lowQualScore : 11111111111111111111111111111111
lowQualScore : 11111 3333333 1 111 111111111 11 3333333 22222222 222222 111 222222222 1 1 1 11 11 1 1 11 11 111 11 1111 222222 222222222 1 88888888 333333333 222 111 111111 444444444444 11 111111 111 1111111 222 111 111 11 555555 111111 11 1 22222 333333333333333333 1111 111 3333333333 11 6666666666666 222 11 00000000000000000000000000000000 111111111 11 111 33333 22222 22 1 6666666666 1 11 22222 1 444444444 11 1 1 1 1 1 2222222 22222 11 1 1 1 1 555555555 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 1 22 11111
lowQualScore : 22222 5 0000000 5 4 4 2 4 888 4 4 8 4 4 777 4 4 777 4 8 4 888888888 55 00 4444444 2 44444444 888 6 1 5 0 55 5 55 5 5 5 5 5 66 5 333333 888 555 888 5 77 555555555 6 6 8 8 0 3 0 3 2 33 33 0 3 0 11 22 6 666 55 1111 8 000000 3 777777777 0 99999999 9 3 666666666 0 111 666 999999 6 000000000000 22 666666 111 4444444 888 222 111 000 88 77 666666 7 888888 555 77 4 1 5 00 5 6 4 3 11111 111111111111111111 6 4444 6 99 5 6 111 3 3333333333 1 77 5 5 33 4444444444444 6 99 3 111 88 11 88888888888888888888888888888888 3 888888888 0 8 4 44 1 111 11111 00000 4 33 3 0000000000 3 88 33333 6 3 222222222 7 44 3 6 3 3 8 0 0 3 0 0000000 8 00000 88 3 7 3 3 5 7 333333333 8 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 6 0 3 33 44444
lowQualScore : ..... . ....... . . . . . ... . . . . . ... . . ... . . . ......... .. .. ....... . ........ ... . . . . .. . .. . . . . . .. . ...... ... ... ... . .. ......... . . . . . . . . . .. .. . . . .. .. . ... .. .... . ...... . ......... . ........ . . ......... . ... ... ...... . ............ .. ...... ... ....... ... ... ... ... .. .. ...... . ...... ... .. . . . .. . . . . ..... .................. . .... . .. . . ... . .......... . .. . . .. ............. . .. . ... .. .. ................................ . ......... . . . .. . ... ..... ..... . .. . .......... . .. ..... . . ......... . .. . . . . . . . . . ....... . ..... .. . . . . . . ......... . ....................................................................................... . . . . .. .....
lowQualScore : 66666 0 5555555 0 4 4 9 5 999 0 0 0 0 0 000 0 0 000 1 0 0 333333333 33 00 4444444 4 11111111 888 5 5 0 1 11 0 44 0 0 0 0 0 99 0 111111 888 999 999 7 99 888888888 7 2 0 0 0 2 0 2 0 88 88 0 2 0 00 77 7 555 88 0000 0 222222 2 555555555 0 00000000 8 2 222222222 8 444 888 000000 7 555555555555 77 222222 333 0000000 777 777 777 222 33 22 000000 1 333333 999 44 3 7 7 77 2 7 8 3 55555 000000000000000000 7 2222 7 22 7 7 777 2 1111111111 9 99 7 7 33 3333333333333 7 22 2 222 88 00 00000000000000000000000000000000 8 000000000 6 0 0 00 0 888 44444 00000 0 88 3 7777777777 3 33 33333 0 3 000000000 3 77 3 7 3 3 8 0 8 2 0 5555555 0 00000 33 3 3 3 3 0 3 333333333 3 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 2 88 00000
consensus : TTTTTAAA-A---A-TGTTTTTT--A--TTCA-TA-TT-TCAATTTGCCCTT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-GT----C-TTGATATAAC-AATAAA-A--C--ATTAA-------TGCA---TGTACATGTATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATAT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGT-T--GC-TATAGT---AG-A-AAT-TAG-----GGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--NTA-T-AAA--A--TCCAA-TAAA--AAT--GT--TTCC-ATTT--T---ATA--TCAAAT---T--TGG-T-AATN--TT---TGAGG--TTAT--TTCCCATAC---T-ATGTTTTAC--A---T-T-T-TTACAAC-GAT-AAATCAA-GTGTTTA-T---TGTCTTC--A-ACAT-TTT------CTC-TACATA----AT-TC--ACATTT-GTC---TGATTC------ATTTTTCTTAA--TTTTCCT-GAGA-AATGATTTGTTAC-A--AG-G-GATTATTG-AGT--ATTTTAAAATTAAATTCCGCAACCTTTTTTTTCCATA-CA--TA---TT---TT-----TTT--------------GTAAA--TTAG-TTCCCAA-GANAAT-TTATCAAT--ATT--C-AAAGTTC-----TATNAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TT--ACAA-AAA-TT-----TTATACATCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TAGGGTAA---------ATCATGAAAATTCGC-----ATGTC-TTAG----C-TTT-TAAANAA--TA--TTACT---CATAAT-----TTTATACTCGC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
Reference ( gi|2 ) : TTTTTAAA-A---A-TGTTTT----A--TTCA-TA-TT-TTAATTTGTCCTT--GCAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-GT----C-ATGATATAAC-AATAAA-G--C--ATTAA-------TGCA---TGTACATATATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CGATATGTAAC-CT--TTTATA--------TAC-CATTG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATGT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGT-T--GT-TATAGC---AA-A-AAT-TAGCTATAGGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--ATA-T-AAA--A--TCCAA-TAAG--AAT--GT--TTCT-ATTT--T---ATG--TCAAAC---T--TGG-T-AATG--TT---TGAGG--TTAT--TTCCCATATTT-T-ATGTTTTAC--A---T-T-T-TTACAAT-GAT-AAATCAA-GTATTCA-T---TGTCTTC--A-ACAT-TTT------CTC-TACATA----AT-TC--ACATTT-GTC---TGATTC------ATTGTTCTTAA--TTTTCCT-GAGA-AAAGATTTGTTAC-A-CAG-GCGATTATTG-AGT--ATTTTAAAATTAAATTCTGCAACCTTTTTTTTCCATA-CA--TA---------------TTT--------------GTAAA--TTAG-TCCCCAA-GAAAAT-TTATCAAT--ATT--T-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ATAA-AAA-TT-----ATATACATCG-TTTTCGAT-GAT-ATATCAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TATGGTAA---------ATCTTGAAAATTCAC-----ATTTC-TTAG----C-TTT-TAAAAAA--TA--TTACT---CATAAT-----TTTGAATTCGC--------ATA-----AAAT-GTTTCCTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
gi|4 : TTTTTAAA-A---AATGTTTTT---A--TTCA-TA-TT-TTAAATTGCCATT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-ACGCAC-GT----C-TT--TTT-----------G--C--AT--G-------TAC----TGTACATATATT-ACATAATTT-CA-TCA-CAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-TAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCTGTAAA-GAAGCTTTAACATGAGCAG-ATATGT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTCCTCACAA-TAGCATCTT---TATTTGT--AAA---ATCAGT-TTGGCGTATAGTGTAGA-G-AAT-TAG-----GTTTA-TCAAAATGT------CTAATTTGTTTGTTG-TTTCA--CTA-T-AAACGA---CCAA-TAAGA-AAT--GT--TTCCAAGTT--T---ATA---CAAAC---TTCTGATT-AAT---TT---TTAGG--TTAT--TT-TCATATTCAT-ATG-TTTAC--AATTT-T-T-TTA-AAT-GATAAAATCAA-GT-TTTATT---TGTCTTCCAA-ATAT-TTT------TT
gi|1 : tTTTTTATA-A---A-TGTTTTTT--A--TTCAATA-TT-TCAATTTGCCCTT---CAA-T-GTAT-CA-A---G-A-CAC---TCGGAGTGCATAGT----CTATGAGATAAA-AATAAA-A--C--ATTAAATAAAGGCGCAATGTATACATCTAT--ACATAATTT-CATTCAGCAAT-GCA-TAA-CTGCA-TCTTATTTCGACACATCAAGAAATTTTCTAT-G-CAT-TTATATGTAAC-TT--T---TA--------TAC-CAt
gi|13 : ttTTTTTAAT-C---G-TTTCTT----AATTTCA-TA-TT-T--ATTTGCCCTT--ACAAAT-GT-TTCA-A---GTA-CAC---TCAGTGCGCAT-GT----C-TTGATA--AC-ACTACA----T--ATTAA--------GCA---GG---ACATATC-A-ATA--TT-CA-TGA-TAAT--CA-TTA-CTG-AATTT--TTTCGA-AC-T------ATTAT---TTGAAGTTCTATATGTAAC-CT--TTTATactgcacgcaattctattcgacccatgtaatatagccttttctgtgaggagtaattcttactctcactatcttaggcagtatttgcgggcaaatattctatcatcatagcttagtgctactataaaatagctcacgcttatgtaagacagaatgttaaagttactttgtgtgctaaaacttgttctaatttgactctttttggttgtttgaactataaaacatccaaataaagcaattgttccgttttcatatgattcaaacattttggttaatgttgtgtgagagtttataatatccatagatgttttaccattgtgttacatgataaatcagtgttttatcgatgtcttcatacagtgtggtgtactctacatataatatatcacattttgtctgattctcttttcttaaatttttcctgaaaagagatttgttcaatacgtcagtgtggtattttgaaattaaatctgtaactttttttttatagcatatttttaattttggtttttgtaaattttagatctccaagaaaaatgttcaatatttatgttcttccttacaaaacggattggtatatatggggtttaatgaaatttctttttctaacaacaaatttttatcacgttttcgatggataatatcagcttttttcaataggatttgtctctcattagatggagaatgatttatttaaatacattga
gi|19 : tTTTTTAAA-T---A-TGTTTTTT--A--TTCA-TA-TT-TGA--TTGCCCTTT-ACAA-T-GT-T-CA-C---G-ATCAC---TC-G-GCGCAT-GTTCTCT-AT--TCTAACAAATAAA----C--ATTAg
gi|5 : TTTAAATA---A-TGTTTT----T--ATCA-TA-TT-T-AATTTGCCCTT--A-AA-T-GT-T-CA-A---G-A-CAC------------AT-GT----C-TTGATACAA---ATAAACA--T--ATTAA-------TGCA---TGTACATATATC-ACATAATT--CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--GTTCGA-ACAT------ATTAT---T-GAATT-CTAT-TGTAAC-CT--TTTAT---------TAC-CAATG-A----TATCATTTAA-GA-GCTTTAACATGAGCAG-A-ATAT--TT--TCGGTACTTTCCT-CA-CGTCCTT-GATTC--TACAA--A-CATCTT---TATTTGT--AAAT--AACAGT-T--GC-TATAGT---AG-A-AAT-TAG------GTTAATCAAAATAT------AT-ATTTTTTGGTTGTTTTAC--ATA---AAA--A--TCCAA-TAAA--AATATGT--TTCC-ATTT--T---ATA--TCAAAT---T--TGG-T-AATT--TT---TGAGG--TTAT--TTCCCATA----C-ATGTTTTACATA---T-T-T-TTACAAT-GAT-AAAt
gi|6 : TTCAAA-ATTTA-TGTTTTCTTAA--TTCA-TAATTGTCAGTTTGCCGTTTAACAA-TCGTGT-CA-AAAGG-A-CATACATCTG-GAACAT-GT----C--TTATATAAC-AATAAA-A--CT-ATCAAA------GGCA---TG-ACATGTATCGACATAATTTTCC-TC--TAAGAGCAATTAACTG-A-TTT--TTTCGA-ACATTAT---GTTAT---T-GAAAT--AATATG-AACGCTAGTTCATAACATGCTATACTCAATGCAGCTACATCCTTAAAAGAAGCTTCAACATGAGCAGCATGTATAATTTGTTGGTATTTTCTTCCAATGTCCTTGGATTC--TGCAATTA-CATCTTAATTATTTGTG-AAATGGAACAGT-T--G
gi|10 : TAAA-A---G-GGTTTT----A--TTCA-TA-TT-TCAATTTGCCCTT--ATAA-T-GT-T-CTTA---G-A-CAC---TCGG-GTGCAT-GT----C-TTGATA--AC-AATAAA-AAAT--ATGAA-------TGCA---TGTATATGTATC-ACATAA----CA-TCA-TAAT-GCA-TTA-CTG-A-TGT--TTTCTA-ACAT------ATTAT---T-AAAAT-CTATATGTAAC-CT--TTTATG--------TAC-AAGTG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGTAG-ATATAT--TT--TTGGCACTTTCTT-CAATGTCCTT-GATTC--TGCAA-CA-CATCTTA--TATTTGA--AAAT--cctattagtagaga
gi|20 : ---A-TGTTTT----A--TTCG-TA-TT-TCAATTTGTCCTT--ACAA-T-GT-T-CA-A---G-A-TAC---TCGG-GCGCAT-GT----C-TTAATA
gi|16 : tttt-TT-TCAGTTTGCCTTT--ACAA-T-GT-T-CA-A---G-A-CAC---TCTG-GCACAT-GT----C-TT--TATAAC-AATAAA-A--CATATCAA-------AGCA---TGAACATGTATC-ACATAATTT-CC-TCA-TAAA-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-
gi|21 : TTGCCCTT--ACAA-T-GT-T-CA-C---G-A-CAC---TCGG-GCGCAT-GT----C-TTGATCTAACAAATAAACA--T--ATTAA-------
gi|17 : A-------TGCA---TGTACATGTATC-ACATAATTT-CA-TCT-TAAT-GCA-TTA-CTG-A-TTT--TTTCTA-ACAT------ATTAT---T-G--AT-CTATATGTAAC-CT--TTTATA--------TAC-AAGTG-AG-TACATCCTTAAc
gi|8 : ATTA--TACAG-AA-CATTTTA--TATTTGT--AGAT-------TCT--GC--AT-GC---AACATAATATA---ATAAATTATTCAAAA-GTAAAATACC-ACTTTGTTGTTATTTTCA---TAGT-AGA--A--ACCCA-CAAC--TAT--GTGCTTCC-ATTG--A---ATT--TCAAAG---T--TTA-A-AATAGATT---CTAG----TGT--TTTCCAAATTT-TCATA----AC--A---T-T-T-ATACATTCGA--AAATTAA-ATGCTTA-G---AGTTTTC--G-A--T-TTT------ATC-CAAACA----AT-TGGAACATTT-GGG---GGATGC------AT-GTT-TCCA--TTTGCTTAGAGATAAA------TTAC-AACAGAGCAA--ATTC-AGA--AGTTTAAAATTAAATTCCGCAA
