lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 666 11 11 666666666 2 2222222 33333 11 6666666666666666666666666666666666666 11 111 1 1 1111 1 888888 11 22 8888888 33333 1 2222222 11 1 1 4444444444 2222 33333333 11 11 1111 11 111 77777777777777777 1111 88888888888 11 22
lowQualScore : 222 33 33 444444444 8 4 8 2 0 9999999 33333 88 6 3 9999999999999999999999999999999999999 00 777 0 0 3 0 7777 4 333333 6 33 3 77 2 1111111 4 33333 3 8888888 88 0 0 9999999999 6 2 99 1111 55555555 1 8 5 11 8 11 3 7777 11 8 7 444 8 44444444444444444 7 11 7777 5 44444444444 7 88 00
lowQualScore : ... .. .. ......... . . . . . ....... ..... .. . . ..................................... .. ... . . . . .... . ...... . .. . .. . ....... . ..... . ....... .. . . .......... . . .. .... ........ . . . .. . .. . .... .. . . ... . ................. . .. .... . ........... . .. ..
lowQualScore : 000 88 88 888888888 0 8 0 8 0 8888888 33333 33 7 7 2222222222222222222222222222222222222 22 555 0 0 2 2 8888 5 000000 0 88 2 55 5 7777777 7 33333 3 7777777 33 0 0 8888888888 0 5 55 2222 22222222 0 0 0 00 0 00 0 0000 00 0 8 000 0 44444444444444444 8 88 0000 6 55555555555 3 33 77
consensus : ACCATT---CTA--TGTAT--AAAAAAAA-AATTA-AGGATTGTAA-TTGGCATTAAACAATATGTCCCTCTCC-CGCTATCTCCCCATCGGA----GGATTGG-----TAT--AAGCAANTTGTAGAACAAGCAC------------------------GAGAGAGAGA-GAG---AGA-G-AGGGGGG---GGTGTCACGTCGGCTCAATTTCCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTCATAT--GCGATTTTATTTTCTTAATAAAAAAAATATGAAANGAATA--CA---AAGTANTACTACC-----TTTA-AAGAC--TCTA-TTGTC--TTTTT-GAAA-GCAT--TG-TGATAAATAGTATTAGATACCCTTTT----CCTAGTTCT--TGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAGA-----TTTA-T-A-AAGCACATATAAAAC----AACAATTA-AAT-TAG---TATGATAATATGC--ATTTCA-TGAAC
Reference ( gi|1 ) : ACCATTAATCTA--TGTAT--AAAAAAACCCATTA-AGGATTGTAA-TTGGCATTAAACAATATGTCCCTCTTC-CGCCATCTCCCAATCGGA----GGATTGG-----TAT--AAGCAACTTATA-------TAT------------------------GAGAGAGAGA-GAG---AGA-G-AGGGGAG---GGTGCCACATCAGCTCAATTTCCATTAGGATTAGAAGCATGTGCACTTAGAACTGTATTAATGGAATATCATTGCAATGAGTTCATAT--GCAATTTTATTTTCTTAATAAAAAA--TATGAAACGAATA--CATGCAAGTATTACTACC-----TTTA-AAGAC--CCTA-TTGTC--TTTTT-GAAA-GCATTATG-TTATAGATAGTATTAGATACCCTTTT----CCTAGTTCC--TGGGTCATGTAATCAGTGATTTTCAA-ATCAACCCC--G-GG--AATAGTGGATG----GA--TTG-GAAAGCAT---TAT-TTAAGA-----TTTAATTA-AAGCACATGTAAAAC----AACAATTAAAATATAATATTATGATAATATGC--ATTTCA-TGAACAC
gi|10 : ACCATT---CTA--TGTATTTAAAAAAAAAAATTA-AGGATTGTAA-TTGACATTAAACAATATGT-----------CCATCTCTCCATC-GA----GGATTGG-----TAT--AAGCAATTT
gi|2 : cgCCATT---TTA--TGTAT--AAAAAAAAC-ATTA--GGATTGTAA-TTGACATTAGATAATATGTCCCTCTCC-CGCTATCTCCCCATCG-A----GGATTGG-----AAT--GA-CAACTT-TA-------NNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGAGAGA-TAG---AGA-G-AGAGAGA---TGTGTCACATCAGCTCAGTTTCCATTAGGATTAGAAGCATGCGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTCATATATGCGATTTTATTTTCTTAATAAAAAAAATATGAAACGAATA--------AGTAATACTACC-----TTTA-AAGAC--TCTAATTGTT--TTTTTTAAAA-GCAT---G-TGATAAATAGTATTAGATACCCTTTT----CCTAGTTCT--TGGGTCATGTAATCTGTGATTTTCAA-ATCAACCCC--G-GG--AATAACAGATG----GA--TTG-GTAAGTAT---TAT-TTAAGT-----TTTA---A-AAGCACATATACATCTTTTAACATTTCAAATATAAtt
gi|5 : gTCTACTTGTAT--AAAAAAA--AATTACAGGATTGTAATTTGGCATTAAACAATATGTCCCTCCTCATGCTAACTCCC-ATCCGACCGCGGATTGGGTGACTATTCAAGTAAAATGTAGAACAAGCAC------------------------GAGAGAGAGATAAGACCAGATG-AGGG
gi|11 : atA--TGTAT--AAAAAAA-----------------A-TTGGCATTAAACAATATGCCCCTCTCC-CGCTATCTCCCCATC-GA----GGAcaag
gi|12 : gaccattctatgaacAA-TTGGCATTAAACGATATGTCCCTCTCC-CGCTATCTCCCCATCG
gi|7 : ccaccattctatgtacatgtatggaaaaaa------------------------GAGAGAGAGA-GAG---AGA-G-AG---AG---AGTGTCACATCAGCTCAATTCCCTTTAGAATTAAAAGCATGTGCACTT----CTGTATTAATGGATTATCATTGCAATGAATTCATAT--GCAATTT
gi|13 : ------------------------GAGAGAGACA-GAG---GGG-GGAGGGGAGAGGGGTGTCACATCAGCACAATTTCCATTAGGATTAGAAGCATGTGCAC
gi|8 : GGGGGG---GGGG--ATGTTGGTTCAATTTCCATTACAATTAGAGGCATGTGTAC---------TACTAATAGAATAGGACTGAAATGAATTAATAT--GGA-----ATTTTCTTAATAAAAA
