lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222
lowQualScore : 1 11111 11 11 1 111 222222 111 222222222222 11 444444444444444444444 222 33333 11 1 1 5555 1111111 55 1 2 22222222222 2 1 11 1 1 3333333333 11 4 222 11 11 1 4 1 1 1 4 333 1 11 4444444 2222 1 11 22 11 3333 1 44 1 44444444 2 111 1 222 1 1 2 1 11 4444444444 6666666666666666666666 4 1 333 55 4444 333333333 22 555555555 1 11 66666666 1 1 3333333333333 7777777777777777777 11111 1 2222222 555555555555555555555555 1 1 11111 11 44444444444 1 11 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 222 1 2222 11 2222222222 11 1 111 1 2222 1 2 2 1111 22222 7777 222222 111 44444444 1 9999999999999999999999999999999 1 4444 1 11 2 22222 666666666666666 11 11 222 111 22 1 1 666666666666666666666666666666 2222 22 1 11 1 11 1 1 22222 11 33333 11 1 22 1 33 2 6666 444 1 33 1 1 22
lowQualScore : 4 6 6 6 6 2 8 22222 8 11 11 6 444 000000 1 8 55 000 0 333333333333 7 44 444444444444444444444 000 00000 0 6 11 99 88 8 8 8 8 0 9 0 0 8888 7777777 0 8 55 8 0 0 3 6 55555555555 3 3 7 55 3 6 1111111111 7 7 88 7 0 555 3 33 99 9 11 0 0 0 3 6 6 3 3 0 111 3 88 5555555 7 7777 3 88 00 44 5555 3 11 3 88888888 7 3 7 111 0 1 555 3 3 6 6 3 88 4 1111111111 3333333333333333333333 0 2 2 5 555 6 55 2 5555 2 4 888888888 2 77 222222222 5 7 88 33333333 6 7 3 3 5555555555555 4444444444444444444 77777 0 2 4 7 1111111 3 3 444444444444444444444444 0 2 2 0 3 44444 33 2 00000000000 2 0 44 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 555 6 6 8888 88 8888888888 00 0 777 3 0000 3 6 7 3 2222 6 55555 7 6 5555 0 888888 3 6 777 3 7 88888888 2 6 5555555555555555555555555555555 7 4 4 5 3 8888 2 88 3 6 7 5 2 2 22222 999999999999999 4 3 33 99 3 777 777 7 8 00 88 3 3 888888888888888888888888888888 3333 00 3 7 88 7 3 88 6 3 3 99999 44 44444 44 3 77 5 55 0 6 3333 2 333 6 1 3 00 5 5 77
lowQualScore : . . . . . . . ..... . .. .. . ... ...... . . .. ... . ............ . .. ..................... ... ..... . . .. .. .. . . . . . . . . .... ....... . . .. . . . . . ........... . . . .. . . .......... . . .. . . ... . .. .. . .. . . . . . . . . . ... . .. ....... . .... . .. .. .. .... . .. . ........ . . . ... . . ... . . . . . .. . .......... ...................... . . . . ... . .. . .... . . ......... . .. ......... . . .. ........ . . . . ............. ................... ..... . . . . ....... . . ........................ . . . . . ..... .. . ........... . . .. . ..................................................................................................................................................................................................................... . ... . . .... .. .......... .. . ... . .... . . . . .... . ..... . . .... . ...... . . ... . . ........ . . ............................... . . . . . .... . .. . . . . . . ..... ............... . . .. .. . ... ... . . .. .. . . .............................. .... .. . . .. . . .. . . . ..... .. ..... .. . .. . .. . . .... . ... . . . .. . . ..
lowQualScore : 0 7 7 7 7 3 0 00000 0 00 00 0 000 888888 4 0 88 000 6 666666666666 0 00 000000000000000000000 000 44444 8 4 00 00 88 0 0 0 0 8 2 0 0 8888 8888888 8 0 00 0 8 0 2 7 33333333333 7 3 3 77 3 0 0000000000 3 3 33 3 0 888 2 88 55 8 22 8 0 0 3 7 7 3 3 0 000 3 33 3333333 3 0000 3 33 00 00 7777 3 00 3 77777777 3 2 8 000 0 2 777 3 3 7 7 3 33 0 0000000000 5555555555555555555555 0 5 5 0 000 0 00 5 5555 5 0 000000000 5 55 555555555 5 3 33 33333333 7 7 3 3 3333333333333 3333333333333333333 00000 0 5 0 8 2222222 2 0 222222222222222222222222 0 5 0 5 2 88888 88 5 55555555555 5 0 55 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 777 7 0 3333 88 0000000000 22 0 777 3 7777 3 7 3 7 0000 7 33333 3 7 0000 2 888888 2 7 777 7 3 33333333 3 7 0000000000000000000000000000000 3 0 0 0 0 0000 0 33 7 7 5 0 5 5 88888 000000000000000 5 2 88 88 0 333 777 3 3 33 00 3 3 888888888888888888888888888888 3333 00 3 3 33 3 3 33 7 3 3 00000 00 33333 00 3 33 0 55 0 0 0000 5 000 0 5 0 00 5 0 55
consensus : AGAANTCACAAGAATGA-CACAG-T-CC-GTGCAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATANTTNA-CGTTGCT-G--AA----ATACAACGNTA-ATTGT--------TTA-TGAC-GTTATTGTTTAT-GACGTCATGAACGTCACAATCCTCCGTG--TTGAGT-AT-AA-CGT-CA-CAATTATTACT-TCT-GGTAGG-CATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGACAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTT-ATAA-AGAAGTCCTCCTTTGATAA-ACGCGCTA-TTC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAATTTT-GAATTTTCCTTTGCC--ACATTCGG--CAAAATGTTGACTGCAANGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTG-TTTATGCACTCGAACTC-T-GCG-ATGA--GTCTT--C--G-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACGATATATC-AAATTTT-NA---T-TTTGCAATTCATATTGGCGTTT-GGTG-T-GA-TTTCCTTCCGGTTTTT--AATA-CGACG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGGTCTCCNCATTTGGAAATGTGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGTGGGTAAGTATTC-TTTTAANGTTNGGCGCTTGCCTTCTGCTATCTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTNAGACTGTTCGCTAANATNGGNAAAAAATAAACGTTCTGAGCGGTCCCNANGATGTTGTGGTTTCTTGGGTT--GTGG-TAAC-GACCAGCGGAATNTTT-CTGT-TTACAGT-CATTANNNTTCTTCGT---G-------TTTC---CCCGTAT-TNT-GA-TNTNGGNATG-TCCANTGCTTTTNT-GA-ACCG-NCATTN-----AT-GAGGT-TNTCTGGATAATGTTGTCTTTTA--ANGTACNCCGTCA---ATTCNT-CCANTCNTTTAGACCGTAGT-GAAGTA----TCANA-A---ACTACAG-GCA---T--ATCGGTCT-GGNCANGTTGNATGGN--A--TGTT-ACG-TTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACCGA-----TGTGTATCC---GTC-CTCTT-C-AAAATACGTC-GC-CTT---ATTTCG-TT--CCAT-CTTTATNA--TTAGT-CGTCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-T-GAATTT-AATCGATTCGTGT-AAATTGTTC-AACAGAGTATG-AATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTNTTGAAAT--------ATACTGAACAGAATTTTC-ATCAAA---TTTT--GGTAGCTGGC-ATACATTTTCTCCNCCAAANATCCCANTGCAAGNGT-GCGTAT--GTNGGTGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGG-AA-GATAATGTTNATCGTC--AAAA-TGNAAATG-A-TTG-T-TCTCAAGAAC-CAATTTTAA-TC-CTTCCCATAAATAAATCTTCTTTTGA---AAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTACGGCCTC-AAG--TCCTAAGTCGTGT-GG-AATATTC-GT--ATATAGACTTACCACATCC-A-AAACTGACTAGAGT-TGTTTCG-GTTTAACTGTTTTGGGCAATATGCATTAAGAAAATCCATATCATCCCCTTTGTAAAANCTGTTTAACAAATTNACANAGTGNCTTCAGTGAAATGTCTAGAAAATTACTAAGTCTTTGTGTACT
Reference ( gi|1 ) : AGAATTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGTTA-ATTGT--------TTA-TGAC-GTTATTGTTTAT-GACGTCATAAACGTCACAATCCTCCGTG--TTAAGT-AT-GA-CGT-CA-CAATTATTACT-TCT-GGT-C--CATTGAAAAAC-AGGAC-TGAC--TA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGTGCTAATTC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAATTTTTGAATTTTCCTTTGCA--ACATTCGG--CAAAATGTTGACTGCACGGGGTATT-GCGGA-GC-TGGCATCTCGAATC-TGTTG-TTTATG-ACTCGAACTC-T-GCG-ATGA--GTCTT--C--GTTTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTA---GGG-CATATAA-ACAATATATC-AAATTTT-CA---T-TTTGCAATTCATATTGGCGTTTTGGTG-T-GA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTT-AATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGTGGGTAAGTATTCTTTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATG---ATATAGAGGTGTTGAACAAGGTTT--CAGATTTTCAGATTGTT--C-AAGATTGGG---AAA--AACGTTTTG--CGGTCTTTATGAT-TTATGATTTCTTGGGTT--GTGG-TA---GACCAGCGGAATTTTT-CTGT-TTA-AGT-CATC-AGGTTTTTTGT---G-------TTTT---TCCGTAT-TCT-GA-TCTAGGAATG-TCCATTGCTTTTTTTGATACCA-GCATTT-----AT-AAGGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTAAACCGT-A---ATTCGT-CCATACGTTTAGATC-TAGTCCCAGTG----TCAGA-A---ACTATAGAGCA---T--ATCCGTCT-GGCTAGATTGAATGGT--A--TGTT-ACG-CTTGGT-ATG--TGCCGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-TCCTTGCAAAAATATGTCTGTACTT---ATTTC--TTCACCATTTTTTATGA--TTAGTACATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-T-GAATTT-AATCTATTCGTGT-AAATTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAA----GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAGAATTTTT--GGTAGCTGGCTATACATTTTCTCCTCCAAAAATCCCATTACAAGGGTCGCGTAT--GTGGGGGCTACTCTTAGTTCCCATTGCTGTTCCCTTTA---TCTGG-AAAGATAGTATTCCTTGTC--AAAA-TGAAAATG-G-TTG-T-TCTCAAGTAC-AAGTTTTAA-TC-CTTCTNNNNNNNNNNNNNNNNNNNNNNNNNAATATGAACTTTTTTG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACAT-C-A-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTGTGGG-AATATG-ATTAAGAAAATCTATATCATCCC--TAGTAAAACTTGTT--ATAGATTTACAAAGTGGGTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACTTGAAGAGGGTCCGGCAATAATTGGACGTAATTTAAGATCCATTGGTTTTTTGGATTTTAACGTACGTACTCCGGCAATTTTTGATACTTTCCTGGATTTGTTTTCATCTATGGATTTCTGGTACACCATAAAAATTACTAGTTTTCGCTTCAAAGCTAGTTAAAAAATCAAACTCATTGTTCGT
gi|3 : AGAATTCACAAGAAT-A-CACAG-T-CCCGT-CAATAAAAAC-TTGTAAGCGCTTT--C--G-CGCCATGTT--GGCTACTTCAGAC---AG---T--TTGTTTT-AGATAGTTAAGCGTTG-T-GTCAA----ATACAACGTTA-ATTGT--------TTACTGAC-GTT--TGTTTATCGACGTCATGA-CGTCATAATC-TCCATG--TTGAGT--T-GA-CGT-CAACAATTATTACT-TCTTGGT-AG-CATTGAAAA-C-AGG-C-TGACAATA-CAGTAATTAAAATCAGATAA-TCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTT-ATAATAAGAGTCCT---TTGATAACACGTGCTA-TTC---AT-CCTCCGTTCCACATTT-G--TAAA-GGGGAAAATTTT-GAATTTTCCTTTGCC--ACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGCATCTCGAATC-TGTTGTTTTATGCACTCGAACTCTT-GCGAATGA--GTCTTCCC--G-TTTGT--C-CATAT--GTA--AACTCTTT-CATGTA---GGG-TATATAGCACGATATATC-AAATTTT-TC---T-TTTGCAATTCATATTGGCG-TTTGGTG-T-GA-TTTCCTTCCGGTTTTT---ATA-TGATGTTTTTCCCCTTCTTCAATATACTC-ACACGTT--CCA
gi|7 : tataAGAAAACACAATAATGAACACAG-T-CT-GTGCAATAAAAAG-CTGTAAGCGCTTTTCC--GCC--CATGTTGGGGCTCCTTCAGACAGGAG---TGGTTGTATT-GAATACTTTA-CGGTGGT-G--AAAGACATACAACCATATATTGTAGGGACAATTA-T-----TT-TTGTTGATGGACGTC-T-GACATAACAATCCT-CGTGTTTTAGGTCATCAA-CGTCCA-CAA
gi|2 : tggacatgtctatgcgtactacggcaatgatcgtaatttgcggggaggattccttccaagatccggtttccattccatttgctctgcattaccgatttgtagtctggcctgacacctagtcttgcaccaaagtcctcattatattttcccaaagaatcatggttgggtacataaatagaaatatctttaaGAATTCACAAGAATGA-CACAGGT-CA-GT-CAATAAAAAA-CTGTAAGCGCTTC--CCCG-C--CATGTT--GGCT-CTTCAGAC---AAGTAT--TTGTTTTTGAATAGTTAA-CGTTGCTTG--AA----ATACAACCGTA-ATTGT--------TTA-TGACTGTTATTGTTTA--AACGTCATGA-CGTCACA--CCTCCGTG--T-GAGT-AT-GAACGT-CA-CAAT-ATTACTCTCT-GGT-AAGCATTGAAAACA-AGGACCTGACAATAACAGT--TTAAA-TAAGATAAATCATCTCACTTATAATTCAAGTTTTAGGGTTAAACAGTTT-ATAA-AGA-GTCCTCCTTTGATAA-ACGTGCTAATTCTGCCT-CT--CGT--CACATTTTGATCAAAAGGGGAAAATTTT-GAATTTCCCTTTGCGCCACATTCGGGGCAAGAGAATGACTGCAGCGGGTATT-GCGGACGCCTGGGAT-TCGAATCCTGTTG-TTTAAGCACTCGAAATC-TTGCG-ATGAACGTCTT--C--CGTTTGTACCACA-ATTCGTAAGAACTCTT-GCATGT----GGG-CATATAACACAATATATCTAAATTTTTCAACTT-TTTGGCATTCATATTGGCGTTT--GTGGT-GA-TTTTCCTTCGGTTTTTTAAATAATGACG-TTTTCCC-TTCTT-CATATACTCCACACGTTTTCCACATTGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTT-CCTTCTGCTATCTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTCGC-AAGATTGGGAAAAAA--AACGTTTTG--CGGTC--TATGATGTTA-GATTTC-TGGGTTTGGTGG-TAACGAACCAGC-GAATTTTTGCTGTCTTACAGTCCATTAAGGTTTTTTGTTGGG-------TTTTGCGCCCGTATATCT-GATTCTAGGAATG-TCCA-TGC-TTTTTTG--ACTATATATTTCTTAAATAAAGGTATGTTCCGGTAATGTTGCGTCCTACTATCCACACCGT-AACGATTCGTCCCATACGTTTAGACT-CAG-----GTG----TCAAATATTTACTAC-GAG-A---TGAATCAGTCT-GGATAGA-TGAATGGT--AGTCGTG-ACG-CTTGGT-AAAGCTGCGAGAT-GTGTATATATATATATATATTACC--AAATTAACTGAGATGGTG-GTATCCGCAGTC-CTCTTGC-AAAATATGTCTGTACTT---ATTTCG-TTCGCCATTTTTTAGAG--TTA-TACATCTG----AAAATGCGAAGTT-CGTTTTTCCATTATATTCCATTGG-T-GAATTA-AATCGATTCGTGT-AAATTGTTCAAACAGAGTATG-AATG-GT-TA-CTTTTTGATCTTTCC-TGAGTCCAAAAAAAATGAAACAATCATCGAGA------TATC-TTTCCAG-T-TAACTGAAAT--------ATA-TGAACAGAATTTTCAATCAAA---TTTT--GGTAGCTGGCTAT-CATTTTCTCCTCCAAAAAT-CCATTACAAGG---GCGTAT--GTGGGGGCTACT-TTAGTT-CCATTGCTGTTCCCTTTA----CTGG-AA--ATAGTATTCATTGTC--AAAA-TGAAAATG-G-TTGTT-TCTCAAGTACAAAG--TTAA-TCACTTC-------------------------AAATATGAACTCTTTTGAAAAAACGCTCACTTACTGGCATTCGAT-AATTTCTCCAACCAGAAAATTCTATGGCCTC-AAG--TCCTAAGTTGTGT-GGAAATATAT-GT--ATATAG-CTTACCACATCC-ACAAACTGA-TAGAAT-TGTCTCG---TTAACTGTTTTGGGCAATATGCATTAAGAAAATCCATATCATCCCCTTTGTAAAAGCTGTTTAACAAATTAACACAGTGGCTTC-GTAAAATGT-TAGAAAATTACTAAGTCTTTGTGTACT
gi|6 : tttataatGAAATCACAATAATGA-CACAG-T-CT-GTGCAATAAAAAAGCTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---G--TTGTATT-GAATACTTTA-CGTTGCT-G--AA----ATACAACGCTA-TTTGT--------TTA-TGAC-ATTATTGTTTAT-GACGTCAT-GACATAACAATCCTTCGTG--TAGATT-AT-AA-CGT-CA-CAATTATTACT-TTT-GGTAG--CATTG-GAAAC-AGGAC-TGACAATA-CAGCAATTA
gi|18 : agttatcgtacttacggcagatgatcgttaatttgcaggaaattccttccaagatcctttccattccatttgattctgctaccgatttagatctggtctgtgacatcctagtcttgcaccaaagttcaatatatattttccaaagaatatggtttggtacataaataaatattttaaaatGATTTCACAAGAATGA-CACAG-TTCC-GTACAATAAAAAA-CTGTAAGCGCTT
gi|21 : atatatatatttccaaagaataattgggtttggtcagaaataaataactttatattGAAACCACAAGAATGA-CACAG-T-CC-ATACAATAA
gi|14 : ttaacacacgagtaaatgtataatttaaaatCTTT--C--G-C--CATGTT--AGTT-CTCCAGAC---AG---T--TTGTTTT-GAAT-------------------A----ATACAATGCTA---------------------------TTGTTTAT----------AACGTCACAATCCTTCTTG--TTGAAG-AT-AA-CAT-CA-CA---ATTACT-TCT-GGTAG--CATTG---AACTAAGAT-TAACAATA-CAGTAATAATT-TCAGACAAA
