lowQualScore : 333333333 1 111111111 333333333333333333333333333
lowQualScore : 6 11 2 2 2 2 44 2 111111111 888888 2 2 55 0 2 44 2 55 2 555 2 555 4 0 6666 2 2 777 555 7 555 333333333 44 6666 3 666666666666666666666666666 1 44 44 44
lowQualScore : . .. . . . . .. . ......... ...... . . .. . . .. . .. . ... . ... . . .... . . ... ... . ... ......... .. .... . ........................... . .. .. ..
lowQualScore : 8 55 7 7 7 3 77 7 333333333 222222 9 9 22 4 9 33 9 77 9 000 9 000 9 2 1111 9 9 999 000 6 555 666666666 22 5555 1 888888888888888888888888888 7 66 66 66
consensus : CANGTTTCTCGGTTA-TCTAACG-TCA-CTGAG-GAATC-AAAGC------TTTA------C-A-CC-CTGAAGAGT-AAA-CGATTT-TCAATGAAAA-NAT-GT---A-AA---AGGTCTT----AA-T-A---T---CAATTA--AC-ATTAATTAAG--TA----G-GG-A--AA---------------------TTAAAGTTTT--TC--AT--CATAAAGAA
Reference ( gi|8 ) : CAAGTTTCTCGGTTA-TCTAACA-TCA-CTAAG-AAATC-AAAGC------GTTA------C-A-CC-CTAAAGAGT-AAG-CGATTT-TCAATGAAAA-GAT-GT---A-AA---AGCTTTT----AA-T-A---T---CTATTA--AC-ATTGATTAAG--TA----G-GG-A--AA---------------------TTAAAGTTTT--TC--AT--CATAAAGAA
gi|9 : CAGGTTTCTCAGTTA-TCTAACC-TTA-CTAAG-GAATC-AAAGC------TTTA------C-A-CC-CTAAAGAG---AA-CGATTT-TCAATGAAAA-AAT-TT---A-AA---TGGTCTT----AA-T-A---T---CTATTA--AC-ATCAATTAAG--TA----G-GGAA--AA---------------------TTTAAGTTTT--TC--AT--CATAAAGAA
gi|14 : CAAGTTTCTCGGTTA-TCTAACA-TCA-CT-AG-AAATC-AAAGC------TTTA------C-AGTC-CTAAAGAGT-AAG-CAATTC-TC-ATGAAAA-GAT-GT---A-AA-----------------------------GTTA--AC-ATTAATT-AG--TA----G-GGAA--AA---------------------TTAAAGTTTT--TC--AT--CATAAAGAA
gi|1 : CACGTTTCTGAGTT--TCTAACGGTCA-ATGAG-GAATC-AAAAC-------TTA------C-A-CT-GGTGAGAGT-AAA-CGA-TT-TCAATGAAAATAATAGT---A-AAAAGAG-TCTT----AA-T-A---T---CAAGTA--ACAATTCAGTTAG--TGCGGCG-GG-A--GAGGGGGTTTACAGGGGATAGCTTTACAGTTTT--TC--AT--TATGAAGAAg
gi|18 : gCACGTTTCTGAATTA-TCTAACA-TCA-ATGAG-GAATC-AAAAC------g
gi|7 : ttgGTTTATCAGTTA-TCTAACA-TCA-CTAAG-GAATC-AAAAC------TTTA------C-A-CC-ATGGAGAGT-AAA-CGATCT-TCAATGAAAA-GAT-GT---A-CA---AGGTCTT----AA-T-A---T---CAATTA--AG-ATTAATTTAG--TA----G-GGAA--AA---------------------TTTAAGTTTT--AC--AT--TATAAAGAAtt
gi|6 : tacGTTTATCA-TTA-TTTAACA-TCA-CTAAG-GAATCAAAAAC------TTTA------C-A-CC-ATGGAGAGTAAAA-CGATCT-TCAATG-AAA-GAT-GT---A-CA---AGGTCTT----AA-TAA---T---CAATTAAGAG-ATTAATTTAG--TA----G-GA-A--AA---------------------TTTAAGTTTTACTT--ATACTATAAAGAAg
gi|3 : GTTTCTCGGTTA-TCTAATG-TCA-CTGAG-GAATC-AAA-CTTTAAATTTA------C-A-CT-TTGAAGAGC-AAA-CAATTT-TCAAT-AAAA-TAT-CC---T-AA---AGGTTTT----GA-T-A---T---CAATTG--AC-ATTAA--AGGCATA----G-GG-g
