTTT . C . . . . . . T . . . AAA . . . . . . T . T . . A G . . . . . C
blockSeqs : . . . . AG . . . . . . . . . . . . TGATATGATATA . . . . A . . A . . . . . . . G CTGGAAAAAC . A . . . . . . A . . . .
blockSeqs : . . . . G . . . . . . . . . . . . GATAATATAT . . . . T . . A . . . . . . . . TGGAAAAAA . .
blockSeqs : . . . . G . . . . . . . . . . . . GATATATA . . . . A . . A . . . . . . . .
blockSeqs : . . . . G . . . . . . . . . . . . GAATATAA . . . . . . . A . . . . . . . .
blockSeqs : . . . . G . . . . . . . . . . . . GATAATA . . . . . . . A . . . . . . . .
blockSeqs : . . . . G . . . . . . . . . . . . ATAATAA . . . . . .
blockSeqs : G . . . . . . .
blockSeqs : A . . . . .
blockSeqCons : ** G** ****** **** GATATAGATATA************************** *** GTGGTTTTTTTTGAAAAAC************** A* ATA* AAA*** ** T* T* G** ** **
originalCons : TAATAA-TACCA-TA-T--TTGTATAGAGCACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAG-----------ATA--ATAT--A-ATAT--A------GAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTG-------TGGTTTTTTTTTGAAA--------CCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTTAAAAAGCATATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC-CGCACAGTCAG-ACAGACAAA-A-TAATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGA-GGGTCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
finalCons : TAATAA-TACCA-TA-T--TTGTATAG--CACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTACA------AT----G-CATA----TA-TAATA---ATAGATATAGATATA--------------------------GAT--AT-A---ATAATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTTGTGGTTTTTTTTGAAAAAC--------------CTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACATA-AGAAT-AAACATCAGTTTAAA---GCATATTGAAATG-GTAATGGG-GTAC-ACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAAC--GCACAGTCAG-ACAGACAAA-AT-AATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAGC--TTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTGAC--CGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------GTT-CTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGA-GGGTCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTTGTTTTGGTGTTTTTTTTTGGGGGGGGGGGGTCCAGAACAACAAAGGTGTAATAA
Alignments
lowQualScore : 1111 1111 11111111 333333333333333333333333 111 11 22222222 333333333333333333333333333333333333 1 11111 11 22 11 11 111 11 11 11 22222 1 222 11 11111 1 1 11 1 1 111 1 333333 77777777777777777777 1 111 1 1 1 1 1 1 1 1 1 11 2222 1 111 1 2222 22 333 1 33 1 11 22222 11 1 1 1 1 1 1 222 11 11 1 11 11 11 1 22 1 1 1 1 1 1 1 3333333 11 11
lowQualScore : 3 3 3 55 33 33 0 3 3 555 9999 3 44 999999 1111 7 1111 3 33333333 555555555555555555555555 4 33 111 4 777 4 8 4 4 7777 22 3 55 4 55 55 4 11111111 666666666666666666666666666666666666 5 1 7 6 99 6 6 3 22222 33 88 0 0 77 8 8 88 66 77 3 777 33 22 3 8 11 88 00000 0 8 0 6 444 11 3 2 66666 8 2 3 0 99 5 0 2 0 3 0 33 2 0 3 0 2 3 8 0 3 3 7 7 333 1 2 1 888888 22222222222222222222 6 3 888 3 6 3 6 6 6 6 3 3 3 7 3 3 5 5 88 0000 5 7 111 0 2 4444 7 0 7 7 6 6 7 7 00 999 7 3 7 7 33 3 3 1 1 5 88 1 22222 77 5 5 5 5 5 5 000 1 88 88 5 66 88 1 99 3 7 00 6 7 3 3 5 5 5 5 1 5 2222222 88 1 1 88
lowQualScore : . . . .. .. .. . . . ... .... . .. ...... .... . .... . ........ ........................ . .. ... . ... . . . . .... .. . .. . .. .. . ........ .................................... . . . . .. . . . ..... .. .. . . .. . . .. .. .. . ... .. .. . . .. .. ..... . . . . ... .. . . ..... . . . . .. . . . . . . .. . . . . . . . . . . . . ... . . . ...... .................... . . ... . . . . . . . . . . . . . . . .. .... . . ... . . .... . . . . . . . . .. ... . . . . .. . . . . . .. . ..... .. . . . . . . ... . .. .. . .. .. . .. . . .. . . . . . . . . . . ....... .. . . ..