gi|4 : -AGGAT-TAACAATA-CAGTAATTGAA-TCCGACAAATCATACCACTTATA--------------GTTAAATAGTTTTATAA-AGAAATAATTTTTTGATAA-AAACAATATGTC---ATCCT--CGTTCCACACTTTG--TAAAA
gi|19 : TCCTTTGCC--ACA-TCGG--CAAAA--TTGAC-ACAAGGGA-ATTGGCGGtgtaatgttgcagacgctggaatctggaatcttttgtttgtatactcgaacccgtgtgatgagtcttcccgcttgttcaatgtcgaattatttgcatatgcatgggtcatatagcacaatatagcagattttgacctttgcattcatgttggcgtttgatattgttttccatccagtttttaatacgatgttttccccttcttcaatataatcctatgttctacatcacgggtttcctcatttagaaatgttttttatgtgtgatattcttttaacgtttggtgcttgccttctgctatttatg
gi|26 : attctccgttccacataacataaatgcgg--ACATTCGG--CAAAATGTTGACAGCACGGGGTtcgctg
gi|4 : TGTT-GCAGACGC-TGGAATCTGGAATC-TTTTG-TTTGTATACTCGAACCCGT-GTG-ATGA--GTCTT--CCCGCTT-GT--T-CA-AT--GTC-GAATTATTTGCATATGCATGGGTCATATAGCACAATATAGC-AGATTTT-GA---CCTTTGCA-TTCATGTTGGCGTTT-GATA-TTGT-TTTCCATCCAGTTTTT--AATA-CGATG-TTTTCCCCTTCTTCAATATAATC-CTATGTT--CTACATCACGGGTTTCCTCATTTAGAAATGT----------TTTTTATG-------------TGTG-----ATATTC-TTTTAACGTTTGGTGCTTGCCTTCTGCTATTTATG---
gi|24 : aggattaacaatacagtaattgaatccgacaaatcataccacttatagttaaatagttttataaagaaataattttttgataaaaacaatatgtcatcctcgttccacactttgtaaaatgtaaTCATATTGGCGTTT-GGTG-T-GATTTTCCTTCC
gi|8 : gatacatgaagttctattgGATTTTGAGACTGTT--TTAATATAGGT---AAATAAATCTTCTGAGCGGTTCCAAAAATATTGTGGTTGCTTGGATT--ATG---------CAAACGGAATATCG-TTGT-TTATACG-CATT-TTCTTCTTCAT---GACGGGAGTTT------CGTAA-GGTAGA-TATTGGTATGCTCCGT-GCTTTTGTAGA-AGCG-TCATTG-----AT-GAGGT-TTTCTGGATAATGTTGTCGTTTA--AGGTATTCTTTCA---ATTCCT-CCAATCTTTTAGACCGTAAT-GAAGTATTCTTTAT--A---ACTGCA---CA---T--ATCTGTCC-GGCCATGTTGTATGAA--A--TGTT-ACG-TTTGGC-ATG-----AGGAA-G-GCAGAGA--AA-AAAT----TCTTAAAT--GCCG
gi|25 : TCTTGGGTT--GTGGGTAAC-GACCAGCGGAATGTTT-CTGT-TTA-AGT-CA
gi|5 : TTTGT---G-------TTTC---CCCTAAT-TTT-GA-TCTAAGGATG-T--ACTGCTTTTTT--AAACCT-GCATTT-----A---AGGT-TGTCTGG-TA-----------TA--ATGTACATCGA-A---TTTCGT-TCATTCGT---------AGTC--AGCA-----CA-A-A---ACAATAG--CA---T--A---ATCT-CAGTAAATTGAA-GCA--A--TGTT-A-A-TTTAGTGATG--TGCCGGAT-G--CA-AGATTTA-AAAT----CC--CAAT--AC-GA------GTGTATGC---GTC-CTC------------GTC-GCCC--------TC--TT--------TTCATGA---TAGTTCATCTA----GCAAT--AAAGTT--GTCTT--CATTGC-TTTCA-TTG-TAAAATGT-AATCGA-TCGTGTAAAATTGTTCTAGTAGATT-TG-AATTTCAGTAGCCTTT---C---TTCTTGA-TCAAAAAAAATGAAAACAATCATCGAAATCAGATTATCTTTT-CAG-T-TTCT--GAAT--------CTACTGAACA-AATCTT-------AAATT------GTA-CTGGT--TACATTT
gi|10 : T-GA-TATTGGTATG-TTCTGTGCTTTTGT-AATTCCG-TCATTG-----AT-GAGGT-TTTCTGGATAATGTTGTCTTTTA--AGGTATTCTTTCA---ATTCCT-CCAATCTTTTTTATCGTAAT-GAAGTA----TCCGT-T---ATTATTGCACAACTT--ATCGGTCTGGGCCATGTTGTATCGCGAA--TGTTAACGTTTTTGT-ATG------GGATAG-GC
gi|16 : tcgttgtttacattgttttcttcttcatgacgggagtttcgtaaggtTG--AGCTGGAT-G-GCA-TGATTTA-AAAT----TC--AAAA--ATTGA-----TGTGTGTCC---GTTGTTGTTTT-AAAATACATCGG---TTAGGATTTTAGTT--CCATGCTTTATCAATTTAGT--GTCCAAAATGAAATT-GAAGT---ATT-----ACTGTATTCCA-
gi|17 : ATG-GAAGTTTCGTTT---CTTTG-ATTCCA-TGGGT-GAATTTTAATCGAT-CGTGT-AAATTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAT--GAAACAAGTACAGACA------TATTTT
gi|12 : AAACAGTCATCAAGG------TATCTTTTCCAGATGTTTTTGATGTTATCAGCAATGTTAAATCGCACTCAC-ATTAA----TTTTAAGGCAA------AGAC----TCTCCACTAAATATCCTAGTGTAAGTGT-GC-CATTGGTCGGTGCTATT-TTGGTTCCCATAGCTGTTCCCTTTATTTTTTGG------TAATGTTTATCGTC--AAAATTGAA
gi|15 : aCATAA--GTAGGTGCAACT-TTGGTCCCCTTTGCTGTTCCCTAAC---TTTGG-A--GGTAATGGTGGTCG-C--AAAA-AGCAAATG-AATTG-T-TCTCAAGAAC-CAATTTAAG-TC-CTTC
gi|9 : CTTTGTCCCCATTGCTGTTCC--TTA---TTTGGTAATGAT--------TGGTCGGAAAA--GCAAATGAA-TTG-TATCTC-AGAAC-CAATTATAAGTC-CTTCCCATAAATAAATCTTCTTTTGA----------AACTTTGTC------ATATCCAGGTATT----TCCGGATTATT--TCCATCCAAAAG--TTTACGGCTTCTAAGATTCCCAA-TCCTGTAGG-AATGTTCGGTCAATATAAA-TAATAACATCC-A-AAAGTGAC--AAGTCTGGTTC--GTTTGAcaaaataaaattctgttcaaaatttcgggattattt
gi|13 : ggtaggttgcaaaAAT-TGAACTTTT-TG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCT-TGGCCTC-AAC--TCCTAAGTTGTGT-GG-AATATTT-G---ATATAGACTTACCACAT-CAA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTTTGGG--ATATG-ATT
gi|20 : GTAAAACTTGT---ATAAATTCACAAAGTGC-TTCAGTGAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TCGTACTTACTGCAAAGAATCGAAATTTTGCCTGAAATTTCTTCCAATATCCTTTCCATTCCGTTAAAATCTGCTACCGATTTTGCACGAGTTTGTGACATCTTGGTCGTGTATCAAATTTAAAATAATTTAGTAAAAGGAATCCAGTATTTGATACAGTAAATATTTCCAATAATAAAATTCAAAAAACACAA
Unaligned ( gi|22 ): TTCGTAAGAGGAATTCTATTTGATACAGTAAATATATGCATTGCTAAAGTCAAGAAATACAAA
Unaligned ( gi|23 ): TTCCATGCTTTATCACTTTAATGTCCAAAAAATTAAATTGAAGTATTACTGTATTCCA
Alignments
lowQualScore : 1 1 111 111111 111111111111 11 1 11111111 11 11 1 222 1 2 1 1 2 1 1 11111 111 1 11 11 1 11 1 1 222 1 11 33 1 1111 1 11 11 111 11 33333333 111 111 11 1 1 11 22 1 222 11 444 66666 33 11 1 11 22222222 1 1 1111 666666666666666666666666666666666 1111 1111111 2222222222 11 1111 11 555555555555555 3333 11 11 111 1 1111 11 11 222222 111 44444444 7777777777777777777777777777 111 22222 2222 11 111 1111 111 1 1 2 2 111 22 222222 111 33333333 1 11 2222 22 1 2222 11 1111 44444 1 111 111 1 1 5555555555555555555555555555555 222 11 1 11 1 11 1 1 111111 1 1 222 2 2 11 222 1 33
lowQualScore : 1 5 5 5 5 1 6 99 99 6 99 99 3 111 555555 6 7 3 6 555555555555 1 00 3 3 77777777 44 3 44 3 99 3 6 3 6 6 5 8 8 444 0 777 6 6 8 0 0 3 0 0 0 0 3 66 0 2 22222 777 0 33 3 3 33 3 3 8 11 1 99 3 7 99 8 8 1 2 0 0 6 111 0 33 77 0 7777 0 33 22 55 777 22 2 8 55555555 111 8 8 8 777 22 2 0 2 2 3 0 33 0 1 0 6 7 11 3 1 1 6 0 111 88 1 0 555 1 1 1 00000 0 00 55 1 1 2 88 0 3 33 44444444 2 1 0 8 3 888 8888 6 111111111111111111111111111111111 8 1 1 1 1111 8 1 7777777 44 2222222222 8 1 6 0 444 11 1 22 6666 8 1 8 1 11 666 1 33 3 111111111111111 0000 11 0 8 8 1 8 1 88 8 1 11 8 3 88 222 1 6 6 6 11 8 7777 11 11 3 888888 3 777 0 44444444 9999999999999999999999999999 1 777 22222 1111 33 333 7777 44 8 111 0 66 0 0 3 0 3 2 2 777 2 3 2 3 77 333333 0 2 111 1 3 66666666 0 2 22 0 4444 3 0 999 55 0 3 1 1 6 1 0 0000 6 33 1 3 8 6 4444 22222 8 22 0 1 1 888 111 3 4 2 3 0 0 3333333333333333333333333333333 333 22 0 3 33 55 0 33 2 2 0 0 999999 55 2 0 55 0 555 3 3 88 4 11 999 0 1 1 4 7 0 6 00
lowQualScore : . . . . . . . .. .. . .. .. . ... ...... . . . . ............ . .. . . ........ .. . .. . .. . . . . . . . . ... . ... . . . . . . . . . . . .. . . ..... ... . .. . . .. . . . .. . .. . . .. . . . . . . . ... . .. .. . .... . .. .. .. ... .. . . ........ ... . . . ... .. . . . . . . .. . . . . . .. . . . . . ... .. . . ... . . . ..... . .. .. . . . .. . . .. ........ . . . . . ... .... . ................................. . . . . .... . . ....... .. .......... . . . . ... .. . .. .... . . . . .. ... . .. . ............... .... .. . . . . . . .. . . .. . . .. ... . . . . .. . .... .. .. . ...... . ... . ........ ............................ . ... ..... .... .. ... .... .. . ... . .. . . . . . . . ... . . . . .. ...... . . ... . . ........ . . .. . .... . . ... .. . . . . . . . .... . .. . . . . .... ..... . .. . . . ... ... . . . . . . ............................... ... .. . . .. .. . .. . . . . ...... .. . . .. . ... . . .. . .. ... . . . . . . . ..
lowQualScore : 0 7 7 7 7 1 7 22 22 7 22 22 3 777 888888 7 5 3 7 888888888888 0 22 2 3 77777777 33 2 77 7 22 5 7 3 7 7 6 0 0 000 6 333 7 7 0 8 0 2 0 0 0 0 2 88 0 0 00000 555 0 88 2 2 88 2 3 0 00 7 22 2 5 00 0 0 0 5 0 0 5 000 0 88 55 0 8888 0 88 55 88 555 55 5 0 44444444 222 0 0 0 000 00 0 0 5 5 2 0 88 7 0 7 7 3 77 3 0 0 7 7 000 00 0 7 333 0 0 0 00000 7 33 77 0 0 0 00 7 2 88 55555555 5 0 0 0 2 888 5555 5 444444444444444444444444444444444 0 0 0 0 2222 0 0 0000000 22 2222222222 0 0 8 8 222 00 0 44 8888 8 0 0 0 88 444 4 00 8 888888888888888 6666 00 8 2 0 0 8 0 88 0 0 00 0 2 88 777 0 7 7 0 88 0 0000 00 00 2 222222 2 555 2 55555555 5555555555555555555555555555 0 000 00000 2222 00 888 4444 66 0 000 0 55 0 0 2 0 2 5 5 555 5 2 5 2 55 000000 8 5 000 0 2 22222222 5 5 55 2 5555 2 2 000 55 0 2 0 0 7 0 7 0000 5 88 0 0 0 4 8888 66666 0 88 6 4 0 555 000 2 0 5 2 0 0 6666666666666666666666666666666 000 55 0 2 88 22 0 88 5 0 0 0 000000 88 5 0 88 0 000 3 3 00 0 77 777 7 0 0 0 3 7 7 77
consensus : AGAANTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGNTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATGAACGTCACAATCCTCCGTG--TTGAGT-AT-AACGT-CA-CAATTATTACT-TCT-GGTA-GCATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGCGCT-A-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTGTTT-ATGCACTCGAACTC-TTGCGA-TGA--GTCTTCCCG-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACAATATATC-AAATTTTN--A--T-TTTGCAATTCATATTGGCG-TTTGGTGT-GA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGTGG-TAAGTATTC-TTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTC---AAGATTGGGAAA----AAACGTTTT--GCGGTCCCTATGATGTTATGATTTCTTGGGTT--GTGG-TAACG-ACCAGCGGAATNTTT-CTGT-TTACAGT-CATTANNCTTCTTCGT---GACGGGAGTTTC---CCCGTA---T-TCT-GA-TCTAGGNATGTCCANTGC-TTTTTT-GA-A--CCGNCATT-----NAT-GAGGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTACACCGT--CAATTCNTCCAAT-CGTTTAGACCGTAGT-CAAGTA----T-CANA-ATT-ACTACA-G-GCAT--ATCNGTCT-GGCTANGTTGAAT-G-GAA--TGTT-ACGTTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACCGA-----TGTGTATCC---GTCCT--CTTGC-AAAATACGTCTGTACTTA----TTTCGTTCGCCATT-TTTTATGA--TTAG-T-CATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-T-GAATTT-AATCGATTCGTGT-AAATTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAA---TTTTGGTAGCTGGC-ATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGT-GCGTAT--GTGGGNGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGG-AAGATAATG-TTCGTCGTCAAAATGNAAATG-G-TTG-T-TCTCAAGNACNAATTTTAA-TC-CTTC---CCATAAATAAATNTTCTNTTNAAAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACATCCA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTTTGGG-AATATG-ATTAAGAAAATCCATATCATCCCCTTNGTAAAACTTGTT--ATAAATTNACAAAGTGGCTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
Reference ( family-450 ) : AGAANTCACAAGAATGA-CACAG-T-CC-GTGCAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATANTTNA-CGTTGCT-G--AA----ATACAACGNTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATGAACGTCACAATCCTCCGTG--TTGAGT-AT-AACGT-CA-CAATTATTACT-TCT-GGTAGGCATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGACAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAG-TTTATAA-AGAAGTCCTCCTTTGATAA-ACGCGCT-A-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAANGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTGTTT-ATGCACTCGAACTC-T-GCGA-TGA--GTCTTC--G-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACGATATATC-AAATTTTN--A--T-TTTGCAATTCATATTGGCG-TTTGGTGT-GA-TTTCCTTCCGGTTTTT--AATA-CGACG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGGTCTCCNCATTTGGAAATGTGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGTGGGTAAGTATTC-TTTTAANGTTNGGCGCTTGCCTTCTGCTATCTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTNAGACTGTTCGCTAANATNGGNAAAAAATAAACGTTCTGAGCGGTCCCNANGATGTTGTGGTTTCTTGGGTT--GTGG-TAACG-ACCAGCGGAATNTTT-CTGT-TTACAGT-CATTANNNTTCTTCGT---G-------TTTC---CCCGTA---T-TNT-GA-TNTNGGNATGTCCANTGC-TTTTNT-GA-A--CCGNCATT-----NAT-GAGGT-TNTCTGGATAATGTTGTCTTTTA--ANGTACNCCGT--CAATTCNTCCANT-CNTTTAGACCGTAGT-GAAGTA----T-CANA-A---ACTACA-G-GCAT--ATCGGTCT-GGNCANGTTGNAT-G-GNA--TGTT-ACGTTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACCGA-----TGTGTATCC---GTCCT--CTT-C-AAAATACGTC-GC-CTTA----TTTCGTT--CCA-T-CTTTATNA--TTAG-T-CGTCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-T-GAATTT-AATCGATTCGTGT-AAATTGTTC-AACAGAGTATG-AATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTNTTGAAAT--------ATACTGAACAGAATTTTC-ATCAAA---TTTTGGTAGCTGGC-ATA-CATTTTCTCCNCCAAANATCCCANTGCAAGNGT-GCGTAT--GTNGGTGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGG-AAGATAATG-TTNATCGTCAAAATGNAAATG-A-TTG-T-TCTCAAGAACCAATTTTAA-TC-CTTC---CCATAAATAAATCTTCTTTTGAAAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTACGGCCTC-AAG--TCCTAAGTCGTGT-GG-AATATTC-GT--ATATAGACTTACCACATCCA-AAACTGACTAGAGT-TGTTTC-GGTTTAACTGTTTTGGGCAATATGCATTAAGAAAATCCATATCATCCCCTTTGTAAAANCTGTTTAACAAATTNACANAGTGNCTTCAGTGAAATGTCTAGAAAATTACTAAGTCTTTGTGTACT