gi|11 : AG-TA-CATCTTA--TATTTGTTTAAAT--AACAGT-T--GC-TATAGT---AG-A-AAT-TAA------GCTGTTCAAAATGA------CA-ATTCTCTGGTTGTTTTCATGATA-TGAAA--A--TTTAA-TTA--------------CC-ATTTGAT---ATG--TCAA-T---T--TGA-T-AAGC--TT---TGATG--TTATATTTCCCATAC-----ATACTTTAC--A---T-T-T----CAAC-CA-------AA-GTATTTA---------------------------------------A----AA-TC--A-AGTT-ATC---TGATTC------GGTTTTCTTTG--TTTTCCT-GAGA-AATAATTTGTGAC-A-ttg
gi|1 : TTTTTGGTTGTTTGAA--CTA-T-AAA--ACATCCAAATAAAGCAAT--TG--TTCC-GTTT--TCATATGATTCAAACATTT--TGG-TTAATG--TTGTGTGAGAGTTTATAATATCCATAG-----ATGTTTTACC-A---T-TGTGTTACA-T-GAT-AAATCAGTGT-TTTA-TCGATGTCTTC--ATACAG-TGTGGTGTACTC-TACATATAATATATC--ACATTTTGTC---TGATTC------TCTTTTCTTAAATTTTTCCT-GAAA-AGAGATTTGTT-C-A--AT-ACG-TCAGTGTGGT--ATTTTGAAATTAAA-TCTGTAACTTTTTTTTT--ATAGCA--TATTTTTAATTTTGGTTTTT--------------GTAAATTTTAGATCTCCAA-GAAAAA-TGTTCAAT--ATT--T--ATGTTCTTCCTTACAAAAC-GGATTGGT-ATA------TATGGGGTTTAATGA--AATTTCTTTT-TCTAACAACAAATTT-----TTAT-CA-CG-TTTTCGATGGATAATATCAGCTTTTTTCAATAGGA-TTTGTCTCTCATTAGATGGAGAATGATTTgaaaatatcactgataaagttgattc
gi|9 : tttttttataaatgttttttattcaatatttcaatttgcccttcaatgtatcaagacactcggagtgcatagtctatgagataaaaataaaacattaaataaaggcgcaatgtatacatctatacataatttcattcagcaatgcataactgcatcttatttcgacacatcaagaaattttctatgcatttatatgtaacttttataccaactgcacgcaattctattcgacccatgtaatatagccttttctgtgaggagtaattcttactctcactatcttaggcagtatttgcgggcaaatattctatcatcatagcttagtgctactataaaatagctcacgcttatgtaagacagaatgttaaagttactttgtgtgctaaaacttgttctaatttgactcCCAA-TAAA--AATATGT--TTCC-ATTT--T---ATA--TCAAAT---T--TGG-T-AATT--TT---TGAGG--TTAT--T-CCCATAC-----ATGTTTTAC--A---TAT-T-TTAACAT-GAT-AAAT--A-ATGTTCA-T---TGTCCTC--A-ATAG-TTT------CTC-TACATA----AT-TC--ACATTT-GTC---TGATTC------ATTTTTCTTAA--TTTTCCT-GAGA-AATGATTTGTTACTA-GTG-GAGATTATTG-AGT--ATTTTAAAATTAAATCCTGCAACCTTTTTT---CATA-CA--TA---------------TTTACAATTTTGTTTTTGTAAA--T-AG-TTTTCCA-GCCAATCTTATCAATTTATT--T-AAAGTTC-----Tatttaaatacattga
gi|12 : TGTTTCAC--T---T-G-T-TCAAAAC-AAT-AAATCAA-GTGTTTA-T---TGCCTCC--A-CCATATTT------CTTATACACA----AT-TC--ACACAT-GCC---TGAGTCGGCCGGATT-TTCTGTA--TTTTCCC-GAGA-AGGATTTTGTTAC-------------ATTG-AGTAAAGTTTGAATTTAAATCCTGCAAC---------CCAT--CT--TA---------------TCT--------------G-AAA--TGAA-CTCC--A-GAGGA--TTATTATC--ATT--CAAAAGTTC-----TTTTATA--GAA
gi|3 : -TTT------CTC-TACATA----AT-TC--ACA-TT-GTCCTTTGAT------------TTCTTAA--TTTT-CT-GAG--AATTATTTGGTAC-A--AG---GA--ATTG-AAT--ATTT--GAATTAAATTCTGCA--CCTTTTTTTCAATA-CATTTACAATTTGGTT-----TTT--------------GTAAA--TTGG-T-CTCAA-GAAAAT-CTATCAAT---TT-----AAGTTC-----TATAAAA--GGATTGGTGATAGAAAGCG---GGGTTT-ATGACGATTTTCTTTTGTT--ACAA-AAA-CTTGCTAATACAC-TCGATTTTC-AT-GAT-ATAAAAA-CGATC---AT-AAA---A---TTTCA-TAGATG-----TGATTTCAAAACTGAGTTTTCCATA-CGC-AGTGTTGGA-TAGGAT-A---------ATCATGAAAATTCACGATGTATGTCTTTCG----CTTTT-TAAACAA--TAGGTTACT---C-TAAT-----ATTGTACTCGCGACTTTTGGTA-----CTTT-GTTTCTTT-TTCTTCTAAGAG-TTAT-TG--CAAAATC
gi|18 : C------ATTTTTCTTAA--TTTTCCT-GAGA-AATGATCTGTTAC-A-TAG-GATATTATTG-AGT--ATCTTAAAATTAAATTCCGCAACCTTTTTTTT-CATA-CA--TA---------------TTT--------------ACAActtcaaagtattatacacaataacaaattacatatctgaa
gi|7 : CCAATGATAAT-TTCTCTAC--ATTGTC-ATACTAC-----TATTAAAAAGGATTGGT-ATA------T---GGGTTT-ATGC--AATTTCTTTT-TT--ACAA-AAA-TT-----TCATACATCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGATTTT---TTTCA-TCGATA-----TGATTTCAAAATTGAGCTT--CATA-CGCAAGT-TTTGA-TAGGGTAA---------ATCATGAAAATT--C-----ATGTC-TTAG----C-TTT-TTGATAA--TA--TTACT---CATAAT-----TTTATACTCGC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCAt
gi|22 : ATAAG-TCATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTttcaataggtttaataccattttcatccactatatcaaattcatctcaaataaagtttgt
gi|14 : T---TTCCA-TAGATG-----T-ATTTCAAAATTGAGTTT--TATAGCTCAAGT-TTTGACTAGGGTAAAGTGCTGTGATTTTAGAAATACGC------------TAGAACAC-TGCATAAAATATGTA--TTATTGCACACAATCACACTCTA---TCAC--------AC------AAAT-ATTTCTTTGTTTCTCT-ATA--TTGT-AG--TAAAACTA
gi|15 : TCGC--------ATATACAAAAATTGTTTCTTT-ATCTTCTAAGATCTCATACGAATAAAACCA
Alignments
lowQualScore : 1111111 1111 2222222 22222222 111 222222 222222222 11 11 111 11 11 11 444444 222222222 111 111111 1111111 1111 111 111 11111 44444 1111 111111 11111 111111111 111111 1111 111 1111111 4444444444444444 111 8888888888888888888 111 11 22222 11111 11 1 4444444444 1 11 1 11 1 22222 1 11 1 1 1 111 11111 11 1 1 1 111 222222 2222222 1 2222222222 1 11 111 111 111111 3333333333333333 11 11
lowQualScore : 1111111 5 6666 66 4 4 4 5 3 55 3 3 7 3 3 666 3 3 666 2 7 3 3 3 7 3 4 4 1111111 3 00000000 222 4 3 4 4 4 4 4 4 4 4 4 66 4 000000 777 4 3 5 0 5 66 000000000 5 6 6 8 0 8 0 11 11 8 0 8 99 99 5 222 33 55 99 6 55 6 99 6 000000 6 0 555555555 000 6 222222 55 9999999 77 77 5 8888 2222 777 666 888 000 0 00000 77 33 11111 5 0000 444444 5 5 55 2 55 88 3 1 5 77777 777777777 444444 5 2222 5 77 3 5 000 1 5555555 00 66 3 5 3333333333333333 5 77 1 1 333 6 0000000000000000000 1 0 111 9 6 6 1 00 99 55555 66666 1 99 0 3333333333 0 33 0 33 0 11111 0 33 0 2 0 0 0 8 0 8 88 111 6 66666 33 0 3 0 0 3 777 1 888888 7777777 3 2 0 3333333333 1 0 11 444 0 77 444 555555 6666666666666666 8 8 0 99 8 11
lowQualScore : ....... . .... .. . . . . . .. . . . . . ... . . ... . . . . . . . . . ....... . ........ ... . . . . . . . . . . . .. . ...... ... . . . . . .. ......... . . . . . . . .. .. . . . .. .. . ... .. .. .. . .. . .. . ...... . . ......... ... . ...... .. ....... .. .. . .... .... ... ... ... ... . ..... .. .. ..... . .... ...... . . .. . .. .. . . . ..... ......... ...... . .... . .. . . ... . ....... .. .. . . ................ . .. . . ... . ................... . . ... . . . . .. .. ..... ..... . .. . .......... . .. . .. . ..... . .. . . . . . . . . .. ... . ..... .. . . . . . ... . ...... ....... . . . .......... . . .. ... . .. ... ...... ................ . . . .. . ..
lowQualScore : 9999999 0 9999 11 4 0 0 7 6 00 6 6 3 6 6 444 6 6 444 8 3 6 6 6 4 6 7 0 7777777 6 77777777 222 8 7 4 4 4 4 4 4 4 4 4 11 4 666666 888 4 2 0 1 0 99 999999999 7 7 7 0 8 0 8 00 00 0 8 0 22 66 7 999 66 77 22 7 88 7 22 7 000000 0 8 222222222 222 7 888888 99 6666666 99 99 7 3333 1111 999 111 999 000 7 11111 99 44 33333 0 6666 999999 0 0 44 5 44 22 0 7 7 11111 444444444 444444 7 1111 7 99 6 7 000 4 4444444 66 99 6 0 9999999999999999 7 99 4 0 000 7 8888888888888888888 0 8 888 0 7 7 0 22 22 33333 77777 0 00 0 2222222222 0 88 0 88 0 88888 0 22 0 5 0 0 6 0 8 0 88 777 7 77777 88 0 2 0 0 2 555 2 888888 8888888 2 5 0 0000000000 0 0 00 000 8 00 000 000000 0000000000000000 0 0 8 00 0 00
consensus : TTTTTAAA-A---A-T-GTTTTTT--A--TTCA-TA-TT-TCAATTTGCCC-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TATAAC-AATAAA-A--C--ATTA-A-------TGCA---TGTACATGTATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATAT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTAG-----GGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--NTAT-AAA--A--TCCAA-TAA-A--A--AT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--NTT---TGAGG--T--TAT--TTCCCATA--C--ATGT-TTT----AC--A---T-T-T-TTACA-ACGAT-AAATCAAGTGTTT-A-T---TGTCTTC--A-ACAT-TTT------CTC-TACATA----AT-T--CACATTT-GTC---TGATTCGT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTACA-A---GG-G-ATT--ATTG-AGT--ATTTTAAAATTAAATTCCGCAACCTTTTTTTTCCATA-CAT-----ATTT----------TTTTTGTAAA--TTAGTTC-CCAA-GANAAT-TTATCAA--TATT--T-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ACAA-AAATTT--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCGTGA------AAATTC-----GCATGTC-TTAG----C-TT--TTAAATA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
Reference ( family-4547 ) : TTTTTAAA-A---A-T-GTTTTTT--A--TTCA-TA-TT-TCAATTTGCCC-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TATAAC-AATAAA-A--C--ATTA-A-------TGCA---TGTACATGTATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATAT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTAG-----GGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--NTAT-AAA--A--TCCAA-TAA-A--A--AT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--NTT---TGAGG--T--TAT--TTCCCATA--CT-ATGT-TTT----AC--A---T-T-T-TTACA-ACGAT-AAATCAAGTGTTT-A-T---TGTCTTC--A-ACAT-TTT------CTC-TACATA----AT-T--CACATTT-GTC---TGATTCAT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTACA-A---GG-G-ATT--ATTG-AGT--ATTTTAAAATTAAATTCCGCAACCTTTTTTTTCCATA-CAT-----ATT-----------TTTTTGTAAA--TTAGTTC-CCAA-GANAAT-TTATCAA--TATT--C-AAAGTTC-----TATNAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TT--ACAA-AAATTT--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCATGA------AAATTC-----GCATGTC-TTAG----C-TT--TTAAANA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
gi|1 : TTTTTATA-A---A-T-GTTTTTT--A--TTCAATA-TT-TCAATTTGCCC-TT---CAA-T-GTAT-CA-A---G-A-CAC---TCGGAGTGCATAG-TCTATGA-GATAAA-AATAAA-A--C--ATTA-AATAAAGGCGCAATGTATACATCTAT--ACATAATTT-CATTCAGCAAT-GCA-TAA-CTGCA-TCTTATTTCGACACATCAAGAAATTTTCTAT-G-CAT-TTATATGTAAC-TT--T---TA--------TAC-CAA
gi|1 : ttTTTTTGGTTGTTTGAA--CTAT-AAA--ACATCCAAATAA-AGCA--AT--TG--TTCC-GTTT--TCATATGATTCAAACATTTTGG-TTAAT--GTTGTGTGAGAGTT--TATAATATCCATA--G--ATGT-TTT----ACC-A---T-TGTGTTACA--TGAT-AAATCA-GTGTTTTA-TCGATGTCTTC--ATACAG-TGTGGTGTACTC-TACATATAATATAT--CACATTTTGTC---TGATTCTC-----TTTTCTTAAATTTTTCCTGAAAAGAGA-TTTGTT-CA-A---TA-C-GTC--AGTGTGGT--ATTTTGAAATTAAA-TCTGTAACTTTTTTTTT--ATAGCAT-----ATTTTTAATTTTGGTTTTTGTAAATTTTAGATCTCCAA-GAAAAA-TGTTCAA--TATT--T--ATGTTCTTCCTTACAAAAC-GGATTGGT-ATA------TATGGGGTTTAATGA--AATTTCTTTT-TCTAACAACAAATTT--T--TATCA--CG-TTTTCGATGGATAATATCAGCTTTTTTCAATAGGA-TTTGTCTCTCATTAGATGGAGAATGATTTctgcacgcaattctattcgacccatgtaatatagccttttctgtgaggagtaattcttactctcactatcttaggcagtatttgcgggcaaatattctatcatcatagcttagtgctactataaaatagctcacgcttatgtaagacagaatgttaaagttactttgtgtgctaaaacttgttctaatttgactctttttggttgtttgaactataaaacatccaaataaagcaattgttccgttttcatatgattcaaacattttggttaatgttgtgtgagagtttataatatccatagatgttttaccattgtgttacatgataaatcagtgttttatcgatgtcttcatacagtgtggtgtactctacatataatatatcacattttgtctgattctcttttcttaaatttttcctgaaaagagatttgttcaatacgtcagtgtggtattttgaaattaaatctgtaactttttttttatagcatatttttaattttggtttttgtaaattttagatctccaagaaaaatgttcaatatttatgttcttccttacaaaacggattggtatatatggggtttaatgaaatttctttttctaacaacaaatttttatcacgttttcgatggataatatcagcttttttcaataggatttgtctctcattagatggagaatgatttatttaaatacattga