gi|5 : cgagtgttgaccaaaaattccatggacaaatggcGTTTCTCGGTT---CTAATG-T-A-CTGAG-GAATC-AAA-C------TTTAAATTTAC-A-CT-TTGAAGAGC-AAA-CAATTT-TCAATAAATA-ATC-CT---A-AA---GGTTTTG----AA-T-A---T---CAATTG--AC-ATTAAtctatcgtttat
gi|2 : gagtgttgaccacaaatttcatggacaaatgcGTTTCCCAGCTA-CCTAACG-CCA-TTGAG-GAATC-AAACT------TTTA------C-A-CC-ATGAAGAAC-AAA-TAATAG-ACGATAAAAA-TAT-GTAGAA-AG---AGTTTTT----GA-T-A---GGAACTTTT-------TTTTTT------------------------------------------TTAGA-TTTT--TC--AT--CGTAAAGAAaggacatagggtctatcgt
gi|4 : aggcttgtcccaaaattctgtggacaagcagcTTTTTTACTTA-TCTAATG-TCA-CCGAG-GAATC-AAACT------TTTA------C-A-TC-TTAAAGAAT-GAA-CAACTT-TGAATGAAAA-TGT-GG---A-AA---GATTTTTTTTAAA-T-A---T---CAATTG--AC-A-----CAAG---A----G-G---------------------------------GTTTT--TC--AT--TATga
gi|12 : tgaatgttgtccaaaacttctgtggacaagcggtaTTCTCAGTTA-TCTAACA-TCA-CTGAG-GAATC-AAACT------TTTA------C-A-CC-ATGAAGAGC-AAA-CAATTT-TCAATGAAAA-AAT-GT---ATAA---AGA-TTT----AA-T-A---T---CAATTG--GC-A---ATTAA---TA----GAAA-A--AA---------------------TTTAGGTTTT--TC--AT--CATAAAG
gi|13 : TTCTCG-TTA-TCTTACA-TCAACTAAGCAAATC-AAAGC------TTTA------CTA-CC-CTAAAGAGT-AAGGCGATTCCTCAATGAAAG-ATT-GT---A-AA---AGGTCTT----AA-T-AA--T---CTA-----------------G--TA----G-GG-G--A----------------------TTAAAGTTTT--TTTTAT--CATAAAGGA
gi|15 : TCTCAACCA-TCTAATG-TCA-CTGAG-GAATC-AAA-------------------------CTA----GT-AAA-CAATTT-TCAATGAATA-TAT-GT---A-AA---ATGTTTT----AA-T-A---T---CAGTTG--AC-----ATTAAA--TA----G-GA-AAGAA---------------------TTAGGG-TTT--TC--AT--AATCAAGAg
gi|10 : CTCGGTTA-T-TAACA-TCA-CTAAG-AA-TC-AAAGC------TTCA------T-A-CC-CTAAAGAAT-AAG-CGATTC-TCAATGAAAA-GAT-GT---A-AA---AGGTCTT----AA-T-A---T---CTTTTA--AC-ATTAATTAAG--TA----G-GGAA--AA---------------------TTAAAGTTTT--TC--GT--CATAAAGAA
gi|11 : TTACTCTAACA-TCA-CTAAG-AAATC-AAAGCT-----TTTA------C-A-CCGCTGA--AGT-AAG-CGATTC-TCAATGAAAA-GAT-GT---A-AA---AGGTCTT----AATT-ATTTT---CTTTTA--AC-ATTAATT-AG--TA----G-GG-A--AA---------------------TTATAGTCTT--T---AT--CATAAAAAg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AGGATTGTCTCAAAATACTGTGGGCAAGTGGCGTGCTTCATTAGACTAAAGTCACACAAAAAATGAAACTTACATAACTTAAAGAACAAGTAATTTG
Unaligned ( gi|17 ): CGTATACGAGCGTTGTCCCAAACTTCCATGGACAAGCGGCCTTTTTCAGATATCTAAGGTCAAAAAATCTAAATGAAGTACAAAGTTAACATTTTG
Unaligned ( gi|19 ): GGGTTGTCCCAAAATTCCGTGGACAAGTGGC
Alignments
lowQualScore : 111111111 222222222222222222222 11
lowQualScore : 1 0 2 33 2 0 2 444444444 777777 2 2 44 33 5 2 1 2 2 2 888 1 99999 2 2 444 1 444 33 444444444444444444444 555 2 22 555 0 44 44 44
lowQualScore : . . . .. . . . ......... ...... . . .. .. . . . . . . ... . ..... . . ... . ... .. ..................... ... . .. ... . .. .. ..