gi|1 : AGAATTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGTTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATAAACGTCACAATCCTCCGTG--TTAAGT-AT-GACGT-CA-CAATTATTACT-TCT-GGT--CCATTGAAAAAC-AGGAC-TGAC--TA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGTGCTAA-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAATTTTTGAATTTTCCTT-TGC--AACATTCGG--CAAAATGTTGACTGCACGGGGTATT-GCGGA-GC-TGGCATCTCGAATC-TGTTGTTT-ATG-ACTCGAACTC-T-GCGA-TGA--GTCTTC--GTTTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTA---GGG-CATATAA-ACAATATATC-AAATTTTC--A--T-TTTGCAATTCATATTGGCGTTTTGGTGT-GA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTT-AATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGTGGGTAAGTATTCTTTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATG---ATATAGAGGTGTTGAACAAGGTTT--CAGATTTTCAGATTGTTC---AAGATTGGGAA-----AAACGTTTT--GCGGTCTTTATGAT-TTATGATTTCTTGGGTT--GTGG-TA--G-ACCAGCGGAATTTTT-CTGT-TTA-AGT-CATCAGGTTT-TTTGT---G-------TTTT---TCCGTA---T-TCT-GA-TCTAGGAATGTCCATTGCTTTTTTT-GATA--CCAGCATT-----TAT-AAGGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTAAACCGT---AATTCGTCCATA-CGTTTAGATC-TAGTCCCAGTG----T-CAGA-A---ACTATA-GAGCAT--ATCCGTCT-GGCTAGATTGAAT-G-GTA--TGTT-ACGCTTGGT-ATG--TGCCGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTCTC--CTTGCAAAAATATGTCTGTACTTA----TTTC-TTCACCATT-TTTTATGA--TTAG-TACATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-T-GAATTT-AATCTATTCGTGT-AAATTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCC--AAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAGAATTTTTGGTAGCTGGCTATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGTCGCGTAT--GTGGGGGCTACTCTTAGTTCCCATTGCTGTTCCCTTTA---TCTGGAAAGATAGTA-TTCCTTGTCAAAATGAAAATG-G-TTG-T-TCTCAAGTACAAGTTTTAA-TC-CTTCTNNNNNNNNNNNNNNNNNNNNNNNNNAATATGAACTTTTTTG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACAT-CA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTGTGGG-AATATG-ATTAAGAAAATCTATATCATCCC--TAGTAAAACTTGTT--ATAGATTTACAAAGTGGGTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|10 : TGT-TTACA-T-TGTT-TTCTTCTTCAT---GACGGGAGTTTC------GTAAGGT-T---GA-TATTGGTATGTTCTGTGC-TTTTGT--A-ATTCCGTCATT-----GAT-GAGGT-TTTCTGGATAATGTTGTCTTTTA--AGGTATTCTTT--CAATTCCTCCAAT-CTTTTTTATCGTAAT-GAAGTA----TCCGTT-ATT-ATTGCACA-ACTT--ATCGGTCTGGGCCATGTTGTATCGCGAA--TGTTAACGTTT--T--TG--TATGGGATAG-GCtgaagagggtccggcaataattggacgtaatttaagatccattggttttttggattttaacgtacgtactccggcaatttttgatactttcctggatttgttttcatctatggatttctggtacaccataaaaattactagttttcgcttcaaagctagttaaaaaatcaaactcattgttcgt
gi|12 : tcgtAAACAGTCATCAAGG------TATCTTTTCCAGATGTTTTTGATGTTATCAGCAATGTTAAATCGCACTCAC-ATTAA----TTTTAA-----GGC-AAA-GACT--CTCCACTAAATATCCTAGTGTAAGTGT-GC-CATTGGTCGGTGCTATT-TTGGTTCCCATAGCTGTTCCCTTTATTTTTTGG-----TAATG-TTTATCGTCAAAATTGAA
gi|13 : aAAT-TGAACTTTTT-G-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCT-TGGCCTC-AAC--TCCTAAGTTGTGT-GG-AATATTT-G---ATATAGACTTACCACATCAA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTTTGGG--ATATG-ATT
gi|14 : CTTT--C--G-C--CATGTT--AGTT-CTCCAGAC---AG---T--TTGTTTT-GAATA-----------------------ATACAATGCTA----------------------TTGTTTAT----------AACGTCACAATCCTTCTTG--TTGAAG-AT-AACAT-CA-CA---ATTACT-TCT-GGTA-GCATTG---AACTAAGAT-TAACAATA-CAGTAATAATT-TCAGACAAA
gi|15 : CATAA--GTAGGTGCAACT-TTGGTCCCCTTTGCTGTTCCCTAAC---TTTGG--AGGTAATG-GTGGTCG-CAAAAAGCAAATGAA-TTG-T-TCTCAAGAACCAATTTAAG-TC-CTT----CCA-AAATAAA-ATTCTGTTCAAAAT-T
gi|16 : TG--AGCTGGAT-G-GCA-TGATTTA-AAAT----TC--AAAA--ATTGA-----TGTGTGTCC---GTTGTTGTTT-T-AAAATACATC-G--GTTAGGATTTTAGTT--CCA-TGCTTTATCAATTTAG-T--GTCCAAAATGAAATT-GAAGT---ATT-----ACTGTATTCCA-tcgggattattt
gi|17 : ATG-GAAGTTTCGTTT---CTTTG-ATTCCA-TGGGT-GAATTTTAATCGAT-CGTGT-AAATTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAT--GAAACAAGTACAGACA------TATTTT
gi|18 : GATTTCACAAGAATGA-CACAG-TTCC-GTACAATAAAAAA-CTGTAAGCGCTT
gi|19 : atatatatatttccaaagaataattgggtttggtcagaaataaataactttatattTCCTT-TGC--CACA-TCGG--CAAAA--TTGAC-ACAA-GGGAATTGGCGGTCGC-TG
gi|2 : attctccgttccacataacataaatgcggGAATTCACAAGAATGA-CACAGGT-CA-GT-CAATAAAAAA-CTGTAAGCGCTTC--CCCG-C--CATGTT--GGCT-CTTCAGAC---AAGTAT--TTGTTTTTGAATAGTTAA-CGTTGCTTG--AA----ATACAACCGTA-ATTGTTTA-TGACTGTTA---TTGTTTA--AACGTCATGA-CGTCACA--CCTCCGTG--T-GAGT-ATGAACGT-CA-CAAT-ATTACTCTCT-GGTAAGCATTGAAAACA-AGGACCTGACAATAACAGT--TTAAA-TAAGATAAATCATCTCACTTATAATTCAAGTTTTAGGGTTAAACAG-TTTATAA-AGA-GTCCTCCTTTGATAA-ACGTGCT-AAT-TCTGCCT-CT--CGT--CACATTTTGATCAAAAGGGGAAAA-TTTTGAATTTCCCTT-TGCGCCACATTCGGGGCAAGAGAATGACTGCAGCGGGTATT-GCGGACGCCTGGGAT-TCGAATCCTGTTGTTT-AAGCACTCGAAATC-TTGCGA-TGAACGTCTTCC-G-TTTGTACCACA-ATTCGTAAGAACTCTT-GCATGTG---GG--CATATAACACAATATATCTAAATTTTTCAACTT-TTTGGCATTCATATTGGCG-TTTGTGGT-GA-TTTTCCTTCGGTTTTTTAAATAATGACG-TTTTCCC-TTCTTCA-TATACTCCACACGTTTTCCACATTGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGTGG-TAAGTATTC-TTTTAAGGTTGGGCGCTT-CCTTCTGCTATCTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTCGC-AAGATTGGGAAAAA--AAACGTTTT--GCGGT--CTATGATGTTA-GATTTC-TGGGTTTGGTGG-TAACGAACCAGC-GAATTTTTGCTGTCTTACAGTCCATTAAGGTTTTTTGTTGGG-------TTTTGCGCCCGTA---TATCT-GATTCTAGGAATGTCCA-TGC-TTTTTT-GA-C--TATATATTTCTTAAATAAAGGTATGTTCCGGTAATGTTGCGTCCTACTATCCACACCGTAACGATTCGTCCCATACGTTTAGAC-----T-CAGGTG----T-CAAATATTTACTACG-A-G-ATGAATCAGTCT-GGATA-GATGAAT-G-GTAGTCGTG-ACGCTTGGT-AAAGCTGCGAGAT-GTGTATATATATATATATATTACC--AAATTAACTGAGATGGTG-GTATCCGCAGTCCT--CTTGC-AAAATATGTCTGTACTTA----TTTCGTTCGCCATT-TTTTAGAG--TTAT-A-CATCTG----AAAATGCGAAGTT-CGTTTTTCCATTATATTCCATTGG-T-GAATTA-AATCGATTCGTGT-AAATTGTTCAAACAGAGTATG-AATG-GT-TA-CTTTTTGATCTTTCC-TGAGTCCAAAAAAAATGAAACAATCATCGAGA------TATC-TTTCCAG-T-TAACTGAAAT--------ATA-TGAACAGAATTTTCAATCAAA---TTTTGGTAGCTGGC--TATCATTTTCTCCTCCAAAAAT-CCATTACAAGG---GCGTAT--GTGGGGGCTACT-TTAGT-TCCATTGCTGTTCCCTTTA----CTGG-AA-ATAGTA-TTCATTGTCAAAATGAAAATG-G-TTGTT-TCTCAAGTACAAA-GTTAA-TCACTTC-------AAATA------------------TGAACTCTTTTGAAAAAACGCTCACTTACTGGCATTCGAT-AATTTCTCCAACCAGAAAATTCTATGGCCTC-AAG--TCCTAAGTTGTGT-GGAAATATAT-GT--ATATAG-CTTACCACATCCACAAACTGA-TAGAAT-TGTCTC-G--TTAACTGTTTTGGGCAATATGCATTAAGAAAATCCATATCATCCCCTTTGTAAAAGCTGTTTAACAAATTAACACAGTGGCTTC-GTAAAATGT-TAGAAAATTACTAAGTCTTTGTGTACT
gi|20 : tttataatGTAAAACTTGT---ATAAATTCACAAAGTG-CTTCAGTGAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|21 : GAAACCACAAGAATGA-CACAG-T-CC-ATACAATAA
gi|24 : ttaacacacgagtaaatgtataatttaaaatGATACATG-AAGTTCTA--------TTG----TCATATTGGCG-TTTGGTGT-GATTTTCCTTCC
gi|25 : TCTTGGGTT--GTGGGTAACG-ACCAGCGGAATGTTT-CTGT-TTA-AGT-CA
gi|26 : ACATTCGG--CAAAATGTTGACAGCACGGGGT
gi|3 : AGAATTCACAAGAAT-A-CACAG-T-CCCGT-CAATAAAAAC-TTGTAAGCGCTTT--C--G-CGCCATGTT--GGCTACTTCAGAC---AG---T--TTGTTTT-AGATAGTTAAGCGTTG-T-GTCAA----ATACAACGTTA-ATTGTTTACTGAC-GTT-----TGTTTATCGACGTCATGA-CGTCATAATC-TCCATG--TTGAGT--T-GACGT-CAACAATTATTACT-TCTTGGTAG-CATTGAAAA-C-AGG-C-TGACAATA-CAGTAATTAAAATCAGATAA-TCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAG-TTTATAATAAGAGTCCT---TTGATAACACGTGCT-A-T-TC---AT-CCTCCGTTCCACATTT-G--TAAA-GGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGCATCTCGAATC-TGTTGTTTTATGCACTCGAACTC-TTGCGAATGA--GTCTTCCCG-TTTGT--C-CATAT--GTA--AACTCTTT-CATGTA---GGG-TATATAGCACGATATATC-AAATTTTT--C--T-TTTGCAATTCATATTGGCG-TTTGGTGT-GA-TTTCCTTCCGGTTTTT---ATA-TGATGTTTTTCCCCTTCTTCAATATACTC-ACACGTT--CCA
gi|4 : tata-AGGAT-TAACAATA-CAGTAATTGAA-TCCGACAAATCATACCACTTATA--------------GTTAAATAGTTTTATAA-AGAAATAATTTTTTGATAA-AAACAAT-A-TGTC---ATCCT--CGTTCCACACTTTG--TAAAA
gi|4 : TCCTCGTTC--CACACTTTG--TAAAATGT-------AATG----TT-GCAGACGC-TGGAATCTGGAATC-TTTTGTTT-GTATACTCGAACCCGT-GTGA-TGA--GTCTTCCCG-CTTGT--T-CA-AT--GTC-GAATTATTTGCATATGCATGGGTCATATAGCACAATATAGC-AGATTTTG--A--CCTTTGCA-TTCATGTTGGCG-TTTGATATTGT-TTTCCATCCAGTTTTT--AATA-CGATG-TTTTCCCCTTCTTCAATATAATC-CTATGTT--CTACATCACGGGTTTCCTCATTTAGAAATGT----------TTTTTATG-------------TGTG-----ATATTC-TTTTAACGTTTGGTGCTTGCCTTCTGCTATTTATGtgtaatgttgcagacgctggaatctggaatcttttgtttgtatactcgaacccgtgtgatgagtcttcccgcttgttcaatgtcgaattatttgcatatgcatgggtcatatagcacaatatagcagattttgacctttgcattcatgttggcgtttgatattgttttccatccagtttttaatacgatgttttccccttcttcaatataatcctatgttctacatcacgggtttcctcatttagaaatgttttttatgtgtgatattcttttaacgtttggtgcttgccttctgctatttatg
gi|5 : aggattaacaatacagtaattgaatccgacaaatcataccacttatagttaaatagttttataaagaaataattttttgataaaaacaatatgtcaTTTGT---G-------TTTC---CCCTAA---T-TTT-GA-TCTAAGGATGT--ACTGC-TTTTTT-AA-A--CCTGCATT-----TA---AGGT-TGTCTGG-TA-----------TA--ATGTACATCG----AATTT---CGTT-CATT-----CGTAGT-CA-GCA------CA-A-A---ACAATA-G--CAT--A---ATCT-CAGTAAATTGAA--G-CAA--TGTT-A-ATTTAGTGATG--TGCCGGAT-G--CA-AGATTTA-AAAT----CC--CAAT--A-CGA------GTGTATGC---GTCCT--------------CGTC-GC-CCTC----TT--------------TTCATGA---TAGTT-CATCTA----GCAAT--AAAGTT--GTCTT--CATTGC-TTTCA-TTG-TAAAATGT-AATCGA-TCGTGTAAAATTGTTCTAGTAGATT-TG-AATTTCAGTAGCCTTT---C---TTCTTGA-TCAAAAAAAATGAAAACAATCATCGAAATCAGATTATCTTTT-CAG-T-TTCT--GAAT--------CTACTGAACA-AATCTT-----AAA---TT---GTA-CTGGT--TA-CATTT
gi|6 : GAAATCACAATAATGA-CACAG-T-CT-GTGCAATAAAAAAGCTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---G--TTGTATT-GAATACTTTA-CGTTGCT-G--AA----ATACAACGCTA-TTTGTTTA-TGAC-ATTA---TTGTTTAT-GACGTCATG-ACATAACAATCCTTCGTG--TAGATT-AT-AACGT-CA-CAATTATTACT-TTT-GGTA-GCATTG-GAAAC-AGGAC-TGACAATA-CAGCAATTA
gi|7 : agttatcgtacttacggcagatgatcgttaatttgcaggaaattccttccaagatcctttccattccatttgattctgctaccgatttagatctggtctgtgacatcctagtcttgcaccaaagttcaatatatattttccaaagaatatggtttggtacataaataaatattttaaaatAGAAAACACAATAATGAACACAG-T-CT-GTGCAATAAAAAG-CTGTAAGCGCTTTTCC--GCC--CATGTTGGGGCTCCTTCAGACAGGAG---TGGTTGTATT-GAATACTTTA-CGGTGGT-G--AAAGACATACAACCATATATTG--TAGGGACAATTATTTTTGTTGATGGACGTC-TG-ACATAACAATCCT-CGTGTTTTAGGTCATCAACGTCCA-CAA
gi|8 : tggacatgtctatgcgtactacggcaatgatcgtaatttgcggggaggattccttccaagatccggtttccattccatttgctctgcattaccgatttgtagtctggcctgacacctagtcttgcaccaaagtcctcattatattttcccaaagaatcatggttgggtacataaatagaaatatctttaaGATTTTGAGACTGTTT--TAATATAGGTAAA---TAAATCTTCTGAGCGGTTCCAAAAATATTGTGGTTGCTTGGATT--ATG---------CAAACGGAATATCG-TTGT-TTATACG-CATT-TTCTTCTTCAT---GACGGGAGTTTC------GTA---A-GGTAGA-TATTGGTATGCTCCGTGC-TTTTGTAGA-A--GCGTCATT-----GAT-GAGGT-TTTCTGGATAATGTTGTCGTTTA--AGGTATTCTTT--CAATTCCTCCAAT-CTTTTAGACCGTAAT-GAAGTATTCTT-TAT--A---ACTGCA----CAT--ATCTGTCC-GGCCATGTTGTAT-G-AAA--TGTT-ACGTTTGGC-ATG-----AGGAA-G-GCAGAGA--AA-AAAT----TCTTAAAT--GCCG
gi|9 : ACT-TTG-TCCCCATTGCTGTTCC--TTA---TTTGG-----TAATGATTGGTCG--GAAAAGCAAATG-AATTG-TATCTCA-GAACCAATTATAAGTC-CTTC---CCATAAATAAATCTTCTTTTGA-------AACTTTGTC------ATATCCAGGTATT----TCCGGATTATT--TCCATCCAAAAG--TTTACGGCTTCTAAGATTCCCAA-TCCTGTAGG-AATGTTCGGTCAATATAAA-TAATAACATCCA-AAAGTGAC--AAGTCTGGTTC--GTTTGA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGTACTTACTGCAAAGAATCGAAATTTTGCCTGAAATTTCTTCCAATATCCTTTCCATTCCGTTAAAATCTGCTACCGATTTTGCACGAGTTTGTGACATCTTGGTCGTGTATCAAATTTAAAATAATTTAGTAAAAGGAATCCAGTATTTGATACAGTAAATATTTCCAATAATAAAATTCAAAAAACACAA
Unaligned ( gi|22 ): TTCGTAAGAGGAATTCTATTTGATACAGTAAATATATGCATTGCTAAAGTCAAGAAATACAAA
Unaligned ( gi|23 ): TTCCATGCTTTATCACTTTAATGTCCAAAAAATTAAATTGAAGTATTACTGTATTCCA
Alignments
lowQualScore : 1 111 111111 111111111111 11 1 11111111 11 11 1 1 2 1 1 1 1 1 11111 111 1 11 11 1 11 1 1 1 11 1 1111 1 11 11 111 11 333333 11 111 1 1 1 11 1 1 222 11 2222 222 1 11 11 1 11 22222222 1 1 2222 2222222 333333333333333333 1111 1111111 2222222222 11 1111 333333333333333333333 11 111 111 1 1111 11 11 222222 111 3333333333333333333333333333333 1 11 22 2222 111 1111 1 1 1 1 1 2 111 22 222222 111 33333333 11 111 22 1 111 11 1111 44444 1 111 111 1 1 5555555555555555555555555555555 222 11 1 11 1 11 1 1 1 111 1 1 11 22 1 11 222 11
lowQualScore : 1 5 5 5 5 9 6 99 99 6 99 99 3 111 555555 6 6 3 6 555555555555 1 00 3 3 77777777 44 3 44 3 99 3 6 3 6 6 5 8 8 88 0 777 6 6 8 0 0 3 0 0 5 0 3 66 0 2 22222 777 0 33 3 3 33 3 3 8 11 1 99 3 7 5 1 8 8 1 2 0 0 6 9 0 33 2 2 0 7777 0 33 22 55 777 22 2 8 666666 55 8 8 8 777 0 0 2 2 3 0 33 6 7 3 6 3 6 111 88 7777 555 3 88 55 2 7 3 33 44444444 2 1 0 8 3 888 6666 2222222 555555555555555555 8 1 1 1111 8 0 7777777 44 2222222222 8 6 0 333 11 22 6666 3 11 8 5555 1 8 3 666666666666666666666 11 0 3 8 8 1 88 444 8 8 3 88 222 1 6 6 6 11 8 7777 11 11 9 888888 3 777 0000000000000000000000000000000 2 666 0 0 0 33 3 22 1111 8 333 7777 44 8 0 0 0 5 0 0 3 3 3 3 2 2 777 3 3 2 3 77 333333 0 2 111 0 3 66666666 7 2 22 33 777 3 0 999 55 0 3 6 999 6 33 0 1 8 6 4444 22222 8 44 0 1 1 888 111 3 1 1 3 0 0 1111111111111111111111111111111 333 22 0 3 33 3 0 33 2 0 0 0 777 55 2 0 55 0 55 00 3 88 1 555 1 6 7 6 88
lowQualScore : . . . . . . . .. .. . .. .. . ... ...... . . . . ............ . .. . . ........ .. . .. . .. . . . . . . . . .. . ... . . . . . . . . . . . .. . . ..... ... . .. . . .. . . . .. . .. . . . . . . . . . . . . . .. . . . .... . .. .. .. ... .. . . ...... .. . . . ... . . . . . . .. . . . . . . ... .. .... ... . .. .. . . . .. ........ . . . . . ... .... ....... .................. . . . .... . . ....... .. .......... . . . ... .. .. .... . .. . .... . . . ..................... .. . . . . . .. ... . . . .. ... . . . . .. . .... .. .. . ...... . ... ............................... . ... . . . .. . .. .... . ... .... .. . . . . . . . . . . . . . ... . . . . .. ...... . . ... . . ........ . . .. .. ... . . ... .. . . . ... . .. . . . . .... ..... . .. . . . ... ... . . . . . . ............................... ... .. . . .. . . .. . . . . ... .. . . .. . .. .. . .. . ... . . . . ..