lowQualScore : 6 6 6 00 99 99 5 1 1 444 6666 1 66 666666 4444 3 4444 6 99999999 000000000000000000000000 0 99 111 4 888 0 3 0 0 7777 33 6 00 0 55 55 0 22222222 999999999999999999999999999999999999 7 4 3 7 22 7 7 3 00000 66 88 8 8 00 0 0 66 33 00 2 555 88 55 2 0 00 88 66666 8 0 8 0 222 00 2 5 77777 0 5 2 8 22 0 8 5 0 2 0 88 5 0 2 2 5 2 0 8 2 3 3 3 000 0 0 0 333333 00000000000000000000 7 3 333 3 7 3 7 7 7 7 3 3 3 3 3 3 5 5 55 0000 0 3 777 7 0 7777 3 7 3 3 7 7 3 3 00 000 3 3 3 3 33 2 2 0 0 0 55 0 00000 55 5 0 0 5 5 5 555 0 00 00 5 55 00 0 33 3 3 77 7 3 3 3 5 5 5 5 0 5 0000000 00 0 0 55
consensus : TAATAA-TACCA-TA-T--TTGTAT--AG--CACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTAC------AAT----GC-ATA----TA-TAATA-------ATAG----------------AT-ATAG-A-TATAGAT--ATA-ATA---ATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTT-G-------TGGTTTTTT-T-T-------GAAAAACCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTT-AAAGCATATTGAAATG-GTAATGGG-GT-ACACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAA-CGC--ACAGTCAG-ACAGACAAA-A-T-AATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAG--CTTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTG--ACCGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------G-TTCTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGA-GGGTCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
Reference ( family-4587 ) : TAATAA-TACCA-TA-T--TTGTAT--AG--CACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTAC------AAT----GC-ATA----TA-TAATA-------ATAG----------------AT-ATAG-A-TATAGAT--ATA-ATA---ATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTT-G-------TGGTTTTTT-T-T-------GAAAAACCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTT--AAAGCATATTGAAATG-GTAATGGG-GT-ACACGCACGCACACAACAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATATTAAAA-CGC--ACAGTCAG-ACAGACAAA-A-T-AATCT-TGTT-AAACTGAAAATTAGTCCTGG--AAAAG--CTTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTG--ACCGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTAACGTAAGTATTTTNTACTATNT------CCAAT--------GTA-------G-TTCTCTTAGTCTT-GGTGTTATAGTGGTCGTAACGA-GGGTCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAA-GAG-ATTACAATAATCT-AACCT-TGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCNNAAGATCTGCTGACAGAATTCACTCGTTGTTCGATATCCATTCTTGGAGTCAAGCGACGGACACCAAGATT--TTCGAACACAGGTCGAAGGATTTATTTTTTGAATCACCCACTGTCACTGAAATGTTTCTAATTAGATTTGCATTACGA-CCGG--TGCAAATATAATGACCTC-GTCTTATCTG-GTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGNCGTGTAGACAACGCTNAATGCGATGTCAATGTCCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGNTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAGGCCCATGATATCTACAGATGAGACACCAACTGGTTTTGTGTACATTTGTATATGAATTTGGGGCCCAGACNTGACCACCTTGCGGGTTACACCGAAATTCATTACCANTGGACCTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGNTCACTGAGGTAAGACAGATA-TCCAGTCTAGTA-GTGATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAACAGAGGTAGTTGTGGTCAATAGTTNTCAAATGCAGCGGAAAAGATCCAGCATCACCAAGTCAAAGTACAGACTGACNTCATTTTNGTCTAAAGATTGAG
gi|1 : TAATAA-TACCA-TA-TATCTGTAT--ATACCATCCTTTTCACTA-CAACAT---GTACGCTCAAAGG----T-GCT--TTATATAAAAAATG---GCGAAG----TAGTAACA-------ACAGTATGAAACGTTATATTAT-ATAATA-TATAAATAGATATATAAATATAG-CATAAAA-TCC-CCAAAGT-A--AAA--TAT-T--ACT-ATT--AAGAT--CT-TGACCA-GG-----GTTTTTTTTTGG-------TGGCTTTTT-T-TTGGGGGGGAGGGGTCTG-AAAAACAAAGAT-ACAA--T-A-A-TACGC--------------TAAGAAT--AACATT--TTTAAAAAGCATATTGAAATG-GTGATGGGAGTCCCACGCACG-ACACAACAGTACTCAATTAT--TTACATTAAAACATATAATACATAAA---AA--AAAAAATTGTACCATTAGAAATAGAAATTTTAAAACCGC--ACAGTCAG-ACAGACAAA-----AATCTCTG-T-AAGCTGAAAAATACTCCCGG--AAAAGTCTTTGATGG--AAAATGTGTTTTC-----AGTGATTTCTTGAATAACACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGACATTCACCAGTTTTGGGGCTGATTTGATTTGAAACATCGATCCCCATAAGTAACGGTTC-----TTTTGGAACAAC-TAGAGTGACACCGACTGTTTT-GTCGACCTAAGA-TTCGGCGAGGC-TATATACCTACTAGATATCG-TTGATATAAATCTGGACACTCATCATGT-AAGCTTTGTAAGTAACGTAAG-ATCTTTTA-TATTT------CCAAT--------GTA-------GTTTCTCTTAGTCTT-GGTGTTATAGTGGTCGTAACAA-GGGTCCTGCATACGATGACGTGCGGCAGTGTTTTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAA-ACCCACC-AAA-AGA-ATTACAATAATCTGAACCTATGATGTAACTCGGGTTGTTCACAAGAGATTTAGTTTGCATCTGTTGTATAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATATCTCAAGATTTGCTGACAGAATTCACTC-TTGTTCGATATCCATTCTTGGAGTCAAGCGATGAACACCAAGATTACTTTGAACACAGGTTG-AGGATTTATTTTTTGATTCACCCACTGTCACTGAAATGTTTCTAACTAGATTTGCA-TACGATCCAGAATGCAAATAT--TGATCTC-GTCTTATCTGAGTTGAGTTTCAAC-TATTGCCATGCATCCAAGACACAATGTCGTGTAGACAACGCTAAATGCGATGTCAATGTCTTCTGCCTGCGAAGCTTTGTCCATAGGTTTAATTATGATAGTTAAGCTGAGAGTCATCAGCGTAAAAATGGTGATCAAAGCCCATGATATCTATAGATGAGACACCAACTGGTTTTGTGTACATTTGTATA-GAA-TTGGGACC---ATCTGACCACCTTGCAGGTTACACCGAAATTCATTACCACTGG--CTAGACTTGGCGCCGTCTATGCAGACCGTTTGTTGACGTTCACTGAGGTAAGATAGATA-TCCAGTCT--TA-GTGATTT-----TT-TC-TA-ACAGATGGTGAAGTCGGTGC-ACAGAGGTAGTTGTGGTCAATAG-TGTCAAATGCAGCGGAAAAGATTCAGCATCACCAAGTCAAAGTACAGACTGACTTCATTTTTGTCTAAAA--TGAG