gi|10 : tttttttataaatgttttttattcaatatttcaatttgcccttcaatgtatcaagacactcggagtgcatagtctatgagataaaaataaaacattaaataaaggcgcaatgtatacatctatacataatttcattcagcaatgcataactgcatcttatttcgacacatcaagaaattttctatgcatttatatgtaacttttataccaactgcacgcaattctattcgacccatgtaatatagccttttctgtgaggagtaattcttactctcactatcttaggcagtatttgcgggcaaatattctatcatcatagcttagtgctactataaaatagctcacgcttatgtaagacagaatgttaaagttactttgtgtgctaaaacttgttctaatttgactcTAAA-A---G-G-GTTTT----A--TTCA-TA-TT-TCAATTTGCCC-TT--ATAA-T-GT-T-CTTA---G-A-CAC---TCGG-GTGCAT-G-TCT-TGA-TA--AC-AATAAA-AAAT--ATGA-A-------TGCA---TGTATATGTATC-ACATAA----CA-TCA-TAAT-GCA-TTA-CTG-A-TGT--TTTCTA-ACAT------ATTAT---T-AAAAT-CTATATGTAAC-CT--TTTATG--------TAC-AAGTG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGTAG-ATATAT--TT--TTGGCACTTTCTT-CAATGTCCTT-GATTC--TGCAA-CA-CATCTTA--TATTTGA--AAAT--atttaaatacattga
gi|11 : AG-TA-CATCTTA--TATTTGTTTAAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTA------AGCTGTTCAAAATGA------CA-ATTCTCTGGTTGTTTTCATGATATGAAA--A--TTTAA----------------T--TACC-ATTTGAT-ATGT----C-AA---TTTGA-T-AAG--CTT---TGATG--TTATAT--TTCCCATA--C--ATAC-TTT----AC--A---T-T-T----CA-ACCA-------AAGTATTT-A---------------------------------------A----AA-T--CA-AGTT-ATC---TGATTCGG-----TTTTCTTTG--TTTTCCTGAGAAATAA-TTTGTGACA-
gi|12 : TGT-TTC----AC--T---T-G-T-TCAAA-ACAAT-AAATCAAGTGTTT-A-T---TGCCTCC--A-CCATATTT------CTTATACACA----AT-T--CACACAT-GCC---TGAGTCGGCCGGATTTTCTGTA--TTTTCCCGAGAAG-GATTTTGTTAC----------------ATTG-AGTAAAGTTTGAATTTAAATCCTGCAAC---------CCAT-----------CT-----------TATCTG-AAA--TGAACTC-C--A-GAGGA--TTATTAT--CATT--CAAAAGTTC-----TTTTATA--GAAgaaaatatcactgataaagttgattc
gi|13 : TTTTTAA--------TCGTTTCTT--AATTTCA-TA-TT-T--ATTTGCCC-TT--ACAAAT-GT-TTCA-A---GTA-CAC---TCAGTGCGCAT-G-TCT-TGA-TA--AC-ACTACA----T--ATTA-A--------GCA---GG-ACAT--ATC-A-ATA--TT-CA-TGA-TAAT--CA-TTA-CTG-AATTT--TTTCGA-AC-T------ATTAT---TTGAAGTTCTATATGTAAC-CT--TTTAT
gi|14 : tT---TTCCA-TAGATG-----T-ATTTCAAAATTGAGTTT--TATAGCTCAAGT-TTTGACTAGGGTAAAGTGCTGTGATTTTAGAAATAC-----GC-------TAGAACAC-TGCATAAAATATGTA--TTATTGCACACAA--TCA---CACT---CTATC--------ACAC----AAAT-ATTTCTTTGTTTCTCT-ATA--TTGT-AG--TAAAACTAg
gi|15 : A--TTTCT---CATACATCTAGCTTACTTGTC--GC--------ATATACAAAAATTGTTTCTTT-ATCTTCTAAGATCTCATACGAATAAAACCA
gi|16 : -TT-TCAGTTTGCCT-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCTG-GCACAT-G-TCT-T---TATAAC-AATAAA-A--CATATCA-A-------AGCA---TGAACATGTATC-ACATAATTT-CC-TCA-TAAA-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-ttcaatacggttttacatctctaccatttttcatccacaatattccaactaacataattcaaaaaccagctcgt
gi|17 : -A-------TGCA---TGTACATGTATC-ACATAATTT-CA-TCT-TAAT-GCA-TTA-CTG-A-TTT--TTTCTA-ACAT------ATTAT---T-G--AT-CTATATGTAAC-CT--TTTATA--------TAC-AAGTG-AG-TACATCCTTAA
gi|18 : CAT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TCTGTTACATA---GG-ATATT--ATTG-AGT--ATCTTAAAATTAAATTCCGCAACCTTTTTTTT-CATA-CAT-----ATT-----------T
gi|19 : TTTTTAAA-T---A-T-GTTTTTT--A--TTCA-TA-TT-TGA--TTGCCCTTT--ACAA-T-GT-T-CA-C---G-ATCAC---TC-G-GCGCAT-GTTCT-CTATTCTAAC-AAATAA-A--C--ATTA-acaat
gi|2 : TTTTTAAA-A---A-T-GTTTT----A--TTCA-TA-TT-TTAATTTGTCC-TT--GCAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCA-TGA-TATAAC-AATAAA-G--C--ATTA-A-------TGCA---TGTACATATATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CGATATGTAAC-CT--TTTATA--------TAC-CATTG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATGT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-T--TA-TA--GCAAA-AATTAGCTATAGGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--ATAT-AAA--A--TCCAA-TAA-G--A--AT--GT--TTCT-ATTT--T-ATGT----CAAA---CTTGG-T-AAT--GTT---TGAGG--T--TAT--TTCCCATATTTT-ATGT-TTT----AC--A---T-T-T-TTACA-ATGAT-AAATCAAGTATTC-A-T---TGTCTTC--A-ACAT-TTT------CTC-TACATA----AT-T--CACATTT-GTC---TGATTCAT-----TGTTCTTAA--TTTTCCTGAGAAAAGA-TTTGTTACACA---GGCG-ATT--ATTG-AGT--ATTTTAAAATTAAATTCTGCAACCTTTTTTTTCCATA-CAT-----A---------------TTTGTAAA--TTAGTCC-CCAA-GAAAAT-TTATCAA--TATT--T-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ATAA-AAATTA--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATCAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TATGGTAAA---TCTTGA------AAATTC-----ACATTTC-TTAG----C-TT--TTAAAAA-ATA--TTACT---CATAATTTTG---AATT---C--GC--------ATA-----AAAT-GTTTCCTT-TTCTTCTAAGA--TTAT-CG--TAAAACCAt
gi|20 : TTTT--A--TTCG-TA-TT-TCAATTTGTCC-TT--ACAA-T-GT-T-CA-A---G-A-TAC---TCGG-GCGCAT-G-TCT-TAA-TA
gi|21 : ttttatgTTGCCC-TT--ACAA-T-GT-T-CA-C---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TCTAACAAATAAACA--T--ATTA-A-------
gi|22 : ATAAG-TCATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTc
gi|3 : -TTT------CTC-TACATA----AT-T--CACA-TT-GTCCTTTGA-----------TTTCTTAA--TTTT-CTGAG-AATTA-TTTGGTACA-A---GG-A------ATTG-AAT--ATTT--GAATTAAATTCTGCA--CCTTTTTTTCAATA-CATTTACAATTTGG--------TTTTTGTAAA--TTGG-TC-TCAA-GAAAAT-CTATCAA--T-TT-----AAGTTC-----TATAAAA--GGATTGGTGATAGAAAGCG---GGGTTT-ATGACGATTTTCTTTTGTT--ACAA-AAACTTGCTAATA-CACTCGATTTTC-AT-GAT-ATAAAAA-CGATC---AT-AAA---A---TTTCA-TAGATG-----TGATTTCAAAACTGAGTTTTCCATA-CGC-AGTGTTGGA-TAGGAT-AA---TCATGA------AAATTCACGATGTATGTCTTTCG----CTTT--TTAAACA-ATAGGTTACT---C-TAATATTG---TACT---C--GCGACTTTTGGTA-----CTTT-GTTTCTTT-TTCTTCTAAGAG-TTAT-TG--CAAAATC
gi|4 : TTTTTAAA-A---AAT-GTTTTT---A--TTCA-TA-TT-TTAAATTGCCA-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-ACGCAC-G-TCT-T------------T-----------TTGCA-------TGTAC--TGTACATATATT-ACATAATTT-CA-TCA-CAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-TAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCTGTAAA-GAAGCTTTAACATGAGCAG-ATATGT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTCCTCACAA-TAGCATCTT---TATTTGT--AAA---ATCAGTTTGG-CG-TA-TAGTGTAGAGAATTAG-----GTTTA-TCAAAATGT------CTAATTTGTTTGTTG-TTTCA--CTAT-AAACGA---CCAA-TAAGA--A--AT--GT--TTCCAAGTT--T-ATA-----CAAACT-TCTGATT-AAT--TTT---T-AGG--T--TAT--TT-TCATA--TTCATATGTTT----AC--AATTT-T-T-TTA-A-ATGATAAAATCAAGT-TTT-ATT---TGTCTTCCAA-ATAT-TTT------TTcttcaaagtattatacacaataacaaattacatatctgaa
gi|5 : tTTTAAATA---A-T-GTTTTT---A--T-CA-TA-TT-T-AATTTGCCC-TT--A-AA-T-GT-T-CA-A---G-A-CAC------------AT-G-TCT-TGA-TACAA---ATAAACA--T--ATTA-A-------TGCA---TGTACATATATC-ACATAATT--CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--GTTCGA-ACAT------ATTAT---T-GAATT-CTAT-TGTAAC-CT--TTTAT---------TAC-CAATG-A----TATCATTTAA-GA-GCTTTAACATGAGCAG-A-ATAT--TT--TCGGTACTTTCCT-CA-CGTCCTT-GATTC--TACAA--A-CATCTT---TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTA------GGTTAATCAAAATAT------AT-ATTTTTTGGTTGTTTTAC--ATA--AAA--A--TCCAA-TAA-A--AATAT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--TTT---TGAGG--T--TAT--TTCCCATA--C--ATGT-TTT----ACATA---T-T-T-TTACA-ATGAT-AAAt
gi|6 : TTCAAA-ATTTA-T-GTTTTCTTAA--TTCA-TAATTGTCAGTTTGCCG-TTTAACAA-TCGTGT-CA-AAAGG-A-CATACATCTG-GAACAT-G-TCT-T-A-TATAAC-AATAAA-A--CT-ATCA-AA------GGCA---TG-ACATGTATCGACATAATTTTCC-TC--TAAGAGCAATTAACTG-A-TTT--TTTCGA-ACATTAT---GTTAT---T-GAAAT-A-ATATG-AACGCTAGTTCATAACATGCTATACTCAATGCAGCTACATCCTTAAAAGAAGCTTCAACATGAGCAGCATGTATAATTTGTTGGTATTTTCTTCCAATGTCCTTGGATTC--TGCAATTA-CATCTTAATTATTTGTG-AAATGGAACAGTT--GCC--TATTA--GTAGA-GA
gi|7 : -CCAATGATAAT-TTCTCTA--CATTGTC-ATACTAC-----TATTAAAAAGGATTGGT-ATA------T---GGGTTT-ATGC--AATTTCTTTT-TT--ACAA-AAATTT--C-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGATTTT---TTTCA-TCGATA-----TGATTTCAAAATTGAGCTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCATGA------AAATT-------CATGTC-TTAG----C-TT--TTTGATA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
gi|8 : ATTA--TACAG-AA-CATTTTA--TATTTGT--AGATTCTGCA--T--G-CAACA-TA--ATATA-A--TA------AATTATTCAAAA-GTAAAATACC-ACTTTGTTGTTATTTTCA--TAGT-AGA--A--ACCCA-CAA-C--T--AT--GTGCTTCC-ATTG--A-ATTT----CAAA---GTTTA-A-AATAGATT---CTAG------TGT--TTTCCAAA--------T-TTTCATAAC--A---T-T-T-ATACATTCGA--AAATTAAATGCTT-A-G---AGTTTTC--G---AT-TTT------ATC-CAAACA----AT-TGGAACATTT-GGG---GGATGCAT-----GTTTCC--A--TTTGCTT-AGAGATAA----ATTACA-A---CA-G-AGCAAATTC-AGA--AGTTTAAAATTAAATTCCGCAAttcaataggtttaataccattttcatccactatatcaaattcatctcaaataaagtttgt
gi|9 : CCAA-TAA-A--A--ATATGT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--TTT---TGAGG--T--TAT--T-CCCATA--C--ATGT-TTT----AC--A---TAT-T-TTAAC-ATGAT-AAAT--AATGTTC-A-T---TGTCCTC--A-ATAG-TTT------CTC-TACATA----AT-T--CACATTT-GTC---TGATTCAT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTACT-AGTGGA-G-ATT--ATTG-AGT--ATTTTAAAATTAAATCCTGCAACCTTTTTT---CATA-CAT-----ATTTACAATTTTG-TTTTTGTAAA---TAGTTT-TCCA-GCCAATCTTATCAATTTATT--T-AAAGTTC-----Tttg
Alignments
lowQualScore : 1111111 1111 2222222 22222222 111 222222 222222222 11 11 111 11 11 11 444444 222222222 111 111111 1111111 1111 111 111 11111 2222 1111 111111 11111 111111111 111111 1111 1111111 4444444444444444 1111 11111 6666666666 111 11 22222 11111 11 1 4444444444 1 11 1 11 1 22222 1 11 1 1 1 111 11111 11 1 1 1 111 222222 2222222 1 2222222222 1 11 111 111 111111 3333333333333333 11 11
lowQualScore : 1111111 5 6666 66 4 4 4 5 3 55 3 3 7 3 3 666 3 3 666 2 7 3 3 3 7 3 4 4 1111111 3 00000000 222 4 3 4 4 4 4 4 4 4 4 4 66 4 000000 777 4 3 5 0 5 66 000000000 5 6 6 8 0 8 0 11 11 8 0 8 99 99 5 222 33 55 99 6 55 6 99 6 000000 6 0 555555555 000 6 222222 55 9999999 77 77 5 8888 2222 777 666 888 000 0 00000 77 33 0000 5 0000 444444 5 5 55 2 55 88 3 1 5 77777 777777777 444444 5 2222 5 77 3 5 8888888 00 66 3 5 3333333333333333 5 77 1 1 9999 6 66666 5555555555 1 0 111 9 6 6 1 00 99 33333 66666 1 99 0 3333333333 0 33 0 33 0 11111 0 33 0 2 0 0 0 8 0 8 88 111 6 66666 33 0 3 0 0 3 777 4 888888 7777777 3 2 0 3333333333 1 0 11 444 0 77 444 555555 6666666666666666 8 8 0 99 8 11
lowQualScore : ....... . .... .. . . . . . .. . . . . . ... . . ... . . . . . . . . . ....... . ........ ... . . . . . . . . . . . .. . ...... ... . . . . . .. ......... . . . . . . . .. .. . . . .. .. . ... .. .. .. . .. . .. . ...... . . ......... ... . ...... .. ....... .. .. . .... .... ... ... ... ... . ..... .. .. .... . .... ...... . . .. . .. .. . . . ..... ......... ...... . .... . .. . . ....... .. .. . . ................ . .. . . .... . ..... .......... . . ... . . . . .. .. ..... ..... . .. . .......... . .. . .. . ..... . .. . . . . . . . . .. ... . ..... .. . . . . . ... . ...... ....... . . . .......... . . .. ... . .. ... ...... ................ . . . .. . ..