lowQualScore : 0 7 7 7 7 3 7 22 22 7 22 22 3 777 888888 7 7 7 7 888888888888 0 22 2 3 77777777 33 2 77 7 22 5 7 3 7 7 6 0 0 88 6 333 7 7 0 8 0 2 0 0 5 0 2 88 0 0 00000 555 0 88 2 2 88 2 3 0 00 7 22 2 5 2 0 0 0 0 5 0 0 5 2 0 88 5 5 0 8888 0 88 55 88 555 55 5 0 666666 44 0 0 0 000 0 0 5 5 2 0 88 7 3 3 7 3 7 000 00 0000 777 3 33 77 0 3 2 88 55555555 5 0 0 0 2 888 2222 5555555 444444444444444444 0 4 0 2222 0 6 0000000 22 2222222222 0 4 8 444 00 88 8888 8 66 0 4444 4 0 8 666666666666666666666 00 8 8 0 8 4 88 222 0 0 2 88 777 0 7 7 0 88 0 0000 00 00 6 222222 2 555 2222222222222222222222222222222 5 000 8 0 2 88 2 55 2222 0 888 4444 66 0 0 0 0 5 0 0 2 2 2 2 5 5 555 2 2 5 2 55 000000 8 5 000 2 2 22222222 0 5 55 55 555 2 2 000 55 0 2 7 000 5 88 2 0 0 4 8888 66666 0 66 6 4 0 000 000 2 0 0 2 0 0 1111111111111111111111111111111 000 55 0 2 88 2 0 88 5 0 0 0 000 88 5 0 88 0 88 77 3 00 0 777 0 7 3 7 33
consensus : AGAANTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGNTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATGAACGTCACAATCCTCCGTG--TTGAGT-AT-AACGT-CA-CAATTATTACT-TCT-GGTA-GCATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGCGCT-A-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTGTTT-ATGCACTCGAACTCTTGCG-ATGA--GTCTTCCCG-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACAATATATC-AAATTTTN--AC-TTTTGCAATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTT--C-AAGATTGGG--AAA-AAACGTTTTG--CGGTCCCTATGATGTTATGATTTCTTGGGTT--GTGG-TAACG-ACCAGCGGAATNTTT-CTGT-TTACAGT-CATTANNCTTCTTCGTGACGGGAGTTTC---CCCGTA---T-TCT-GA-TCTAGGNATGTCCANTGC-TTTTTT-GA-A--CCGNCATT-----NAT-GAGGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTACACCGT--CAATTCNTCCAAT-CGTTTAGATCGTAGT-CAAGTA-T-CANA-A-TTACTACA-A-GCAT--ATCNGTCT-GGCTANGTTGAAT-G-G-AAT-GTT-ACGTTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-CTCTTGC-AAAATACGTCTGTACTTA----TTTCGTTCGCCATTTTTT-ATGA--TTAGT-CATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-TGAA-TTT-AATCGATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAA---TTTTGGTAGCTGGC-ATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGT-GCGTAT--GTGGGNGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGG-AAGATAATG-TTCGTCGTCAAAATGNAAATG-G-TTG-T-TCTCAAGNACNAATTTTAA-TC-CTTC---CCATAAATAAATNTTCTNTTNAAAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACATCCA-AAACTGACTAGAGT-TGTTTCGGGTTTAACTGTTTTGGG-AATATG-ATTAAGAAAATCCATATCATCCCCTTNGTAAAACTTGTT--ATAAATTNACAAAGTGGCTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
Reference ( family-450 ) : AGAANTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGNTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATGAACGTCACAATCCTCCGTG--TTGAGT-AT-AACGT-CA-CAATTATTACT-TCT-GGTA-GCATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGCGCT-A-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTGTTT-ATGCACTCGAACTCTTGCG-ATGA--GTCTTCCCG-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACAATATATC-AAATTTTN--A--TTTTGCAATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTT--C-AAGATTGGG--AAA-AAACGTTTTG--CGGTCCCTATGATGTTATGATTTCTTGGGTT--GTGG-TAACG-ACCAGCGGAATNTTT-CTGT-TTACAGT-CATTANNCTTCTTCGTGACGGGAGTTTC---CCCGTA---T-TCT-GA-TCTAGGNATGTCCANTGC-TTTTTT-GA-A--CCGNCATT-----NAT-GAGGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTACACCGT--CAATTCNTCCAAT-CGTTTAGACCGTAGT-CAAGTA-T-CANA-A-TTACTACA-G-GCAT--ATCNGTCT-GGCTANGTTGAAT-G-G-AAT-GTT-ACGTTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACCGA-----TGTGTATCC---GTC-CTCTTGC-AAAATACGTCTGTACTTA----TTTCGTTCGCCATTTTTT-ATGA--TTAGT-CATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-TGAA-TTT-AATCGATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAA---TTTTGGTAGCTGGC-ATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGT-GCGTAT--GTGGGNGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGG-AAGATAATG-TTCGTCGTCAAAATGNAAATG-G-TTG-T-TCTCAAGNACNAATTTTAA-TC-CTTC---CCATAAATAAATNTTCTNTTNAAAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACATCCA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTTTGGG-AATATG-ATTAAGAAAATCCATATCATCCCCTTNGTAAAACTTGTT--ATAAATTNACAAAGTGGCTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|1 : AGAATTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGTTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATAAACGTCACAATCCTCCGTG--TTAAGT-AT-GACGT-CA-CAATTATTACT-TCT-GGT--CCATTGAAAAAC-AGGAC-TGAC--TA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGTGCTAA-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAATTTTTGAATTTTCCTT-TGC--AACATTCGG--CAAAATGTTGACTGCACGGGGTATT-GCGGA-GC-TGGCATCTCGAATC-TGTTGTTT-ATG-ACTCGAACTC-TGCG-ATGA--GTCTT--CGTTTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTA---GGG-CATATAA-ACAATATATC-AAATTTTC--A--TTTTGCAATTCATATTGGCGTTTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTT-AATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGTGGGTAAGTATTCTTTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATG---ATATAGAGGTGTTGAACAAGGTTT--CAGATTTTCAGATTGTT--C-AAGATTGGG---AA-AAACGTTTTG--CGGTCTTTATGAT-TTATGATTTCTTGGGTT--GTGG-TA--G-ACCAGCGGAATTTTT-CTGT-TTA-AGT-CATCAGG-TTTTTTGT-------GTTTT---TCCGTA---T-TCT-GA-TCTAGGAATGTCCATTGCTTTTTTT-GATA--CCAGCATT-----TAT-AAGGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTAAACCGT---AATTCGTCCATA-CGTTTAGATC-TAGTCCCAGTG-T-CAGA-A---ACTATA-GAGCAT--ATCCGTCT-GGCTAGATTGAAT-G-G-TAT-GTT-ACGCTTGGT-ATG--TGCCGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-TCCTTGCAAAAATATGTCTGTACTTA----TTTC-TTCACCATTTTTT-ATGA--TTAGTACATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-TGAA-TTT-AATCTATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCC--AAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAGAATTTTTGGTAGCTGGCTATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGTCGCGTAT--GTGGGGGCTACTCTTAGTTCCCATTGCTGTTCCCTTTA---TCTGGAAAGATAGTA-TTCCTTGTCAAAATGAAAATG-G-TTG-T-TCTCAAGTACAAGTTTTAA-TC-CTTCTNNNNNNNNNNNNNNNNNNNNNNNNNAATATGAACTTTTTTG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACAT-CA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTGTGGG-AATATG-ATTAAGAAAATCTATATCATCCC--TAGTAAAACTTGTT--ATAGATTTACAAAGTGGGTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|10 : TGT-TTACA-T-TGTT-TTCTTCTTCATGACGGGAGTTTC------GTAAGGT-T---GA-TATTGGTATGTTCTGTGC-TTTTGT--A-ATTCCGTCATT-----GAT-GAGGT-TTTCTGGATAATGTTGTCTTTTA--AGGTATTCTTT--CAATTCCTCCAAT-CTTTTTTATCGTAAT-GAAGTA-TCCGTT-A-TTATTGCACA-ACTT--ATCGGTCTGGGCCATGTTGTATCGCG-AAT-GTTAACGTTT--T--TG--TATGGGATAG-GCtgaagagggtccggcaataattggacgtaatttaagatccattggttttttggattttaacgtacgtactccggcaatttttgatactttcctggatttgttttcatctatggatttctggtacaccataaaaattactagttttcgcttcaaagctagttaaaaaatcaaactcattgttcgt
gi|12 : tcgtAAACAGTCATCAAGG------TATCTTTTCCAGATGTTTTTGATGTTATCAGCAATGTTAAATCGCACTCAC-ATT-AA---TTTTAA-----GGC-AAA-GA--CTCTCCACTAAATATCCTAGTGTAAGTGT-GC-CATTGGTCGGTGCTATT-TTGGTTCCCATAGCTGTTCCCTTTATTTTTTGG-----TAATG-TTTATCGTCAAAATTGAA
gi|13 : aAAT-TGAACTTTTT-G-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCT-TGGCCTC-AAC--TCCTAAGTTGTGT-GG-AATATTT-G---ATATAGACTTACCACATCAA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTTTGGG--ATATG-ATT
gi|14 : CTTT--C--G-C--CATGTT--AGTT-CTCCAGAC---AG---T--TTGTTTT-GAATA-----------------------ATACAATGCTA----------------------TTGTTTAT----------AACGTCACAATCCTTCTTG--TTGAAG-AT-AACAT-CA-CA---ATTACT-TCT-GGTA-GCATTG---AACTAAGAT-TAACAATA-CAGTAATAATT-TCAGACAAA
gi|15 : CATAA--GTAGGTGCAACT-TTGGTCCCCTTTGCTGTTCCCTAAC---TTTGG--AGGTAATG-GTGGTCG-CAAAAAGCAAATGAA-TTG-T-TCTCAAGAACCAATTTAAG-TC-CTT----CCA-AAATAAA-ATTCTGTTCAAAAT-T
gi|16 : TG--AGCTGGAT-G-GCA-TGATTTA-AAAT----TC--AAAA--ATTGA-----TGTGTGTCC---GTTGTTGTTTT-AAAATACATCGG---TTAGGATTTTAGTT--CCATGCTTT-ATCAATTTAGT--GTCCAAAATGAAATT-GAAGT---ATT-----ACTGTATTCCA-tcgggattattt
gi|17 : ATG-GAAGTTTCGTTT---CTTTG-ATTCCA-TGGGTGAA-TTTTAATCGAT-CGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAT--GAAACAAGTACAGACA------TATTTT
gi|18 : GATTTCACAAGAATGA-CACAG-TTCC-GTACAATAAAAAA-CTGTAAGCGCTT
gi|19 : atatatatatttccaaagaataattgggtttggtcagaaataaataactttatattTCCTT-TGC--CACA-TCGG--CAAAA--TTGAC-ACAA-GGGAATTGGCGGTCGC-TG
gi|2 : attctccgttccacataacataaatgcggGAATTCACAAGAATGA-CACAGGT-CA-GT-CAATAAAAAA-CTGTAAGCGCTTC--CCCG-C--CATGTT--GGCT-CTTCAGAC---AAGTAT--TTGTTTTTGAATAGTTAA-CGTTGCTTG--AA----ATACAACCGTA-ATTGTTTA-TGACTGTTA---TTGTTTA--AACGTCATGA-CGTCACA--CCTCCGTG--T-GAGT-ATGAACGT-CA-CAAT-ATTACTCTCT-GGTAAGCATTGAAAACA-AGGACCTGACAATAACAGT--TTAAA-TAAGATAAATCATCTCACTTATAATTCAAGTTTTAGGGTTAAACAGTTT-ATAA-AGA-GTCCTCCTTTGATAA-ACGTGCT-AAT-TCTGCCT-CT--CGT--CACATTTTGATCAAAAGGGGAAAA-TTTTGAATTTCCCTT-TGCGCCACATTCGGGGCAAGAGAATGACTGCAGCGGGTATT-GCGGACGCCTGGGAT-TCGAATCCTGTTGTTT-AAGCACTCGAAATCTTGCG-ATGAACGTCTTCC-G-TTTGTACCACA-ATTCGTAAGAACTCTT-GCATGTG---GG--CATATAACACAATATATCTAAATTTTTCAACTTTTTGGCATTCATATTGGCG-TTTGTGG-TGA-TTTTCCTTCGGTTTTTTAAATAATGACG-TTTTCCC-TTCTTCA-TATACTCCACACGTTTTCCACATTGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTT-CCTTCTGCTATCTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTCGC-AAGATTGGGAAAAA-AAACGTTTTG--CGGT--CTATGATGTTA-GATTTC-TGGGTTTGGTGG-TAACGAACCAGC-GAATTTTTGCTGTCTTACAGTCCATTAAGGTTTTTTGT--TGG--GTTTTGCGCCCGTA---TATCT-GATTCTAGGAATGTCCA-TGC-TTTTTT-GA-C--TATATATTTCTTAAATAAAGGTATGTTCCGGTAATGTTGCGTCCTACTATCCACACCGTAACGATTCGTCCCATACGTTTAGAC-----T-CAGGTG-T-CAAATATTTACTACG-A-G-ATGAATCAGTCT-GGATA-GATGAAT-G-GTAGTCGTG-ACGCTTGGT-AAAGCTGCGAGAT-GTGTATATATATATATATATTACC--AAATTAACTGAGATGGTG-GTATCCGCAGTC-CTCTTGC-AAAATATGTCTGTACTTA----TTTCGTTCGCCATTTTTT-AGAG--TTATA-CATCTG----AAAATGCGAAGTT-CGTTTTTCCATTATATTCCATTGG-TGAA-TTA-AATCGATTCGTGTAAA-TTGTTCAAACAGAGTATG-AATG-GT-TA-CTTTTTGATCTTTCC-TGAGTCCAAAAAAAATGAAACAATCATCGAGA------TATC-TTTCCAG-T-TAACTGAAAT--------ATA-TGAACAGAATTTTCAATCAAA---TTTTGGTAGCTGGC--TATCATTTTCTCCTCCAAAAAT-CCATTACAAGG---GCGTAT--GTGGGGGCTACT-TTAGT-TCCATTGCTGTTCCCTTTA----CTGG-AA-ATAGTA-TTCATTGTCAAAATGAAAATG-G-TTGTT-TCTCAAGTACAAA-GTTAA-TCACTTC-------AAATA------------------TGAACTCTTTTGAAAAAACGCTCACTTACTGGCATTCGAT-AATTTCTCCAACCAGAAAATTCTATGGCCTC-AAG--TCCTAAGTTGTGT-GGAAATATAT-GT--ATATAG-CTTACCACATCCACAAACTGA-TAGAAT-TGTCTCG---TTAACTGTTTTGGGCAATATGCATTAAGAAAATCCATATCATCCCCTTTGTAAAAGCTGTTTAACAAATTAACACAGTGGCTTC-GTAAAATGT-TAGAAAATTACTAAGTCTTTGTGTACT
gi|20 : tttataatGTAAAACTTGT---ATAAATTCACAAAGTG-CTTCAGTGAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|21 : GAAACCACAAGAATGA-CACAG-T-CC-ATACAATAA
gi|24 : ttaacacacgagtaaatgtataatttaaaatATACATG-AAGTTCTA-------TTG----TCATATTGGCG-TTTGGTG-TGATTTTCCTTCC
gi|25 : gTCTTGGGTT--GTGGGTAACG-ACCAGCGGAATGTTT-CTGT-TTA-AGT-CA
gi|26 : ACATTCGG--CAAAATGTTGACAGC-ACGGG
gi|3 : AGAATTCACAAGAAT-A-CACAG-T-CCCGT-CAATAAAAAC-TTGTAAGCGCTTT--C--G-CGCCATGTT--GGCTACTTCAGAC---AG---T--TTGTTTT-AGATAGTTAAGCGTTG-T-GTCAA----ATACAACGTTA-ATTGTTTACTGAC-GTT-----TGTTTATCGACGTCATGA-CGTCATAATC-TCCATG--TTGAGT--T-GACGT-CAACAATTATTACT-TCTTGGTA-GCATTGAAAA-C-AGG-C-TGACAATA-CAGTAATTAAAATCAGATAA-TCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTT-ATAATAAGAGTCCT---TTGATAACACGTGCT-A-T-TC---AT-CCTCCGTTCCACATTT-G--TAAA-GGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGCATCTCGAATC-TGTTGTTTTATGCACTCGAACTCTTGCGAATGA--GTCTTCCCG-TTTGT--C-CATAT--GTA--AACTCTTT-CATGTA---GGG-TATATAGCACGATATATC-AAATTTTT--C--TTTTGCAATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT---ATA-TGATGTTTTTCCCCTTCTTCAATATACTC-ACACGTT--CCAgt
gi|4 : tata-AGGAT-TAACAATA-CAGTAATTGAA-TCCGACAAATCATACCACTTATA--------------GTTAAATAGTTTTATAA-AGAAATAATTTTTTGATAA-AAACAAT-A-TGTC---ATCCT--CGTTCCACACTTTG--TAAAA
gi|4 : TCCTCGTTC--CACACTTTG--TAAAATGT-------AATG----TT-GCAGACGC-TGGAATCTGGAATC-TTTTGTTT-GTATACTCGAACCCGTGTG-ATGA--GTCTTCCCG-CTTGT--T-CA-AT--GTC-GAATTATTTGCATATGCATGGGTCATATAGCACAATATAGC-AGATTTTG--AC-CTTTGC-ATTCATGTTGGCG-TTTGATATTGT-TTTCCATCCAGTTTTT--AATA-CGATG-TTTTCCCCTTCTTCAATATAATC-CTATGTT--CTACATCACGGGTTTCCTCATTTAGAAATGT----------TTTTTATG-------------TGT-G----ATATTC-TTTTAACGTTTGGTGCTTGCCTTCTGCTATTTATGtgtaatgttgcagacgctggaatctggaatcttttgtttgtatactcgaacccgtgtgatgagtcttcccgcttgttcaatgtcgaattatttgcatatgcatgggtcatatagcacaatatagcagattttgacctttgcattcatgttggcgtttgatattgttttccatccagtttttaatacgatgttttccccttcttcaatataatcctatgttctacatcacgggtttcctcatttagaaatgttttttatgtgtgatattcttttaacgtttggtgcttgccttctgctatttatg
gi|5 : aggattaacaatacagtaattgaatccgacaaatcataccacttatagttaaatagttttataaagaaataattttttgataaaaacaatatgtcaGTTTC---CCCTAA---T-TTT-GA-TCTAAGGATGT--ACTGC-TTTTTT-AA-A--CCTGCATT-----TA---AGGT-TGTCTGG-TA-----------TA--ATGTACATCG----AATT-------T-CGTTCAT-TCGTAGT-CA-GCA---CAAA-A-C-AATA-----GCAT--A---ATCT-CAGTAAATTGAA--G-C-AAT-GTT-A-ATTTAGTGATG--TGCCGGAT-G--CA-AGATTTA-AAAT----CC--CAAT--AC-GA------GTGTATGC---GTC-C-------------------------------TCGT-CGCCCTCTTTTCATGA--T-AGTTCATCTA----GCAATA--AAGTT--GTCTT--CATTGC-TTTCA-TTG-TAAAATGT-AATCGAT-CGTGTAAAATTGTTCTAGTAGATT-TGAA-TTTCAGTAGCCTTT---CTT---CTTGA-TCAAAAAAAATGAAAACAATCATCGAAATCAGATTATCTTTT-CAG-T-TTCT--GAAT--------CTACTGAACA-AATCTT-----AAA---TT---GTA-CTGGT--TA-CATTT
gi|6 : tttgtGAAATCACAATAATGA-CACAG-T-CT-GTGCAATAAAAAAGCTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---G--TTGTATT-GAATACTTTA-CGTTGCT-G--AA----ATACAACGCTA-TTTGTTTA-TGAC-ATTA---TTGTTTAT-GACGTCATG-ACATAACAATCCTTCGTG--TAGATT-AT-AACGT-CA-CAATTATTACT-TTT-GGTA-GCATTG-GAAAC-AGGAC-TGACAATA-CAGCAATTA
gi|7 : agttatcgtacttacggcagatgatcgttaatttgcaggaaattccttccaagatcctttccattccatttgattctgctaccgatttagatctggtctgtgacatcctagtcttgcaccaaagttcaatatatattttccaaagaatatggtttggtacataaataaatattttaaaatAGAAAACACAATAATGAACACAG-T-CT-GTGCAATAAAAAG-CTGTAAGCGCTTTTCC--GCC--CATGTTGGGGCTCCTTCAGACAGGAG---TGGTTGTATT-GAATACTTTA-CGGTGGT-G--AAAGACATACAACCATATATTG--TAGGGACAATTATTTTTGTTGATGGACGTC-TG-ACATAACAATCCT-CGTGTTTTAGGTCATCAACGTCCA-CAA
gi|8 : tggacatgtctatgcgtactacggcaatgatcgtaatttgcggggaggattccttccaagatccggtttccattccatttgctctgcattaccgatttgtagtctggcctgacacctagtcttgcaccaaagtcctcattatattttcccaaagaatcatggttgggtacataaatagaaatatctttaaGATTTTGAGACTGTT--TTAATATAGGT--AAATAAATCTTCTGAGCGGTTCCAAAAATATTGTGGTTGCTTGGATT--ATG---------CAAACGGAATATCG-TTGT-TTATACG-CATT-TTCTTCTTCATGACGGGAGTTTC------GTA---A-GGTAGA-TATTGGTATGCTCCGTGC-TTTTGTAGA-A--GCGTCATT-----GAT-GAGGT-TTTCTGGATAATGTTGTCGTTTA--AGGTATTCTTT--CAATTCCTCCAAT-CTTTTAGACCGTAAT-GAAGTATT-CTTT-A-TAACTGCA----CAT--ATCTGTCC-GGCCATGTTGTAT-G-A-AAT-GTT-ACGTTTGGC-ATG-----AGGAA-G-GCAGAGA--AA-AAAT----TCTTAAAT--GCCG
gi|9 : ACT-TTG-TCCCCATTGCTGTTCC--TTA---TTTGG-----TAATGATTGGTCG--GAAAAGCAAATG-AATTG-TATCTCA-GAACCAATTATAAGTC-CTTC---CCATAAATAAATCTTCTTTTGA-------AACTTTGTC------ATATCCAGGTATT----TCCGGATTATT--TCCATCCAAAAG--TTTACGGCTTCTAAGATTCCCAA-TCCTGTAGG-AATGTTCGGTCAATATAAA-TAATAACATCCA-AAAGTGAC--AAGTCTGGTTC--GTTTGA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGTACTTACTGCAAAGAATCGAAATTTTGCCTGAAATTTCTTCCAATATCCTTTCCATTCCGTTAAAATCTGCTACCGATTTTGCACGAGTTTGTGACATCTTGGTCGTGTATCAAATTTAAAATAATTTAGTAAAAGGAATCCAGTATTTGATACAGTAAATATTTCCAATAATAAAATTCAAAAAACACAA
Unaligned ( gi|22 ): TTCGTAAGAGGAATTCTATTTGATACAGTAAATATATGCATTGCTAAAGTCAAGAAATACAAA
Unaligned ( gi|23 ): TTCCATGCTTTATCACTTTAATGTCCAAAAAATTAAATTGAAGTATTACTGTATTCCA
Alignments
lowQualScore : 1 111 111111 111111111111 11 1 11111111 11 11 1 1 2 1 1 1 1 1 11111 111 1 11 11 1 11 1 1 1 11 1 1111 1 11 11 111 11 22222 111111 111 1 1 1 11 1 1 222 11 33 1 11 11 11 1 11 222222222 1 1 2222 111 2222222222222222 1111 1111111 222222 11 1111 11 444444444444444444 11 111 111 1 1111 11 11 222222 111 3333333333333333333333333333333 1 11 22 2222 111 1111 1 1 1 1 1 2 111 22 222222 111 33333333 11 111 22 1 111 11 1111 44444 1 2 111 1 1 5555555555555555555555555555555 222 11 1 11 1 11 1 1 1 111 1 1 22 1 11 222 11
lowQualScore : 1 5 5 5 5 9 6 99 99 6 99 99 3 111 555555 6 6 3 6 555555555555 1 00 3 3 77777777 44 3 44 3 99 3 6 3 6 6 5 8 8 88 0 777 6 6 8 0 0 3 0 0 5 0 3 66 0 2 22222 777 0 33 3 3 33 3 3 8 11 1 99 3 7 5 1 8 8 1 2 0 0 6 9 0 33 2 2 0 7777 0 33 22 55 777 22 2 8 77777 222222 8 8 8 777 0 0 2 2 3 0 33 6 7 3 6 3 6 111 88 11 7 3 88 88 55 2 7 3 33 111111111 2 1 0 8 3 5 8 6666 888 3 9999999999999999 8 1 1 1111 8 0 7777777 44 111111 22 8 8 6 0 333 11 22 6666 3 11 8 88 11 0 8 0 000000000000000000 11 0 3 8 8 1 88 444 8 8 3 88 222 1 6 6 6 11 8 7777 11 11 3 888888 3 777 0000000000000000000000000000000 2 666 0 0 0 33 3 22 1111 8 333 7777 44 8 0 0 0 5 0 0 3 3 3 3 2 2 777 3 3 2 3 77 333333 0 2 111 0 3 66666666 7 2 22 33 777 3 0 999 55 0 3 6 999 6 33 0 1 8 6 4444 22222 8 44 0 1 1 0 111 3 1 1 3 0 0 1111111111111111111111111111111 333 22 0 3 33 3 0 33 2 0 0 0 777 55 2 0 55 0 6 00 3 88 1 555 1 6 7 6 88
lowQualScore : . . . . . . . .. .. . .. .. . ... ...... . . . . ............ . .. . . ........ .. . .. . .. . . . . . . . . .. . ... . . . . . . . . . . . .. . . ..... ... . .. . . .. . . . .. . .. . . . . . . . . . . . . . .. . . . .... . .. .. .. ... .. . . ..... ...... . . . ... . . . . . . .. . . . . . . ... .. .. . . .. .. .. . . . .. ......... . . . . . . . .... ... . ................ . . . .... . . ....... .. ...... .. . . . . ... .. .. .... . .. . .. .. . . . .................. .. . . . . . .. ... . . . .. ... . . . . .. . .... .. .. . ...... . ... ............................... . ... . . . .. . .. .... . ... .... .. . . . . . . . . . . . . . ... . . . . .. ...... . . ... . . ........ . . .. .. ... . . ... .. . . . ... . .. . . . . .... ..... . .. . . . . ... . . . . . . ............................... ... .. . . .. . . .. . . . . ... .. . . .. . . .. . .. . ... . . . . ..