gi|4 : ATAT--GCGATTTTATTTTCTTAATTAAAAA--TATGAAAAGAATATTCA---AAGTATTACTACC-----TTTA-AAGAC--TC---TTGTCTTTTTTT-GAAA-GCATGTTGATTA-AAATAGTATTAGATACCC-TTT----CCTAGTTTCTTTGGGTCATGTAATCAGTGATTTTCAA-ATAAACCCC--G-GA--AATAGCGGATC----GATTTTG-GAAAGTATTGGTAT-TTAAGT-----TTT--TAA-AAGCACATATAAAAC----GACAA-TA-----------TATGATAATATGC--ATTTCATTGAAC
gi|3 : GAATAAGTATGTAATTACTACAACCGAAATTTTGGAAGACTTCCTA-GTGTC--TGTTT-GAAAAGCA--ATG-TGA-AAATAGTATTAGATA------TAAGACTAAGCTCT--T---TCATGTAATCAGTGATTTTCAATATAAACCCCTTGCGGTTAATAGCGGTCGGGCTGA--TTGTGAGAGTAT---TATATTAGAAACGTTTTTA---A-AAGCACATATCAAAC----ACAAAGTACAAT-TAGTACT----TGATATGCCTATCTCA--GAAg
gi|6 : tttatagcgatttttccatttttctttaattacacatacatatattttggagagtcgT-GAAA-GCAT---G-TGATAAATAGTATTAGATACCTTTTT----CCTAGTT----------------TCAGTGATTTTCAA-ATCCACCCC--G-GG--AATAGCCGATG----GA--TTG-AAAAGTAT---CAT-TTAAAA-----T-----------CACATTTAA-------AACAATTA-----------TATGATAATATGC--ATTTCA-TGAAtgaaa
gi|9 : GTTATCAGTGATTTGCAA-GTGAAAACC--G-GG--AACAGTGGATA----AA--TAG-GAAATAAT---TAT-TTA--A-----TTT--TTATAAGCACATATAAAAC----TACAATTA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AGAGAGAGAGAGAGAGAGAGAGATTGAGCTTGAGCTTCATTTACCTTTAGAATT
Unaligned ( gi|15 ): AGAGAGAGAGAGAGAGAGAGAGATGTAACATCAATATTCATAGTCATTCCCTT
Unaligned ( gi|16 ): CTTATATATTAAAAAACATTAAGAAATGTAGTTGGCA
Unaligned ( gi|17 ): ACCAATACAATATATTTCTAAAGGACCAACC
Alignments
lowQualScore : 111 111111 11111111 33333333 1 1111 22222 11 1 777777777777777777777777777 111 111 222222 111 11 222222 1111 66666666 22222 1 11111 1 11 11 111111 1111 111 1111 111 33333333333333 55555555555555 1 11 11
lowQualScore : 111 99 999999 66666666 22222222 6 6 2 9 7777 55555 33 2 1 2 222222222222222222222222222 6 111 6 6 111 3 1 6 4 3 6 111111 99 444 11 999 8 9 888888 8888 33333333 1 55555 0 77777 0 33 8 11 333333 5 7777 444 5 6 1 99 6 99 4444 99 6 111 6 33333333333333 0 44444444444444 0 2 33 33
lowQualScore : ... .. ...... ........ ........ . . . . .... ..... .. . . . ........................... . ... . . ... . . . . . . ...... .. ... .. ... . . ...... .... ........ . ..... . ..... . .. . .. ...... . .... ... . . . .. . .. .... .. . ... . .............. . .............. . . .. ..
lowQualScore : 777 22 222222 88888888 00000000 7 7 5 2 0000 00000 88 5 0 0 000000000000000000000000000 7 777 7 7 777 7 7 7 8 3 7 555555 22 000 00 444 0 2 888888 5555 00000000 0 00000 0 00000 0 88 0 66 888888 6 0000 222 0 7 0 22 7 22 2222 22 7 777 7 22222222222222 8 11111111111111 0 5 88 22
consensus : ACCATT---CTA--TG------TA----T---AAAAAAAAA-ATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TCCCGCTATCTCCCCATC-GA----GGATTGG-----TAT--AAGCAACTTGTAGAACAAGCAC-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---GGGGTGTCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTC--ATATGCGATTTT---ATTTTC--TTAAT-AAAAA-AAATAT------GAAAN---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACT--CT-ATTG-TC--TTTTTGAAA-GCATTGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTT--CTTGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAGN-----TTTA---AAAGCACATATAAAACAACAATT-A-AAT----TANTA-TGATAATATGC--ATTTCA-TGAAC
Reference ( family-4581 ) : ACCATT---CTA--TG------TA----T---AAAAAAAAA-ATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TCCCGCTATCTCCCCATCGGA----GGATTGG-----TAT--AAGCAANTTGTAGAACAAGCAC-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---GGGGTGTCA-CGTCGGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTC--ATATGCGATTTT---ATTTTC--TTAAT-AAAAA-AAATAT------GAAAN---GAATA--CA---AAGTANTACTACC-----TTTA-AAGACT--CT-ATTG-TC--TTTTTGAAA-GCATTGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTT--CTTGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAGA-----TTTA--TAAAGCACATATAAAACAACAATT-A-AAT----TAGTA-TGATAATATGC--ATTTCA-TGAAC
gi|1 : ACCATTAATCTA--TG------TA----T---AAAAAAACCCATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TTCCGCCATCTCCCAATCGGA----GGATTGG-----TAT--AAGCAACTTATA-------TAT-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---AGGGTGCCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTTAGAACTGTATTAATGGAATATCATTGCAATGAGTTC--ATATGCAATTTT---ATTTTC--TTAAT-AAAAA-A--TAT------GAAAC---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACC--CT-ATTG-TC--TTTTTGAAA-GCATTATGTTAT--AGATAGTATTAGATACCCTTTT----CCTAGTT--CCTGGGTCATGTAATCAGTGATTTTCAA-ATCAACCCC--G-GG--AATAGTGGATG----GA--TTG-GAAAGCAT---TAT-TTAAGA-----TTTAATTAAAGCACATGTAAAACAACAATTAA-AATATAATATTA-TGATAATATGC--ATTTCA-TGAAC