lowQualScore : 9999999 0 9999 11 4 0 0 7 6 00 6 6 3 6 6 444 6 6 444 8 3 6 6 6 4 6 7 0 7777777 6 77777777 222 8 7 4 4 4 4 4 4 4 4 4 11 4 666666 888 4 2 0 1 0 99 999999999 7 7 7 0 8 0 8 00 00 0 8 0 22 66 7 999 66 77 22 7 88 7 22 7 000000 0 8 222222222 222 7 888888 99 6666666 99 99 7 3333 1111 999 111 999 000 7 11111 99 44 9999 0 6666 999999 0 0 44 5 44 22 0 7 7 11111 444444444 444444 7 1111 7 99 6 7 6666666 66 99 6 0 9999999999999999 7 99 4 7 7777 7 77777 0000000000 0 8 888 0 7 7 0 22 22 22222 77777 4 00 0 2222222222 0 88 0 88 0 88888 0 22 0 5 0 0 6 0 8 0 88 777 7 77777 88 0 2 0 0 2 555 2 888888 8888888 2 5 0 0000000000 2 0 00 000 8 00 000 000000 0000000000000000 0 0 8 00 0 00
consensus : TTTTTAAA-A---A-T-GTTTTTT--A--TTCA-TA-TT-TCAATTTGCCC-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TATAAC-AATAAA-A--C--ATTA-A-------TGCA---TGTACATGTATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATAT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTAG-----GGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--NTAT-AAA--A--TCCAA-TAA-A--A--AT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--NTT---TGAGG--T--TAT--TTCCCATA---CATGT-TTT----AC--A---T-T-T-TTACA-ACGAT-AAATCAAGTGTTT-A-T---TGTCTTC--A-ACAT-TTT------CTC-TACATA----AT-T--CACATTT-GTCTGATTCGT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTACA-A---GG-G-ATT--ATTG-AGT--ATTTTAAAATTAAATTCCGCAACCTTTTTTTT-CATA-CAT-----ATTT----------TTTTTGTAAA--TTAGTTC-CCAA-GANAAT-TTATCAA--TATT--T-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ACAA-AAATTT--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCGTGA------AAATTC-----GCATGTC-TTAG----C-TT--TTAAATA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
Reference ( family-4547 ) : TTTTTAAA-A---A-T-GTTTTTT--A--TTCA-TA-TT-TCAATTTGCCC-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TATAAC-AATAAA-A--C--ATTA-A-------TGCA---TGTACATGTATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATAT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTAG-----GGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--NTAT-AAA--A--TCCAA-TAA-A--A--AT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--NTT---TGAGG--T--TAT--TTCCCATA---CATGT-TTT----AC--A---T-T-T-TTACA-ACGAT-AAATCAAGTGTTT-A-T---TGTCTTC--A-ACAT-TTT------CTC-TACATA----AT-T--CACATTT-GTCTGATTCGT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTACA-A---GG-G-ATT--ATTG-AGT--ATTTTAAAATTAAATTCCGCAACCTTTTTTTTCCATA-CAT-----ATTT----------TTTTTGTAAA--TTAGTTC-CCAA-GANAAT-TTATCAA--TATT--T-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ACAA-AAATTT--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCGTGA------AAATTC-----GCATGTC-TTAG----C-TT--TTAAATA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
gi|1 : TTTTTATA-A---A-T-GTTTTTT--A--TTCAATA-TT-TCAATTTGCCC-TT---CAA-T-GTAT-CA-A---G-A-CAC---TCGGAGTGCATAG-TCTATGA-GATAAA-AATAAA-A--C--ATTA-AATAAAGGCGCAATGTATACATCTAT--ACATAATTT-CATTCAGCAAT-GCA-TAA-CTGCA-TCTTATTTCGACACATCAAGAAATTTTCTAT-G-CAT-TTATATGTAAC-TT--T---TA--------TAC-CAA
gi|1 : ttTTTTTGGTTGTTTGAA--CTAT-AAA--ACATCCAAATAA-AGCA--AT--TG--TTCC-GTTT--TCATATGATTCAAACATTTTGG-TTAAT--GTTGTGTGAGAGTT--TATAATATCCATA---GATGT-TTT----ACC-A---T-TGTGTTACA--TGAT-AAATCA-GTGTTTTA-TCGATGTCTTC--ATACAG-TGTGGTGTACTC-TACATATAATATAT--CACATTTTGTCTGATTCTC-----TTTTCTTAAATTTTTCCTGAAAAGAGA-TTTGTT-CA-A---TA-C-GTC--AGTGTGGT--ATTTTGAAATTAAA-TCTGTAACTTTTTTTTT--ATAGCAT-----ATTTTTAATTTTGGTTTTTGTAAATTTTAGATCTCCAA-GAAAAA-TGTTCAA--TATT--T--ATGTTCTTCCTTACAAAAC-GGATTGGT-ATA------TATGGGGTTTAATGA--AATTTCTTTT-TCTAACAACAAATTT--T--TATCA--CG-TTTTCGATGGATAATATCAGCTTTTTTCAATAGGA-TTTGTCTCTCATTAGATGGAGAATGATTTctgcacgcaattctattcgacccatgtaatatagccttttctgtgaggagtaattcttactctcactatcttaggcagtatttgcgggcaaatattctatcatcatagcttagtgctactataaaatagctcacgcttatgtaagacagaatgttaaagttactttgtgtgctaaaacttgttctaatttgactctttttggttgtttgaactataaaacatccaaataaagcaattgttccgttttcatatgattcaaacattttggttaatgttgtgtgagagtttataatatccatagatgttttaccattgtgttacatgataaatcagtgttttatcgatgtcttcatacagtgtggtgtactctacatataatatatcacattttgtctgattctcttttcttaaatttttcctgaaaagagatttgttcaatacgtcagtgtggtattttgaaattaaatctgtaactttttttttatagcatatttttaattttggtttttgtaaattttagatctccaagaaaaatgttcaatatttatgttcttccttacaaaacggattggtatatatggggtttaatgaaatttctttttctaacaacaaatttttatcacgttttcgatggataatatcagcttttttcaataggatttgtctctcattagatggagaatgatttatttaaatacattga
gi|10 : tttttttataaatgttttttattcaatatttcaatttgcccttcaatgtatcaagacactcggagtgcatagtctatgagataaaaataaaacattaaataaaggcgcaatgtatacatctatacataatttcattcagcaatgcataactgcatcttatttcgacacatcaagaaattttctatgcatttatatgtaacttttataccaactgcacgcaattctattcgacccatgtaatatagccttttctgtgaggagtaattcttactctcactatcttaggcagtatttgcgggcaaatattctatcatcatagcttagtgctactataaaatagctcacgcttatgtaagacagaatgttaaagttactttgtgtgctaaaacttgttctaatttgactcTAAA-A---G-G-GTTTT----A--TTCA-TA-TT-TCAATTTGCCC-TT--ATAA-T-GT-T-CTTA---G-A-CAC---TCGG-GTGCAT-G-TCT-TGA-TA--AC-AATAAA-AAAT--ATGA-A-------TGCA---TGTATATGTATC-ACATAA----CA-TCA-TAAT-GCA-TTA-CTG-A-TGT--TTTCTA-ACAT------ATTAT---T-AAAAT-CTATATGTAAC-CT--TTTATG--------TAC-AAGTG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGTAG-ATATAT--TT--TTGGCACTTTCTT-CAATGTCCTT-GATTC--TGCAA-CA-CATCTTA--TATTTGA--AAAT--atttaaatacattga
gi|11 : AG-TA-CATCTTA--TATTTGTTTAAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTA------AGCTGTTCAAAATGA------CA-ATTCTCTGGTTGTTTTCATGATATGAAA--A--TTTAA----------------T--TACC-ATTTGAT-ATGT----C-AA---TTTGA-T-AAG--CTT---TGATG--TTATAT--TTCCCATA---CATAC-TTT----AC--A---T-T-T----CA-ACCA-------AAGTATTT-A---------------------------------------A----AA-T--CA-AGTT-ATCTGATTCGG-----TTTTCTTTG--TTTTCCTGAGAAATAA-TTTGTGACA-
gi|12 : TGT-TTC----AC--T---T-G-T-TCAAA-ACAAT-AAATCAAGTGTTT-A-T---TGCCTCC--A-CCATATTT------CTTATACACA----AT-T--CACACAT-GCCTGAGTCGGCCGGATTTTCTGTA--TTTTCCCGAGAAG-GATTTTGTTAC----------------ATTG-AGTAAAGTTTGAATTTAAATCCTGCAACC----------------C-----ATCT----------TATCTG-AAA--TGAACTC-C--A-GAGGA--TTATTAT--CATT--CAAAAGTTC-----TTTTATA--GAAgaaaatatcactgataaagttgattc
gi|13 : TTTTTAA--------TCGTTTCTT--AATTTCA-TA-TT-T--ATTTGCCC-TT--ACAAAT-GT-TTCA-A---GTA-CAC---TCAGTGCGCAT-G-TCT-TGA-TA--AC-ACTACA----T--ATTA-A--------GCA---GG-ACAT--ATC-A-ATA--TT-CA-TGA-TAAT--CA-TTA-CTG-AATTT--TTTCGA-AC-T------ATTAT---TTGAAGTTCTATATGTAAC-CT--TTTAT
gi|14 : tT---TTCCA-TAGATG-----T-ATTTCAAAATTGAGTTT--TATAGCTCAAGT-TTTGACTAGGGTAAAGTGCTGTGATTTTAGAAATAC-----GC-------TAGAACAC-TGCATAAAATATGTA--TTATTGCACACAA--TCA---CACT---CTATC--------ACAC----AAAT-ATTTCTTTGTTTCTCT-ATA--TTGT-AG--TAAAACTAg
gi|15 : A--TTTCT---CATACATCTAGCTTACTTGTC--GC--------ATATACAAAAATTGTTTCTTT-ATCTTCTAAGATCTCATACGAATAAAACCA
gi|16 : -TT-TCAGTTTGCCT-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCTG-GCACAT-G-TCT-T---TATAAC-AATAAA-A--CATATCA-A-------AGCA---TGAACATGTATC-ACATAATTT-CC-TCA-TAAA-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-ttcaatacggttttacatctctaccatttttcatccacaatattccaactaacataattcaaaaaccagctcgt
gi|17 : -A-------TGCA---TGTACATGTATC-ACATAATTT-CA-TCT-TAAT-GCA-TTA-CTG-A-TTT--TTTCTA-ACAT------ATTAT---T-G--AT-CTATATGTAAC-CT--TTTATA--------TAC-AAGTG-AG-TACATCCTTAA
gi|18 : CAT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TCTGTTACATA---GG-ATATT--ATTG-AGT--ATCTTAAAATTAAATTCCGCAACCTTTTTTTT-CATA-CAT-----ATTT----------
gi|19 : TTTTTAAA-T---A-T-GTTTTTT--A--TTCA-TA-TT-TGA--TTGCCCTTT--ACAA-T-GT-T-CA-C---G-ATCAC---TC-G-GCGCAT-GTTCT-CTATTCTAAC-AAATAA-A--C--ATTA-acaat
gi|2 : TTTTTAAA-A---A-T-GTTTT----A--TTCA-TA-TT-TTAATTTGTCC-TT--GCAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCA-TGA-TATAAC-AATAAA-G--C--ATTA-A-------TGCA---TGTACATATATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CGATATGTAAC-CT--TTTATA--------TAC-CATTG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATGT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-T--TA-TA--GCAAA-AATTAGCTATAGGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--ATAT-AAA--A--TCCAA-TAA-G--A--AT--GT--TTCT-ATTT--T-ATGT----CAAA---CTTGG-T-AAT--GTT---TGAGG--T--TAT--TTCCCATATTTTATGT-TTT----AC--A---T-T-T-TTACA-ATGAT-AAATCAAGTATTC-A-T---TGTCTTC--A-ACAT-TTT------CTC-TACATA----AT-T--CACATTT-GTCTGATTCAT-----TGTTCTTAA--TTTTCCTGAGAAAAGA-TTTGTTACACA---GGCG-ATT--ATTG-AGT--ATTTTAAAATTAAATTCTGCAACCTTTTTTTTCCATA-CAT-----A---------------TTTGTAAA--TTAGTCC-CCAA-GAAAAT-TTATCAA--TATT--T-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ATAA-AAATTA--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATCAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TATGGTAAA---TCTTGA------AAATTC-----ACATTTC-TTAG----C-TT--TTAAAAA-ATA--TTACT---CATAATTTTG---AATT---C--GC--------ATA-----AAAT-GTTTCCTT-TTCTTCTAAGA--TTAT-CG--TAAAACCAt
gi|20 : TTTT--A--TTCG-TA-TT-TCAATTTGTCC-TT--ACAA-T-GT-T-CA-A---G-A-TAC---TCGG-GCGCAT-G-TCT-TAA-TA
gi|21 : ttttatgTTGCCC-TT--ACAA-T-GT-T-CA-C---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TCTAACAAATAAACA--T--ATTA-A-------
gi|22 : ATAAG-TCATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTc
gi|3 : -TTT------CTC-TACATA----AT-T--CACA-TT-GTCC--TTTG------ATTTCTTAA--TTTT-CTGAG-AATTA-TTTGGTACA-A---GG-A------ATTG-AAT--ATTT--GAATTAAATTCTGCA--CCTTTTTTTCAATA-CATTTACAATTTGG--------TTTTTGTAAA--TTGG-TC-TCAA-GAAAAT-CTATCAA--T-TT-----AAGTTC-----TATAAAA--GGATTGGTGATAGAAAGCG---GGGTTT-ATGACGATTTTCTTTTGTT--ACAA-AAACTTGCTAATA-CACTCGATTTTC-AT-GAT-ATAAAAA-CGATC---AT-AAA---A---TTTCA-TAGATG-----TGATTTCAAAACTGAGTTTTCCATA-CGC-AGTGTTGGA-TAGGAT-AA---TCATGA------AAATTCACGATGTATGTCTTTCG----CTTT--TTAAACA-ATAGGTTACT---C-TAATATTG---TACT---C--GCGACTTTTGGTA-----CTTT-GTTTCTTT-TTCTTCTAAGAG-TTAT-TG--CAAAATC