lowQualScore : 0 7 7 7 7 3 7 22 22 7 22 22 3 777 888888 7 7 7 7 888888888888 0 22 2 3 77777777 33 2 77 7 22 5 7 3 7 7 6 0 0 88 6 333 7 7 0 8 0 2 0 0 5 0 2 88 0 0 00000 555 0 88 2 2 88 2 3 0 00 7 22 2 5 2 0 0 0 0 5 0 0 5 2 0 88 5 5 0 8888 0 88 55 88 555 55 5 0 66666 222222 0 0 0 000 0 0 5 5 2 0 88 7 3 3 7 3 7 000 00 77 3 3 33 33 77 0 3 2 88 555555555 5 0 0 0 2 0 0 2222 222 5 4444444444444444 0 4 0 2222 0 6 0000000 22 000000 22 0 0 4 8 444 00 88 8888 8 66 0 88 00 8 0 8 444444444444444444 00 8 8 0 8 4 88 222 0 0 2 88 777 0 7 7 0 88 0 0000 00 00 8 222222 2 555 2222222222222222222222222222222 5 000 8 0 2 88 2 55 2222 0 888 4444 66 0 0 0 0 5 0 0 2 2 2 2 5 5 555 2 2 5 2 55 000000 8 5 000 2 2 22222222 0 5 55 55 555 2 2 000 55 0 2 7 000 5 88 2 0 0 4 8888 66666 0 66 6 4 0 0 000 2 0 0 2 0 0 1111111111111111111111111111111 000 55 0 2 88 2 0 88 5 0 0 0 000 88 5 0 88 0 7 77 3 00 0 777 0 7 3 7 33
consensus : AGAANTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGNTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATGAACGTCACAATCCTCCGTG--TTGAGT-AT-AACGT-CA-CAATTATTACT-TCT-GGTA-GCATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGCGCT-A-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTG-TTTATGCACTCGAACTCTTGCG-ATGA--GTCTTCCCG-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACAATATATC-AAATTTTN--ACTTTT--GCAATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTC--AAGATTGGGAAA-AAA--CGTTTTG--CGGTCCCTATGATGTTATGATTTCTTGGGTT--GTGG-TAACGA-CCAGCGGAATNTTT-CTGT-TTACAGTC-ATTANNCTTCTTCGTGACGGGAGTTTC-CCCGTA---T-TCT-GAT-CTAGGNATGTCCANTGC-TTTTTT-GA-A--CCGNCATTT-----ATGA-GGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTACACCGT--CAATTCNTCCAAT-CGTTTAGA-TC--GTAGT-CAAGTA-T-CGNNATNACTGCA-AGCAT--ATCNGTCT-GGCTANGTTGAAT-G-G-AAT-GTT-ACGTTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-CTCTTGC-AAAATACGTCTGTACTTA----TTTCGTTCGCCATTTTTT-ATGA--TTAGT-CATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-TGAA-TTT-AATCGATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAA---TTTTGGTAGCTGGC-ATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGT-GCGTAT--GTGGGNGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGG-AAGATAATG-TTCGTCGTCAAAATGNAAATGGATTG-T-TCTCAAGNACNAATTTTAA-TC-CTTC---CCATAAATAAATNTTCTNTTNAAAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACATCCA-AAACTGACTAGAGT-TGTTTCGGGTTTAACTGTTTTGGG-AATATG-ATTAAGAAAATCCATATCATCCCCTTNGTAAAACTTGTT--ATAAATTNACAAAGTGGCTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
Reference ( family-450 ) : AGAANTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGNTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATGAACGTCACAATCCTCCGTG--TTGAGT-AT-AACGT-CA-CAATTATTACT-TCT-GGTA-GCATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGCGCT-A-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTG-TTTATGCACTCGAACTCTTGCG-ATGA--GTCTTCCCG-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACAATATATC-AAATTTTN--ACTTTT--GCAATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTC--AAGATTGGGAAA-AAA--CGTTTTG--CGGTCCCTATGATGTTATGATTTCTTGGGTT--GTGG-TAACGA-CCAGCGGAATNTTT-CTGT-TTACAGTC-ATTANNCTTCTTCGTGACGGGAGTTTC-CCCGTA---T-TCT-GAT-CTAGGNATGTCCANTGC-TTTTTT-GA-A--CCGNCATTN-----ATGA-GGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTACACCGT--CAATTCNTCCAAT-CGTTTAGA-TC--GTAGT-CAAGTA-T-CANAATTACTACA-AGCAT--ATCNGTCT-GGCTANGTTGAAT-G-G-AAT-GTT-ACGTTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-CTCTTGC-AAAATACGTCTGTACTTA----TTTCGTTCGCCATTTTTT-ATGA--TTAGT-CATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-TGAA-TTT-AATCGATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAA---TTTTGGTAGCTGGC-ATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGT-GCGTAT--GTGGGNGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGG-AAGATAATG-TTCGTCGTCAAAATGNAAATGG-TTG-T-TCTCAAGNACNAATTTTAA-TC-CTTC---CCATAAATAAATNTTCTNTTNAAAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACATCCA-AAACTGACTAGAGT-TGTTTCGGGTTTAACTGTTTTGGG-AATATG-ATTAAGAAAATCCATATCATCCCCTTNGTAAAACTTGTT--ATAAATTNACAAAGTGGCTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|1 : AGAATTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGTTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATAAACGTCACAATCCTCCGTG--TTAAGT-AT-GACGT-CA-CAATTATTACT-TCT-GGT--CCATTGAAAAAC-AGGAC-TGAC--TA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGTGCTAA-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAATTTTTGAATTTTCCTT-TGC--AACATTCGG--CAAAATGTTGACTGCACGGGGTATT-GCGGA-GC-TGGCATCTCGAATC-TGTTG-TTTATG-ACTCGAACTC-TGCG-ATGA--GTCTT--CGTTTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTA---GGG-CATATAA-ACAATATATC-AAATTTTC--A-TTTT--GCAATTCATATTGGCGTTTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTT-AATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGTGGGTAAGTATTCTTTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATG---ATATAGAGGTGTTGAACAAGGTTT--CAGATTTTCAGATTGTTC--AAGATTGGG-AA-AAA--CGTTTTG--CGGTCTTTATGAT-TTATGATTTCTTGGGTT--GTGG-TA--GA-CCAGCGGAATTTTT-CTGT-TTA-AGTC-ATCAGG-TTTTTTGT-------GTTTT-TCCGTA---T-TCT-GAT-CTAGGAATGTCCATTGCTTTTTTT-GATA--CCAGCATTT-----ATAA-GGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTAAACCGT---AATTCGTCCATA-CGTTTAGA-TC---TAGTCCCAGTG-T-CAGAA--ACTATAGAGCAT--ATCCGTCT-GGCTAGATTGAAT-G-G-TAT-GTT-ACGCTTGGT-ATG--TGCCGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-TCCTTGCAAAAATATGTCTGTACTTA----TTTC-TTCACCATTTTTT-ATGA--TTAGTACATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-TGAA-TTT-AATCTATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCC--AAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAGAATTTTTGGTAGCTGGCTATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGTCGCGTAT--GTGGGGGCTACTCTTAGTTCCCATTGCTGTTCCCTTTA---TCTGGAAAGATAGTA-TTCCTTGTCAAAATGAAAATGG-TTG-T-TCTCAAGTACAAGTTTTAA-TC-CTTCTNNNNNNNNNNNNNNNNNNNNNNNNNAATATGAACTTTTTTG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACAT-CA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTGTGGG-AATATG-ATTAAGAAAATCTATATCATCCC--TAGTAAAACTTGTT--ATAGATTTACAAAGTGGGTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|10 : TGT-TTACA-TT-GTT-TTCTTCTTCATGACGGGAGTTTC----GTAAGGT-T---GAT-ATTGGTATGTTCTGTGC-TTTTGT--A-ATTCCGTCATTG-----ATGA-GGT-TTTCTGGATAATGTTGTCTTTTA--AGGTATTCTTT--CAATTCCTCCAAT-CTTTTTTA-TC--GTAAT-GAAGTA-TCCGTTATTATTGCACAACTT--ATCGGTCTGGGCCATGTTGTATCGCG-AAT-GTTAACGTTT--T--TG--TATGGGATAG-GCtgaagagggtccggcaataattggacgtaatttaagatccattggttttttggattttaacgtacgtactccggcaatttttgatactttcctggatttgttttcatctatggatttctggtacaccataaaaattactagttttcgcttcaaagctagttaaaaaatcaaactcattgttcgt
gi|12 : tcgtAAACAGTCATCAAGG------TATCTTTTCCAGATGTTTTTGATGTTATCAGCAATGTTAAATCGCACTCAC-ATT-AA---TTTTAA-----GGC-AAA-GA--CTCTCCACTAAATATCCTAGTGTAAGTGT-GC-CATTGGTCGGTGCTATT-TTGGTTCCCATAGCTGTTCCCTTTATTTTTTGG-----TAATG-TTTATCGTCAAAATTGAA
gi|13 : aAAT-TGAACTTTTT-G-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCT-TGGCCTC-AAC--TCCTAAGTTGTGT-GG-AATATTT-G---ATATAGACTTACCACATCAA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTTTGGG--ATATG-ATT
gi|14 : CTTT--C--G-C--CATGTT--AGTT-CTCCAGAC---AG---T--TTGTTTT-GAATA-----------------------ATACAATGCTA----------------------TTGTTTAT----------AACGTCACAATCCTTCTTG--TTGAAG-AT-AACAT-CA-CA---ATTACT-TCT-GGTA-GCATTG---AACTAAGAT-TAACAATA-CAGTAATAATT-TCAGACAAA
gi|15 : CATAA--GTAGGTGCAACT-TTGGTCCCCTTTGCTGTTCCCTAAC---TTTGG-AGG-TAATG-GTGGTCG-CAAAAAGCAAATGAATTG-T-TCTCAAGAACCAATTTAAG-TC-CTT----CCA-AAATAAA-ATTCTGTTCAAAAT-T
gi|16 : TG--AGCTGGAT-G-GCA-TGATTTA-AAAT----TC--AAAA--ATTGA-----TGTGTGTCC---GTTGTTGTTTT-AAAATACATCGG---TTAGGATTTTAGTT--CCATGCTTT-ATCAATTTAGT--GTCCAAAATGAAATT-GAAGT---ATT-----ACTGTATTCCA-tcgggattattt
gi|17 : ATG-GAAGTTTCGTTT---CTTTG-ATTCCA-TGGGTGAA-TTTTAATCGAT-CGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAT--GAAACAAGTACAGACA------TATTTT
gi|18 : GATTTCACAAGAATGA-CACAG-TTCC-GTACAATAAAAAA-CTGTAAGCGCTT
gi|19 : atatatatatttccaaagaataattgggtttggtcagaaataaataactttatattTCCTT-TGC--CACA-TCGG--CAAAA--TTGAC-ACAA-GGGAATTGGCGGTCGC-TG
gi|2 : attctccgttccacataacataaatgcggGAATTCACAAGAATGA-CACAGGT-CA-GT-CAATAAAAAA-CTGTAAGCGCTTC--CCCG-C--CATGTT--GGCT-CTTCAGAC---AAGTAT--TTGTTTTTGAATAGTTAA-CGTTGCTTG--AA----ATACAACCGTA-ATTGTTTA-TGACTGTTA---TTGTTTA--AACGTCATGA-CGTCACA--CCTCCGTG--T-GAGT-ATGAACGT-CA-CAAT-ATTACTCTCT-GGTAAGCATTGAAAACA-AGGACCTGACAATAACAGT--TTAAA-TAAGATAAATCATCTCACTTATAATTCAAGTTTTAGGGTTAAACAGTTT-ATAA-AGA-GTCCTCCTTTGATAA-ACGTGCT-AAT-TCTGCCT-CT--CGT--CACATTTTGATCAAAAGGGGAAAA-TTTTGAATTTCCCTT-TGCGCCACATTCGGGGCAAGAGAATGACTGCAGCGGGTATT-GCGGACGCCTGGGAT-TCGAATCCTGTTG-TTTAAGCACTCGAAATCTTGCG-ATGAACGTCTTCC-G-TTTGTACCACA-ATTCGTAAGAACTCTT-GCATGTG---GG--CATATAACACAATATATCTAAATTTTTCAACTTTTTGGCA-TTCATATTGGCG-TTTGTGG-TGA-TTTTCCTTCGGTTTTTTAAATAATGACG-TTTTCCC-TTCTTCA-TATACTCCACACGTTTTCCACATTGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTT-CCTTCTGCTATCTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTCGCAAGATTGGGAAA-AAAAACGTTTTG--CGGTC--TATGATGTTA-GATTTCT-GGGTTTGGTGG-TAACGAACCAGCG-AATTTTTGCTGTCTTACAGTCCATTAAGGTTTTTTGT--TGGGTTTTGCGCCCGTA---TATCT-GATTCTAGGAATGTCCA-TGC-TTTTTT-GA-C--TATATATTTCTTAAATAAAGGTATGTTCCGGTAATGTTGCGTCCTACTATCCACACCGTAACGATTCGTCCCATACGTTTAGACTCAGGT-GT-CAAATA-T------TTACTACG-AG-ATGAATCAGTCT-GGATA-GATGAAT-G-GTAGTCGTG-ACGCTTGGT-AAAGCTGCGAGAT-GTGTATATATATATATATATTACC--AAATTAACTGAGATGGTG-GTATCCGCAGTC-CTCTTGC-AAAATATGTCTGTACTTA----TTTCGTTCGCCATTTTTT-AGAG--TTATA-CATCTG----AAAATGCGAAGTT-CGTTTTTCCATTATATTCCATTGG-TGAA-TTA-AATCGATTCGTGTAAA-TTGTTCAAACAGAGTATG-AATG-GT-TA-CTTTTTGATCTTTCC-TGAGTCCAAAAAAAATGAAACAATCATCGAGA------TATC-TTTCCAG-T-TAACTGAAAT--------ATA-TGAACAGAATTTTCAATCAAA---TTTTGGTAGCTGGC--TATCATTTTCTCCTCCAAAAAT-CCATTACAAGG---GCGTAT--GTGGGGGCTACT-TTAGT-TCCATTGCTGTTCCCTTTA----CTGG-AA-ATAGTA-TTCATTGTCAAAATGAAAATGG-TTGTT-TCTCAAGTACAAA-GTTAA-TCACTTC-------AAATA------------------TGAACTCTTTTGAAAAAACGCTCACTTACTGGCATTCGAT-AATTTCTCCAACCAGAAAATTCTATGGCCTC-AAG--TCCTAAGTTGTGT-GGAAATATAT-GT--ATATAG-CTTACCACATCCACAAACTGA-TAGAAT-TGTCTCG---TTAACTGTTTTGGGCAATATGCATTAAGAAAATCCATATCATCCCCTTTGTAAAAGCTGTTTAACAAATTAACACAGTGGCTTC-GTAAAATGT-TAGAAAATTACTAAGTCTTTGTGTACT
gi|20 : tttataatGTAAAACTTGT---ATAAATTCACAAAGTG-CTTCAGTGAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|21 : GAAACCACAAGAATGA-CACAG-T-CC-ATACAATAA
gi|24 : ttaacacacgagtaaatgtataatttaaaatATACATG-AAGTTCTA------TT--G----TCATATTGGCG-TTTGGTG-TGATTTTCCTTCC
gi|25 : gTCTTGGGTT--GTGGGTAACGA-CCAGCGGAATGTTT-CTGT-TTA-AGTC-A
gi|26 : ACATTCGG--CAAAATGTTGACAGC-ACGGG
gi|3 : AGAATTCACAAGAAT-A-CACAG-T-CCCGT-CAATAAAAAC-TTGTAAGCGCTTT--C--G-CGCCATGTT--GGCTACTTCAGAC---AG---T--TTGTTTT-AGATAGTTAAGCGTTG-T-GTCAA----ATACAACGTTA-ATTGTTTACTGAC-GTT-----TGTTTATCGACGTCATGA-CGTCATAATC-TCCATG--TTGAGT--T-GACGT-CAACAATTATTACT-TCTTGGTA-GCATTGAAAA-C-AGG-C-TGACAATA-CAGTAATTAAAATCAGATAA-TCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTT-ATAATAAGAGTCCT---TTGATAACACGTGCT-A-T-TC---AT-CCTCCGTTCCACATTT-G--TAAA-GGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGCATCTCGAATC-TGTTGTTTTATGCACTCGAACTCTTGCGAATGA--GTCTTCCCG-TTTGT--C-CATAT--GTA--AACTCTTT-CATGTA---GGG-TATATAGCACGATATATC-AAATTTTT---CTTTT--GCAATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT---ATA-TGATGTTTTTCCCCTTCTTCAATATACTC-ACACGTT--CCAgt
gi|4 : tata-AGGAT-TAACAATA-CAGTAATTGAA-TCCGACAAATCATACCACTTATA--------------GTTAAATAGTTTTATAA-AGAAATAATTTTTTGATAA-AAACAAT-A-TGTC---ATCCT--CGTTCCACACTTTG--TAAAA
gi|4 : TCCTCGTTC--CACACTTTG--TAAAATGT-------AATG----TT-GCAGACGC-TGGAATCTGGAATC-TTTTG-TTTGTATACTCGAACCCGTGTG-ATGA--GTCTTCCCG-CTTGT--T-CA-AT--GTC-GAATTATTTGCATATGCATGGGTCATATAGCACAATATAGC-AGATTTTG--ACCTTT--GC-ATTCATGTTGGCG-TTTGATATTGT-TTTCCATCCAGTTTTT--AATA-CGATG-TTTTCCCCTTCTTCAATATAATC-CTATGTT--CTACATCACGGGTTTCCTCATTTAGAAATGT----------TTTTTATG-------------TGT-G----ATATTC-TTTTAACGTTTGGTGCTTGCCTTCTGCTATTTATGtgtaatgttgcagacgctggaatctggaatcttttgtttgtatactcgaacccgtgtgatgagtcttcccgcttgttcaatgtcgaattatttgcatatgcatgggtcatatagcacaatatagcagattttgacctttgcattcatgttggcgtttgatattgttttccatccagtttttaatacgatgttttccccttcttcaatataatcctatgttctacatcacgggtttcctcatttagaaatgttttttatgtgtgatattcttttaacgtttggtgcttgccttctgctatttatg
gi|5 : aggattaacaatacagtaattgaatccgacaaatcataccacttatagttaaatagttttataaagaaataattttttgataaaaacaatatgtcaGTTTC-CCCTAA---T-TTT-GAT-CTAAGGATGT--ACTGC-TTTTTT-AA-A--CCTGCATTT-----A--A-GGT-TGTCTGG-TA-----------TA--ATGTACATCG----AATT-------T-CGTTCAT--TC--GTAGT-CA-GCA---CAAAACAAT-----AGCAT--A---ATCT-CAGTAAATTGAA--G-C-AAT-GTT-A-ATTTAGTGATG--TGCCGGAT-G--CA-AGATTTA-AAAT----CC--CAAT--AC-GA------GTGTATGC---GTC-C-------------------------------TCGT-CGCCCTCTTTTCATGA--T-AGTTCATCTA----GCAATA--AAGTT--GTCTT--CATTGC-TTTCA-TTG-TAAAATGT-AATCGAT-CGTGTAAAATTGTTCTAGTAGATT-TGAA-TTTCAGTAGCCTTT---CTT---CTTGA-TCAAAAAAAATGAAAACAATCATCGAAATCAGATTATCTTTT-CAG-T-TTCT--GAAT--------CTACTGAACA-AATCTT-----AAA---TT---GTA-CTGGT--TA-CATTT
gi|6 : tttgtGAAATCACAATAATGA-CACAG-T-CT-GTGCAATAAAAAAGCTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---G--TTGTATT-GAATACTTTA-CGTTGCT-G--AA----ATACAACGCTA-TTTGTTTA-TGAC-ATTA---TTGTTTAT-GACGTCATG-ACATAACAATCCTTCGTG--TAGATT-AT-AACGT-CA-CAATTATTACT-TTT-GGTA-GCATTG-GAAAC-AGGAC-TGACAATA-CAGCAATTA
gi|7 : agttatcgtacttacggcagatgatcgttaatttgcaggaaattccttccaagatcctttccattccatttgattctgctaccgatttagatctggtctgtgacatcctagtcttgcaccaaagttcaatatatattttccaaagaatatggtttggtacataaataaatattttaaaatAGAAAACACAATAATGAACACAG-T-CT-GTGCAATAAAAAG-CTGTAAGCGCTTTTCC--GCC--CATGTTGGGGCTCCTTCAGACAGGAG---TGGTTGTATT-GAATACTTTA-CGGTGGT-G--AAAGACATACAACCATATATTG--TAGGGACAATTATTTTTGTTGATGGACGTC-TG-ACATAACAATCCT-CGTGTTTTAGGTCATCAACGTCCA-CAA
gi|8 : tggacatgtctatgcgtactacggcaatgatcgtaatttgcggggaggattccttccaagatccggtttccattccatttgctctgcattaccgatttgtagtctggcctgacacctagtcttgcaccaaagtcctcattatattttcccaaagaatcatggttgggtacataaatagaaatatctttaaGATTTTGAGACTGTTTT-AATATAGGTAAATAAA--TCTTCTGAGCGGTTCCAAAAATATTGTGGTTGCTTGGATT--ATG---------CAAACGGAATATCG-TTGT-TTATACGC-ATT-TTCTTCTTCATGACGGGAGTTTC----GTA---A-GGTAGAT-ATTGGTATGCTCCGTGC-TTTTGTAGA-A--GCGTCATTG-----ATGA-GGT-TTTCTGGATAATGTTGTCGTTTA--AGGTATTCTTT--CAATTCCTCCAAT-CTTTTAGA-CC--GTAAT-GAAGTATT-CTTTATAACTGCA---CAT--ATCTGTCC-GGCCATGTTGTAT-G-A-AAT-GTT-ACGTTTGGC-ATG-----AGGAA-G-GCAGAGA--AA-AAAT----TCTTAAAT--GCCG
gi|9 : ACT-TTG-TCCCCATTGCTGTTCC--TTA---TTTGG-----TAATGATTGGTCG--GAAAAGCAAATGAATTG-TATCTCA-GAACCAATTATAAGTC-CTTC---CCATAAATAAATCTTCTTTTGA-------AACTTTGTC------ATATCCAGGTATT----TCCGGATTATT--TCCATCCAAAAG--TTTACGGCTTCTAAGATTCCCAA-TCCTGTAGG-AATGTTCGGTCAATATAAA-TAATAACATCCA-AAAGTGAC--AAGTCTGGTTCG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGTACTTACTGCAAAGAATCGAAATTTTGCCTGAAATTTCTTCCAATATCCTTTCCATTCCGTTAAAATCTGCTACCGATTTTGCACGAGTTTGTGACATCTTGGTCGTGTATCAAATTTAAAATAATTTAGTAAAAGGAATCCAGTATTTGATACAGTAAATATTTCCAATAATAAAATTCAAAAAACACAA
Unaligned ( gi|22 ): TTCGTAAGAGGAATTCTATTTGATACAGTAAATATATGCATTGCTAAAGTCAAGAAATACAAA
Unaligned ( gi|23 ): TTCCATGCTTTATCACTTTAATGTCCAAAAAATTAAATTGAAGTATTACTGTATTCCA
Alignments
lowQualScore : 1 111 111111 111111111111 11 1 11111111 11 11 1 1 2 1 1 1 1 1 11111 111 1 11 11 1 11 1 1 1 11 1 1111 1 11 11 111 11 22222 111111 111 1 1 1 11 1 1 222 11 33 1 11 11 11 1 11 222222222 1 1 2222 111 2222222222222222 1111 1111111 222222 11 1111 11 333333333333333333 11 111 111 1 1111 11 11 222222 111 3333333333333333333333333333333 1 11 22 2222 111 1111 1 1 1 1 1 2 111 22 222222 111 33333333 11 111 22 1 111 11 1111 44444 1 1 111 1 1 5555555555555555555555555555555 222 11 1 11 1 11 1 1 1 111 1 1 22 1 11 222 11
lowQualScore : 1 5 5 5 5 9 6 99 99 6 99 99 3 111 555555 6 6 3 6 555555555555 1 00 3 3 77777777 44 3 44 3 99 3 6 3 6 6 5 8 8 88 0 777 6 6 8 0 0 3 0 0 5 0 3 66 0 2 22222 777 0 33 3 3 33 3 3 8 11 1 99 3 7 5 1 8 8 1 2 0 0 6 9 0 33 2 2 0 7777 0 33 22 55 777 22 2 8 77777 222222 8 8 8 777 0 0 2 2 3 0 33 6 7 3 6 3 6 111 88 11 7 3 88 88 55 2 7 3 33 111111111 2 1 0 8 3 5 8 6666 888 3 9999999999999999 8 1 1 1111 8 0 7777777 44 000000 22 8 8 6 0 333 11 22 6666 3 11 8 88 11 0 8 0 777777777777777777 11 0 3 8 8 1 88 444 8 8 3 88 222 1 6 6 6 11 8 7777 11 11 3 888888 3 777 0000000000000000000000000000000 2 666 0 0 0 33 3 22 1111 8 333 7777 44 8 0 0 0 5 0 0 3 3 3 3 2 2 777 3 3 2 3 77 333333 0 2 111 0 3 66666666 7 2 22 33 777 3 0 999 55 0 3 6 999 6 33 0 1 8 6 4444 22222 8 44 0 1 1 5 111 3 1 1 3 0 0 1111111111111111111111111111111 333 22 0 3 33 3 0 33 2 0 0 0 777 55 2 0 55 0 6 00 3 88 1 555 1 6 7 6 88
lowQualScore : . . . . . . . .. .. . .. .. . ... ...... . . . . ............ . .. . . ........ .. . .. . .. . . . . . . . . .. . ... . . . . . . . . . . . .. . . ..... ... . .. . . .. . . . .. . .. . . . . . . . . . . . . . .. . . . .... . .. .. .. ... .. . . ..... ...... . . . ... . . . . . . .. . . . . . . ... .. .. . . .. .. .. . . . .. ......... . . . . . . . .... ... . ................ . . . .... . . ....... .. ...... .. . . . . ... .. .. .... . .. . .. .. . . . .................. .. . . . . . .. ... . . . .. ... . . . . .. . .... .. .. . ...... . ... ............................... . ... . . . .. . .. .... . ... .... .. . . . . . . . . . . . . . ... . . . . .. ...... . . ... . . ........ . . .. .. ... . . ... .. . . . ... . .. . . . . .... ..... . .. . . . . ... . . . . . . ............................... ... .. . . .. . . .. . . . . ... .. . . .. . . .. . .. . ... . . . . ..