gi|10 : ACCATT---CTA--TG------TA----TTTAAAAAAAAAA-ATTA-AGGATTGTAATT-GACATTAAACAATATGTCC-----------ATCTCTCCATC-GA----GGATTGG-----TAT--AAGCAATTTac
gi|11 : cgACCATT---CTA--TGAACATGTA----T---AAAAAAAA-----------------TT-GGCATTAAACAATATGCCCCTC-TCCCGCTATCTCCCCATC-GA----GGAtt
gi|12 : gACCATT---CTA--TG------TACATGT---ATGGAAAAA-A------------AATT-GGCATTAAACGATATGTCCCTC-TCCCGCTATCTCCCCATCG
gi|13 : cc-----------------GAGAGAGACA-GAG---GGG-GGAGGGGAGAGGGGTGTCA-CATCAGCACAATTT-CCATTAGGATTAGAAGCATGTGCAC
gi|14 : AGAGAGA-GAG---AGA-G-AGAGA---GAGAT-TGAGCTTGAGCTTCATTTACCTTTAGAATT
gi|2 : CCATT---TTA--TG------TA----T---AAAAAAAAC-ATTA--GGATTGTAATT-GACATTAGATAATATGTCCCTC-TCCCGCTATCTCCCCATC-GA----GGATTGG-----AAT--GA-CAACTT-TANNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGAGAGA-TAG---AGA-G-AGAGA---GATGTGTCA-CATCAGCTCAGTTT-CCATTAGGATTAGAAGCATGCGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTCATATATGCGATTTT---ATTTTC--TTAAT-AAAAA-AAATAT------GAAAC---GAAT--------AAGTAATACTACC-----TTTA-AAGACT--CTAATTGTTT--TTTTTAAAA-GCA-TGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTT--CTTGGGTCATGTAATCTGTGATTTTCAA-ATCAACCCC--G-GG--AATAACAGATG----GA--TTG-GTAAGTAT---TAT-TTAAGT-----TTTA---AAAGCACATATA
gi|3 : gTTT--ATA-GCGATTTTTCCATTTTTCTTTAATTACACATACATATATTTTGGAGAGTCGGAATAAGTATGTAATTACTACAACCGAAATTTTGGAAGACTTCCT-AGTG-TC--TGTTTGAAAAGCAATGTG--A---AAATAGTATTAGATA------TAAGACTAAGCT--CTT---TCATGTAATCAGTGATTTTCAATATAAACCCCTTGCGGTTAATAGCGGTCGGGCTGA--TTGTGAGAGTAT---TATATTAGAAACGTTTTTA---AAAGCACATATCAAACACAAAGT-ACAAT----TAGTACT--TGATATGCCTATCTCA--GAAcatcttttaacatttcaaatataa
gi|4 : --ATATGCGATTTT---ATTTTC--TTAAT---TAA-AAATAT------GAAAA---GAATATTCA---AAGTATTACTACC-----TTTA-AAGACT--C---TTG-TCTTTTTTTGAAA-GCATGTTG--ATTAAAATAGTATTAGATACCC-TTT----CCTAGTTTCTTTGGGTCATGTAATCAGTGATTTTCAA-ATAAACCCC--G-GA--AATAGCGGATC----GATTTTG-GAAAGTATTGGTAT-TTAAGT-----TTTT--AAAAGCACATATAAAACGACAAT-------------ATA-TGATAATATGC--ATTTCATTGAACtgaaa
gi|5 : ATT---CTACTTG------TA----T---AAAAAAAAA--TTACAGGATTGTAATTTGGCATTAAACAATATGTCCCTCCTCATGCTAACTCCC-ATCCGACCGCGGATTGGGTGACTATTCAAGTAAAATGTAGAACAAGCAC-----------------GAGAGAGAGATAAGACCAGATG-AGGGg
gi|6 : TGAAA-GCAT-GTG--AT--AAATAGTATTAGATACCTTTTT----CCTAGTT----------------TCAGTGATTTTCAA-ATCCACCCC--G-GG--AATAGCCGATG----GA--TTG-AAAAGTAT---CAT-TTAAAA-----T----------CACATTTAA---AACAATT-A-----------TA-TGATAATATGC--ATTTCA-TGAAcaag
gi|7 : -----------------GAGAGAGAGA-GAG---AGA-G-AGAGA---G---TGTCA-CATCAGCTCAATTC-CCTTTAGAATTAAAAGCATGTGCACTT----CTGTATTAATGGATTATCATTGCAATGAATTC--ATATGCAATTT
gi|8 : GGGG---GGGGGG--A-TGTTGGTTCAATTT-CCATTACAATTAGAGGCATGTGTAC---------TACTAATAGAATAGGACTGAAATGAATTA--ATATG-GA-------ATTTTC--TTAAT-AAAAA-
gi|9 : GTTATCAGTGATTTGCAA-GTGAAAACC--G-GG--AACAGTGGATA----AA--TAG-GAAATAAT---TAT-TTAATT-----TTTA--T-AAGCACATATAAAACTACAATT-A-TAT----
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGAGAGAGAGAGAGAGAGAGAGATGTAACATCAATATTCATAGTCATTCCCTT
Unaligned ( gi|16 ): CTTATATATTAAAAAACATTAAGAAATGTAGTTGGCA
Unaligned ( gi|17 ): ACCAATACAATATATTTCTAAAGGACCAACC
Alignments
lowQualScore : 111 111111 11111111 33333333 11111 22222 11 1 777777777777777777777777777 111 111 222222 111 11 22 222222 1111 44444444 22222 1 11 111 1 11 11 111111 11111 111 1111 111 2222222 111 55555555555555 1 11 11
lowQualScore : 111 99 999999 66666666 22222222 6 6 22222 6 55555 33 2 0 2 222222222222222222222222222 5 000 5 5 000 4 0 00 5 6 111111 99 444 11 8 8 44 888888 8888 66666666 1 55555 0 33 666 0 11 8 11 333333 77777 444 5 6 1 99 6 99 4444 99 6 111 6 7777777 111 0 22222222222222 0 2 33 33
lowQualScore : ... .. ...... ........ ........ . . ..... . ..... .. . . . ........................... . ... . . ... . . .. . . ...... .. ... .. . . .. ...... .... ........ . ..... . .. ... . .. . .. ...... ..... ... . . . .. . .. .... .. . ... . ....... ... . .............. . . .. ..