gi|10 : TATCCATTCTTGGAGTCAAGC-ATG-ACACCAAGATT--T-CGAACACAGTTCGAAGGATTAATTTTTT-AATCACCCACTGTCACTGAAATATTTCTAATTAGACTTGCATTACGA-CCGGC-TGCAAATACAATGACCTCGGTCTTAGCTGTGTTGAGTTTCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|11 : AA-TACCA-TA-T--TTGTAT--AG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAGC----T-G-T--TTAC------AAT----GC-ATA----TA--AAT--------ATAG----------------AT-ATAG-A-TATA-------A-ATA---ATAC-CAT--AA-CCA-CCAAAAT----AAA--CAT-T--ACT-A-T--GAGAT--CGATGACAAGGG-----GTTTTTTTTT-G-------T--TTTTTTGT-T-------G
gi|12 : TAATAAATACCA-TA-T--T-GTATTCAG--CACCCTTT-CA-TA-CAACATTGTGTACGCTCAGAGG----TTGCT--TTAC------AAT----GC-ATAA---TA-TAATA-------ATAG----------------AT-A----A-TATAT-T--ACA-ATA---ATACACATAAAAGTCA-CCAAAAT-A--AAA--CAT-TTCATT-ATTTTAAGAT--CGATGACAA-GG-----GTTTTttgttttttgttttttttttttttatga
gi|13 : ataatagataagtaaattaaTAATAA-TACCA-TA-T--TTGTAT--AG--CACCCTTTTCA-TA-CAATAT---GTATGCTCAAAAG----T-GCT--TTAC------AAT----GC-ATA----TA-TAATA-------ATAG----------------AT-A-------ATAGAT--ATA-ATA---ATAC-CATAAAA-TCA-CCAAAAT-A--AAA--CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG-----GTTTTTTTTT-T-------TGGTTTTTT-T-T-------
gi|14 : taaaAAAACCTGAA---AA--AACAAA--G-ATCACAATAAATAGAAATATTAAAA-CGCCCACAGTCAGGACAGACAAA-A-T-AATCT-TGTTCAAACTGAAAATTAGTCCTGATTAAATC--CCTGAT-------AT-TCTTTTCTTGGAAGTGACTTCCTtttt
gi|15 : TAATAA-TACCA-TA-T--TTGTAT--AG--CACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGAGACCT-GTTAATTAA------AGTAACAGC-ATAAGAGCA-CAATATGTACACGTAC----------------AT-ATAG-AGTATAGAT--AT
gi|16 : --AG--CACCCTTTTCA-TA-CAACAT---ATACGCTCAATGG----T-GCT--TTAC------AAT----GC-GTA----TA-TAATA-------ATAgtac
gi|16 : AAT-A--ACA--CTT-T--ACT-ATT--AAGAT--CGATGACAA-GG--------------T---------TGGTTTTTT-TCT-------GAAAAACCTG-AAAAACAacactttactattaagatcgatgacaaggttggtttttttctgaaaaacctgaaaaaca
gi|17 : agcacccttttcatacaacatatacgctcaatggtgctttacaatgcgtatataatTAT--AG--CACCCTTTTCA-TA-CA---T---TTACACTCA--GGC---T-GAT--TTAC------AAT----GCTATA----TA-T--------------G----------------AT-AT-G-A-TATAGAT---TA-ATA---ATAC-CAT-AAA-TCATCCAAAAT-A--AAA--CAT-T--AC
gi|18 : TAT--AG--CACCCTTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTAT------A
gi|19 : GACCGTTTGTTGACGATCACTGAGGTAAGAC-GATA-TCCAGCCTAGTACGTGATTTGCCTGTTATTCCATACAGATtggggaaaagttgttaataagtaataacat