gi|4 : TTTTTAAA-A---AAT-GTTTTT---A--TTCA-TA-TT-TTAAATTGCCA-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-ACGCAC-G-TCT-T------------T-----------TTGCA-------TGTAC--TGTACATATATT-ACATAATTT-CA-TCA-CAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-TAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCTGTAAA-GAAGCTTTAACATGAGCAG-ATATGT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTCCTCACAA-TAGCATCTT---TATTTGT--AAA---ATCAGTTTGG-CG-TA-TAGTGTAGAGAATTAG-----GTTTA-TCAAAATGT------CTAATTTGTTTGTTG-TTTCA--CTAT-AAACGA---CCAA-TAAGA--A--AT--GT--TTCCAAGTT--T-ATA-----CAAACT-TCTGATT-AAT--TTT---T-AGG--T--TAT--TT-TCATATT-CATATGTTT----AC--AATTT-T-T-TTA-A-ATGATAAAATCAAGT-TTT-ATT---TGTCTTCCAA-ATAT-TTT------TTcttcaaagtattatacacaataacaaattacatatctgaa
gi|5 : tTTTAAATA---A-T-GTTTTT---A--T-CA-TA-TT-T-AATTTGCCC-TT--A-AA-T-GT-T-CA-A---G-A-CAC------------AT-G-TCT-TGA-TACAA---ATAAACA--T--ATTA-A-------TGCA---TGTACATATATC-ACATAATT--CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--GTTCGA-ACAT------ATTAT---T-GAATT-CTAT-TGTAAC-CT--TTTAT---------TAC-CAATG-A----TATCATTTAA-GA-GCTTTAACATGAGCAG-A-ATAT--TT--TCGGTACTTTCCT-CA-CGTCCTT-GATTC--TACAA--A-CATCTT---TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTA------GGTTAATCAAAATAT------AT-ATTTTTTGGTTGTTTTAC--ATA--AAA--A--TCCAA-TAA-A--AATAT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--TTT---TGAGG--T--TAT--TTCCCATA---CATGT-TTT----ACATA---T-T-T-TTACA-ATGAT-AAAt
gi|6 : TTCAAA-ATTTA-T-GTTTTCTTAA--TTCA-TAATTGTCAGTTTGCCG-TTTAACAA-TCGTGT-CA-AAAGG-A-CATACATCTG-GAACAT-G-TCT-T-A-TATAAC-AATAAA-A--CT-ATCA-AA------GGCA---TG-ACATGTATCGACATAATTTTCC-TC--TAAGAGCAATTAACTG-A-TTT--TTTCGA-ACATTAT---GTTAT---T-GAAAT-A-ATATG-AACGCTAGTTCATAACATGCTATACTCAATGCAGCTACATCCTTAAAAGAAGCTTCAACATGAGCAGCATGTATAATTTGTTGGTATTTTCTTCCAATGTCCTTGGATTC--TGCAATTA-CATCTTAATTATTTGTG-AAATGGAACAGTT--GCC--TATTA--GTAGA-GA
gi|7 : -CCAATGATAAT-TTCTCTA--CATTGTC-ATACTAC-----TATTAAAAAGGATTGGT-ATA------T---GGGTTT-ATGC--AATTTCTTTT-TT--ACAA-AAATTT--C-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGATTTT---TTTCA-TCGATA-----TGATTTCAAAATTGAGCTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCATGA------AAATT-------CATGTC-TTAG----C-TT--TTTGATA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
gi|8 : ATTA--TACAG-AA-CATTTTA--TATTTGT--AGATTCTGCA--T--G-CAACA-TA--ATATA-A--TA------AATTATTCAAAA-GTAAAATACC-ACTTTGTTGTTATTTTCA--TAGT-AGA--A--ACCCA-CAA-C--T--AT--GTGCTTCC-ATTG--A-ATTT----CAAA---GTTTA-A-AATAGATT---CTAG------TGT--TTTCCAAA-------T-TTTCATAAC--A---T-T-T-ATACATTCGA--AAATTAAATGCTT-A-G---AGTTTTC--G---AT-TTT------ATC-CAAACA----AT-TGGAACATTT-GGGGGATGCAT-----GTTTCC--A--TTTGCTT-AGAGATAA----ATTACA-A---CA-G-AGCAAATTC-AGA--AGTTTAAAATTAAATTCCGCAAttcaataggtttaataccattttcatccactatatcaaattcatctcaaataaagtttgt
gi|9 : CCAA-TAA-A--A--ATATGT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--TTT---TGAGG--T--TAT--T-CCCATA---CATGT-TTT----AC--A---TAT-T-TTAAC-ATGAT-AAAT--AATGTTC-A-T---TGTCCTC--A-ATAG-TTT------CTC-TACATA----AT-T--CACATTT-GTCTGATTCAT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTACT-AGTGGA-G-ATT--ATTG-AGT--ATTTTAAAATTAAATCCTGCAACCTTTTTT---CATA-CAT-----ATTTACAATTTTG-TTTTTGTAAA---TAGTTT-TCCA-GCCAATCTTATCAATTTATT--T-AAAGTTC-----Tttg
Alignments
lowQualScore : 1111111 1111 2222222 22222222 111 222222 222222222 11 11 111 11 11 11 444444 222222222 111 111111 1111111 1111 111 111 11111 2222 1111 111111 11111 111111111 111111 1111 1111111 4444444444444444 11111 6666666666 111 11 22222 11111 11 1 4444444444 1 11 1 11 1 22222 1 11 1 1 1 111 11111 11 1 1 1 111 222222 2222222 1 2222222222 1 11 111 111 111111 3333333333333333 11 11
lowQualScore : 1111111 5 6666 66 4 4 4 5 3 55 3 3 7 3 3 666 3 3 666 2 7 3 3 3 7 3 4 4 1111111 3 00000000 222 4 3 4 4 4 4 4 4 4 4 4 66 4 000000 777 4 3 5 0 5 66 000000000 5 6 6 8 0 8 0 11 11 8 0 8 99 99 5 222 33 55 99 6 55 6 99 6 000000 6 0 555555555 000 6 222222 55 9999999 77 77 5 8888 2222 777 666 888 000 0 00000 77 33 0000 5 0000 444444 5 5 55 2 55 88 3 1 5 77777 777777777 444444 5 2222 5 77 3 5 8888888 00 66 3 5 3333333333333333 5 77 1 7 77 6 66666 5555555555 1 0 111 9 6 6 1 00 99 33333 66666 1 99 0 3333333333 0 33 0 33 0 11111 0 33 0 2 0 0 0 8 0 8 88 111 6 66666 33 0 3 0 0 3 777 4 888888 7777777 3 2 0 3333333333 1 0 11 444 0 77 444 555555 6666666666666666 8 8 0 99 8 11
lowQualScore : ....... . .... .. . . . . . .. . . . . . ... . . ... . . . . . . . . . ....... . ........ ... . . . . . . . . . . . .. . ...... ... . . . . . .. ......... . . . . . . . .. .. . . . .. .. . ... .. .. .. . .. . .. . ...... . . ......... ... . ...... .. ....... .. .. . .... .... ... ... ... ... . ..... .. .. .... . .... ...... . . .. . .. .. . . . ..... ......... ...... . .... . .. . . ....... .. .. . . ................ . .. . . .. . ..... .......... . . ... . . . . .. .. ..... ..... . .. . .......... . .. . .. . ..... . .. . . . . . . . . .. ... . ..... .. . . . . . ... . ...... ....... . . . .......... . . .. ... . .. ... ...... ................ . . . .. . ..
lowQualScore : 9999999 0 9999 11 4 0 0 7 6 00 6 6 3 6 6 444 6 6 444 8 3 6 6 6 4 6 7 0 7777777 6 77777777 222 8 7 4 4 4 4 4 4 4 4 4 11 4 666666 888 4 2 0 1 0 99 999999999 7 7 7 0 8 0 8 00 00 0 8 0 22 66 7 999 66 77 22 7 88 7 22 7 000000 0 8 222222222 222 7 888888 99 6666666 99 99 7 3333 1111 999 111 999 000 7 11111 99 44 9999 0 6666 999999 0 0 44 5 44 22 0 7 7 11111 444444444 444444 7 1111 7 99 6 7 6666666 66 99 6 0 9999999999999999 7 99 4 3 77 7 77777 0000000000 0 8 888 0 7 7 0 22 22 22222 77777 4 00 0 2222222222 0 88 0 88 0 88888 0 22 0 5 0 0 6 0 8 0 88 777 7 77777 88 0 2 0 0 2 555 2 888888 8888888 2 5 0 0000000000 2 0 00 000 8 00 000 000000 0000000000000000 0 0 8 00 0 00
consensus : TTTTTAAA-A---A-T-GTTTTTT--A--TTCA-TA-TT-TCAATTTGCCC-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TATAAC-AATAAA-A--C--ATTA-A-------TGCA---TGTACATGTATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATAT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTAG-----GGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--NTAT-AAA--A--TCCAA-TAA-A--A--AT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--NTT---TGAGG--T--TAT--TTCCCATA---CATGT-TTT----AC--A---T-T-T-TTACA-ACGAT-AAATCAAGTGTTT-A-T---TGTCTTC--A-ACAT-TTT------CTC-TACATA----AT-T--CACATTT-GTCTGATTCGT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTACA-A---GG-G-ATT--ATTG-AGT--ATTTTAAAATTAAATTCCGCAACCTTTTTTTT-CATA-CAT-----ATTT----------TTTTTGTAAA--TTAGTTC-CCAA-GANAAT-TTATCAA--TATT--T-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ACAA-AAATTT--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCGTGA------AAATTC-----GCATGTC-TTAG----C-TT--TTAAATA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
Reference ( family-4547 ) : TTTTTAAA-A---A-T-GTTTTTT--A--TTCA-TA-TT-TCAATTTGCCC-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TATAAC-AATAAA-A--C--ATTA-A-------TGCA---TGTACATGTATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATAT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTAG-----GGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--NTAT-AAA--A--TCCAA-TAA-A--A--AT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--NTT---TGAGG--T--TAT--TTCCCATA---CATGT-TTT----AC--A---T-T-T-TTACA-ACGAT-AAATCAAGTGTTT-A-T---TGTCTTC--A-ACAT-TTT------CTC-TACATA----AT-T--CACATTT-GTCTGATTCGT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTACA-A---GG-G-ATT--ATTG-AGT--ATTTTAAAATTAAATTCCGCAACCTTTTTTTT-CATA-CAT-----ATTT----------TTTTTGTAAA--TTAGTTC-CCAA-GANAAT-TTATCAA--TATT--T-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ACAA-AAATTT--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCGTGA------AAATTC-----GCATGTC-TTAG----C-TT--TTAAATA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
gi|1 : TTTTTATA-A---A-T-GTTTTTT--A--TTCAATA-TT-TCAATTTGCCC-TT---CAA-T-GTAT-CA-A---G-A-CAC---TCGGAGTGCATAG-TCTATGA-GATAAA-AATAAA-A--C--ATTA-AATAAAGGCGCAATGTATACATCTAT--ACATAATTT-CATTCAGCAAT-GCA-TAA-CTGCA-TCTTATTTCGACACATCAAGAAATTTTCTAT-G-CAT-TTATATGTAAC-TT--T---TA--------TAC-CAA
gi|1 : ttTTTTTGGTTGTTTGAA--CTAT-AAA--ACATCCAAATAA-AGCA--AT--TG--TTCC-GTTT--TCATATGATTCAAACATTTTGG-TTAAT--GTTGTGTGAGAGTT--TATAATATCCATA---GATGT-TTT----ACC-A---T-TGTGTTACA--TGAT-AAATCA-GTGTTTTA-TCGATGTCTTC--ATACAG-TGTGGTGTACTC-TACATATAATATAT--CACATTTTGTCTGATTCTC-----TTTTCTTAAATTTTTCCTGAAAAGAGA-TTTGTT-CA-A---TA-C-GTC--AGTGTGGT--ATTTTGAAATTAAA-TCTGTAA-CTTTTTTTT-TATAGCAT-----ATTTTTAATTTTGGTTTTTGTAAATTTTAGATCTCCAA-GAAAAA-TGTTCAA--TATT--T--ATGTTCTTCCTTACAAAAC-GGATTGGT-ATA------TATGGGGTTTAATGA--AATTTCTTTT-TCTAACAACAAATTT--T--TATCA--CG-TTTTCGATGGATAATATCAGCTTTTTTCAATAGGA-TTTGTCTCTCATTAGATGGAGAATGATTTctgcacgcaattctattcgacccatgtaatatagccttttctgtgaggagtaattcttactctcactatcttaggcagtatttgcgggcaaatattctatcatcatagcttagtgctactataaaatagctcacgcttatgtaagacagaatgttaaagttactttgtgtgctaaaacttgttctaatttgactctttttggttgtttgaactataaaacatccaaataaagcaattgttccgttttcatatgattcaaacattttggttaatgttgtgtgagagtttataatatccatagatgttttaccattgtgttacatgataaatcagtgttttatcgatgtcttcatacagtgtggtgtactctacatataatatatcacattttgtctgattctcttttcttaaatttttcctgaaaagagatttgttcaatacgtcagtgtggtattttgaaattaaatctgtaactttttttttatagcatatttttaattttggtttttgtaaattttagatctccaagaaaaatgttcaatatttatgttcttccttacaaaacggattggtatatatggggtttaatgaaatttctttttctaacaacaaatttttatcacgttttcgatggataatatcagcttttttcaataggatttgtctctcattagatggagaatgatttatttaaatacattga