lowQualScore : 0 5 5 11 5 1 5 888888888 777777 7 7 22 77 3 7 0 7 7 7 333 4 33333 7 7 777 1 555 77 111111111111111111111 000 9 66 444 8 22 22 22
consensus : CANGTTTCTCGGTTA-TCTAACG-TCA-CTGAG-GAATCAAAG-C------TTTA------C-A-CC-CTGA--AGAGTAAA-CGATTT-TCAATGAAAANA-T-GTA-AAAGG---TCTT-----AA-T-A---TCAATTA--ACA--TTAATTA----------AG--------TA---G-GG-AAA---TTAAAGTTTT--TC--AT--CATAAAGAA
Reference ( family-4477 ) : CANGTTTCTCGGTTA-TCTAACG-TCA-CTGAG-GAATCAAAG-C------TTTA------C-A-CC-CTGA--AGAGTAAA-CGATTT-TCAATGAAAANA-T-GTA-AAAGG---TCTT-----AA-T-A---TCAATTA--ACA--TTAATTA----------AG--------TA---G-GG-AAA---TTAAAGTTTT--TC--AT--CATAAAGAA
gi|1 : CACGTTTCTGAGTT--TCTAACGGTCA-ATGAG-GAATCAAAA-C------TT-A------C-A-C---TGGTGAGAGTAAA-CGATTT--CAATGAAAATAATAGTA-AAAAGAG-TCTT-----AA-T-A---TCAAGTA--ACAATTCAGTTAGTGCGGCGGGAGAGGGGGTTTACAGG-GG-ATAGCTTTACAGTTTT--TC--AT--TATGAAGAA
gi|10 : gCTCGGTTA-T-TAACA-TCA-CTAAG--AATCAAAG-C------TTCA------T-A-CC-CTAA--AGAATAAG-CGATTC-TCAATGAAAAGA-T-GTA-AAAGG---TCTT-----AA-T-A---TCTTTTA--ACA--TTAATTA----------AG--------TA---G-GGAAAA---TTAAAGTTTT--TC--GT--CATAAAGAAg
gi|11 : TTACTCTAACA-TCA-CTAAG-AAATCAAAG-CT-----TTTA------C-A-CCGCTGA----AGTAAG-CGATTC-TCAATGAAAAGA-T-GTA-AAAGG---TCTT-----AATT-ATTTTCTTTTA--ACA--TTAATT-----------AG--------TA---G-GG-AAA---TTATAGTCTT--T---AT--CATAAAAAg
gi|12 : tTTCTCAGTTA-TCTAACA-TCA-CTGAG-GAATCAAAC-T------TTTA------C-A-CC-ATGA--AGAGCAAA-CAATTT-TCAATGAAAAAA-T-GTATAAAGA---T-TT-----AA-T-A---TCAATTG--GC-----AATTA----------A---------TA---GAAA-AAA---TTTAGGTTTT--TC--AT--CATAAAG
gi|13 : TTCTCG-TTA-TCTTACA-TCAACTAAGCAAATCAAAG-C------TTTA------CTA-CC-CTAA--AGAGTAAGGCGATTCCTCAATGAAAGAT-T-GTA-AAAGG---TCTT-----AA-T-A--------------------ATCT----------AG--------TA---G-GG-GA----TTAAAGTTTT--TTTTAT--CATAAAGGA
gi|14 : CAAGTTTCTCGGTTA-TCTAACA-TCA-CT-AG-AAATCAAAG-C------TTTA------C-AGTC-CTAA--AGAGTAAG-CAATTC-TCA-TGAAAAGA-T-GTA-AAG---------------------------TTA--ACA--TTAATT-----------AG--------TA---G-GGAAAA---TTAAAGTTTT--TC--AT--CATAAAGAAg
gi|15 : TCTCAACCA-TCTAATG-TCA-CTGAG-GAATCAAA--------------------------CT------AGTAAA-CAATTT-TCAATGAATATA-T-GTA-AAATG---TTTT-----AA-T-A---TCAGTTG--ACA--TTAAATA----------GG--------AA---A-G---AA---TTAGGG-TTT--TC--AT--AATCAAGAg
gi|18 : CACGTTTCTGAATTA-TCTAACA-TCA-ATGAG-GAATCAAAA-C------TT
gi|2 : ttgGTTTCCCAGCTA-CCTAACG-CCA-TTGAG-GAATCAAAC-T------TTTA------C-A-CC-ATGA--AGAACAAA-TAATAG-ACGATAAAAATA-T-GTA-GAAAGAGTTTTT-----GA-T-A---GGAACT----TT--TTTTTT---------------------T---------------TTAGA-TTTT--TC--AT--CGTAAAGAA