gi|2 : CATTAGAAATAGAAATATTAAAA-CGC--ACAGTCAG-ACAGACAAATA-T-A---T-TGTT-AAACTGAAAATTAGTCCTG---AAAAG--CTTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACA-AG-GTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCA--GTTTTGGGGCTA--T-GATTTGAAA--TCG-TACCCATAAGTAACGGTTCGAC-TTTT-GGAACAAC-TAGAGTG--AC-GATTGTTTTTGTCGACCTAAGATTTCGGACAG-CTTATATACTT-CTAGTAA-CGCTTGATATAAA-CTGGACACTCATCATGTAAAGCTTTGTAAGTGACGTAAGTATTTTATATTTTGT------CCTATACTACACAGCAACCAAATG-TT-TCTTAGTCTTTGGTGTTA--ATGGTCGTAACGA-GGGTT-TGCATACGA-GACGT-CG-CAGTGTTCTGAACA-GTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACCAAAA-GAG-ATT-CAATAATCT-AACCT-TGATGTAACTCGGG-TGTTCACAAGAAATTTAG-TTGCATCTGTTG--TAATACTTTCTGATGTGGCCTATTTGCCGCAACTGTGCATA--AAAAGATCTGCTGACAGAATTCACTTGTTGTTCAATATCCAT--CTGGAGTCAA--GACAGACACCAAGA----TTCGAACACAGGTTGAAGGA-TTAATTTTTGAATCA-CCACTGTCCCTGAAATG-TTCTCATTAGATTTGCATTACGA--CGG---ACAAATATAATGACCTC-GTC-TATC-G---TGAGTTTCAACATATTGCCATGCATCCAAGACAC-ATGTCGT
gi|20 : CATGTTTTGGAAGGGCATTCCACAGATTTGGGACTA--TTGATCTGAAA
gi|21 : TAATCA-TACCA-TA-T--TTGTAT--AG--CACTCTTTACA-TA-CAACAT---GTACGCTCAAAGG----T-Ggtagccctaaaaagtaacttcaa
gi|23 : aataataaaAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AG
gi|24 : aaggcattggtgttccATTCCACAGTTTTGGGGCTA--TTGATCTGAAAAATCGA
gi|25 : TAATAA-TGCCA-TA-T--TTGTAT--AG--CACCCT
gi|26 : aataataaaCAACATATTGCCATGCATCCAAGACACAATGACGT
gi|3 : TAATAA-TACCA-TA-T--TT-TAT--AG--CACC-TTTTCA-TA-CAACAT---GTACGCTCAAAGG----T-GCT--TTAC------AAT----GC-ATA----TA-TAATA-------ATAG----------------AT-ATA------TAGAT--ATA-ATA---ATAC-CATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-ATT--AAGAT--CGATGACAA-G---------TTTTTTT------------TCTTTT-C-T-------GAAAAACCTG-AAAAACAA-GAT-ACAA--T-A-AATACGCTAAA-TTAAAACA-TAAGAAT-AAACATCAGTTTT-AAAGCATATT-AAATG-GTAATGGG-GT-ACACGCACGCACACA-CAGTACTCGATTATA-ATACATTAAAACATATAAAACAAAAACATAA--AAAAAAT-GTACCATTAAGAATAGAAATATTAAAA-CGC--ACAGTCAG-ACAGACAAA-A-TTAATCT-TGTTAAAACTGAAAATTAGTCCT-G--AAAAG--CTTGATGGAAAAAAATTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATG-TTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTTA-TTGAAACATCGATCCCCATAAGTAACGGTTCGACTTTTTTGGAACAACATAGAGTG--ACCGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACGT-TTAGTAATCGCTTGATATA
gi|4 : aataatacataaAC-CATAAAA-TCA-CCAAAAT-A--AAAA-CAT-T--ACT-ATT--AAGAT--CGATGACAA-GG------TTTTTTTTT-GGTTTTTTTGGTTTTTT-T-T--------------CTG-AAAAACAA-GAT-ACAA--T-A-AATACGCTAAA-TTAAAGCA-TAAGAAT-AA-CATCAGTTTT-AAATCTTATTGAAATG-GTAATGGG-GT-ACACGCACGCACACA-CAGTACTCGATTATA-ATACATTAAAACATATAAAACATAAA---AATAAAAAAATTGTACCATTAGTGATAGAAATATTAAAA-CAC--ACAGTCAG--CAGAAAAA-AAT-AATCT-TTTT-AAACTGAAAATTAGTCCTG---AAAAG--CTTGATGGAAAAAATGTGTTTTC-----AGTGATTTCTTGAA-AGCACACAGTGTTCTACAGTCCCTTACATGTTTTGGAAGGGCATTCCACAGTTTTGGGGCTA--TTGATTTGAAACATCGATCCCCATAAGTAACGGTTCGAC-TTTTTGGAACAAC-TAGAGTA--ACCGATTGTTTT-GTCGACCTAAGATTTCGGGCAGGCTTATATACTT-CTAGTAATCGTTTG