gi|10 : tttttttataaatgttttttattcaatatttcaatttgcccttcaatgtatcaagacactcggagtgcatagtctatgagataaaaataaaacattaaataaaggcgcaatgtatacatctatacataatttcattcagcaatgcataactgcatcttatttcgacacatcaagaaattttctatgcatttatatgtaacttttataccaactgcacgcaattctattcgacccatgtaatatagccttttctgtgaggagtaattcttactctcactatcttaggcagtatttgcgggcaaatattctatcatcatagcttagtgctactataaaatagctcacgcttatgtaagacagaatgttaaagttactttgtgtgctaaaacttgttctaatttgactcTAAA-A---G-G-GTTTT----A--TTCA-TA-TT-TCAATTTGCCC-TT--ATAA-T-GT-T-CTTA---G-A-CAC---TCGG-GTGCAT-G-TCT-TGA-TA--AC-AATAAA-AAAT--ATGA-A-------TGCA---TGTATATGTATC-ACATAA----CA-TCA-TAAT-GCA-TTA-CTG-A-TGT--TTTCTA-ACAT------ATTAT---T-AAAAT-CTATATGTAAC-CT--TTTATG--------TAC-AAGTG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGTAG-ATATAT--TT--TTGGCACTTTCTT-CAATGTCCTT-GATTC--TGCAA-CA-CATCTTA--TATTTGA--AAAT--atttaaatacattga
gi|11 : AG-TA-CATCTTA--TATTTGTTTAAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTA------AGCTGTTCAAAATGA------CA-ATTCTCTGGTTGTTTTCATGATATGAAA--A--TTTAA----------------T--TACC-ATTTGAT-ATGT----C-AA---TTTGA-T-AAG--CTT---TGATG--TTATAT--TTCCCATA---CATAC-TTT----AC--A---T-T-T----CA-ACCA-------AAGTATTT-A---------------------------------------A----AA-T--CA-AGTT-ATCTGATTCGG-----TTTTCTTTG--TTTTCCTGAGAAATAA-TTTGTGACA-
gi|12 : TGT-TTC----AC--T---T-G-T-TCAAA-ACAAT-AAATCAAGTGTTT-A-T---TGCCTCC--A-CCATATTT------CTTATACACA----AT-T--CACACAT-GCCTGAGTCGGCCGGATTTTCTGTA--TTTTCCCGAGAAG-GATTTTGTTAC----------------ATTG-AGTAAAGTTTGAATTTAAATCCTGCAACC----------------C-----ATCT----------TATCTG-AAA--TGAACTC-C--A-GAGGA--TTATTAT--CATT--CAAAAGTTC-----TTTTATA--GAAgaaaatatcactgataaagttgattc
gi|13 : TTTTTAA--------TCGTTTCTT--AATTTCA-TA-TT-T--ATTTGCCC-TT--ACAAAT-GT-TTCA-A---GTA-CAC---TCAGTGCGCAT-G-TCT-TGA-TA--AC-ACTACA----T--ATTA-A--------GCA---GG-ACAT--ATC-A-ATA--TT-CA-TGA-TAAT--CA-TTA-CTG-AATTT--TTTCGA-AC-T------ATTAT---TTGAAGTTCTATATGTAAC-CT--TTTAT
gi|14 : tT---TTCCA-TAGATG-----T-ATTTCAAAATTGAGTTT--TATAGCTCAAGT-TTTGACTAGGGTAAAGTGCTGTGATTTTAGAAATAC-----GC-------TAGAACAC-TGCATAAAATATGTA--TTATTGCACACAA--TCA---CACT---CTATC--------ACAC----AAAT-ATTTCTTTGTTTCTCT-ATA--TTGT-AG--TAAAACTAg
gi|15 : A--TTTCT---CATACATCTAGCTTACTTGTC--GC--------ATATACAAAAATTGTTTCTTT-ATCTTCTAAGATCTCATACGAATAAAACCA
gi|16 : -TT-TCAGTTTGCCT-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCTG-GCACAT-G-TCT-T---TATAAC-AATAAA-A--CATATCA-A-------AGCA---TGAACATGTATC-ACATAATTT-CC-TCA-TAAA-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-ttcaatacggttttacatctctaccatttttcatccacaatattccaactaacataattcaaaaaccagctcgt
gi|17 : -A-------TGCA---TGTACATGTATC-ACATAATTT-CA-TCT-TAAT-GCA-TTA-CTG-A-TTT--TTTCTA-ACAT------ATTAT---T-G--AT-CTATATGTAAC-CT--TTTATA--------TAC-AAGTG-AG-TACATCCTTAA
gi|18 : CAT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TCTGTTACATA---GG-ATATT--ATTG-AGT--ATCTTAAAATTAAATTCCGCAACCTTTTTTTT-CATA-CAT-----ATTT----------
gi|19 : TTTTTAAA-T---A-T-GTTTTTT--A--TTCA-TA-TT-TGA--TTGCCCTTT--ACAA-T-GT-T-CA-C---G-ATCAC---TC-G-GCGCAT-GTTCT-CTATTCTAAC-AAATAA-A--C--ATTA-acaat
gi|2 : TTTTTAAA-A---A-T-GTTTT----A--TTCA-TA-TT-TTAATTTGTCC-TT--GCAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCA-TGA-TATAAC-AATAAA-G--C--ATTA-A-------TGCA---TGTACATATATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CGATATGTAAC-CT--TTTATA--------TAC-CATTG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATGT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-T--TA-TA--GCAAA-AATTAGCTATAGGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--ATAT-AAA--A--TCCAA-TAA-G--A--AT--GT--TTCT-ATTT--T-ATGT----CAAA---CTTGG-T-AAT--GTT---TGAGG--T--TAT--TTCCCATATTTTATGT-TTT----AC--A---T-T-T-TTACA-ATGAT-AAATCAAGTATTC-A-T---TGTCTTC--A-ACAT-TTT------CTC-TACATA----AT-T--CACATTT-GTCTGATTCAT-----TGTTCTTAA--TTTTCCTGAGAAAAGA-TTTGTTACACA---GGCG-ATT--ATTG-AGT--ATTTTAAAATTAAATTCTGCAACCTTTTTTTTCCATA-CAT-----A---------------TTTGTAAA--TTAGTCC-CCAA-GAAAAT-TTATCAA--TATT--T-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ATAA-AAATTA--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATCAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TATGGTAAA---TCTTGA------AAATTC-----ACATTTC-TTAG----C-TT--TTAAAAA-ATA--TTACT---CATAATTTTG---AATT---C--GC--------ATA-----AAAT-GTTTCCTT-TTCTTCTAAGA--TTAT-CG--TAAAACCAt
gi|20 : TTTT--A--TTCG-TA-TT-TCAATTTGTCC-TT--ACAA-T-GT-T-CA-A---G-A-TAC---TCGG-GCGCAT-G-TCT-TAA-TA
gi|21 : ttttatgTTGCCC-TT--ACAA-T-GT-T-CA-C---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TCTAACAAATAAACA--T--ATTA-A-------
gi|22 : ATAAG-TCATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTc
gi|3 : -TTT------CTC-TACATA----AT-T--CACA-TT-GTCC--TTTG------ATTTCTTAA--TTTT-CTGAG-AATTA-TTTGGTACA-A---GG-A------ATTG-AAT--ATTT--GAATTAAATTCTGC-ACCTTTTTTTC-AATA-CATTTACAATTTGG--------TTTTTGTAAA--TTGG-TC-TCAA-GAAAAT-CTATCAA--T-TT-----AAGTTC-----TATAAAA--GGATTGGTGATAGAAAGCG---GGGTTT-ATGACGATTTTCTTTTGTT--ACAA-AAACTTGCTAATA-CACTCGATTTTC-AT-GAT-ATAAAAA-CGATC---AT-AAA---A---TTTCA-TAGATG-----TGATTTCAAAACTGAGTTTTCCATA-CGC-AGTGTTGGA-TAGGAT-AA---TCATGA------AAATTCACGATGTATGTCTTTCG----CTTT--TTAAACA-ATAGGTTACT---C-TAATATTG---TACT---C--GCGACTTTTGGTA-----CTTT-GTTTCTTT-TTCTTCTAAGAG-TTAT-TG--CAAAATC
gi|4 : TTTTTAAA-A---AAT-GTTTTT---A--TTCA-TA-TT-TTAAATTGCCA-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-ACGCAC-G-TCT-T------------T-----------TTGCA-------TGTAC--TGTACATATATT-ACATAATTT-CA-TCA-CAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-TAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCTGTAAA-GAAGCTTTAACATGAGCAG-ATATGT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTCCTCACAA-TAGCATCTT---TATTTGT--AAA---ATCAGTTTGG-CG-TA-TAGTGTAGAGAATTAG-----GTTTA-TCAAAATGT------CTAATTTGTTTGTTG-TTTCA--CTAT-AAACGA---CCAA-TAAGA--A--AT--GT--TTCCAAGTT--T-ATA-----CAAACT-TCTGATT-AAT--TTT---T-AGG--T--TAT--TT-TCATATT-CATATGTTT----AC--AATTT-T-T-TTA-A-ATGATAAAATCAAGT-TTT-ATT---TGTCTTCCAA-ATAT-TTT------TTcttcaaagtattatacacaataacaaattacatatctgaa
gi|5 : tTTTAAATA---A-T-GTTTTT---A--T-CA-TA-TT-T-AATTTGCCC-TT--A-AA-T-GT-T-CA-A---G-A-CAC------------AT-G-TCT-TGA-TACAA---ATAAACA--T--ATTA-A-------TGCA---TGTACATATATC-ACATAATT--CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--GTTCGA-ACAT------ATTAT---T-GAATT-CTAT-TGTAAC-CT--TTTAT---------TAC-CAATG-A----TATCATTTAA-GA-GCTTTAACATGAGCAG-A-ATAT--TT--TCGGTACTTTCCT-CA-CGTCCTT-GATTC--TACAA--A-CATCTT---TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTA------GGTTAATCAAAATAT------AT-ATTTTTTGGTTGTTTTAC--ATA--AAA--A--TCCAA-TAA-A--AATAT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--TTT---TGAGG--T--TAT--TTCCCATA---CATGT-TTT----ACATA---T-T-T-TTACA-ATGAT-AAAt
gi|6 : TTCAAA-ATTTA-T-GTTTTCTTAA--TTCA-TAATTGTCAGTTTGCCG-TTTAACAA-TCGTGT-CA-AAAGG-A-CATACATCTG-GAACAT-G-TCT-T-A-TATAAC-AATAAA-A--CT-ATCA-AA------GGCA---TG-ACATGTATCGACATAATTTTCC-TC--TAAGAGCAATTAACTG-A-TTT--TTTCGA-ACATTAT---GTTAT---T-GAAAT-A-ATATG-AACGCTAGTTCATAACATGCTATACTCAATGCAGCTACATCCTTAAAAGAAGCTTCAACATGAGCAGCATGTATAATTTGTTGGTATTTTCTTCCAATGTCCTTGGATTC--TGCAATTA-CATCTTAATTATTTGTG-AAATGGAACAGTT--GCC--TATTA--GTAGA-GA
gi|7 : -CCAATGATAAT-TTCTCTA--CATTGTC-ATACTAC-----TATTAAAAAGGATTGGT-ATA------T---GGGTTT-ATGC--AATTTCTTTT-TT--ACAA-AAATTT--C-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGATTTT---TTTCA-TCGATA-----TGATTTCAAAATTGAGCTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCATGA------AAATT-------CATGTC-TTAG----C-TT--TTTGATA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
gi|8 : ATTA--TACAG-AA-CATTTTA--TATTTGT--AGATTCTGCA--T--G-CAACA-TA--ATATA-A--TA------AATTATTCAAAA-GTAAAATACC-ACTTTGTTGTTATTTTCA--TAGT-AGA--A--ACCCA-CAA-C--T--AT--GTGCTTCC-ATTG--A-ATTT----CAAA---GTTTA-A-AATAGATT---CTAG------TGT--TTTCCAAA-------T-TTTCATAAC--A---T-T-T-ATACATTCGA--AAATTAAATGCTT-A-G---AGTTTTC--G---AT-TTT------ATC-CAAACA----AT-TGGAACATTT-GGGGGATGCAT-----GTTTCC--A--TTTGCTT-AGAGATAA----ATTACA-A---CA-G-AGCAAATTC-AGA--AGTTTAAAATTAAATTCCGCAAttcaataggtttaataccattttcatccactatatcaaattcatctcaaataaagtttgt
gi|9 : CCAA-TAA-A--A--ATATGT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--TTT---TGAGG--T--TAT--T-CCCATA---CATGT-TTT----AC--A---TAT-T-TTAAC-ATGAT-AAAT--AATGTTC-A-T---TGTCCTC--A-ATAG-TTT------CTC-TACATA----AT-T--CACATTT-GTCTGATTCAT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTACT-AGTGGA-G-ATT--ATTG-AGT--ATTTTAAAATTAAATCCTGCAACC--TTTTTT-CATA-CAT-----ATTTACAATTTTG-TTTTTGTAAA---TAGTTT-TCCA-GCCAATCTTATCAATTTATT--T-AAAGTTC-----Tttg
blockSeqs : ATTTA C CTTA AT . A G C T TA A C G T T AAG T T ACA G T . T . G T T A AAAT C AG C T G G T . . A A A . A . . TAT . T A T G AG AACATGCTA T C C A C AA TG C G CT TT G AAT TT GG TG C AA T GT G GCTATA T AAAATACC TGA G CGA T AAAT AT GC A GAT . CT TT AGA . TTA . TC TTTT G CATA AATT A . T C TT TA C A . TT CAAATAT . A . . GG G . GGCCGGA . T T TAGTGGAGATT . AA T T CC . TTACA ACAATTTTG A T C . T G TC TT GTCA . T AA G GAAAGCG . CG G . . GCTAA . CT A G . . . . TT . . . TC . A G . A . T . CACGATG A T T CTTT A . GG . AT GCT TGTC GACTTTTGGTA T . TC A AA
blockSeqs : AAA . TT . . . . C . . . . . . . . . . . A . . . . G . T . ACAT . T . A G . . . . . . . . . . . . . . A . . . G . . . . . . . . . . T . A G TC . . G . . . G A CTA A . AT T GAA . . . T . . T C . T . TC TTC . . ATA . . T A A T C G . T ACCATA . . . . . C . GG . T . ATAGGATATT . . C T C . . GG T T T . . A T . CAA . T . . T . . . . . TA . T . G . . . . T . . . . . A . . A . A . CA A G . CTT C . . . TT . C ATATACAA . . G . .