gi|3 : aggcttgtcccaaaattctgtggacaagcagcGTTTCTCGGTTA-TCTAATG-TCA-CTGAG-GAATCAAA--CTTTAAATTTA------C-A-CT-TTGA--AGAGCAAA-CAATTT-TCAAT-AAAATA-T-CCT-AAAGG---TTTT-----GA-T-A---TCAATTG--ACA--TTAA--A----------GGCA------TA---G-GG-ga
gi|4 : cgagtgttgaccaaaaattccatggacaaatggcTTTTTTACTTA-TCTAATG-TCA-CCGAG-GAATCAAAC-T------TTTA------C-A-TC-TTAA--AGAATGAA-CAACTT-TGAATGAAAATG-T-G-G-AAAGA---TTTTTTTTAAA-T-A---TCAATTG--ACA-------CA----------AG---------A---G-G-------------GTTTT--TC--AT--TATtctatcgtttat
gi|5 : tgaatgttgtccaaaacttctgtggacaagcggtaGTTTCTCGGTT---CTAATG-T-A-CTGAG-GAATCAAA--C------TTTAAATTTAC-A-CT-TTGA--AGAGCAAA-CAATTT-TCAAT-AAATAA-T-CCT-AAAGG---TTTTG----AA-T-A---TCAATTG--ACA--TTAA
gi|6 : gagtgttgaccacaaatttcatggacaaatgcGTTTATCA-TTA-TTTAACA-TCA-CTAAG-GAATCAAAAAC------TTTA------C-A-CC-ATGG--AGAGTAAAACGATCT-TCAATGAAA-GA-T-GTA-CAAGG---TCTT-----AA-TAA---TCAATTAAGAGA--TTAATTT----------AG--------TA---G-GA-AAA---TTTAAGTTTTACTT--ATACTATAAAGAAaggacatagggtctatcgt
gi|7 : ACGTTTATCAGTTA-TCTAACA-TCA-CTAAG-GAATCAAAA-C------TTTA------C-A-CC-ATGG--AGAGTAAA-CGATCT-TCAATGAAAAGA-T-GTA-CAAGG---TCTT-----AA-T-A---TCAATTA--AGA--TTAATTT----------AG--------TA---G-GGAAAA---TTTAAGTTTT--AC--AT--TATAAAGAAg
gi|8 : tCAAGTTTCTCGGTTA-TCTAACA-TCA-CTAAG-AAATCAAAG-C------GTTA------C-A-CC-CTAA--AGAGTAAG-CGATTT-TCAATGAAAAGA-T-GTA-AAAGC---TTTT-----AA-T-A---TCTATTA--ACA--TTGATTA----------AG--------TA---G-GG-AAA---TTAAAGTTTT--TC--AT--CATAAAGAAg
gi|9 : CAGGTTTCTCAGTTA-TCTAACC-TTA-CTAAG-GAATCAAAG-C------TTTA------C-A-CC-CTAA--AGAG--AA-CGATTT-TCAATGAAAAAA-T-TTA-AATGG---TCTT-----AA-T-A---TCTATTA--ACA--TCAATTA----------AG--------TA---G-GGAAAA---TTTAAGTTTT--TC--AT--CATAAAGAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGGATTGTCTCAAAATACTGTGGGCAAGTGGCGTGCTTCATTAGACTAAAGTCACACAAAAAATGAAACTTACATAACTTAAAGAACAAGTAATTTG
Unaligned ( gi|17 ): CGTATACGAGCGTTGTCCCAAACTTCCATGGACAAGCGGCCTTTTTCAGATATCTAAGGTCAAAAAATCTAAATGAAGTACAAAGTTAACATTTTG
Unaligned ( gi|19 ): GGGTTGTCCCAAAATTCCGTGGACAAGTGGC
Alignments
lowQualScore : 111111111 222222222222222222222 11
lowQualScore : 1 0 2 33 2 0 2 444444444 777777 2 2 44 33 5 2 1 2 2 2 888 1 99999 2 2 444 1 444 33 444444444444444444444 555 2 22 555 0 44 44 44
lowQualScore : . . . .. . . . ......... ...... . . .. .. . . . . . . ... . ..... . . ... . ... .. ..................... ... . .. ... . .. .. ..