lowQualScore : 0 7 7 7 7 3 7 22 22 7 22 22 3 777 888888 7 7 7 7 888888888888 0 22 2 3 77777777 33 2 77 7 22 5 7 3 7 7 6 0 0 88 6 333 7 7 0 8 0 2 0 0 5 0 2 88 0 0 00000 555 0 88 2 2 88 2 3 0 00 7 22 2 5 2 0 0 0 0 5 0 0 5 2 0 88 5 5 0 8888 0 88 55 88 555 55 5 0 66666 222222 0 0 0 000 0 0 5 5 2 0 88 7 3 3 7 3 7 000 00 77 3 3 33 33 77 0 3 2 88 555555555 5 0 0 0 2 0 0 2222 222 5 4444444444444444 0 4 0 2222 0 6 0000000 22 666666 22 0 0 4 8 444 00 88 8888 8 66 0 88 00 8 0 8 666666666666666666 00 8 8 0 8 4 88 222 0 0 2 88 777 0 7 7 0 88 0 0000 00 00 8 222222 2 555 2222222222222222222222222222222 5 000 8 0 2 88 2 55 2222 0 888 4444 66 0 0 0 0 5 0 0 2 2 2 2 5 5 555 2 2 5 2 55 000000 8 5 000 2 2 22222222 0 5 55 55 555 2 2 000 55 0 2 7 000 5 88 2 0 0 4 8888 66666 0 66 6 4 0 5 000 2 0 0 2 0 0 1111111111111111111111111111111 000 55 0 2 88 2 0 88 5 0 0 0 000 88 5 0 88 0 7 77 3 00 0 777 0 7 3 7 33
consensus : AGAANTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGNTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATGAACGTCACAATCCTCCGTG--TTGAGT-AT-AACGT-CA-CAATTATTACT-TCT-GGTA-GCATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGCGCT-A-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTG-TTTATGCACTCGAACTCTTGCG-ATGA--GTCTTCCCG-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACAATATATC-AAATTTTN--ACTTTT--GCAATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTC--AAGATTGGGAAA-AAA--CGTTTTG--CGGTCCCTATGATGTTATGATTTCTTGGGTT--GTGG-TAACGA-CCAGCGGAATNTTT-CTGT-TTACAGTC-ATTANNCTTCTTCGTGACGGGAGTTTC-CCCGTA---T-TCT-GAT-CTAGGNATGTCCANTGC-TTTTTT-GA-A--CCGNCATTT-----ATGA-GGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTACACCGT--CAATTCNTCCAAT-CGTTTAGA-TC--GTAGT-CAAGTA-T-CGNNATNACTGCA-AGCAT--ATCNGTCT-GGCTANGTTGAAT-G-G-AAT-GTT-ACGTTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-CTCTTGC-AAAATACGTCTGTACTTA----TTTCGTTCGCCATTTTTT-ATGA--TTAGT-CATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-TGAA-TTT-AATCGATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAA---TTTTGGTAGCTGGC-ATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGT-GCGTAT--GTGGGNGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGG-AAGATAATG-TTCGTCGTCAAAATGNAAATGGATTG-T-TCTCAAGNACNAATTTTAA-TC-CTTC---CCATAAATAAATNTTCTNTTNAAAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACATCCA-AAACTGACTAGAGT-TGTTTCGGGTTTAACTGTTTTGGG-AATATG-ATTAAGAAAATCCATATCATCCCCTTNGTAAAACTTGTT--ATAAATTNACAAAGTGGCTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
Reference ( family-450 ) : AGAANTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGNTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATGAACGTCACAATCCTCCGTG--TTGAGT-AT-AACGT-CA-CAATTATTACT-TCT-GGTA-GCATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGCGCT-A-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTG-TTTATGCACTCGAACTCTTGCG-ATGA--GTCTTCCCG-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACAATATATC-AAATTTTN--ACTTTT--GCAATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTC--AAGATTGGGAAA-AAA--CGTTTTG--CGGTCCCTATGATGTTATGATTTCTTGGGTT--GTGG-TAACGA-CCAGCGGAATNTTT-CTGT-TTACAGTC-ATTANNCTTCTTCGTGACGGGAGTTTC-CCCGTA---T-TCT-GAT-CTAGGNATGTCCANTGC-TTTTTT-GA-A--CCGNCATTT-----ATGA-GGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTACACCGT--CAATTCNTCCAAT-CGTTTAGA-TC--GTAGT-CAAGTA-T-CGNNATNACTGCA-AGCAT--ATCNGTCT-GGCTANGTTGAAT-G-G-AAT-GTT-ACGTTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-CTCTTGC-AAAATACGTCTGTACTTA----TTTCGTTCGCCATTTTTT-ATGA--TTAGT-CATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-TGAA-TTT-AATCGATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAA---TTTTGGTAGCTGGC-ATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGT-GCGTAT--GTGGGNGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGG-AAGATAATG-TTCGTCGTCAAAATGNAAATGGATTG-T-TCTCAAGNACNAATTTTAA-TC-CTTC---CCATAAATAAATNTTCTNTTNAAAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACATCCA-AAACTGACTAGAGT-TGTTTCGGGTTTAACTGTTTTGGG-AATATG-ATTAAGAAAATCCATATCATCCCCTTNGTAAAACTTGTT--ATAAATTNACAAAGTGGCTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|1 : AGAATTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGTTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATAAACGTCACAATCCTCCGTG--TTAAGT-AT-GACGT-CA-CAATTATTACT-TCT-GGT--CCATTGAAAAAC-AGGAC-TGAC--TA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGTGCTAA-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAATTTTTGAATTTTCCTT-TGC--AACATTCGG--CAAAATGTTGACTGCACGGGGTATT-GCGGA-GC-TGGCATCTCGAATC-TGTTG-TTTATG-ACTCGAACTC-TGCG-ATGA--GTCTT--CGTTTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTA---GGG-CATATAA-ACAATATATC-AAATTTTC--A-TTTT--GCAATTCATATTGGCGTTTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTT-AATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGTGGGTAAGTATTCTTTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATG---ATATAGAGGTGTTGAACAAGGTTT--CAGATTTTCAGATTGTTC--AAGATTGGG-AA-AAA--CGTTTTG--CGGTCTTTATGAT-TTATGATTTCTTGGGTT--GTGG-TA--GA-CCAGCGGAATTTTT-CTGT-TTA-AGTC-ATCAGG-TTTTTTGT-------GTTTT-TCCGTA---T-TCT-GAT-CTAGGAATGTCCATTGCTTTTTTT-GATA--CCAGCATTT-----ATAA-GGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTAAACCGT---AATTCGTCCATA-CGTTTAGA-TC---TAGTCCCAGTG-T-CAGAA--ACTATAGAGCAT--ATCCGTCT-GGCTAGATTGAAT-G-G-TAT-GTT-ACGCTTGGT-ATG--TGCCGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-TCCTTGCAAAAATATGTCTGTACTTA----TTTC-TTCACCATTTTTT-ATGA--TTAGTACATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-TGAA-TTT-AATCTATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCC--AAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAGAATTTTTGGTAGCTGGCTATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGTCGCGTAT--GTGGGGGCTACTCTTAGTTCCCATTGCTGTTCCCTTTA---TCTGGAAAGATAGTA-TTCCTTGTCAAAATGAAAATGG-TTG-T-TCTCAAGTACAAGTTTTAA-TC-CTTCTNNNNNNNNNNNNNNNNNNNNNNNNNAATATGAACTTTTTTG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACAT-CA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTGTGGG-AATATG-ATTAAGAAAATCTATATCATCCC--TAGTAAAACTTGTT--ATAGATTTACAAAGTGGGTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|10 : TGT-TTACA-TT-GTT-TTCTTCTTCATGACGGGAGTTTC----GTAAGGT-T---GAT-ATTGGTATGTTCTGTGC-TTTTGT--A-ATTCCGTCATTG-----ATGA-GGT-TTTCTGGATAATGTTGTCTTTTA--AGGTATTCTTT--CAATTCCTCCAAT-CTTTTTTA-TC--GTAAT-GAAGTA-TCCGTTATTATTGCACAACTT--ATCGGTCTGGGCCATGTTGTATCGCG-AAT-GTTAACGTTT--T--TG--TATGGGATAG-GCtgaagagggtccggcaataattggacgtaatttaagatccattggttttttggattttaacgtacgtactccggcaatttttgatactttcctggatttgttttcatctatggatttctggtacaccataaaaattactagttttcgcttcaaagctagttaaaaaatcaaactcattgttcgt
gi|12 : tcgtAAACAGTCATCAAGG------TATCTTTTCCAGATGTTTTTGATGTTATCAGCAATGTTAAATCGCACTCAC-ATT-AA---TTTTAA-----GGC-AAA-GA--CTCTCCACTAAATATCCTAGTGTAAGTGT-GC-CATTGGTCGGTGCTATT-TTGGTTCCCATAGCTGTTCCCTTTATTTTTTGG-----TAATG-TTTATCGTCAAAATTGAA
gi|13 : aAAT-TGAACTTTTT-G-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCT-TGGCCTC-AAC--TCCTAAGTTGTGT-GG-AATATTT-G---ATATAGACTTACCACATCAA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTTTGGG--ATATG-ATT
gi|14 : CTTT--C--G-C--CATGTT--AGTT-CTCCAGAC---AG---T--TTGTTTT-GAATA-----------------------ATACAATGCTA----------------------TTGTTTAT----------AACGTCACAATCCTTCTTG--TTGAAG-AT-AACAT-CA-CA---ATTACT-TCT-GGTA-GCATTG---AACTAAGAT-TAACAATA-CAGTAATAATT-TCAGACAAA
gi|15 : CATAA--GTAGGTGCAACT-TTGGTCCCCTTTGCTGTTCCCTAAC---TTTGG-AGG-TAATG-GTGGTCG-CAAAAAGCAAATGAATTG-T-TCTCAAGAACCAATTTAAG-TC-CTT----CCA-AAATAAA-ATTCTGTTCAAAAT-T
gi|16 : TG--AGCTGGAT-G-GCA-TGATTTA-AAAT----TC--AAAA--ATTGA-----TGTGTGTCC---GTTGTTGTTTT-AAAATACATCGG---TTAGGATTTTAGTT--CCATGCTTT-ATCAATTTAGT--GTCCAAAATGAAATT-GAAGT---ATT-----ACTGTATTCCA-tcgggattattt
gi|17 : ATG-GAAGTTTCGTTT---CTTTG-ATTCCA-TGGGTGAA-TTTTAATCGAT-CGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAT--GAAACAAGTACAGACA------TATTTT
gi|18 : GATTTCACAAGAATGA-CACAG-TTCC-GTACAATAAAAAA-CTGTAAGCGCTT
gi|19 : atatatatatttccaaagaataattgggtttggtcagaaataaataactttatattTCCTT-TGC--CACA-TCGG--CAAAA--TTGAC-ACAA-GGGAATTGGCGGTCGC-TG
gi|2 : attctccgttccacataacataaatgcggGAATTCACAAGAATGA-CACAGGT-CA-GT-CAATAAAAAA-CTGTAAGCGCTTC--CCCG-C--CATGTT--GGCT-CTTCAGAC---AAGTAT--TTGTTTTTGAATAGTTAA-CGTTGCTTG--AA----ATACAACCGTA-ATTGTTTA-TGACTGTTA---TTGTTTA--AACGTCATGA-CGTCACA--CCTCCGTG--T-GAGT-ATGAACGT-CA-CAAT-ATTACTCTCT-GGTAAGCATTGAAAACA-AGGACCTGACAATAACAGT--TTAAA-TAAGATAAATCATCTCACTTATAATTCAAGTTTTAGGGTTAAACAGTTT-ATAA-AGA-GTCCTCCTTTGATAA-ACGTGCT-AAT-TCTGCCT-CT--CGT--CACATTTTGATCAAAAGGGGAAAA-TTTTGAATTTCCCTT-TGCGCCACATTCGGGGCAAGAGAATGACTGCAGCGGGTATT-GCGGACGCCTGGGAT-TCGAATCCTGTTG-TTTAAGCACTCGAAATCTTGCG-ATGAACGTCTTCC-G-TTTGTACCACA-ATTCGTAAGAACTCTT-GCATGTG---GG--CATATAACACAATATATCTAAATTTTTCAACTTTTTGGCA-TTCATATTGGCG-TTTGTGG-TGA-TTTTCCTTCGGTTTTTTAAATAATGACG-TTTTCCC-TTCTTCA-TATACTCCACACGTTTTCCACATTGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTT-CCTTCTGCTATCTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTCGCAAGATTGGGAAA-AAAAACGTTTTG--CGGTC--TATGATGTTA-GATTTCT-GGGTTTGGTGG-TAACGAACCAGCG-AATTTTTGCTGTCTTACAGTCCATTAAGGTTTTTTGT--TGGGTTTTGCGCCCGTA---TATCT-GATTCTAGGAATGTCCA-TGC-TTTTTT-GA-C--TATATATTTCTTAAATAAAGGTATGTTCCGGTAATGTTGCGTCCTACTATCCACACCGTAACGATTCGTCCCATACGTTTAGACTCAGGT-GT-CAAATA-T------TTACTACG-AG-ATGAATCAGTCT-GGATA-GATGAAT-G-GTAGTCGTG-ACGCTTGGT-AAAGCTGCGAGAT-GTGTATATATATATATATATTACC--AAATTAACTGAGATGGTG-GTATCCGCAGTC-CTCTTGC-AAAATATGTCTGTACTTA----TTTCGTTCGCCATTTTTT-AGAG--TTATA-CATCTG----AAAATGCGAAGTT-CGTTTTTCCATTATATTCCATTGG-TGAA-TTA-AATCGATTCGTGTAAA-TTGTTCAAACAGAGTATG-AATG-GT-TA-CTTTTTGATCTTTCC-TGAGTCCAAAAAAAATGAAACAATCATCGAGA------TATC-TTTCCAG-T-TAACTGAAAT--------ATA-TGAACAGAATTTTCAATCAAA---TTTTGGTAGCTGGC--TATCATTTTCTCCTCCAAAAAT-CCATTACAAGG---GCGTAT--GTGGGGGCTACT-TTAGT-TCCATTGCTGTTCCCTTTA----CTGG-AA-ATAGTA-TTCATTGTCAAAATGAAAATGG-TTGTT-TCTCAAGTACAAA-GTTAA-TCACTTC-------AAATA------------------TGAACTCTTTTGAAAAAACGCTCACTTACTGGCATTCGAT-AATTTCTCCAACCAGAAAATTCTATGGCCTC-AAG--TCCTAAGTTGTGT-GGAAATATAT-GT--ATATAG-CTTACCACATCCACAAACTGA-TAGAAT-TGTCTCG---TTAACTGTTTTGGGCAATATGCATTAAGAAAATCCATATCATCCCCTTTGTAAAAGCTGTTTAACAAATTAACACAGTGGCTTC-GTAAAATGT-TAGAAAATTACTAAGTCTTTGTGTACT
gi|20 : tttataatGTAAAACTTGT---ATAAATTCACAAAGTG-CTTCAGTGAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|21 : GAAACCACAAGAATGA-CACAG-T-CC-ATACAATAA
gi|24 : ttaacacacgagtaaatgtataatttaaaatATACATG-AAGTTCTA------TT--G----TCATATTGGCG-TTTGGTG-TGATTTTCCTTCC
gi|25 : gTCTTGGGTT--GTGGGTAACGA-CCAGCGGAATGTTT-CTGT-TTA-AGTC-A
gi|26 : ACATTCGG--CAAAATGTTGACAGC-ACGGG
gi|3 : AGAATTCACAAGAAT-A-CACAG-T-CCCGT-CAATAAAAAC-TTGTAAGCGCTTT--C--G-CGCCATGTT--GGCTACTTCAGAC---AG---T--TTGTTTT-AGATAGTTAAGCGTTG-T-GTCAA----ATACAACGTTA-ATTGTTTACTGAC-GTT-----TGTTTATCGACGTCATGA-CGTCATAATC-TCCATG--TTGAGT--T-GACGT-CAACAATTATTACT-TCTTGGTA-GCATTGAAAA-C-AGG-C-TGACAATA-CAGTAATTAAAATCAGATAA-TCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTT-ATAATAAGAGTCCT---TTGATAACACGTGCT-A-T-TC---AT-CCTCCGTTCCACATTT-G--TAAA-GGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGCATCTCGAATC-TGTTGTTTTATGCACTCGAACTCTTGCGAATGA--GTCTTCCCG-TTTGT--C-CATAT--GTA--AACTCTTT-CATGTA---GGG-TATATAGCACGATATATC-AAATTTTT---CTTTT--GCAATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT---ATA-TGATGTTTTTCCCCTTCTTCAATATACTC-ACACGTT--CCAgt
gi|4 : tata-AGGAT-TAACAATA-CAGTAATTGAA-TCCGACAAATCATACCACTTATA--------------GTTAAATAGTTTTATAA-AGAAATAATTTTTTGATAA-AAACAAT-A-TGTC---ATCCT--CGTTCCACACTTTG--TAAAA