blockSeqs : TAA . TT . . . . G . . . . . . . . . . . T . . . . T . T . CAT . A . T G . . . . . . . . . . . . . . A . . . A . . . . . . . . . . T . A . . . . . . . . . T CT C . AT T GA . . . T . . T G . T . TC C . . A . . T C A T C A . T AACAT . . . . . T . AT . A . ACAGGCGATT . . T T A . . . T T T . . A T . TA . A . . T . . . . . CA . T . . . . . . T . . . . . . . . . . A . . A G . CTT T . . . TA . C ATA . . . . .
blockSeqs : AG . TT . . . . T . . . . . . . . . . . G . . . . G . T . CAT . T . T A . . . . . . . . . . . . . . A . . . A . . . . . . . . . . T . A . . . . . . . . . . AT A . AT C CT . . . T . . T T . T . TT C . . T . . T C A T T G . G AATAG . . . . . T . AT . T . AACAGAGCAA . . T . C . . . . . . . . T T . TA . T . . . . . . . . . TT . C ATA . . . . .
blockSeqs : TA . T . . . . C . . . . . . . . . . . G . . . . A . C . ACT . T . T A . . . . . . . . . . . . . . A . . . A . . . . A . . . . . . . . . . T . AA T AA . . . A . . A T . T . T C . . A . . A C A T . G . T GAT . . . . . T . AT . T . AAGGA . . C . . . . . . . C . . . . . . .
blockSeqs : AA . T . . . . T . . . . . . . . . . . G . . . . G . T . AC . T . T A . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . T . . T T . . . C . . . A . . T A A . . . . . . . . . . . . . AT . T . . . . T
blockSeqs : . . . . . . . C . . . . . . . . . . . G . . . . G . . . GC . T . . G . . . . . . . . . . . . . . . . . . . . A . . . . A . . G . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . . . T . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqCons : ACAT*** T******* *** ** ****** *** AT**** T* AA***** T*** **** *** T** *** T**** ** A***** T* A* T**** AATAT**** ****** **** ** ACAGGAGATT****** ********** T** CA*** ***** ** *** ***** *** TT C***** ATA*************
originalCons : TTTTTAAA-A---A-T-GTTTTTT--A--TTCA-TA-TT-TCAATTTGCCC-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TATAAC-AATAAA-A--C--ATTA-A-------TGCA---TGTACATGTATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATAT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTAG-----GGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--NTAT-AAA--A--TCCAA-TAA-A--A--AT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--NTT---TGAGG--T--TAT--TTCCCATA---CATGT-TTT----AC--A---T-T-T-TTACA-ACGAT-AAATCAAGTGTTT-A-T---TGTCTTC--A-ACAT-TTT------CTC-TACATA----AT-T--CACATTT-GTCTGATTCGT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTACA-A---GG-G-ATT--ATTG-AGT--ATTTTAAAATTAAATTCCGCAACCTTTTTTTT-CATA-CAT-----ATTT----------TTTTTGTAAA--TTAGTTC-CCAA-GANAAT-TTATCAA--TATT--T-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ACAA-AAATTT--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCGTGA------AAATTC-----GCATGTC-TTAG----C-TT--TTAAATA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
finalCons : TTTTTAAA-A---A-T-GTTTTTT--A--TTCA-TA-TT-TCAATTTGCCC-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TATAAC-AATAAAACAT---ATTA-AT-------GCA---TGTACATGTATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATAT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTAG-----GGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--NTAT-AAAAT----CCAAT-AAAA-----AT--GT--TTCC-ATTTT---ATAT----CAAA---TTTGGT--AAT--NTT---TGAGGT----TAT--TTCCCATA---CATGT-TTT----ACA-----T-T-TT-TACAA-CGAT-AAATCAAGTGTTT-AT----TGTCTTCAATAT----TTT------CTC-TACATA----AT-T--CACATTT-GTCTGATTCGT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTACACAGGAGATT------ATTG-AGT--ATTTTAAAATTAAATTCCGCAACCTTTTTTTT-CATA-CAT-----ATTT----------TTTTTGTAAAT--TAGTTC-CCAA-GANAAT-TTATCAA--TATTCA---AAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ACAA-AAATTT--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCGTGA------AAATTC-----GCATGTC-TTAG----C-TT--TTAAATA-ATA--TTACT---CATAATTTTA---TACTC-----GCATA-------------AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
Alignments
lowQualScore : 1111111 1111 111 222222 222222222 11 11 111 11 11 11 444444 222222222 111 111111 1111111 1111 111 111 11111 222222 1111 111111 11111 2222222 1111111 1111 1111111 22222222222 11111 666666666666 111 11 22222 11111 11 1 4444444444 1 11 1 11 1 22222 1 11 1 1 1 111 11111 11 1 1 1 111 222222 2222222 1 2222222222 1 11 111 111 111111 3333333333333333 11 11
lowQualScore : 1111111 5 6666 66 4 4 4 5 3 55 3 3 7 3 3 666 3 3 666 2 7 3 3 3 7 3 4 2 777 2 88 777 4 000 3 4 4 4 4 4 4 4 4 4 66 4 000000 777 4 3 5 0 5 66 000000000 5 6 6 8 0 8 0 11 11 8 0 8 99 99 5 222 33 55 99 6 55 6 99 6 000000 6 0 555555555 000 6 222222 55 9999999 77 77 5 8888 2222 777 666 888 000 0 00000 77 33 000000 5 0000 444444 5 5 55 2 55 88 3 1 5 77777 1111111 1 4444444 2222 5 77 3 5 8888888 00 66 3 5 88888888888 5 66 1 7 77 6 66666 666666666666 0 111 9 6 6 1 00 99 55555 66666 1 99 0 3333333333 0 33 0 33 0 11111 0 33 0 2 0 0 0 8 0 8 88 111 6 66666 33 0 3 0 0 3 777 4 888888 7777777 3 2 0 3333333333 1 0 11 444 0 77 444 555555 6666666666666666 8 8 0 99 8 11
lowQualScore : ....... . .... .. . . . . . .. . . . . . ... . . ... . . . . . . . . . ... . .. ... . ... . . . . . . . . . . .. . ...... ... . . . . . .. ......... . . . . . . . .. .. . . . .. .. . ... .. .. .. . .. . .. . ...... . . ......... ... . ...... .. ....... .. .. . .... .... ... ... ... ... . ..... .. .. ...... . .... ...... . . .. . .. .. . . . ..... ....... . ....... .... . .. . . ....... .. .. . . ........... . .. . . .. . ..... ............ . ... . . . . .. .. ..... ..... . .. . .......... . .. . .. . ..... . .. . . . . . . . . .. ... . ..... .. . . . . . ... . ...... ....... . . . .......... . . .. ... . .. ... ...... ................ . . . .. . ..
lowQualScore : 9999999 0 9999 11 4 0 0 7 6 00 6 6 3 6 6 444 6 6 444 8 3 6 6 6 4 6 7 2 000 6 77 888 4 999 7 4 4 4 4 4 4 4 4 4 11 4 666666 888 4 2 0 1 0 99 999999999 7 7 7 0 8 0 8 00 00 0 8 0 22 66 7 999 66 77 22 7 88 7 22 7 000000 0 8 222222222 222 7 888888 99 6666666 99 99 7 3333 1111 999 111 999 000 7 11111 99 44 999999 0 6666 999999 0 0 44 5 44 22 0 7 7 11111 6666666 3 6666666 1111 7 99 6 7 6666666 66 99 6 0 11111111111 0 99 4 3 77 7 77777 888888888888 8 888 0 7 7 0 22 22 33333 77777 4 00 0 2222222222 0 88 0 88 0 88888 0 22 0 5 0 0 6 0 8 0 88 777 7 77777 88 0 2 0 0 2 555 2 888888 8888888 2 5 0 0000000000 2 0 00 000 8 00 000 000000 0000000000000000 0 0 8 00 0 00
consensus : TTTTTAAA-A---A-T-GTTTTTT--A--TTCA-TA-TT-TCAATTTGCCC-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TATAACAATAAAACAT---ATNAA-TGC---A-TG--TACATGTATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATAT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTAG-----GGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--NTAT-AAA--A--TCCAA-TAA-A--A--AT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--NTT---TGAGG--T--TAT--TTCCCATA--C---ATGT-TTT----AC--A---T-T-T-TTACA-ACGAT-AAATCAAGTGTTT-A-T---TGTCTTC--A--ATATTTT------CTCTACATA----AT-T--CACATTT-GTCTGATTCGT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTAC-ANAGGANATTATTG-AGT--ATTTTAAAATTAAATTCCGCAACCTTTTTTTTC-ATA-CAT-----ATTT----------TTTTTGTAAA--TTAGTTC-CCAA-GANAAT-TTATCAA--TATT--T-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ACAA-AAATTT--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCGTGA------AAATTC-----GCATGTC-TTAG----C-TT--TTAAATA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
Reference ( family-4547 ) : TTTTTAAA-A---A-T-GTTTTTT--A--TTCA-TA-TT-TCAATTTGCCC-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TATAACAATAAAACAT---ATTAA-TGC---A-TG--TACATGTATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATAT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTAG-----GGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--NTAT-AAA--A--TCCAA-TAA-A--A--AT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--NTT---TGAGG--T--TAT--TTCCCATA--C---ATGT-TTT----AC--A---T-T-T-TTACA-ACGAT-AAATCAAGTGTTT-A-T---TGTCTTC--A--ATATTTT------CTCTACATA----AT-T--CACATTT-GTCTGATTCGT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTAC-ACAGGAGATTATTG-AGT--ATTTTAAAATTAAATTCCGCAACCTTTTTTTTC-ATA-CAT-----ATTT----------TTTTTGTAAA--TTAGTTC-CCAA-GANAAT-TTATCAA--TATT--C-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ACAA-AAATTT--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCGTGA------AAATTC-----GCATGTC-TTAG----C-TT--TTAAATA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
gi|1 : TTTTTATA-A---A-T-GTTTTTT--A--TTCAATA-TT-TCAATTTGCCC-TT---CAA-T-GTAT-CA-A---G-A-CAC---TCGGAGTGCATAG-TCTATGA-GATAAAAATAAAACATTAAATAAA-GGCGCAA-TGTATACATCTAT--ACATAATTT-CATTCAGCAAT-GCA-TAA-CTGCA-TCTTATTTCGACACATCAAGAAATTTTCTAT-G-CAT-TTATATGTAAC-TT--T---TA--------TAC-CAA