lowQualScore : 0 5 5 11 5 1 5 888888888 777777 7 7 22 77 3 7 0 7 7 7 333 4 33333 7 7 777 1 555 77 111111111111111111111 000 9 66 444 8 22 22 22
consensus : CANGTTTCTCGGTTA-TCTAACG-TCA-CTGAG-GAATCAAAG-C------TTTA------C-A-CC-CTGA--AGAGTAAA-CGATTT-TCAATGAAAANA-T-GTA-AAAGG---TCTT-----AA-T-A---TCAATTA--ACA--TTAATTA----------AG--------TA---G-GG-AAA---TTAAAGTTTT--TC--AT--CATAAAGAA
Reference ( family-4477 ) : CANGTTTCTCGGTTA-TCTAACG-TCA-CTGAG-GAATCAAAG-C------TTTA------C-A-CC-CTGA--AGAGTAAA-CGATTT-TCAATGAAAANA-T-GTA-AAAGG---TCTT-----AA-T-A---TCAATTA--ACA--TTAATTA----------AG--------TA---G-GG-AAA---TTAAAGTTTT--TC--AT--CATAAAGAA
gi|1 : CACGTTTCTGAGTT--TCTAACGGTCA-ATGAG-GAATCAAAA-C------TT-A------C-A-C---TGGTGAGAGTAAA-CGATTT--CAATGAAAATAATAGTA-AAAAGAG-TCTT-----AA-T-A---TCAAGTA--ACAATTCAGTTAGTGCGGCGGGAGAGGGGGTTTACAGG-GG-ATAGCTTTACAGTTTT--TC--AT--TATGAAGAA
gi|10 : gCTCGGTTA-T-TAACA-TCA-CTAAG--AATCAAAG-C------TTCA------T-A-CC-CTAA--AGAATAAG-CGATTC-TCAATGAAAAGA-T-GTA-AAAGG---TCTT-----AA-T-A---TCTTTTA--ACA--TTAATTA----------AG--------TA---G-GGAAAA---TTAAAGTTTT--TC--GT--CATAAAGAAg
gi|11 : TTACTCTAACA-TCA-CTAAG-AAATCAAAG-CT-----TTTA------C-A-CCGCTGA----AGTAAG-CGATTC-TCAATGAAAAGA-T-GTA-AAAGG---TCTT-----AATT-ATTTTCTTTTA--ACA--TTAATT-----------AG--------TA---G-GG-AAA---TTATAGTCTT--T---AT--CATAAAAAg
gi|12 : tTTCTCAGTTA-TCTAACA-TCA-CTGAG-GAATCAAAC-T------TTTA------C-A-CC-ATGA--AGAGCAAA-CAATTT-TCAATGAAAAAA-T-GTATAAAGA---T-TT-----AA-T-A---TCAATTG--GC-----AATTA----------A---------TA---GAAA-AAA---TTTAGGTTTT--TC--AT--CATAAAG
gi|13 : TTCTCG-TTA-TCTTACA-TCAACTAAGCAAATCAAAG-C------TTTA------CTA-CC-CTAA--AGAGTAAGGCGATTCCTCAATGAAAGAT-T-GTA-AAAGG---TCTT-----AA-T-A--------------------ATCT----------AG--------TA---G-GG-GA----TTAAAGTTTT--TTTTAT--CATAAAGGA
gi|14 : CAAGTTTCTCGGTTA-TCTAACA-TCA-CT-AG-AAATCAAAG-C------TTTA------C-AGTC-CTAA--AGAGTAAG-CAATTC-TCA-TGAAAAGA-T-GTA-AAG---------------------------TTA--ACA--TTAATT-----------AG--------TA---G-GGAAAA---TTAAAGTTTT--TC--AT--CATAAAGAAg
gi|15 : TCTCAACCA-TCTAATG-TCA-CTGAG-GAATCAAA--------------------------CT------AGTAAA-CAATTT-TCAATGAATATA-T-GTA-AAATG---TTTT-----AA-T-A---TCAGTTG--ACA--TTAAATA----------GG--------AA---A-G---AA---TTAGGG-TTT--TC--AT--AATCAAGAg
gi|18 : CACGTTTCTGAATTA-TCTAACA-TCA-ATGAG-GAATCAAAA-C------TT
gi|2 : ttgGTTTCCCAGCTA-CCTAACG-CCA-TTGAG-GAATCAAAC-T------TTTA------C-A-CC-ATGA--AGAACAAA-TAATAG-ACGATAAAAATA-T-GTA-GAAAGAGTTTTT-----GA-T-A---GGAACT----TT--TTTTTT---------------------T---------------TTAGA-TTTT--TC--AT--CGTAAAGAA
gi|3 : aggcttgtcccaaaattctgtggacaagcagcGTTTCTCGGTTA-TCTAATG-TCA-CTGAG-GAATCAAA--CTTTAAATTTA------C-A-CT-TTGA--AGAGCAAA-CAATTT-TCAAT-AAAATA-T-CCT-AAAGG---TTTT-----GA-T-A---TCAATTG--ACA--TTAA--A----------GGCA------TA---G-GG-ga