lowQualScore : 777 22 222222 88888888 00000000 7 7 55555 7 00000 88 5 2 0 000000000000000000000000000 7 000 0 0 000 0 4 99 7 7 555555 22 000 00 0 0 55 888888 5555 22222222 2 00000 0 88 222 0 00 0 66 888888 88888 222 0 7 0 22 7 22 2222 22 7 777 7 7777777 777 8 11111111111111 0 5 88 22
consensus : ACCATT---CTA--TG------TA----T---AAAAAAAAA-ATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----TAT--AAGCAACTTGTAGAACAAGCAC-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---GGGGTGTCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTC--ATATGCGATTTT---ATTTTC--TTAAT-AAAAA-A-ATAT------GAAAN---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACT--CT-ATTG-TCTTTTT--GAAA-GCATTGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAAAACAACAATT-A-AAT----TANTA-TGATAATATGC--ATTTCA-TGAAC
Reference ( family-4581 ) : ACCATT---CTA--TG------TA----T---AAAAAAAAA-ATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----TAT--AAGCAACTTGTAGAACAAGCAC-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---GGGGTGTCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTC--ATATGCGATTTT---ATTTTC--TTAAT-AAAAA-AAATAT------GAAAN---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACT--CT-ATTG-TCTTTTT--GAAA-GCATTGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAG-----NTTTA---AAAGCACATATAAAACAACAATT-A-AAT----TANTA-TGATAATATGC--ATTTCA-TGAAC
gi|1 : ACCATTAATCTA--TG------TA----T---AAAAAAACCCATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TTCCGCCATCTCCC---A-ATCGGAGGATTGG-----TAT--AAGCAACTTATA-------TAT-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---AGGGTGCCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTTAGAACTGTATTAATGGAATATCATTGCAATGAGTTC--ATATGCAATTTT---ATTTTC--TTAAT-AAAAA-A--TAT------GAAAC---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACC--CT-ATTG-TCTTTTT--GAAA-GCATTATGTTAT--AGATAGTATTAGATACCCTTTT----CCTAGTTC--CTGGGTCATGTAATCAGTGATTTTCAA-ATCAACCCC--G-GG--AATAGTGGATG----GA--TTG-GAAAGCAT---TAT-TTAAG-----ATTTAATTAAAGCACATGTAAAACAACAATTAA-AATATAATATTA-TGATAATATGC--ATTTCA-TGAAC
gi|10 : ACCATT---CTA--TG------TA----TTTAAAAAAAAAA-ATTA-AGGATTGTAATT-GACATTAAACAATATGTCC-----------ATCTCTC---C-ATCG-AGGATTGG-----TAT--AAGCAATTTac
gi|11 : cgACCATT---CTA--TGAACATGTA----T---AAAAAAAA-----------------TT-GGCATTAAACAATATGCCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGAtt
gi|12 : gACCATT---CTA--TG------TACATGT---ATGGAAAAA-A------------AATT-GGCATTAAACGATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-
gi|13 : cc-----------------GAGAGAGACA-GAG---GGG-GGAGGGGAGAGGGGTGTCA-CATCAGCACAATTT-CCATTAGGATTAGAAGCATGTGCAC
gi|14 : AGAGAGA-GAG---AGA-G-AGAGA---GAGAT-TGAGCTTGAGCTTCATTTACCTTTAGAATT
gi|15 : AGAGAGA-GAG---AGA-G-AGAGA---GAGATGTAA-CATCA
gi|2 : CCATT---TTA--TG------TA----T---AAAAAAAAC-ATTA--GGATTGTAATT-GACATTAGATAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----AAT--GA-CAACTT-TANNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGAGAGA-TAG---AGA-G-AGAGA---GATGTGTCA-CATCAGCTCAGTTT-CCATTAGGATTAGAAGCATGCGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTCATATATGCGATTTT---ATTTTC--TTAAT-AAAAA-AAATAT------GAAAC---GAAT--------AAGTAATACTACC-----TTTA-AAGACT--CTAATTGTTTTTTTT--AAAA-GCA-TGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCTGTGATTTTCAA-ATCAACCCC--G-GG--AATAACAGATG----GA--TTG-GTAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAatattcatagtcattccctt
gi|3 : gTTT--ATA-GCGATTTTTCCATTTTTCTTTAATTACACATACATATATTTTGGAGAGTCGGAATAAGTATGTAATTACTACAACCGAAATTTTGGAAGACTTCCT-AGTG-TCTGTTT--GAAAAGCAATGTG--A---AAATAGTATTAGATA------TAAGACTAAGCTC--TT---TCATGTAATCAGTGATTTTCAATATAAACCCCTTGCGGTTAATAGCGGTCGGGCTGA--TTGTGAGAGTAT---TATATTAGAAACGTTTTTA---AAAGCACATATCAAACACAAAGT-ACAAT----TAGTACT--TGATATGCCTATCTCA--GAAcatcttttaacatttcaaatataa
gi|4 : --ATATGCGATTTT---ATTTTC--TTAAT-TAAAA-A--TAT------GAAAA---GAATATTCA---AAGTATTACTACC-----TTTA-AAGACT--CT---TG-TCTTTTTTTGAAA-GCATGTTG--ATTAAAATAGTATTAGATACCCTTT-----CCTAGTTTCTTTGGGTCATGTAATCAGTGATTTTCAA-ATAAACCCC--G-GA--AATAGCGGATC----GATTTTG-GAAAGTATTGGTAT-TTAAGT----TTTTA---AAAGCACATATAAAACGACAAT-------------ATA-TGATAATATGC--ATTTCATTGAACtgaaa
gi|5 : ATT---CTACTTG------TA----T---AAAAAAAAA--TTACAGGATTGTAATTTGGCATTAAACAATATGTCCCTCCTCATGCTAACTCCCATCCGACCG-CGGATTGGGTGACTATTCAAGTAAAATGTAGAACAAGCAC-----------------GAGAGAGAGATAAGACCAGATG-AGGGg
gi|6 : T--GAAA-GCAT-GTG--AT--AAATAGTATTAGATACCTTTTT----CCTAGTT----------------TCAGTGATTTTCAA-ATCCACCCC--G-GG--AATAGCCGATG----GA--TTG-AAAAGTAT---CA-------------TTTA---AAATCACATTTAA---AACAATT-A-----------TA-TGATAATATGC--ATTTCA-TGAAcaag
gi|7 : -----------------GAGAGAGAGA-GAG---AGA-G-AGAGA---G---TGTCA-CATCAGCTCAATTC-CCTTTAGAATTAAAAGCATGTGCACTT----CTGTATTAATGGATTATCATTGCAATGAATTC--ATATGCAATTT
gi|8 : -G-GGGGG---GGGATG------TTGGTTCAATTT-CCATTACAATTAGAGGCATGTGTAC---------TACTAATAGAATAGGACTGAAATGAATTA--ATATG-GA-------ATTTTC--TTAAT-AAAAA-
gi|9 : gGTTATCAGTGATTTGCAA-GTGAAAACC--G-GG--AACAGTGGATA----AA--TAG-GAAATAAT---TAT-TTAAT-----TTTTA---TAAGCACATATAAAACTACAATT-A-TAT----
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTTATATATTAAAAAACATTAAGAAATGTAGTTGGCA
Unaligned ( gi|17 ): ACCAATACAATATATTTCTAAAGGACCAACC
Alignments
lowQualScore : 111 111111 11111111 33333333 11111 22222 11 1 777777777777777777777777777 111 111 222222 111 11 444444 2222 1111 44444444 22222 1 11 111 1 11 11 111111 11111 111 1111 111 222222 111 55555555555555 1 11 11
lowQualScore : 111 99 999999 66666666 22222222 6 6 22222 6 55555 33 2 0 2 222222222222222222222222222 5 000 5 5 000 4 0 00 5 6 111111 99 444 11 99 000000 1111 8888 66666666 1 55555 0 33 666 0 11 8 11 333333 77777 444 5 6 1 99 6 99 4444 99 6 111 6 444444 111 0 22222222222222 0 2 33 33
lowQualScore : ... .. ...... ........ ........ . . ..... . ..... .. . . . ........................... . ... . . ... . . .. . . ...... .. ... .. .. ...... .... .... ........ . ..... . .. ... . .. . .. ...... ..... ... . . . .. . .. .... .. . ... . ...... ... . .............. . . .. ..