gi|4 : TCCTCGTTC--CACACTTTG--TAAAATGT-------AATG----TT-GCAGACGC-TGGAATCTGGAATC-TTTTG-TTTGTATACTCGAACCCGTGTG-ATGA--GTCTTCCCG-CTTGT--T-CA-AT--GTC-GAATTATTTGCATATGCATGGGTCATATAGCACAATATAGC-AGATTTTG--ACCTTT--GC-ATTCATGTTGGCG-TTTGATATTGT-TTTCCATCCAGTTTTT--AATA-CGATG-TTTTCCCCTTCTTCAATATAATC-CTATGTT--CTACATCACGGGTTTCCTCATTTAGAAATGT----------TTTTTATG-------------TGT-G----ATATTC-TTTTAACGTTTGGTGCTTGCCTTCTGCTATTTATGtgtaatgttgcagacgctggaatctggaatcttttgtttgtatactcgaacccgtgtgatgagtcttcccgcttgttcaatgtcgaattatttgcatatgcatgggtcatatagcacaatatagcagattttgacctttgcattcatgttggcgtttgatattgttttccatccagtttttaatacgatgttttccccttcttcaatataatcctatgttctacatcacgggtttcctcatttagaaatgttttttatgtgtgatattcttttaacgtttggtgcttgccttctgctatttatg
gi|5 : aggattaacaatacagtaattgaatccgacaaatcataccacttatagttaaatagttttataaagaaataattttttgataaaaacaatatgtcaGTTTC-CCCTAA---T-TTT-GAT-CTAAGGATGT--ACTGC-TTTTTT-AA-A--CCTGCATTT-----A--A-GGT-TGTCTGG-TA-----------TA--ATGTACATCG----AATT-------T-CGTTCAT--TC--GTAGT-CA-GCA---CAAAACAAT-----AGCAT--A---ATCT-CAGTAAATTGAA--G-C-AAT-GTT-A-ATTTAGTGATG--TGCCGGAT-G--CA-AGATTTA-AAAT----CC--CAAT--AC-GA------GTGTATGC---GTC-C-------------------------------TCGT-CGCCCTCTTTTCATGA--T-AGTTCATCTA----GCAATA--AAGTT--GTCTT--CATTGC-TTTCA-TTG-TAAAATGT-AATCGAT-CGTGTAAAATTGTTCTAGTAGATT-TGAA-TTTCAGTAGCCTTT---CTT---CTTGA-TCAAAAAAAATGAAAACAATCATCGAAATCAGATTATCTTTT-CAG-T-TTCT--GAAT--------CTACTGAACA-AATCTT-----AAA---TT---GTA-CTGGT--TA-CATTT
gi|6 : tttgtGAAATCACAATAATGA-CACAG-T-CT-GTGCAATAAAAAAGCTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---G--TTGTATT-GAATACTTTA-CGTTGCT-G--AA----ATACAACGCTA-TTTGTTTA-TGAC-ATTA---TTGTTTAT-GACGTCATG-ACATAACAATCCTTCGTG--TAGATT-AT-AACGT-CA-CAATTATTACT-TTT-GGTA-GCATTG-GAAAC-AGGAC-TGACAATA-CAGCAATTA
gi|7 : agttatcgtacttacggcagatgatcgttaatttgcaggaaattccttccaagatcctttccattccatttgattctgctaccgatttagatctggtctgtgacatcctagtcttgcaccaaagttcaatatatattttccaaagaatatggtttggtacataaataaatattttaaaatAGAAAACACAATAATGAACACAG-T-CT-GTGCAATAAAAAG-CTGTAAGCGCTTTTCC--GCC--CATGTTGGGGCTCCTTCAGACAGGAG---TGGTTGTATT-GAATACTTTA-CGGTGGT-G--AAAGACATACAACCATATATTG--TAGGGACAATTATTTTTGTTGATGGACGTC-TG-ACATAACAATCCT-CGTGTTTTAGGTCATCAACGTCCA-CAA
gi|8 : tggacatgtctatgcgtactacggcaatgatcgtaatttgcggggaggattccttccaagatccggtttccattccatttgctctgcattaccgatttgtagtctggcctgacacctagtcttgcaccaaagtcctcattatattttcccaaagaatcatggttgggtacataaatagaaatatctttaaGATTTTGAGACTGTTTT-AATATAGGTAAATAAA--TCTTCTGAGCGGTTCCAAAAATATTGTGGTTGCTTGGATT--ATG---------CAAACGGAATATCG-TTGT-TTATACGC-ATT-TTCTTCTTCATGACGGGAGTTTC----GTA---A-GGTAGAT-ATTGGTATGCTCCGTGC-TTTTGTAGA-A--GCGTCATTG-----ATGA-GGT-TTTCTGGATAATGTTGTCGTTTA--AGGTATTCTTT--CAATTCCTCCAAT-CTTTTAGA-CC--GTAAT-GAAGTATT-CTTTATAACTGCA---CAT--ATCTGTCC-GGCCATGTTGTAT-G-A-AAT-GTT-ACGTTTGGC-ATG-----AGGAA-G-GCAGAGA--AA-AAAT----TCTTAAAT--GCCG
gi|9 : ACT-TTG-TCCCCATTGCTGTTCC--TTA---TTTGG-----TAATGATTGGTCG--GAAAAGCAAATGAATTG-TATCTCA-GAACCAATTATAAGTC-CTTC---CCATAAATAAATCTTCTTTTGA-------AACTTTGTC------ATATCCAGGTATT----TCCGGATTATT--TCCATCCAAAAG--TTTACGGCTTCTAAGATTCCCAA-TCCTGTAGG-AATGTTCGGTCAATATAAA-TAATAACATCCA-AAAGTGAC--AAGTCTGGTTCG
blockSeqs : T A G T C A G TC CC C GC GG A AGG GTAT T G A G GTGAAAGAC C TA T C AATTATTT CG A AA T TT T C G C A T C T AA A ACT C A A C A C T T T A CC C T AAT TGC C TC T T AT A . G GC T GG G T C A G C G C C T C T A AC C C . ACCA T TC AG TG CAT GT C T TCAAC TGGCA . T T TAA A T C C A C TT G A . G . G GAT TC GC A T AA AG CC G T T TG GTAACGAA G T G C C G C AAGG GAC A GCCCGTATATCT T T T TCTG . AATT GT TCTTAA TG A A A TTT CT TT TAAC C AA A AC AG . TCCGTTATTATTGCACA GA G G T T TC CG C A G GA GCT G A T T TT T ATTA TT TA T GATGGT T GCA GTTGTTTTAAAATACATCGGTTAGGAT G TCG C AT T TC AAAT C TTC TTTC TA T G A T T A A A A A T G G TGA T T G A AT TCAGAT C ATG T TATCAGCA T G CA CA . T TAG A T T C GT A TG T . T TTTT AGG A TA T T G A TT A A C T G A CCAAAATAAAATTCTGTTCAAAAT TGA GG T T AT A T AT G A A G TCA AC C C CT C G CA C CT T TTA A G A C AA
blockSeqs : T . . . . A . . . . . . C . TGG . G A . CTTGAA G A T G TGTTA GG A A C . T . C . . T . . A A CA . . . A A . . . . A TT . T ATG . . . T T . A . . . T . T A C T . . C C . . C T . . C C . C . . G G . G C . GAC GCAA . . . A . . C C A . . . . . . . . T A . . . . A . T . GGTAACGA G G . . C G . TTC GAC T CCCTAATTTT . A A TCCG . AGAA TA G TA . . G TCC . CA TC G CA . A . . TTCTTTATAACTGCA . A . A A T GT . . A A T T . . G TA . . . . T T T . CTCTTGCAAAATATGTCTGTACTTA G CG . . T C . . TC TT TA . . . . . . T A A A T G G . T T G A TG . C T T . C G C T . T TA . . T . . G . T . C T AAA . GG T A C A TA A T A T . . CCCATAAATAAATCTTCTTTTGA G G . T . A . . G . . . T C C . T . . . . . C . . . .
blockSeqs : A . . . . G . . . . . . . . T . C T . TGTCAA T A T . ATTA A A A C . A . . . . . . . A . AC . . . . . . . . . . . . C AT . . . . . . . . . T . T T C T . . A . . . T G . . C . . T . . . T . . C . TC GCA . . . . . . . C . . . . . . . A . . T C . TTC T A GTAAGGTT . A G CCA . GAC TG T TG . . A GTT . CA TC C AA . A . . TTTACTACGA . T . T A T C . . G A A G . . . TT . . . . C . . . C G T . . . . . . T T A . . . . . . . . . . . . . . . . . A . . . T . . . . . A . . . . . . . . G . C T . . CA . T A . T . A C . . . CAAATA C . . . . . . . . . . . . A C . C .
blockSeqs : T . . . . G . . . . . . . . T . C T . CTGAA C T . . GTT G . A T . T . . . . . . . A . C . . . . . C . T . T . . . . A G . . . . . . . GTAAGGTA . T T AC . AAA GT G . . . . . . TT . . . . . . . CAAAACAATA . . . . T . A . . . . T C . . . . . . . . . . . . C . . . . . . . GG . A C
blockSeqs : A . . . . . . . . . . . . . G . . . . . A . . . . . . A . . . . . . . . . . . . . . . A . .
blockSeqs : A . . . . .
blockSeqCons : TGAA******** GTTA**** A* A* AC*** GCA*** GCCTAANTTT****** TC** TCCAACTACGA******* N** T** T*** CA *****
originalCons : AGAANTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGCT-G--AA----ATACAACGNTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATGAACGTCACAATCCTCCGTG--TTGAGT-AT-AACGT-CA-CAATTATTACT-TCT-GGTA-GCATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGCGCT-A-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTG-TTTATGCACTCGAACTCTTGCG-ATGA--GTCTTCCCG-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACAATATATC-AAATTTTN--ACTTTT--GCAATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTC--AAGATTGGGAAA-AAA--CGTTTTG--CGGTCCCTATGATGTTATGATTTCTTGGGTT--GTGG-TAACGA-CCAGCGGAATNTTT-CTGT-TTACAGTC-ATTANNCTTCTTCGTGACGGGAGTTTC-CCCGTA---T-TCT-GAT-CTAGGNATGTCCANTGC-TTTTTT-GA-A--CCGNCATTT-----ATGA-GGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTACACCGT--CAATTCNTCCAAT-CGTTTAGA-TC--GTAGT-CAAGTA-T-CGNNATNACTGCA-AGCAT--ATCNGTCT-GGCTANGTTGAAT-G-G-AAT-GTT-ACGTTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-CTCTTGC-AAAATACGTCTGTACTTA----TTTCGTTCGCCATTTTTT-ATGA--TTAGT-CATCTA----GAAATG-GAAGTT-CGTTTT--CATTGTATTCCA-TGG-TGAA-TTT-AATCGATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAA---TTTTGGTAGCTGGC-ATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGT-GCGTAT--GTGGGNGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGG-AAGATAATG-TTCGTCGTCAAAATGNAAATGGATTG-T-TCTCAAGNACNAATTTTAA-TC-CTTC---CCATAAATAAATNTTCTNTTNAAAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACATCCA-AAACTGACTAGAGT-TGTTTCGGGTTTAACTGTTTTGGG-AATATG-ATTAAGAAAATCCATATCATCCCCTTNGTAAAACTTGTT--ATAAATTNACAAAGTGGCTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
finalCons : AGAANTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-CGTTGTGAA--------ATACAACGNTA-ATTGTTTA-TGACGTTA----TTGTTTAT-GACGTCATGA-CGTCACAATCCTCCGTG--TTGAGT-AT-AACGT-CA-CAATTATTACT-TCT-GGTA-GCATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGCGCT-A-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTG-TTTATGCACTCGAACTCTTGCG-ATGA--GTCTTCCCG-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACAATATATC-AAATTTTAC---TTTTGCA---TTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTC--AAGATTGGGAAA-AAA--CGTTTTG--CGGTCCCTATGATGTTATGATTTCTTGGGTT--GTGG-TAACGA-CCAGCGGAATNTTT-CTGT-TTACAGTC-ATTANNCTTCTTCGTGACGGGAGTTTCGCCTAANTTT------GAT-CTAGGNATGTCCANTGC-TTTTTT-GA-A--CCGNCATTT-----ATGA-GGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTACACCGTC--AATTCNTCCAAT-CGTTTAGA-TC--GTAGT-CAAGTATCCAACTACGA-------GCAT--ATCNGTCT-GGCTANGTTGAAT-GN--AAT-GTT-ACGTTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-CTCTTGC-AAAATACGTCTGTACTTA----TTTCGTTCGCCATTTTTT-ATGA--TTAGT-CATCTA----GAAATG-GAAGTT--GTTT---CATTGCATTCCA-TGG-TGAA-TTT-AATCGATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAA---TTTTGGTAGCTGGC-ATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGT-GCGTAT--GTGGGNGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGG-----TAATG-TTCGTCGTCAAAATGNAAATGGATTG-T-TCTCAAGNACNAATTTTAA-TC-CTTC---CCATAAATAAATNTTCTNTTNAAAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACATCCA-AAACTGACTAGAGT-TGTTTCGGGTTTAACTGTTTTGGG-AATATG-ATTAAGAAAATCCATATCATCCCCTTNGTAAAACTTGTT--ATAAATTNACAAAGTGGCTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGTACTTACTGCAAAGAATCGAAATTTTGCCTGAAATTTCTTCCAATATCCTTTCCATTCCGTTAAAATCTGCTACCGATTTTGCACGAGTTTGTGACATCTTGGTCGTGTATCAAATTTAAAATAATTTAGTAAAAGGAATCCAGTATTTGATACAGTAAATATTTCCAATAATAAAATTCAAAAAACACAA
Unaligned ( gi|22 ): TTCGTAAGAGGAATTCTATTTGATACAGTAAATATATGCATTGCTAAAGTCAAGAAATACAAA
Unaligned ( gi|23 ): TTCCATGCTTTATCACTTTAATGTCCAAAAAATTAAATTGAAGTATTACTGTATTCCA
Alignments
lowQualScore : 1 111 111111 222222222222 11 1 11111111 1 1 1 2 1 1 1 1 1 11111 111 1 11 11 1 11 1 1 1 11 1 1111 1 11 11 111 11 22222 11111 111 1 1 1 11 1 1 222 11 2222 222 1 11 11 1 11 22222222 1 1 2222 111 2222 1111 1111111 2222222222 11 1111 11 66666666666666666666666 11 11 111 1 1111 11 11 222222 111 3333333333333333333333333333333 1 11 22 11 444 111 11 1 1 1 1 1 2 1 111 22 222222 111 33333333 11 111 22 1 111 11 1111 44444 1 1 111 1 1 5555555555555555555555555555555 222 11 1 11 1 11 1 1 1 111 1 1 22 1 11 222 11
lowQualScore : 1 5 5 5 5 9 6 99 99 6 99 99 3 111 555555 6 6 3 777 555555555555 1 00 3 3 77777777 3 3 6 3 99 3 6 3 6 6 5 8 8 88 0 777 6 6 8 0 0 3 0 0 5 0 3 66 0 2 22222 777 0 33 3 3 33 3 3 8 11 1 99 3 7 5 1 8 8 1 2 0 0 6 9 0 33 2 2 0 7777 0 33 22 55 777 22 2 8 88888 77777 8 8 8 777 0 0 2 2 3 0 33 6 7 3 6 3 6 111 88 7777 555 3 88 55 2 7 3 33 44444444 2 1 0 8 3 888 6666 888 3 1111 11 8 1 1 1111 8 0 7777777 44 1111111111 8 6 0 333 11 22 6666 3 11 8 88 11 0 8 0 22222222222222222222222 11 0 3 8 8 1 66 99 8 8 3 88 222 1 6 6 6 11 8 7777 11 11 3 888888 3 777 0000000000000000000000000000000 2 666 0 0 0 33 3 22 6 11 111 8 8 444 00 8 0 0 0 5 0 0 3 5 3 2 2 777 2 3 2 3 77 333333 0 2 111 0 3 66666666 7 2 22 33 777 3 0 999 55 0 3 6 999 6 33 0 1 8 6 4444 88888 8 44 0 1 1 5 111 3 1 1 3 0 0 1111111111111111111111111111111 333 22 0 3 33 3 0 33 2 0 0 0 777 55 2 0 55 0 6 00 3 88 1 555 1 6 7 6 88
lowQualScore : . . . . . . . .. .. . .. .. . ... ...... . . . ... ............ . .. . . ........ . . . . .. . . . . . . . . .. . ... . . . . . . . . . . . .. . . ..... ... . .. . . .. . . . .. . .. . . . . . . . . . . . . . .. . . . .... . .. .. .. ... .. . . ..... ..... . . . ... . . . . . . .. . . . . . . ... .. .... ... . .. .. . . . .. ........ . . . . . ... .... ... . .... .. . . . .... . . ....... .. .......... . . . ... .. .. .... . .. . .. .. . . . ....................... .. . . . . . .. .. . . . .. ... . . . . .. . .... .. .. . ...... . ... ............................... . ... . . . .. . .. . .. ... . . ... .. . . . . . . . . . . . . ... . . . . .. ...... . . ... . . ........ . . .. .. ... . . ... .. . . . ... . .. . . . . .... ..... . .. . . . . ... . . . . . . ............................... ... .. . . .. . . .. . . . . ... .. . . .. . . .. . .. . ... . . . . ..