gi|4 : cgagtgttgaccaaaaattccatggacaaatggcTTTTTTACTTA-TCTAATG-TCA-CCGAG-GAATCAAAC-T------TTTA------C-A-TC-TTAA--AGAATGAA-CAACTT-TGAATGAAAATG-T-G-G-AAAGA---TTTTTTTTAAA-T-A---TCAATTG--ACA-------CA----------AG---------A---G-G-------------GTTTT--TC--AT--TATtctatcgtttat
gi|5 : tgaatgttgtccaaaacttctgtggacaagcggtaGTTTCTCGGTT---CTAATG-T-A-CTGAG-GAATCAAA--C------TTTAAATTTAC-A-CT-TTGA--AGAGCAAA-CAATTT-TCAAT-AAATAA-T-CCT-AAAGG---TTTTG----AA-T-A---TCAATTG--ACA--TTAA
gi|6 : gagtgttgaccacaaatttcatggacaaatgcGTTTATCA-TTA-TTTAACA-TCA-CTAAG-GAATCAAAAAC------TTTA------C-A-CC-ATGG--AGAGTAAAACGATCT-TCAATGAAA-GA-T-GTA-CAAGG---TCTT-----AA-TAA---TCAATTAAGAGA--TTAATTT----------AG--------TA---G-GA-AAA---TTTAAGTTTTACTT--ATACTATAAAGAAaggacatagggtctatcgt
gi|7 : ACGTTTATCAGTTA-TCTAACA-TCA-CTAAG-GAATCAAAA-C------TTTA------C-A-CC-ATGG--AGAGTAAA-CGATCT-TCAATGAAAAGA-T-GTA-CAAGG---TCTT-----AA-T-A---TCAATTA--AGA--TTAATTT----------AG--------TA---G-GGAAAA---TTTAAGTTTT--AC--AT--TATAAAGAAg
gi|8 : tCAAGTTTCTCGGTTA-TCTAACA-TCA-CTAAG-AAATCAAAG-C------GTTA------C-A-CC-CTAA--AGAGTAAG-CGATTT-TCAATGAAAAGA-T-GTA-AAAGC---TTTT-----AA-T-A---TCTATTA--ACA--TTGATTA----------AG--------TA---G-GG-AAA---TTAAAGTTTT--TC--AT--CATAAAGAAg
gi|9 : CAGGTTTCTCAGTTA-TCTAACC-TTA-CTAAG-GAATCAAAG-C------TTTA------C-A-CC-CTAA--AGAG--AA-CGATTT-TCAATGAAAAAA-T-TTA-AATGG---TCTT-----AA-T-A---TCTATTA--ACA--TCAATTA----------AG--------TA---G-GGAAAA---TTTAAGTTTT--TC--AT--CATAAAGAA
blockSeqs : A C A A C CTTTAAA AATTTA T G GC . G C G . . T AGT C TTTTA T A TTT T AAG . AGGCA . A GA . AC TT AC
blockSeqs : C . A . . GCT . . . C . A . G . . . . C G . . . T A . AAG . . GA . . . .
blockSeqs : C . A . . AAC . . . A . . . A . . . . C . . . . A A . TAG . . GA . . . .
blockSeqs : A . A . . GC . . . C . . . A . . . . T . . . . A G . AGG . . GA . . . .
blockSeqs : G . A . . CT . . . C . . . G . . . . T . . . . A A . AAG . . G . . . .
blockSeqs : . G . . GC . . . C . . . T . . . . T . . . . A G . TAG . . A . . . .
blockSeqs : . A . . GC . . . A . . . T . . . . T . . . . A G . TAG . . G . . . .
blockSeqs : . G . . AC . . . T . . . T . . . . T . . . . A G . AAG . . G . . . .
blockSeqs : . G . . CT . . . T . . . T . . . . C . . . . A G . AAG . . A . . . .
blockSeqs : . G . . CT . . . T . . . A . . . . C . . . . A A . AG . . G . . . .
blockSeqs : . G . . AC . . . A . . . G . . . . T . . . . T A . AA . . . . . . .
blockSeqs : . A . . GC . . . A . . . G . . . . C . . . . T A . AG . . . . . . .
blockSeqs : . A . . GC . . . C . . . G . . . . . . . . . . . . . . . .
blockSeqs : . A . . C . . . C . . . A . . . . . . . . . . . .
blockSeqs : . C . . .