lowQualScore : 777 22 222222 88888888 00000000 7 7 55555 7 00000 88 5 2 0 000000000000000000000000000 7 000 0 0 000 0 4 99 7 7 555555 22 000 00 44 555555 2222 5555 22222222 2 00000 0 88 222 0 00 0 66 888888 88888 222 0 7 0 22 7 22 2222 22 7 777 7 333333 777 8 11111111111111 0 5 88 22
consensus : ACCATT---CTA--TG------TA----T---AAAAAAAAA-ATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----TAT--AAGCAACTTGTAGAACAAGCAC-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---GGGGTGTCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTC--ATATGCGATTTT---ATTTTC--TTAAT-AAAAAA-----ATAT----GAAAN---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACT--CT-ATTG-TCTTTTT--GAAA-GCATTGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAAAACAACAATT-A-AAT----TANTA-TGATAATATGC--ATTTCA-TGAAC
Reference ( family-4581 ) : ACCATT---CTA--TG------TA----T---AAAAAAAAA-ATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----TAT--AAGCAACTTGTAGAACAAGCAC-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---GGGGTGTCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTC--ATATGCGATTTT---ATTTTC--TTAAT-AAAAAA-----ATAT----GAAAN---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACT--CT-ATTG-TCTTTTT--GAAA-GCATTGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAAAACAACAATT-A-AAT----TANTA-TGATAATATGC--ATTTCA-TGAAC
gi|1 : ACCATTAATCTA--TG------TA----T---AAAAAAACCCATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TTCCGCCATCTCCC---A-ATCGGAGGATTGG-----TAT--AAGCAACTTATA-------TAT-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---AGGGTGCCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTTAGAACTGTATTAATGGAATATCATTGCAATGAGTTC--ATATGCAATTTT---ATTTTC--TTAAT-AAAAAA------TAT----GAAAC---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACC--CT-ATTG-TCTTTTT--GAAA-GCATTATGTTAT--AGATAGTATTAGATACCCTTTT----CCTAGTTC--CTGGGTCATGTAATCAGTGATTTTCAA-ATCAACCCC--G-GG--AATAGTGGATG----GA--TTG-GAAAGCAT---TAT-TTAAG-----ATTTAATTAAAGCACATGTAAAACAACAATTAA-AATATAATATTA-TGATAATATGC--ATTTCA-TGAAC
gi|10 : ACCATT---CTA--TG------TA----TTTAAAAAAAAAA-ATTA-AGGATTGTAATT-GACATTAAACAATATGTCC-----------ATCTCTC---C-ATCG-AGGATTGG-----TAT--AAGCAATTTac
gi|11 : cgACCATT---CTA--TGAACATGTA----T---AAAAAAAA-----------------TT-GGCATTAAACAATATGCCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGAtt
gi|12 : gACCATT---CTA--TG------TACATGT---ATGGAAAAA-A------------AATT-GGCATTAAACGATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-
gi|13 : cc-----------------GAGAGAGACA-GAG---GGG-GGAGGGGAGAGGGGTGTCA-CATCAGCACAATTT-CCATTAGGATTAGAAGCATGTGCAC
gi|14 : AGAGAGA-GAG---AGA-G-AGAGA---GAGAT-TGAGCTTGAGCTTCATTTACCTTTAGAATT
gi|15 : AGAGAGA-GAG---AGA-G-AGAGA---GAGATGTAA-CATCA
gi|2 : CCATT---TTA--TG------TA----T---AAAAAAAAC-ATTA--GGATTGTAATT-GACATTAGATAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----AAT--GA-CAACTT-TANNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGAGAGA-TAG---AGA-G-AGAGA---GATGTGTCA-CATCAGCTCAGTTT-CCATTAGGATTAGAAGCATGCGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTCATATATGCGATTTT---ATTTTC--TTAATAAAAAAA-----ATAT----GAAAC---GAAT--------AAGTAATACTACC-----TTTA-AAGACT--CTAATTGTTTTTTTT--AAAA-GCA-TGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCTGTGATTTTCAA-ATCAACCCC--G-GG--AATAACAGATG----GA--TTG-GTAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAatattcatagtcattccctt
gi|3 : gTTT--ATA-GCGATTTTTCCATTTTTCTTTAAT-TACACATACATATATTTTGGAGAGTCGGAATAAGTATGTAATTACTACAACCGAAATTTTGGAAGACTTCCT-AGTG-TCTGTTT--GAAAAGCAATGTG--A---AAATAGTATTAGATA------TAAGACTAAGCTC--TT---TCATGTAATCAGTGATTTTCAATATAAACCCCTTGCGGTTAATAGCGGTCGGGCTGA--TTGTGAGAGTAT---TATATTAGAAACGTTTTTA---AAAGCACATATCAAACACAAAGT-ACAAT----TAGTACT--TGATATGCCTATCTCA--GAAcatcttttaacatttcaaatataa
gi|4 : --ATATGCGATTTT---ATTTTC--TTAAT-TAAAAA------TAT----GAAAA---GAATATTCA---AAGTATTACTACC-----TTTA-AAGACT--CT---TG-TCTTTTTTTGAAA-GCATGTTG--ATTAAAATAGTATTAGATACCCTTT-----CCTAGTTTCTTTGGGTCATGTAATCAGTGATTTTCAA-ATAAACCCC--G-GA--AATAGCGGATC----GATTTTG-GAAAGTATTGGTAT-TTAAGT----TTTTA---AAAGCACATATAAAACGACAAT-------------ATA-TGATAATATGC--ATTTCATTGAACtgaaa
gi|5 : ATT---CTACTTG------TA----T---AAAAAAAAA--TTACAGGATTGTAATTTGGCATTAAACAATATGTCCCTCCTCATGCTAACTCCCATCCGACCG-CGGATTGGGTGACTATTCAAGTAAAATGTAGAACAAGCAC-----------------GAGAGAGAGATAAGACCAGATG-AGGGg
gi|6 : T--GAAA-GCAT-GTG--AT--AAATAGTATTAGATACCTTTTT----CCTAGTT----------------TCAGTGATTTTCAA-ATCCACCCC--G-GG--AATAGCCGATG----GA--TTG-AAAAGTAT---CA-------------TTTA---AAATCACATTTAA---AACAATT-A-----------TA-TGATAATATGC--ATTTCA-TGAAcaag
gi|7 : -----------------GAGAGAGAGA-GAG---AGA-G-AGAGA---G---TGTCA-CATCAGCTCAATTC-CCTTTAGAATTAAAAGCATGTGCACTT----CTGTATTAATGGATTATCATTGCAATGAATTC--ATATGCAATTT
gi|8 : -G-GGGGG---GGGATG------TTGGTTCAATTT-CCATTACAATTAGAGGCATGTGTAC---------TACTAATAGAATAGGACTGAAATGAATTA--ATATG-GA-------ATTTTC--TTAAT-AAAAA
gi|9 : gGTTATCAGTGATTTGCAA-GTGAAAACC--G-GG--AACAGTGGATA----AA--TAG-GAAATAAT---TAT-TTAAT-----TTTTA---TAAGCACATATAAAACTACAATT-A-TAT----
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTTATATATTAAAAAACATTAAGAAATGTAGTTGGCA
Unaligned ( gi|17 ): ACCAATACAATATATTTCTAAAGGACCAACC
Alignments
lowQualScore : 111 111111 11111111 33333333 11111 22222 11 1 777777777777777777777777777 111 111 222222 111 11 444444 2222 1111 44444444 22222 1 11 111 1 11 11 111111 11111 111 1111 111 222222 111 55555555555555 1 11 11
lowQualScore : 111 99 999999 66666666 22222222 6 6 22222 6 55555 33 2 0 2 222222222222222222222222222 5 000 5 5 000 4 0 00 5 6 111111 99 444 11 99 000000 1111 8888 66666666 1 55555 0 33 666 0 11 8 11 333333 77777 444 5 6 1 99 6 99 4444 99 6 111 6 444444 111 0 22222222222222 0 2 33 33
lowQualScore : ... .. ...... ........ ........ . . ..... . ..... .. . . . ........................... . ... . . ... . . .. . . ...... .. ... .. .. ...... .... .... ........ . ..... . .. ... . .. . .. ...... ..... ... . . . .. . .. .... .. . ... . ...... ... . .............. . . .. ..