gi|5 : GTAGACAACGCTCAATGCGATGT-AATGTTCTCTGCCTGCGAAGCTTTGTCCATAGGTTTAA--ATGATAGATAA-TT--GAGTCATCAGCGTAAAAATGGTGATCAAG--CCATGATATCTACAGATG-GA-ACCAACT-GTTTTGTATACA-TTGTATATGAATTTGGGGCCCAGACATGAC--CCTTGCGG--TACACCG-AATTCATTACCAA-GGACCTAGACTTG
gi|5 : AGA-AGATAATCCAGTCTAGT----GATTTGCCTGTTATT-CA-ACAGATGGTGAAGTCGGTGCAATAG-GGTAG-TGTGGTCAATAGTTCTCAAATGCAGCGG-AAAGATCTAGCATCAC-------AAGTACAG--TGACATCATTTTGGTCTAAAGATTGAGcagaagataatccagtctagtgatttgcctgttattcaacagatggtgaagtcggtgcaatagggtagtgtggtcaatagttctcaaatgcagcggaaagatctagcatcacaagtacagtgacatcattttggtctaaagattgag
gi|6 : gtagacaacgctcaatgcgatgtaatgttctctgcctgcgaagctttgtccataggtttaaatgatagataattgagtcatcagcgtaaaaatggtgatcaagccatgatatctacagatggaaccaactgttttgtatacattgtatatgaatttggggcccagacatgacccttgcggtacaccgaattcattaccaaggacctagacttgcTAATAA-TAC-A-TA-T--TTGTAT--AG--CACCCTTT-CA-TA-CAACAT---GTACGC-CAAAGG----T-GCT--TTAC------AAT----GC-ATA----TA-TAATA-------ATAG----------------ATAATAG-A-TATGGAT------------ATAC-CAT-AAA-TCA-CCAAAATAA--AAA--TAT-T---CT-ATT--AAGAT--CGATGACAA-GGGTTTTGTTTTTTTTT-G-------TTGTTTTTT-T-T-------T----TTCTG-AAAAAACAAGAT-ACAA--T-ATA-TACGCTAAATTTAAAATATTAAGAAT-AAACATCAGTTT--AAAGCATATTGAAATGTATAAT-----------GTACGCACAC-ACAGTACTCGATTATGTATACATTAAAAC-TATAAA
gi|7 : aatagTAAGAA-AGCCA-TA-T--TTGTA---AG--CGACCTTTTCA-TA-CAACAT---GTACGCTCAAA-G----T-GCT--GTAC------AA-----GC-A-A----TA-TAAT--------ATA-----------------AT-A----A-TA-AGAT--ATA-ATA---ATAC-CAATAAA-TCA-CAATAGTAA--AAA--CA--T--ACT-ATA--AA-----CGATGACAA-AG-----G-----TTTT-G---------------------------GAAAAAACTG-AAAAAC-AAGAT-ACAAATT-A-A-TACGCT-AT-TTAAAAC----AAAATCAAACATCAGTTC--AAAGCATATTGAAATG-GTAATGGA-GT-ACACACCAGCACACA
gi|8 : tataataaaaataaaaATACTT-CTAGTAATCGCTTGATATAAA-CTGAACACTCATCATGTAAAGC----TAAGTATCTTA--TATTTTGTCCTATACAGGCAACCAAT--------GTA-------G-TTCTCTTAGTCTT-GGTGTTATA-TGGTCGTAACGAGGGGCCCTGCATACGA-GACGTGCGGCAGTGTTCTGAACACGTTGGAGCTTGCCCAGAACTGTCTTTGGAACACCCACC-AAACGAGCATTACAATAATCT-AACCT-TGATGTAACT
gi|9 : TAATAA-TACCAATACT--TTGTAT--AA--CACCCTTTTCA-TAACAACAT---GTACGCTCAAGGG----T-GCT--TTAC------AAT----GC-AT-----TA-TAATA-------ATAG----------------A-------A-TATAA------A-GTA---ATAC-CATAAAA-TCA-CGAAAAT-ACCAAACCCATGT--ACTCATT--AAGACTGCGATGAAAA-GG--------CTTTTCT-G---------------------------GAAAAACCTGAAAAAACAAAGATCACAA--TAA-A-TA-GAAATA-TTAAAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTTGTTTTGGTGTTTTTTTTTGGGGGGGGGGGGTCCAGAACAACAAAGGTGTAATAA