blockSeqCons : A* C* ** *** ** AAG****************** *** ***
originalCons : CANGTTTCTCGGTTA-TCTAACG-TCA-CTGAG-GAATCAAAG-C------TTTA------C-A-CC-CTGA--AGAGTAAA-CGATTT-TCAATGAAAANA-T-GTA-AAAGG---TCTT-----AA-T-A---TCAATTA--ACA--TTAATTA----------AG--------TA---G-GG-AAA---TTAAAGTTTT--TC--AT--CATAAAGAA
finalCons : CANGTTTCTCGGTTA-TCTAACA-TCA-CTGAG-GAATCAAAG-C------TTTA------C-A-CCC-TGA--AGAGTAAA-CGATTT-TCAATGAAAANA-T-GTA-AAAGG---TCTT-----AA-T-A---TCAATTA--ACA--TTAATTAAG------------------TA---G-GG-AAA---TTAAAGTTTT--TC--AT--CATAAAGAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGGATTGTCTCAAAATACTGTGGGCAAGTGGCGTGCTTCATTAGACTAAAGTCACACAAAAAATGAAACTTACATAACTTAAAGAACAAGTAATTTG
Unaligned ( gi|17 ): CGTATACGAGCGTTGTCCCAAACTTCCATGGACAAGCGGCCTTTTTCAGATATCTAAGGTCAAAAAATCTAAATGAAGTACAAAGTTAACATTTTG
Unaligned ( gi|19 ): GGGTTGTCCCAAAATTCCGTGGACAAGTGGC
Alignments
lowQualScore : 111111111 222222222222222222222 11
lowQualScore : 1 0 2 2 2 0 2 444444444 777777 2 2 44 33 5 2 1 2 2 2 888 1 99999 2 2 444 1 444 33 444444444444444444444 555 2 22 555 0 44 44 44
lowQualScore : . . . . . . . ......... ...... . . .. .. . . . . . . ... . ..... . . ... . ... .. ..................... ... . .. ... . .. .. ..
lowQualScore : 0 5 5 5 5 1 5 888888888 777777 7 7 22 77 3 7 0 7 7 7 333 4 33333 7 7 777 1 555 77 111111111111111111111 000 9 66 444 8 22 22 22
consensus : CANGTTTCTCGGTTA-TCTAACG-TCA-CTGAG-GAATCAAAG-C------TTTA------C-A-CC-CTGA--AGAGTAAA-CGATTT-TCAATGAAAANA-T-GTA-AAAGG---TCTT-----AA-T-A---TCAATTA--ACA--TTAATTA----------AG--------TA---G-GG-AAA---TTAAAGTTTT--TC--AT--CATAAAGAA
Reference ( family-4477 ) : CANGTTTCTCGGTTA-TCTAACA-TCA-CTGAG-GAATCAAAG-C------TTTA------C-A-CC-CTGA--AGAGTAAA-CGATTT-TCAATGAAAANA-T-GTA-AAAGG---TCTT-----AA-T-A---TCAATTA--ACA--TTAATTA----------AG--------TA---G-GG-AAA---TTAAAGTTTT--TC--AT--CATAAAGAA
gi|1 : CACGTTTCTGAGTT--TCTAACGGTCA-ATGAG-GAATCAAAA-C------TT-A------C-A-C---TGGTGAGAGTAAA-CGATTT--CAATGAAAATAATAGTA-AAAAGAG-TCTT-----AA-T-A---TCAAGTA--ACAATTCAGTTAGTGCGGCGGGAGAGGGGGTTTACAGG-GG-ATAGCTTTACAGTTTT--TC--AT--TATGAAGAA
gi|10 : gCTCGGTTA-T-TAACA-TCA-CTAAG--AATCAAAG-C------TTCA------T-A-CC-CTAA--AGAATAAG-CGATTC-TCAATGAAAAGA-T-GTA-AAAGG---TCTT-----AA-T-A---TCTTTTA--ACA--TTAATTA----------AG--------TA---G-GGAAAA---TTAAAGTTTT--TC--GT--CATAAAGAAg
gi|11 : TTACTCTAACA-TCA-CTAAG-AAATCAAAG-CT-----TTTA------C-A-CCGCTGA----AGTAAG-CGATTC-TCAATGAAAAGA-T-GTA-AAAGG---TCTT-----AATT-ATTTTCTTTTA--ACA--TTAATT-----------AG--------TA---G-GG-AAA---TTATAGTCTT--T---AT--CATAAAAAg
gi|12 : tTTCTCAGTTA-TCTAACA-TCA-CTGAG-GAATCAAAC-T------TTTA------C-A-CC-ATGA--AGAGCAAA-CAATTT-TCAATGAAAAAA-T-GTATAAAGA---T-TT-----AA-T-A---TCAATTG--GC-----AATTA----------A---------TA---GAAA-AAA---TTTAGGTTTT--TC--AT--CATAAAG