lowQualScore : 777 22 222222 88888888 00000000 7 7 55555 7 00000 88 5 2 0 000000000000000000000000000 7 000 0 0 000 0 4 99 7 7 555555 22 000 00 44 555555 2222 5555 22222222 2 00000 0 88 222 0 00 0 66 888888 88888 222 0 7 0 22 7 22 2222 22 7 777 7 333333 777 8 11111111111111 0 5 88 22
consensus : ACCATT---CTA--TG------TA----T---AAAAAAAAA-ATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----TAT--AAGCAACTTGTAGAACAAGCAC-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---GGGGTGTCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTC--ATATGCGATTTT---ATTTTC--TTAAT-AAAAAA-----ATAT----GAAAN---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACT--CT-ATTG-TCTTTTT--GAAA-GCATTGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAAAACAACAATT-A-AAT----TANTA-TGATAATATGC--ATTTCA-TGAAC
Reference ( family-4581 ) : ACCATT---CTA--TG------TA----T---AAAAAAAAA-ATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----TAT--AAGCAACTTGTAGAACAAGCAC-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---GGGGTGTCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTC--ATATGCGATTTT---ATTTTC--TTAAT-AAAAAA-----ATAT----GAAAN---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACT--CT-ATTG-TCTTTTT--GAAA-GCATTGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAAAACAACAATT-A-AAT----TANTA-TGATAATATGC--ATTTCA-TGAAC
gi|1 : ACCATTAATCTA--TG------TA----T---AAAAAAACCCATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TTCCGCCATCTCCC---A-ATCGGAGGATTGG-----TAT--AAGCAACTTATA-------TAT-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---AGGGTGCCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTTAGAACTGTATTAATGGAATATCATTGCAATGAGTTC--ATATGCAATTTT---ATTTTC--TTAAT-AAAAAA------TAT----GAAAC---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACC--CT-ATTG-TCTTTTT--GAAA-GCATTATGTTAT--AGATAGTATTAGATACCCTTTT----CCTAGTTC--CTGGGTCATGTAATCAGTGATTTTCAA-ATCAACCCC--G-GG--AATAGTGGATG----GA--TTG-GAAAGCAT---TAT-TTAAG-----ATTTAATTAAAGCACATGTAAAACAACAATTAA-AATATAATATTA-TGATAATATGC--ATTTCA-TGAAC
gi|10 : ACCATT---CTA--TG------TA----TTTAAAAAAAAAA-ATTA-AGGATTGTAATT-GACATTAAACAATATGTCC-----------ATCTCTC---C-ATCG-AGGATTGG-----TAT--AAGCAATTTac
gi|11 : cgACCATT---CTA--TGAACATGTA----T---AAAAAAAA-----------------TT-GGCATTAAACAATATGCCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGAtt
gi|12 : gACCATT---CTA--TG------TACATGT---ATGGAAAAA-A------------AATT-GGCATTAAACGATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-
gi|13 : cc-----------------GAGAGAGACA-GAG---GGG-GGAGGGGAGAGGGGTGTCA-CATCAGCACAATTT-CCATTAGGATTAGAAGCATGTGCAC
gi|14 : AGAGAGA-GAG---AGA-G-AGAGA---GAGAT-TGAGCTTGAGCTTCATTTACCTTTAGAATT
gi|15 : AGAGAGA-GAG---AGA-G-AGAGA---GAGATGTAA-CATCA
gi|2 : CCATT---TTA--TG------TA----T---AAAAAAAAC-ATTA--GGATTGTAATT-GACATTAGATAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----AAT--GA-CAACTT-TANNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGAGAGA-TAG---AGA-G-AGAGA---GATGTGTCA-CATCAGCTCAGTTT-CCATTAGGATTAGAAGCATGCGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTCATATATGCGATTTT---ATTTTC--TTAATAAAAAAA-----ATAT----GAAAC---GAAT--------AAGTAATACTACC-----TTTA-AAGACT--CTAATTGTTTTTTTT--AAAA-GCA-TGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCTGTGATTTTCAA-ATCAACCCC--G-GG--AATAACAGATG----GA--TTG-GTAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAatattcatagtcattccctt
gi|3 : gTTT--ATA-GCGATTTTTCCATTTTTCTTTAAT-TACACATACATATATTTTGGAGAGTCGGAATAAGTATGTAATTACTACAACCGAAATTTTGGAAGACTTCCT-AGTG-TCTGTTT--GAAAAGCAATGTG--A---AAATAGTATTAGATA------TAAGACTAAGCTC--TT---TCATGTAATCAGTGATTTTCAATATAAACCCCTTGCGGTTAATAGCGGTCGGGCTGA--TTGTGAGAGTAT---TATATTAGAAACGTTTTTA---AAAGCACATATCAAACACAAAGT-ACAAT----TAGTACT--TGATATGCCTATCTCA--GAAcatcttttaacatttcaaatataa