gi|1 : ttTTTTTGGTTGTTTGAA--CTAT-AAA--ACATCCAAATAA-AGCA--AT--TG--TTCC-GTTT--TCATATGATTCAAACATTTTGG-TTAAT--GTTGTGTGAGAGTT--TATAATATCCATA--G---ATGT-TTT----ACC-A---T-TGTGTTACA--TGAT-AAATCA-GTGTTTTA-TCGATGTCTTC--AT-ACAGTGTGGTGTACTCTACATATAATATAT--CACATTTTGTCTGATTCTC-----TTTTCTTAAATTTTTCCTGAAAAGAGA-TTTGTT----CAATACGTCAGTGTGGT--ATTTTGAAATTAAA-TCTGTAA-CTTTTTTTTT-ATAGCAT-----ATTTTTAATTTTGGTTTTTGTAAATTTTAGATCTCCAA-GAAAAA-TGTTCAA--TATT--T--ATGTTCTTCCTTACAAAAC-GGATTGGT-ATA------TATGGGGTTTAATGA--AATTTCTTTT-TCTAACAACAAATTT--T--TATCA--CG-TTTTCGATGGATAATATCAGCTTTTTTCAATAGGA-TTTGTCTCTCATTAGATGGAGAATGATTTctgcacgcaattctattcgacccatgtaatatagccttttctgtgaggagtaattcttactctcactatcttaggcagtatttgcgggcaaatattctatcatcatagcttagtgctactataaaatagctcacgcttatgtaagacagaatgttaaagttactttgtgtgctaaaacttgttctaatttgactctttttggttgtttgaactataaaacatccaaataaagcaattgttccgttttcatatgattcaaacattttggttaatgttgtgtgagagtttataatatccatagatgttttaccattgtgttacatgataaatcagtgttttatcgatgtcttcatacagtgtggtgtactctacatataatatatcacattttgtctgattctcttttcttaaatttttcctgaaaagagatttgttcaatacgtcagtgtggtattttgaaattaaatctgtaactttttttttatagcatatttttaattttggtttttgtaaattttagatctccaagaaaaatgttcaatatttatgttcttccttacaaaacggattggtatatatggggtttaatgaaatttctttttctaacaacaaatttttatcacgttttcgatggataatatcagcttttttcaataggatttgtctctcattagatggagaatgatttatttaaatacattga
gi|10 : tttttttataaatgttttttattcaatatttcaatttgcccttcaatgtatcaagacactcggagtgcatagtctatgagataaaaataaaacattaaataaaggcgcaatgtatacatctatacataatttcattcagcaatgcataactgcatcttatttcgacacatcaagaaattttctatgcatttatatgtaacttttataccaactgcacgcaattctattcgacccatgtaatatagccttttctgtgaggagtaattcttactctcactatcttaggcagtatttgcgggcaaatattctatcatcatagcttagtgctactataaaatagctcacgcttatgtaagacagaatgttaaagttactttgtgtgctaaaacttgttctaatttgactcTAAA-A---G-G-GTTTT----A--TTCA-TA-TT-TCAATTTGCCC-TT--ATAA-T-GT-T-CTTA---G-A-CAC---TCGG-GTGCAT-G-TCT-TGA-TA--ACAATAAAAAAT---ATGAA-TGC---A-TG--TATATGTATC-ACATAA----CA-TCA-TAAT-GCA-TTA-CTG-A-TGT--TTTCTA-ACAT------ATTAT---T-AAAAT-CTATATGTAAC-CT--TTTATG--------TAC-AAGTG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGTAG-ATATAT--TT--TTGGCACTTTCTT-CAATGTCCTT-GATTC--TGCAA-CA-CATCTTA--TATTTGA--AAAT--atttaaatacattga
gi|11 : AG-TA-CATCTTA--TATTTGTTTAAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTA------AGCTGTTCAAAATGA------CA-ATTCTCTGGTTGTTTTCATGATATGAAA--A--TTTAA----------------T--TACC-ATTTGAT-ATGT----C-AA---TTTGA-T-AAG--CTT---TGATG--TTATAT--TTCCCATA--C---ATAC-TTT----AC--A---T-T-T----CA-ACCA-------AAGTATTT-A--------------------------------------A----AA-T--CA-AGTT-ATCTGATTCGG-----TTTTCTTTG--TTTTCCTGAGAAATAA-TTTGTGAC-AGAAAATATCACTG-A--------TAAAGTT-GATTC
gi|12 : TGT-TTC----AC--T---T-G-T-TCAAA-ACAAT-AAATCAAGTGTTT-A-T---TGCCTCC--ACCATATTTC------TTATACACA----AT-T--CACACAT-GCCTGAGTCGGCCGGATTTTCTGTA--TTTTCCCGAGAAG-GATTTTGTTAC-----------ATTG-AGTAAAGTTTGAATTTAAATCCTGCAACC----------------C-----ATCT----------TATCTG-AAA--TGAACTC-C--A-GAGGA--TTATTAT--CATT--CAAAAGTTC-----TTTTATA--GAA
gi|13 : TTTTTAA--------TCGTTTCTT--AATTTCA-TA-TT-T--ATTTGCCC-TT--ACAAAT-GT-TTCA-A---GTA-CAC---TCAGTGCGCAT-G-TCT-TGA-TA--ACACTA---CAT---ATTAA--GC---A-GG---ACAT--ATC-A-ATA--TT-CA-TGA-TAAT--CA-TTA-CTG-AATTT--TTTCGA-AC-T------ATTAT---TTGAAGTTCTATATGTAAC-CT--TTTAT
gi|14 : tT---TTCCA-TAGATG-----T-ATTTCAAAATTGAGTTT--TATAGCTCAAGT-TTTGACTAGGGTAAAGTGCTGTGATTTTAGAAATAC-----GC-------TAGAACAC-TGCATAAAATATGTA--TTATTGCACACAA--TCA---CACT---CTATC--------ACAC----AAAT-ATTTCTTTGTTTCTCT-ATA--TTGT-AG--TAAAACTAg
gi|15 : A--TTTCT---CATACATCTAGCTTACTTGTC--GC--------ATATACAAAAATTGTTTCTTT-ATCTTCTAAGATCTCATACGAATAAAACCA
gi|16 : -TT-TCAGTTTGCCT-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCTG-GCACAT-G-TCT-T---TATAACAATAAAACAT---ATCAA-AGC---A-TG--AACATGTATC-ACATAATTT-CC-TCA-TAAA-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-ttcaatacggttttacatctctaccatttttcatccacaatattccaactaacataattcaaaaaccagctcgt
gi|17 : A-TGC---A-TG--TACATGTATC-ACATAATTT-CA-TCT-TAAT-GCA-TTA-CTG-A-TTT--TTTCTA-ACAT------ATTAT---T-G--AT-CTATATGTAAC-CT--TTTATA--------TAC-AAGTG-AG-TACATCCTTAA
gi|18 : CAT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TCTGTTAC-ATAGGATATTATTG-AGT--ATCTTAAAATTAAATTCCGCAACCTTTTTTTTC-ATA-CAT-----ATTT----------
gi|19 : TTTTTAAA-T---A-T-GTTTTTT--A--TTCA-TA-TT-TGA--TTGCCCTTT--ACAA-T-GT-T-CA-C---G-ATCAC---TC-G-GCGCAT-GTTCT-CTATTCTAACAAATAAACAT---acaat
gi|2 : TTTTTAAA-A---A-T-GTTTT----A--TTCA-TA-TT-TTAATTTGTCC-TT--GCAA-T-GT-T-CA-A---G-A-CAC---TCGG-GCGCAT-G-TCA-TGA-TATAACAATAAAGCAT-----TAA-TGC---A-TG--TACATATATC-ACATAATTT-CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-GAAAT-CGATATGTAAC-CT--TTTATA--------TAC-CATTG-AG-TACATCCTTAAA-GAAGCTTTAACATGAGCAG-ATATGT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTC--TACAA-TA-CATCTTA--TATTTGT--AAAT--AACAGTT--G-T--TA-TA--GCAAA-AATTAGCTATAGGTTATTCAAAATGT------CT-ATTTTTTGGTTGTTTTCA--ATAT-AAA--A--TCCAA-TAA-G--A--AT--GT--TTCT-ATTT--T-ATGT----CAAA---CTTGG-T-AAT--GTT---TGAGG--T--TAT--TTCCCATA--TTTTATGT-TTT----AC--A---T-T-T-TTACA-ATGAT-AAATCAAGTATTC-A-T---TGTCTTC--A--ACATTTT------CTCTACATA----AT-T--CACATTT-GTCTGATTCAT-----TGTTCTTAA--TTTTCCTGAGAAAAGA-TTTGTTAC-ACAGGCGATTATTG-AGT--ATTTTAAAATTAAATTCTGCAACCTTTTTTTTCCATA-CAT-----ATTT---------------GTAAA--TTAGTCC-CCAA-GAAAAT-TTATCAA--TATT--T-AAAGTTC-----TATTAAA--GGATTGGT-ATA------T---GGGTTT-ATGA--AATTTCTTTT-TC--ATAA-AAATTA--T-ATA-CA-TCG-TTTTCGAT-GAT-ATATCAG-TTATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTTCAAAATTGAGTTT--CATA-CGCAAGT-TTTGA-TATGGTAAA---TCTTGA------AAATTC-----ACATTTC-TTAG----C-TT--TTAAAAA-ATA--TTACT---CATAATTTTG---AATT---C--GC--------ATA-----AAAT-GTTTCCTT-TTCTTCTAAGA--TTAT-CG--TAAAACCAtat
gi|20 : TTTT--A--TTCG-TA-TT-TCAATTTGTCC-TT--ACAA-T-GT-T-CA-A---G-A-TAC---TCGG-GCGCAT-G-TCT-TAA-TA
gi|21 : ttttatgTTGCCC-TT--ACAA-T-GT-T-CA-C---G-A-CAC---TCGG-GCGCAT-G-TCT-TGA-TCTAACAAATAAACAT---ATTAA-
gi|22 : ATAAG-TCATTTCAAT-GGA-TTT---TTTCA-TAGATG-----TGATTc
gi|3 : TTT------CTCTACATA----AT-T--CACA-TT-GTCC--TTTG------ATTTCTTAA--TTTT-CTGAG-AATTA-TTTGGTAC-A-AGGA----ATTG-AAT--ATTT--GAATTAAATTCTGC-ACCTTTTTTTCA-ATA-CATTTACAATTTGG--------TTTTTGTAAA--TTGG-TC-TCAA-GAAAAT-CTATCAA--T-TT-----AAGTTC-----TATAAAA--GGATTGGTGATAGAAAGCG---GGGTTT-ATGACGATTTTCTTTTGTT--ACAA-AAACTTGCTAATA-CACTCGATTTTC-AT-GAT-ATAAAAA-CGATC---AT-AAA---A---TTTCA-TAGATG-----TGATTTCAAAACTGAGTTTTCCATA-CGC-AGTGTTGGA-TAGGAT-AA---TCATGA------AAATTCACGATGTATGTCTTTCG----CTTT--TTAAACA-ATAGGTTACT---C-TAATATTG---TACT---C--GCGACTTTTGGTA-----CTTT-GTTTCTTT-TTCTTCTAAGAG-TTAT-TG--CAAAATC
gi|4 : TTTTTAAA-A---AAT-GTTTTT---A--TTCA-TA-TT-TTAAATTGCCA-TT--ACAA-T-GT-T-CA-A---G-A-CAC---TCGG-ACGCAC-G-TCT-T------------------T---TTGCA-TGT---ACTG--TACATATATT-ACATAATTT-CA-TCA-CAAT-GCA-TTA-CTG-A-TTT--TTTCGA-ACAT------ATTAT---T-TAAAT-CTATATGTAAC-CT--TTTATA--------TAC-CAATG-AG-TACATCTGTAAA-GAAGCTTTAACATGAGCAG-ATATGT--TT--TTGGTACTTTCCT-CAATGTCCTT-GATTCCTCACAA-TAGCATCTT---TATTTGT--AAA---ATCAGTTTGG-CG-TA-TAGTGTAGAGAATTAG-----GTTTA-TCAAAATGT------CTAATTTGTTTGTTG-TTTCA--CTAT-AAACGA---CCAA-TAAGA--A--AT--GT--TTCCAAGTT--T-ATA-----CAAACT-TCTGATT-AAT--TTT---T-AGG--T--TAT--TT-TCATATTC---ATATGTTT----AC--AATTT-T-T-TTA-A-ATGATAAAATCAAGT-TTT-ATT---TGTCTTCCAA--ATATTTT------TTcttcaaagtattatacacaataacaaattacatatctgaa
gi|5 : tTTTAAATA---A-T-GTTTTT---A--T-CA-TA-TT-T-AATTTGCCC-TT--A-AA-T-GT-T-CA-A---G-A-CAC------------AT-G-TCT-TGA-TACAA--ATAAA-CAT---ATTAA-TGC---A-TG--TACATATATC-ACATAATT--CA-TCA-TAAT-GCA-TTA-CTG-A-TTT--GTTCGA-ACAT------ATTAT---T-GAATT-CTAT-TGTAAC-CT--TTTAT---------TAC-CAATG-A----TATCATTTAA-GA-GCTTTAACATGAGCAG-A-ATAT--TT--TCGGTACTTTCCT-CA-CGTCCTT-GATTC--TACAA--A-CATCTT---TATTTGT--AAAT--AACAGTT--G-C--TA-TA--GTAGA-AATTA------GGTTAATCAAAATAT------AT-ATTTTTTGGTTGTTTTAC--ATA--AAA--A--TCCAA-TAA-A--AATAT--GT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--TTT---TGAGG--T--TAT--TTCCCATA--C---ATGT-TTT----ACATA---T-T-T-TTACA-ATGAT-AAAt
gi|6 : TTCAAA-ATTTA-T-GTTTTCTTAA--TTCA-TAATTGTCAGTTTGCCG-TTTAACAA-TCGTGT-CA-AAAGG-A-CATACATCTG-GAACAT-G-TCT-T-A-TATAACAATAAAAC-T---ATCAAAGGC---A-TG---ACATGTATCGACATAATTTTCC-TC--TAAGAGCAATTAACTG-A-TTT--TTTCGA-ACATTAT---GTTAT---T-GAAAT-A-ATATG-AACGCTAGTTCATAACATGCTATACTCAATGCAGCTACATCCTTAAAAGAAGCTTCAACATGAGCAGCATGTATAATTTGTTGGTATTTTCTTCCAATGTCCTTGGATTC--TGCAATTA-CATCTTAATTATTTGTG-AAATGGAACAGTT--GCC--TATTA--GTAGA-GA
gi|7 : -CCAATGATAAT-TTCTCTA--CATTGTC-ATACTAC-----TATTAAAAAGGATTGGT-ATA------T---GGGTTT-ATGC--AATTTCTTTT-TT--ACAA-AAATTT--C-ATA-CA-TCG-TTTTCGAT-GAT-ATATAAG-TTATTTCAAT-GGATTTT---TTTCA-TCGATA-----TGATTTCAAAATTGAGCTT--CATA-CGCAAGT-TTTGA-TAGGGTAAA---TCATGA------AAATT-------CATGTC-TTAG----C-TT--TTTGATA-ATA--TTACT---CATAATTTTA---TACT---C--GC--------ATA-----AAAT-GTTTCTTT-TTCTTCTAAGA--TTAT-CG--TAAAACCA
gi|8 : ATTA--TACAG-AA-CATTTTA--TATTTGT--AGATTCTGCA--T--G-CAACA-TA--ATATA-A--TA------AATTATTCAAAA-GTAAAATACC-ACTTTGTTGTTATTTTCA--TAGT-AGA--A--ACCCA-CAA-C--T--AT--GTGCTTCC-ATTG--A-ATTT----CAAA---GTTTA-A-AATAGATT---CTAG------TGT--TTTCCAAA---------T-TTTCATAAC--A---T-T-T-ATACATTCGA--AAATTAAATGCTT-A-G---AGTTTTC--G----ATTTT------ATCCAAACA----AT-TGGAACATTT-GGGGGATGCAT-----GTTTCC--A--TTTGCTT-AGAGATAA-ATTACAAC-AGAGCAA---ATTC-AGA--AGTTTAAAATTAAATTCCGCAAttcaataggtttaataccattttcatccactatatcaaattcatctcaaataaagtttgt
gi|9 : CCAA-TAA-A--A--ATATGT--TTCC-ATTT--T-ATAT----CAAA---TTTGG-T-AAT--TTT---TGAGG--T--TAT--T-CCCATA--C---ATGT-TTT----AC--A---TAT-T-TTAAC-ATGAT-AAAT--AATGTTC-A-T---TGTCCTC--A--ATAGTTT------CTCTACATA----AT-T--CACATTT-GTCTGATTCAT-----TTTTCTTAA--TTTTCCTGAGAAATGA-TTTGTTACTAGTGGAGATTATTG-AGT--ATTTTAAAATTAAATCCTGCAACC--TTTTTTC-ATA-CAT-----ATTTACAATTTTG-TTTTTGTAAA---TAGTTT-TCCA-GCCAATCTTATCAATTTATT--T-AAAGTTC-----Tttg