gi|13 : TTCTCG-TTA-TCTTACA-TCAACTAAGCAAATCAAAG-C------TTTA------CTA-CC-CTAA--AGAGTAAGGCGATTCCTCAATGAAAGAT-T-GTA-AAAGG---TCTT-----AA-T-A--------------------ATCT----------AG--------TA---G-GG-GA----TTAAAGTTTT--TTTTAT--CATAAAGGA
gi|14 : CAAGTTTCTCGGTTA-TCTAACA-TCA-CT-AG-AAATCAAAG-C------TTTA------C-AGTC-CTAA--AGAGTAAG-CAATTC-TCA-TGAAAAGA-T-GTA-AAG---------------------------TTA--ACA--TTAATT-----------AG--------TA---G-GGAAAA---TTAAAGTTTT--TC--AT--CATAAAGAAg
gi|15 : TCTCAACCA-TCTAATG-TCA-CTGAG-GAATCAAA--------------------------CT------AGTAAA-CAATTT-TCAATGAATATA-T-GTA-AAATG---TTTT-----AA-T-A---TCAGTTG--ACA--TTAAATA----------GG--------AA---A-G---AA---TTAGGG-TTT--TC--AT--AATCAAGAg
gi|18 : CACGTTTCTGAATTA-TCTAACA-TCA-ATGAG-GAATCAAAA-C------TT
gi|2 : ttgGTTTCCCAGCTA-CCTAACG-CCA-TTGAG-GAATCAAAC-T------TTTA------C-A-CC-ATGA--AGAACAAA-TAATAG-ACGATAAAAATA-T-GTA-GAAAGAGTTTTT-----GA-T-A---GGAACT----TT--TTTTTT---------------------T---------------TTAGA-TTTT--TC--AT--CGTAAAGAA
gi|3 : aggcttgtcccaaaattctgtggacaagcagcGTTTCTCGGTTA-TCTAATG-TCA-CTGAG-GAATCAAA--CTTTAAATTTA------C-A-CT-TTGA--AGAGCAAA-CAATTT-TCAAT-AAAATA-T-CCT-AAAGG---TTTT-----GA-T-A---TCAATTG--ACA--TTAA--A----------GGCA------TA---G-GG-ga
gi|4 : cgagtgttgaccaaaaattccatggacaaatggcTTTTTTACTTA-TCTAATG-TCA-CCGAG-GAATCAAAC-T------TTTA------C-A-TC-TTAA--AGAATGAA-CAACTT-TGAATGAAAATG-T-G-G-AAAGA---TTTTTTTTAAA-T-A---TCAATTG--ACA-------CA----------AG---------A---G-G-------------GTTTT--TC--AT--TATtctatcgtttat
gi|5 : tgaatgttgtccaaaacttctgtggacaagcggtaGTTTCTCGGTT---CTAATG-T-A-CTGAG-GAATCAAA--C------TTTAAATTTAC-A-CT-TTGA--AGAGCAAA-CAATTT-TCAAT-AAATAA-T-CCT-AAAGG---TTTTG----AA-T-A---TCAATTG--ACA--TTAA
gi|6 : gagtgttgaccacaaatttcatggacaaatgcGTTTATCA-TTA-TTTAACA-TCA-CTAAG-GAATCAAAAAC------TTTA------C-A-CC-ATGG--AGAGTAAAACGATCT-TCAATGAAA-GA-T-GTA-CAAGG---TCTT-----AA-TAA---TCAATTAAGAGA--TTAATTT----------AG--------TA---G-GA-AAA---TTTAAGTTTTACTT--ATACTATAAAGAAaggacatagggtctatcgt
gi|7 : ACGTTTATCAGTTA-TCTAACA-TCA-CTAAG-GAATCAAAA-C------TTTA------C-A-CC-ATGG--AGAGTAAA-CGATCT-TCAATGAAAAGA-T-GTA-CAAGG---TCTT-----AA-T-A---TCAATTA--AGA--TTAATTT----------AG--------TA---G-GGAAAA---TTTAAGTTTT--AC--AT--TATAAAGAAg
gi|8 : tCAAGTTTCTCGGTTA-TCTAACA-TCA-CTAAG-AAATCAAAG-C------GTTA------C-A-CC-CTAA--AGAGTAAG-CGATTT-TCAATGAAAAGA-T-GTA-AAAGC---TTTT-----AA-T-A---TCTATTA--ACA--TTGATTA----------AG--------TA---G-GG-AAA---TTAAAGTTTT--TC--AT--CATAAAGAAg
gi|9 : CAGGTTTCTCAGTTA-TCTAACC-TTA-CTAAG-GAATCAAAG-C------TTTA------C-A-CC-CTAA--AGAG--AA-CGATTT-TCAATGAAAAAA-T-TTA-AATGG---TCTT-----AA-T-A---TCTATTA--ACA--TCAATTA----------AG--------TA---G-GGAAAA---TTTAAGTTTT--TC--AT--CATAAAGAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGGATTGTCTCAAAATACTGTGGGCAAGTGGCGTGCTTCATTAGACTAAAGTCACACAAAAAATGAAACTTACATAACTTAAAGAACAAGTAATTTG
Unaligned ( gi|17 ): CGTATACGAGCGTTGTCCCAAACTTCCATGGACAAGCGGCCTTTTTCAGATATCTAAGGTCAAAAAATCTAAATGAAGTACAAAGTTAACATTTTG
Unaligned ( gi|19 ): GGGTTGTCCCAAAATTCCGTGGACAAGTGGC