gi|4 : --ATATGCGATTTT---ATTTTC--TTAAT-TAAAAA------TAT----GAAAA---GAATATTCA---AAGTATTACTACC-----TTTA-AAGACT--CT---TG-TCTTTTTTTGAAA-GCATGTTG--ATTAAAATAGTATTAGATACCCTTT-----CCTAGTTTCTTTGGGTCATGTAATCAGTGATTTTCAA-ATAAACCCC--G-GA--AATAGCGGATC----GATTTTG-GAAAGTATTGGTAT-TTAAGT----TTTTA---AAAGCACATATAAAACGACAAT-------------ATA-TGATAATATGC--ATTTCATTGAACtgaaa
gi|5 : ATT---CTACTTG------TA----T---AAAAAAAAA--TTACAGGATTGTAATTTGGCATTAAACAATATGTCCCTCCTCATGCTAACTCCCATCCGACCG-CGGATTGGGTGACTATTCAAGTAAAATGTAGAACAAGCAC-----------------GAGAGAGAGATAAGACCAGATG-AGGGg
gi|6 : T--GAAA-GCAT-GTG--AT--AAATAGTATTAGATACCTTTTT----CCTAGTT----------------TCAGTGATTTTCAA-ATCCACCCC--G-GG--AATAGCCGATG----GA--TTG-AAAAGTAT---CA-------------TTTA---AAATCACATTTAA---AACAATT-A-----------TA-TGATAATATGC--ATTTCA-TGAAcaag
gi|7 : -----------------GAGAGAGAGA-GAG---AGA-G-AGAGA---G---TGTCA-CATCAGCTCAATTC-CCTTTAGAATTAAAAGCATGTGCACTT----CTGTATTAATGGATTATCATTGCAATGAATTC--ATATGCAATTT
gi|8 : -G-GGGGG---GGGATG------TTGGTTCAATTT-CCATTACAATTAGAGGCATGTGTAC---------TACTAATAGAATAGGACTGAAATGAATTA--ATATG-GA-------ATTTTC--TTAAT-AAAAA
gi|9 : gGTTATCAGTGATTTGCAA-GTGAAAACC--G-GG--AACAGTGGATA----AA--TAG-GAAATAAT---TAT-TTAAT-----TTTTA---TAAGCACATATAAAACTACAATT-A-TAT----
blockSeqs : . CT AACATG CATGT AATTAA T C ATCCG . GTGAC TC G G NNNNNNNNNNNNNNNNNNNNNNNNNNG T ACC T G AGA G G A TT AT TCC CT AA TACATA TTTG GTCG AAGTATGT A GAAAT G TC AAT T TT A AT ATTA TAAGA TCT G T C TT C TT GGCT TT T TGG A AAACGT . TACAATTAG C G CT TT
blockSeqs : . . . TTTA ATTACA . . C . . . G . GAACAAGCAC . . . . . A . . TT . . . T A . C ATTCA C . . . AG . . . TG AT T C G . A . . . . . . . . GT . TA . G . T
blockSeqs : . . . T CATTA . . C . . . . . . . . . A . . . . . . T . . A . T . . . . . . . T AT T C . . A . . . . . . . . G . A . . . .
blockSeqs : . . . T AA . . C . . . . . . A . . . . . A . . T A . . . . C . . . . . . . . T .
blockSeqs : . . . T . . . C . . . . . . G . . . . G . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqCons : *** ATTA**** AT**** ***
originalCons : ACCATT---CTA--TG------TA----T---AAAAAAAAA-ATTA-AGGATTGTAATT-GGCATTAAACAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----TAT--AAGCAACTTGTAGAACAAGCAC-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---GGGGTGTCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTC--ATATGCGATTTT---ATTTTC--TTAAT-AAAAAA-----ATAT----GAAAN---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACT--CT-ATTG-TCTTTTT--GAAA-GCATTGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAAAACAACAATT-A-AAT----TANTA-TGATAATATGC--ATTTCA-TGAAC
finalCons : ACCATT---CTA--TG------TA----T---AAAAAAAAATTA----GGATTGTAATT-GGCATTAAACAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----TAT--AAGCAACTTGTAGAACAAGCAC-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---GGGGTGTCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTC--ATATGCGATTTT---ATTTTC--TTAAT-AAAAAA-----ATAT----GAAAN---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACT--CT-ATTG-TCTTTTT--GAAA-GCATTGTGAT----AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAAAACAACAATT-A-AAT----TANTA-TGATAATATGC--ATTTCA-TGAAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTTATATATTAAAAAACATTAAGAAATGTAGTTGGCA
Unaligned ( gi|17 ): ACCAATACAATATATTTCTAAAGGACCAACC
Alignments
lowQualScore : 111 111111 2222222222 33333333 11111 22222 11 1 777777777777777777777777777 111 111 222222 111 11 444444 2222 1111 44444444 22222 1 11 111 1 11 11 111111 11111 111 1111 111 222222 111 55555555555555 1 11 11
lowQualScore : 111 99 999999 1111111111 88888888 6 6 22222 6 55555 33 2 0 2 222222222222222222222222222 5 000 5 5 000 4 0 00 5 6 111111 99 444 11 99 000000 1111 8888 66666666 1 55555 0 33 666 0 11 8 11 333333 77777 444 5 6 1 99 6 99 4444 99 6 111 6 444444 111 0 22222222222222 0 2 33 33
lowQualScore : ... .. ...... .......... ........ . . ..... . ..... .. . . . ........................... . ... . . ... . . .. . . ...... .. ... .. .. ...... .... .... ........ . ..... . .. ... . .. . .. ...... ..... ... . . . .. . .. .... .. . ... . ...... ... . .............. . . .. ..