lowQualScore : 0 7 7 7 7 3 7 22 22 7 22 22 3 777 888888 7 7 7 555 000000000000 0 22 2 3 77777777 3 2 7 7 22 5 7 3 7 7 6 0 0 88 6 333 7 7 0 8 0 2 0 0 5 0 2 88 0 0 00000 555 0 88 2 2 88 2 3 0 00 7 22 2 5 2 0 0 0 0 5 0 0 5 2 0 88 5 5 0 8888 0 88 55 88 555 55 5 0 00000 00000 0 0 0 000 0 0 5 5 2 0 88 7 3 3 7 3 7 000 00 0000 777 3 33 77 0 3 2 88 55555555 5 0 0 0 2 888 2222 222 5 0000 66 0 4 0 2222 0 6 0000000 22 8888888888 0 4 8 444 00 88 8888 8 66 0 88 00 8 0 8 44444444444444444444444 00 8 8 0 8 4 88 00 0 0 2 88 777 0 7 7 0 88 0 0000 00 00 8 222222 2 555 2222222222222222222222222222222 5 000 8 0 2 88 2 55 5 22 000 0 0 000 44 0 0 0 0 5 0 0 2 5 2 5 5 555 5 2 5 2 55 000000 8 5 000 2 2 22222222 0 5 55 55 555 2 2 000 55 0 2 7 000 5 88 2 0 0 4 8888 00000 0 66 6 4 0 5 000 2 0 0 2 0 0 1111111111111111111111111111111 000 55 0 2 88 2 0 88 5 0 0 0 000 88 5 0 88 0 7 77 3 00 0 777 0 7 3 7 33
consensus : AGAANTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-C-GTTGC-TG--AA----ATACAACGNTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCAT-GACGTCACAATCCTCCGTG--TTGAGT-AT-AACGT-CA-CAATTATTACT-TCT-GGTA-GCATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGCGCT-A-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTG-TTTATGCACTCGAACTCTTGCG-ATGA--GTCTTCCCG-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACAATATATC-AAATTTT---ACTTTT--GCAATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTT--C-AAGATTGGG--AAA-AAACGTTTTG--CGGTCCCTATGATGTTATGATTTCTTGGGTT--GTGG-TAACG-ACCAGCGGAATNTTT-CTGT-TTACAGT-CATTANNCTTCTTCGTGACGGGAGTTTCGCC--TAANTTTGA-TCTAGGNATGTCCANTGC-TTTTTT-GA-A--CCGNCATTT-----AT-GAGGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTACACCGT--CAATTCNTCCAAT-CGTTTAGA-TC--GTAGT-CAAGTATC--N-----A-----ACTAC-G-AGCAT--ATCNGTCT-GGCTANGTTGAAT-G-NAAT-GTT-ACGTTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-CTCTTGC-AAAATACGTCTGTACTTA----TTTCGTTCGCCATTTTTT-ATGA--TTAGT-CATCTAGAAATG-GAAGTTC--G-T-TT---CATTGTATTCCA-TGG-TGAA-TTT-AATCGATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAA---TTTTGGTAGCTGGC-ATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGT-GCGTAT--GTGGGNGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGGAAA--TAATG-TTCGTCGTCAAAATGNAAATGGATTG-T-TCTCAAGNACNAATTTTAA-TC-CTTC---CCATAAATAAATNTTCTNTTNAAAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACATCCA-AAACTGACTAGAGT-TGTTTCGGGTTTAACTGTTTTGGG-AATATG-ATTAAGAAAATCCATATCATCCCCTTNGTAAAACTTGTT--ATAAATTNACAAAGTGGCTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
Reference ( family-450 ) : AGAANTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-C-GTTG--TG--AA----ATACAACGNTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCAT-GACGTCACAATCCTCCGTG--TTGAGT-AT-AACGT-CA-CAATTATTACT-TCT-GGTA-GCATTGAAAAAC-AGGAC-TGACAATA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGCGCT-A-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGNATCTCGAATC-TGTTG-TTTATGCACTCGAACTCTTGCG-ATGA--GTCTTCCCG-TTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTG---GGG-CATATAGCACAATATATC-AAATTTT---ACTTTT--GC-ATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTTCAATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTT--C-AAGATTGGG--AAA-AAACGTTTTG--CGGTCCCTATGATGTTATGATTTCTTGGGTT--GTGG-TAACG-ACCAGCGGAATNTTT-CTGT-TTACAGT-CATTANNCTTCTTCGTGACGGGAGTTTCGCC--TAANTTTGA-TCTAGGNATGTCCANTGC-TTTTTT-GA-A--CCGNCATTT-----AT-GAGGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTACACCGT--CAATTCNTCCAAT-CGTTTAGA-TC--GTAGT-CAAGTATC--C-----A-----ACTAC-G-AGCAT--ATCNGTCT-GGCTANGTTGAAT-G-NAAT-GTT-ACGTTTGGT-ATG--TGCNGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-CTCTTGC-AAAATACGTCTGTACTTA----TTTCGTTCGCCATTTTTT-ATGA--TTAGT-CATCTAGAAATG-GAAGTT---G-T-TT---CATTGCATTCCA-TGG-TGAA-TTT-AATCGATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAA---TTTTGGTAGCTGGC-ATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGT-GCGTAT--GTGGGNGCTACT-TTGGTCCCCATTGCTGTTCCCTTTA---TTTGG-----TAATG-TTCGTCGTCAAAATGNAAATGGATTG-T-TCTCAAGNACNAATTTTAA-TC-CTTC---CCATAAATAAATNTTCTNTTNAAAAT-TGAACTTTTTCG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACATCCA-AAACTGACTAGAGT-TGTTTCGGGTTTAACTGTTTTGGG-AATATG-ATTAAGAAAATCCATATCATCCCCTTNGTAAAACTTGTT--ATAAATTNACAAAGTGGCTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|1 : AGAATTCACAAGAATGA-CACAG-T-CC-GTACAATAAAAAA-CTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---T--TTGTTTT-GAATAGTTAA-C-GTTGC-TG--AA----ATACAACGTTA-ATTGTTTA-TGAC-GTTA---TTGTTTAT-GACGTCATAAACGTCACAATCCTCCGTG--TTAAGT-AT-GACGT-CA-CAATTATTACT-TCT-GGT--CCATTGAAAAAC-AGGAC-TGAC--TA-CAGTAATTAAA-TCAGATAAATCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTTTATAA-AGAAGTCCTCCTTTGATAA-ACGTGCTAA-T-TC---AT-CT--CGTTCCACATTTTG--TAAAAGGGGAAAATTTTTGAATTTTCCTT-TGC--AACATTCGG--CAAAATGTTGACTGCACGGGGTATT-GCGGA-GC-TGGCATCTCGAATC-TGTTG-TTTATG-ACTCGAACTC-TGCG-ATGA--GTCTT--CGTTTTGT--C-CA-AT--GTA-GAACTCTTTGCATGTA---GGG-CATATAA-ACAATATATC-AAATTTT---CATTTT--GCAATTCATATTGGCGTTTTGGTG-TGA-TTTCCTTCCGGTTTTT--AATA-TGATG-TTTTCCCCTTCTT-AATATACTC-ACACGTT--CCACATCGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGTGGGTAAGTATTCTTTTTAAGGTTGGGCGCTTGCCTTCTGCTATTTATG---ATATAGAGGTGTTGAACAAGGTTT--CAGATTTTCAGATTGTT--C-AAGATTGGG---AA-AAACGTTTTG--CGGTCTTTATGAT-TTATGATTTCTTGGGTT--GTGG-TA--G-ACCAGCGGAATTTTT-CTGT-TTA-AGT-CATCAGG-TTTTTTGT-------GTTTTTCC--GTATTCTGA-TCTAGGAATGTCCATTGCTTTTTTT-GATA--CCAGCATTT-----AT-AAGGT-TGTCCGGGTAATGTTGTCTCCTA--AGGTAAACCGT---AATTCGTCCATA-CGTTTAGA-TC---TAGTCCCAGTGTCAGA-----A-----ACTATAG-AGCAT--ATCCGTCT-GGCTAGATTGAAT-G-GTAT-GTT-ACGCTTGGT-ATG--TGCCGGAT-G-GCA-AGATTTA-AAAT----CC--AAAT--ACTGA-----TGTGTATCC---GTC-TCCTTGCAAAAATATGTCTGTACTTA----TTTC-TTCACCATTTTTT-ATGA--TTAGTACATCTAGAAATG-GAAGTTC--GTT-TT---CATTGTATTCCA-TGG-TGAA-TTT-AATCTATTCGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCC--AAAAA--GAAACAATCATCGAGA------TATCTTTTCCAG-T-TTCTTGAAAT--------ATATTGAACAGAATTTTC-ATCAAGAATTTTTGGTAGCTGGCTATA-CATTTTCTCCTCCAAAAATCCCATTACAAGGGTCGCGTAT--GTGGGGGCTACTCTTAGTTCCCATTGCTGTTCCCTTTA---TCTGGAAAGATAGTA-TTCCTTGTCAAAATGAAAATGG-TTG-T-TCTCAAGTACAAGTTTTAA-TC-CTTCTNNNNNNNNNNNNNNNNNNNNNNNNNAATATGAACTTTTTTG-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCTATGGCCTC-AAG--TCCTAAGTTGTGT-GG-AATATTT-GT--ATATAGACTTACCACAT-CA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTGTGGG-AATATG-ATTAAGAAAATCTATATCATCCC--TAGTAAAACTTGTT--ATAGATTTACAAAGTGGGTTCAGTAAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|10 : TGT-TTACA-T-TGTT-TTCTTCTTCATGACGGGAGTTTCG----TAAGGTTGA-TATTGGTATGTTCTGTGC-TTTTGT--A-ATTCCGTCATTG-----AT-GAGGT-TTTCTGGATAATGTTGTCTTTTA--AGGTATTCTTT--CAATTCCTCCAAT-CTTTTTTA-TC--GTAAT-GAAGTATC--C-----GTTATTATTGC-ACAACTT--ATCGGTCTGGGCCATGTTGTATCGCGAAT-GTTAACGTTT--T--TG--TATGGGATAG-GCtgaagagggtccggcaataattggacgtaatttaagatccattggttttttggattttaacgtacgtactccggcaatttttgatactttcctggatttgttttcatctatggatttctggtacaccataaaaattactagttttcgcttcaaagctagttaaaaaatcaaactcattgttcgt
gi|12 : tcgtAAACAGTCATCAAGG------TATCTTTTCCAGATGTTTTTGATGTTATCAGCAATGTTAAATCGCACTCAC-ATT-AA---TTTTAA-----GGC-AAA-GA--CTCTCCACTAAATATCCTAGTGTAAGTGT-GC-CATTGGTCGGTGCTATT-TTGGTTCCCATAGCTGTTCCCTTTATTTTTTGG-----TAATG-TTTATCGTCAAAATTGAA
gi|13 : aAAT-TGAACTTTTT-G-AAAAACGTTCACTTATT-GCATTCGAA-TATTTCTCCAACCAGAAA--TCT-TGGCCTC-AAC--TCCTAAGTTGTGT-GG-AATATTT-G---ATATAGACTTACCACATCAA-AAACTGACTAGAGT-TGTTTCAGGTTTAACTGTTTTGGG--ATATG-ATT
gi|14 : CTTT--C--G-C--CATGTT--AGTT-CTCCAGAC---AG---T--TTGTTTT-GAATA------------------------ATACAATGCTA----------------------TTGTTTAT-AACGT---------CACAATCCTTCTTG--TTGAAG-AT-AACAT-CA-CA---ATTACT-TCT-GGTA-GCATTG---AACTAAGAT-TAACAATA-CAGTAATAATT-TCAGACAAA
gi|15 : CATAA--GTAGGTGCAACT-TTGGTCCCCTTTGCTGTTCCCTAAC---TTTGGAGG--TAATG-GTGGTCG-CAAAAAGCAAATGAATTG-T-TCTCAAGAACCAATTTAAG-TC-CTT----CCA-AAATAAA-ATTCTGTTCAAAAT-T
gi|16 : TG--AGCTGGAT-G-GCA-TGATTTA-AAAT----TC--AAAA--ATTGA-----TGTGTGTCC---GTTGTTGTTTT-AAAATACATCGG---TTAGGATTTTAGTT--CCATGCTTT-ATCAATTTAGT--GTCCA-AAAT--GAAATTGAAG-T-AT---TACTGTATTCCA-tcgggattattt
gi|17 : ATG-GAAGTTTC-G-T-TT---CTTTG-ATTCCA-TGGGTGAA-TTTTAATCGAT-CGTGTAAA-TTGTTC-AACAGAGTATGAAATGTGTGTAGCTTTT---CCTTTCCTTGAGTCCAAAAAAT--GAAACAAGTACAGACA------TATTTT
gi|18 : GATTTCACAAGAATGA-CACAG-TTCC-GTACAATAAAAAA-CTGTAAGCGCTT
gi|19 : atatatatatttccaaagaataattgggtttggtcagaaataaataactttatattTCCTT-TGC--CACA-TCGG--CAAAA--TTGAC-ACAA-GGGAATTGGCGGTCGC-TG
gi|2 : attctccgttccacataacataaatgcggGAATTCACAAGAATGA-CACAGGT-CA-GT-CAATAAAAAA-CTGTAAGCGCTTC--CCCG-C--CATGTT--GGCT-CTTCAGAC---AAGTAT--TTGTTTTTGAATAGTTAA-C-GTTGCTTG--AA----ATACAACCGTA-ATTGTTTA-TGACTGTTA---TTGTTTA--AACGTCAT-GACGTCACA--CCTCCGTG--T-GAGT-ATGAACGT-CA-CAAT-ATTACTCTCT-GGTAAGCATTGAAAACA-AGGACCTGACAATAACAGT--TTAAA-TAAGATAAATCATCTCACTTATAATTCAAGTTTTAGGGTTAAACAGTTT-ATAA-AGA-GTCCTCCTTTGATAA-ACGTGCT-AAT-TCTGCCT-CT--CGT--CACATTTTGATCAAAAGGGGAAAA-TTTTGAATTTCCCTT-TGCGCCACATTCGGGGCAAGAGAATGACTGCAGCGGGTATT-GCGGACGCCTGGGAT-TCGAATCCTGTTG-TTTAAGCACTCGAAATCTTGCG-ATGAACGTCTTCC-G-TTTGTACCACA-ATTCGTAAGAACTCTT-GCATGTG---GG--CATATAACACAATATATCTAAATTTTTCAACTTTTTGGC-ATTCATATTGGCG-TTTGTGG-TGA-TTTTCCTTCGGTTTTTTAAATAATGACG-TTTTCCC-TTCTTCA-TATACTCCACACGTTTTCCACATTGCGGATCTCCACATTTGGAAATATGTTTTGTTTCTTTTTGTGAAATAAATTTGGCTGT-GGTAAGTATTC-TTTTAAGGTTGGGCGCTT-CCTTCTGCTATCTATGGATATACAGAGGTGTTGAACAAGGTTTTCCAGATTTTCAGATTGTTCGC-AAGATTGGGAAAAA-AAACGTTTTG--CGGT--CTATGATGTTA-GATTTC-TGGGTTTGGTGG-TAACGAACCAGC-GAATTTTTGCTGTCTTACAGTCCATTAAGGTTTTTTGT--TGGGTTTTGCGCCCGTATATCTGATTCTAGGAATGTCCA-TGC-TTTTTT-GA-C--TATATATTTCTTAAATAAAGGTATGTTCCGGTAATGTTGCGTCCTACTATCCACACCGTAACGATTCGTCCCATACGTTTAGACTCAGGT-GT-CAAATATT--T-----------ACTAC-G-AG-ATGAATCAGTCT-GGATA-GATGAATGG-TAGTCGTG-ACGCTTGGT-AAAGCTGCGAGAT-GTGTATATATATATATATATTACC--AAATTAACTGAGATGGTG-GTATCCGCAGTC-CTCTTGC-AAAATATGTCTGTACTTA----TTTCGTTCGCCATTTTTT-AGAG--TTATA-CATCTGAAAATGCGAAGTTC--G-T-TTTTCCATTATATTCCATTGG-TGAA-TTA-AATCGATTCGTGTAAA-TTGTTCAAACAGAGTATG-AATG-GT-TA-CTTTTTGATCTTTCC-TGAGTCCAAAAAAAATGAAACAATCATCGAGA------TATC-TTTCCAG-T-TAACTGAAAT--------ATA-TGAACAGAATTTTCAATCAAA---TTTTGGTAGCTGGC--TATCATTTTCTCCTCCAAAAAT-CCATTACAAGG---GCGTAT--GTGGGGGCTACT-TTAGT-TCCATTGCTGTTCCCTTTA----CTGGAAA--TAGTA-TTCATTGTCAAAATGAAAATGG-TTGTT-TCTCAAGTACAAA-GTTAA-TCACTTC-------AAATA------------------TGAACTCTTTTGAAAAAACGCTCACTTACTGGCATTCGAT-AATTTCTCCAACCAGAAAATTCTATGGCCTC-AAG--TCCTAAGTTGTGT-GGAAATATAT-GT--ATATAG-CTTACCACATCCACAAACTGA-TAGAAT-TGTCTCG---TTAACTGTTTTGGGCAATATGCATTAAGAAAATCCATATCATCCCCTTTGTAAAAGCTGTTTAACAAATTAACACAGTGGCTTC-GTAAAATGT-TAGAAAATTACTAAGTCTTTGTGTACT
gi|20 : tttataatGTAAAACTTGT---ATAAATTCACAAAGTG-CTTCAGTGAAATGTCTAGAAAATTACT--GTCTTTGTGTACT
gi|21 : GAAACCACAAGAATGA-CACAG-T-CC-ATACAATAA
gi|24 : ttaacacacgagtaaatgtataatttaaaatATACATG-AAGTTCT---A---TT--G----TCATATTGGCG-TTTGGTG-TGATTTTCCTTCC
gi|25 : gTCTTGGGTT--GTGGGTAACG-ACCAGCGGAATGTTT-CTGT-TTA-AGT-CA
gi|26 : ACATTCGG--CAAAATGTTGACAGC-ACGGG
gi|3 : AGAATTCACAAGAAT-A-CACAG-T-CCCGT-CAATAAAAAC-TTGTAAGCGCTTT--C--G-CGCCATGTT--GGCTACTTCAGAC---AG---T--TTGTTTT-AGATAGTTAAGC-GTTG--TGTCAA----ATACAACGTTA-ATTGTTTACTGAC-GTT-----TGTTTATCGACGTCAT-GACGTCATAATC-TCCATG--TTGAGT--T-GACGT-CAACAATTATTACT-TCTTGGTA-GCATTGAAAA-C-AGG-C-TGACAATA-CAGTAATTAAAATCAGATAA-TCAT-TCACTTATAATT-AAGTTT-AGGGTTAAACAGTTT-ATAATAAGAGTCCT---TTGATAACACGTGCT-A-T-TC---AT-CCTCCGTTCCACATTT-G--TAAA-GGGGAAAA-TTTTGAATTTTCCTT-TGC--CACATTCGG--CAAAATGTTGACTGCAACGGGTATT-GCGGACGC-TGGCATCTCGAATC-TGTTGTTTTATGCACTCGAACTCTTGCGAATGA--GTCTTCCCG-TTTGT--C-CATAT--GTA--AACTCTTT-CATGTA---GGG-TATATAGCACGATATATC-AAATTTT---TCTTTT--GCAATTCATATTGGCG-TTTGGTG-TGA-TTTCCTTCCGGTTTTT---ATA-TGATGTTTTTCCCCTTCTTCAATATACTC-ACACGTT--CCAgt
gi|4 : tata-AGGAT-TAACAATA-CAGTAATTGAA-TCCGACAAATCATACCACTTATA--------------GTTAAATAGTTTTATAA-AGAAATAATTTTTTGATAA-AAACAAT-A-TGTC---ATCCT--CGTTCCACACTTTG--TAAAA
gi|4 : TCCTCGTTC--CACACTTTG--TAAAATGT-------AATG----TT-GCAGACGC-TGGAATCTGGAATC-TTTTG-TTTGTATACTCGAACCCGTGTG-ATGA--GTCTTCCCG-CTTGT--T-CA-AT--GTC-GAATTATTTGCATATGCATGGGTCATATAGCACAATATAGC-AGATTTTG--ACCTTT--GC-ATTCATGTTGGCG-TTTGATATTGT-TTTCCATCCAGTTTTT--AATA-CGATG-TTTTCCCCTTCTTCAATATAATC-CTATGTT--CTACATCACGGGTTTCCTCATTTAGAAATGT----------TTTTTATG-------------TGT-G----ATATTC-TTTTAACGTTTGGTGCTTGCCTTCTGCTATTTATGtgtaatgttgcagacgctggaatctggaatcttttgtttgtatactcgaacccgtgtgatgagtcttcccgcttgttcaatgtcgaattatttgcatatgcatgggtcatatagcacaatatagcagattttgacctttgcattcatgttggcgtttgatattgttttccatccagtttttaatacgatgttttccccttcttcaatataatcctatgttctacatcacgggtttcctcatttagaaatgttttttatgtgtgatattcttttaacgtttggtgcttgccttctgctatttatg
gi|5 : aggattaacaatacagtaattgaatccgacaaatcataccacttatagttaaatagttttataaagaaataattttttgataaaaacaatatgtcaGTTTCCCC--TAATTTTGA-TCTAAGGATGT--ACTGC-TTTTTT-AA-A--CCTGCATTT-----A---AGGT-TGTCTGG-TA-----------TA--ATGTACATCG----AATT-------T-CGTTCAT--TC--GTAGT-CA-GCACA--A-----A-----ACAAT---AGCAT--A---ATCT-CAGTAAATTGAA--G-CAAT-GTT-A-ATTTAGTGATG--TGCCGGAT-G--CA-AGATTTA-AAAT----CC--CAAT--AC-GA------GTGTATGC---GTC-C-------------------------------TCGT-CGCCCTCTTTTCATGA--T-AGTTCATCTAGCAATA--AAGTT---G-TCTT---CATTGC-TTTCA-TTG-TAAAATGT-AATCGAT-CGTGTAAAATTGTTCTAGTAGATT-TG-AATTTCAGTAGCCTTT---C---TTCTTGA-TCAAAAAAAATGAAAACAATCATCGAAATCAGATTATCTTTT-CAG-T-TTCT--GAAT--------CTACTGAACA-AATCTT-----AAA---TT---GTA-CTGGT--TA-CATTT
gi|6 : tttgtGAAATCACAATAATGA-CACAG-T-CT-GTGCAATAAAAAAGCTGTAAGCGCTTT--C--G-C--CATGTT--GGCT-CTTCAGAC---AG---G--TTGTATT-GAATACTTTA-C-GTTGC-TG--AA----ATACAACGCTA-TTTGTTTA-TGAC-ATTA---TTGTTTAT-GACGTCAT-GACATAACAATCCTTCGTG--TAGATT-AT-AACGT-CA-CAATTATTACT-TTT-GGTA-GCATTG-GAAAC-AGGAC-TGACAATA-CAGCAATTA
gi|7 : agttatcgtacttacggcagatgatcgttaatttgcaggaaattccttccaagatcctttccattccatttgattctgctaccgatttagatctggtctgtgacatcctagtcttgcaccaaagttcaatatatattttccaaagaatatggtttggtacataaataaatattttaaaatAGAAAACACAATAATGAACACAG-T-CT-GTGCAATAAAAAG-CTGTAAGCGCTTTTCC--GCC--CATGTTGGGGCTCCTTCAGACAGGAG---TGGTTGTATT-GAATACTTTA-CGGTGG--TG--AAAGACATACAACCATATATTG--TAGGGACAATTATTTTTGTTGATGGACGTC-T-GACATAACAATCCT-CGTGTTTTAGGTCATCAACGTCCA-CAA
gi|8 : tggacatgtctatgcgtactacggcaatgatcgtaatttgcggggaggattccttccaagatccggtttccattccatttgctctgcattaccgatttgtagtctggcctgacacctagtcttgcaccaaagtcctcattatattttcccaaagaatcatggttgggtacataaatagaaatatctttaaGATTTTGAGACTGTT--TTAATATAGGT--AAATAAATCTTCTGAGCGGTTCCAAAAATATTGTGGTTGCTTGGATT--ATG---------CAAACGGAATATCG-TTGT-TTATACG-CATT-TTCTTCTTCATGACGGGAGTTTCG----TAAGGTAGA-TATTGGTATGCTCCGTGC-TTTTGTAGA-A--GCGTCATTG-----AT-GAGGT-TTTCTGGATAATGTTGTCGTTTA--AGGTATTCTTT--CAATTCCTCCAAT-CTTTTAGA-CC--GTAAT-GAAGTATT--CTTTATA-----ACTGC----ACAT--ATCTGTCC-GGCCATGTTGTAT-G-AAAT-GTT-ACGTTTGGC-ATG-----AGGAA-G-GCAGAGA--AA-AAAT----TCTTAAAT--GCCG
gi|9 : ACT-TTG-TCCCCATTGCTGTTCC--TTA---TTTGG-----TAATGATTGGTCG--GAAAAGCAAATGAATTG-TATCTC-AGAACCAATTATAAGTC-CTTC---CCATAAATAAATCTTCTTTTGA-------AACTTTGTC------ATATCCAGGTATT----TCCGGATTATT--TCCATCCAAAAG--TTTACGGCTTCTAAGATTCCCAA-TCCTGTAGG-AATGTTCGGTCAATATAAA-TAATAACATCCA-AAAGTGAC--AAGTCTGGTTCG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGTACTTACTGCAAAGAATCGAAATTTTGCCTGAAATTTCTTCCAATATCCTTTCCATTCCGTTAAAATCTGCTACCGATTTTGCACGAGTTTGTGACATCTTGGTCGTGTATCAAATTTAAAATAATTTAGTAAAAGGAATCCAGTATTTGATACAGTAAATATTTCCAATAATAAAATTCAAAAAACACAA
Unaligned ( gi|22 ): TTCGTAAGAGGAATTCTATTTGATACAGTAAATATATGCATTGCTAAAGTCAAGAAATACAAA
Unaligned ( gi|23 ): TTCCATGCTTTATCACTTTAATGTCCAAAAAATTAAATTGAAGTATTACTGTATTCCA