lowQualScore : 777 22 222222 8888888888 77777777 7 7 55555 7 00000 88 5 2 0 000000000000000000000000000 7 000 0 0 000 0 4 99 7 7 555555 22 000 00 44 555555 2222 5555 22222222 2 00000 0 88 222 0 00 0 66 888888 88888 222 0 7 0 22 7 22 2222 22 7 777 7 333333 777 8 11111111111111 0 5 88 22
consensus : ACCATT---CTA--TG------TAT----A-----AAAAAAA--ATTA--GGATTGTAATT-GGCATTAAACAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----TAT--AAGCAACTTGTAGAACAAGCAC-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---GGGGTGTCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTC--ATATGCGATTTT---ATTTTC--TTAAT-AAAAAA-----ATAT----GAAAN---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACT--CT-ATTG-TCTTTTT--GAAA-GCATTGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAAAACAACAATT-A-AAT----TANTA-TGATAATATGC--ATTTCA-TGAAC
Reference ( family-4581 ) : ACCATT---CTA--TG------TAT----A-----AAAAAAA--ATTA--GGATTGTAATT-GGCATTAAACAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----TAT--AAGCAACTTGTAGAACAAGCAC-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---GGGGTGTCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTC--ATATGCGATTTT---ATTTTC--TTAAT-AAAAAA-----ATAT----GAAAN---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACT--CT-ATTG-TCTTTTT--GAAA-GCATTGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCAGTGATTTTCAA-ATNAACCCC--G-GG--AATAGCGGATG----GA--TTG-GAAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAAAACAACAATT-A-AAT----TANTA-TGATAATATGC--ATTTCA-TGAAC
gi|1 : ACCATTAATCTA--TG------TAT----A-----AAAAAACCCATTAA-GGATTGTAATT-GGCATTAAACAATATGTCCCTC-TTCCGCCATCTCCC---A-ATCGGAGGATTGG-----TAT--AAGCAACTTATA-------TAT-----------------GAGAGAGAGA-GAG---AGA-G-AGGGG---AGGGTGCCA-CATCAGCTCAATTT-CCATTAGGATTAGAAGCATGTGCACTTAGAACTGTATTAATGGAATATCATTGCAATGAGTTC--ATATGCAATTTT---ATTTTC--TTAAT-AAAAAA------TAT----GAAAC---GAATA--CATGCAAGTATTACTACC-----TTTA-AAGACC--CT-ATTG-TCTTTTT--GAAA-GCATTATGTTAT--AGATAGTATTAGATACCCTTTT----CCTAGTTC--CTGGGTCATGTAATCAGTGATTTTCAA-ATCAACCCC--G-GG--AATAGTGGATG----GA--TTG-GAAAGCAT---TAT-TTAAG-----ATTTAATTAAAGCACATGTAAAACAACAATTAA-AATATAATATTA-TGATAATATGC--ATTTCA-TGAAC
gi|10 : ACCATT---CTA--TG------TATTTAAA-----AAAAAAA--ATTAA-GGATTGTAATT-GACATTAAACAATATGTCC-----------ATCTCTC---C-ATCG-AGGATTGG-----TAT--AAGCAATTTac
gi|11 : cgACCATT---CTA--TGAACATGTAT----A-----AAAAAAA-----------------TT-GGCATTAAACAATATGCCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGAtt
gi|12 : gACCATT---CTA--TG------TAC----ATGTATGGAAAAA--A------------AATT-GGCATTAAACGATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-
gi|13 : cc-----------------GAGAGAGACA-GAG---GGG-GGAGGGGAGAGGGGTGTCA-CATCAGCACAATTT-CCATTAGGATTAGAAGCATGTGCAC
gi|14 : AGAGAGA-GAG---AGA-G-AGAGA---GAGAT-TGAGCTTGAGCTTCATTTACCTTTAGAATT
gi|15 : AGAGAGA-GAG---AGA-G-AGAGA---GAGATGTAA-CATCA
gi|2 : CCATT---TTA--TG------TAT----A-----AAAAAAAC-ATTA--GGATTGTAATT-GACATTAGATAATATGTCCCTC-TCCCGCTATCTCCC---C-ATCG-AGGATTGG-----AAT--GA-CAACTT-TANNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGAGAGA-TAG---AGA-G-AGAGA---GATGTGTCA-CATCAGCTCAGTTT-CCATTAGGATTAGAAGCATGCGCACTT----CTGTATTAATGGAATATCATTGCAATGAATTCATATATGCGATTTT---ATTTTC--TTAATAAAAAAA-----ATAT----GAAAC---GAAT--------AAGTAATACTACC-----TTTA-AAGACT--CTAATTGTTTTTTTT--AAAA-GCA-TGTG--AT--AAATAGTATTAGATACCCTTTT----CCTAGTTC--TTGGGTCATGTAATCTGTGATTTTCAA-ATCAACCCC--G-GG--AATAACAGATG----GA--TTG-GTAAGTAT---TAT-TTAAG-----TTTTA---AAAGCACATATAatattcatagtcattccctt
gi|3 : gTTT--ATA-GCGATTTTTCCATTTTTCTTTAAT-TACACATACATATATTTTGGAGAGTCGGAATAAGTATGTAATTACTACAACCGAAATTTTGGAAGACTTCCT-AGTG-TCTGTTT--GAAAAGCAATGTG--A---AAATAGTATTAGATA------TAAGACTAAGCTC--TT---TCATGTAATCAGTGATTTTCAATATAAACCCCTTGCGGTTAATAGCGGTCGGGCTGA--TTGTGAGAGTAT---TATATTAGAAACGTTTTTA---AAAGCACATATCAAACACAAAGT-ACAAT----TAGTACT--TGATATGCCTATCTCA--GAAcatcttttaacatttcaaatataa
gi|4 : --ATATGCGATTTT---ATTTTC--TTAAT-TAAAAA------TAT----GAAAA---GAATATTCA---AAGTATTACTACC-----TTTA-AAGACT--CT---TG-TCTTTTTTTGAAA-GCATGTTG--ATTAAAATAGTATTAGATACCCTTT-----CCTAGTTTCTTTGGGTCATGTAATCAGTGATTTTCAA-ATAAACCCC--G-GA--AATAGCGGATC----GATTTTG-GAAAGTATTGGTAT-TTAAGT----TTTTA---AAAGCACATATAAAACGACAAT-------------ATA-TGATAATATGC--ATTTCATTGAACtgaaa
gi|5 : ATT---CTACTTG------TAT----A-----AAAAAAA--ATTACAGGATTGTAATTTGGCATTAAACAATATGTCCCTCCTCATGCTAACTCCCATCCGACCG-CGGATTGGGTGACTATTCAAGTAAAATGTAGAACAAGCAC-----------------GAGAGAGAGATAAGACCAGATG-AGGGg
gi|6 : T--GAAA-GCAT-GTG--AT--AAATAGTATTAGATACCTTTTT----CCTAGTT----------------TCAGTGATTTTCAA-ATCCACCCC--G-GG--AATAGCCGATG----GA--TTG-AAAAGTAT---CA-------------TTTA---AAATCACATTTAA---AACAATT-A-----------TA-TGATAATATGC--ATTTCA-TGAAcaag
gi|7 : -----------------GAGAGAGAGA-GAG---AGA-G-AGAGA---G---TGTCA-CATCAGCTCAATTC-CCTTTAGAATTAAAAGCATGTGCACTT----CTGTATTAATGGATTATCATTGCAATGAATTC--ATATGCAATTT
gi|8 : -G-GGGGG---GGGATG------TTGGTTCAATTT-CCATTACAATTAGAGGCATGTGTAC---------TACTAATAGAATAGGACTGAAATGAATTA--ATATG-GA-------ATTTTC--TTAAT-AAAAA
gi|9 : gGTTATCAGTGATTTGCAA-GTGAAAACC--G-GG--AACAGTGGATA----AA--TAG-GAAATAAT---TAT-TTAAT-----TTTTA---TAAGCACATATAAAACTACAATT-A-TAT----
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTTATATATTAAAAAACATTAAGAAATGTAGTTGGCA
Unaligned ( gi|17 ): ACCAATACAATATATTTCTAAAGGACCAACC