lowQualScore : 11 66666666666666 11111 2222222 1 11
lowQualScore : 1 00 88888888888888 8888 00000 3 6 3333333 44 00 2 33 1 22 1
lowQualScore : . .. .............. .... ..... . . ....... .. .. . .. . .. .
lowQualScore : 1 66 22222222222222 5555 00000 6 5 2222222 22 77 9 99 4 33 0
consensus : TCGCCATGTTGCCCAGG--CTG--GTCTCG----AAC----TC-----CCGGNCTCAAGCGA---TCC-GCCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATTACAGGCGCGAGCCAC
Reference ( gi|3 ) : TCGCCATGTTGCCCAGG--CTG--CTGT-G----GGC----TC-----CTGGGCTCAAGAGA---GCC-GCCTACCTCAGCCTCCCAAA-G--T-GCCAGGATTACAGGTATGAGCCAC
gi|4 : TCACTATGTTGGCCAGG--CTGGCCTCC-A----A-C----TC-----CTGATCTC--GTGA---TCC-GTCCACCCCGACCTCCCAAA-G--T-GCTAGGATCATAGGCATAAGCCAC
gi|12 : TCACCATGTTAGCCAGG--CTG--AT----------C----TC-----CTGCCCTCAAGTGA---TCT-GTCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATT
gi|1 : TTGCTATGTTGCCCAGG--CTG--ATCTCG----AAC----TG-----CTAGGCTCAAGAAA---TAC-TCCCACCTCAGCCTCCT-GA-G--TAGCTGTGACCATAGGTACACACCAC
gi|7 : gtcTTGCTCTGTTTCCCAGGTTCTG--GAGT-GTAGTGGCGCAATCATAGGCCGGGCTCAAACAA---TCC-TCCCACCTCAGCCTCCTAAtgta
gi|8 : tcCACTATGTTGCCCAGG--CTA--GTCTCA----AAC----TC-----CCAGCCTGAAGCAA---TCC-TCCTGCTTTGGCCTCGAAAA-G--T-GCTGGGATTACAGGTGTGgtagc
gi|9 : CATGTTGCCCACG--CTG--GTCTCG----AAC----TC-----CTGTCCTCAAGCAATCCGCCTGCCTGCCTCGGCCGCCCACA-C--T-GCTGCTATTACAGG
gi|11 : tatCATTTTGGCCGGG--CTG--GTCTCG----AAC----TC-----CCGACCT--AGTGA---TCC-GCCCGCCTCGGCCTCCCAAA-GACT-GCTGGGAGTACA
gi|10 : TGTTGCCCAGG--CTG--GTCTCA----AAC----TC-----CTGGGTTCAAGCAA---TCC-ACCTGCCTCAACCTTTCAAA-T--T-GGT-GGATTACAGATGGGAGCCA
gi|5 : GTTGGCCAGGA-TTG--TCTT-G----ATC----TC-----TTTACCTC--GTGA---TCT-GCCTTCTTCGGCCTTCCAAA-G--T-GCTGGGATTGTAGGTGTGAGCCAC
gi|2 : C----TC-----CTGGGCTCAAGCCA---TCT-GCCCACCTCAG-CTTCTAGA-G--TAGCTGGGACTACAGGTGCGCACCAcacgcc
gi|6 : ctccacGGCTC----GA---TCC-TCCCACCTCAGCCTTCC-GA-G--TAGCTGGAATCACAGGCACATGTCACtcacacccagctaattttttgtattttta
gi|16 : ccaCCTTGGCCTCCCAAAAG--T-TCTGGAATTACATGCGTGAGCCACtgtgcccagctatgttttagttttttgtaga
gi|15 : gCTCGGCCCCCCAA--G--TAGCTGGAATTACAGGCACCTGCCACcatg
gi|18 : CAGCCTCCCAAA-G--T-GCTAGGATTAAAGGCATGAGCCACcatgcctggct
gi|22 : CCTCCCAAA-G--T-GCTGGGATTACAGGCATGAACCACcgctc
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): GCCTCCAGAGTAGCTGGGACTACAGGTTCCCGCCACCACACCCAGCTAATTTTTTGTGTTTTTAGTAAAG
Unaligned ( gi|14 ): TCCCAGGTAGCTGGGATTACAGGTGCCTGCCATCAAGCCTGGCTAATTTTTGTATTTTTCAGTAGAGA
Unaligned ( gi|17 ): ACCTGAGACTACAGGCGCGCACCACCACACCGGCTGACTTTTATGT
Unaligned ( gi|19 ): CTCACTGCAACCTCCACCTCCCACGTGCAAGCAATTCTC
Unaligned ( gi|20 ): GCAAGCAGCAAGTTTTCTATTTCGAGTAAAGACGTAATT
Unaligned ( gi|21 ): TCAAGCCCAGCTAATTTTTTAAATTTTGTAGAAACGAGG
Alignments
lowQualScore : 1
lowQualScore : 1 3 4444 3 1 8888 2 33 0 1 0
lowQualScore : . . .... . . .... . .. . . .
lowQualScore : 1 2 1111 2 4 5555 7 77 7 4 1
consensus : TCGCCATGTTGCCCAGGCTGGTCTCGAACTCCCGGNCTCAAGCGATCC----GCCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATTACAGGCGCGAGCCAC
Reference ( family-4443 ) : TCGCCATGTTGCCCAGGCTGGTCTCGAACTCCCGGNCTCAAGCGATCC----GCCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATTACAGGCGCGAGCCAC
gi|1 : TTGCTATGTTGCCCAGGCTGATCTCGAACTGCTAGGCTCAAGAAATAC----TCCCACCTCAGCCTCCT-GA-G--TAGCTGTGACCATAGGTACACACCAC
gi|10 : gtcTGTTGCCCAGGCTGGTCTCAAACTCCTGGGTTCAAGCAATCC----ACCTGCCTCAACCTTTCAAA-T--T-GGT-GGATTACAGATGGGAGCCAtgta
gi|11 : CATTTTGGCCGGGCTGGTCTCGAACTCCCGACCT--AGTGATCC----GCCCGCCTCGGCCTCCCAAA-GACT-GCTGGGAGTACA
gi|12 : TCACCATGTTAGCCAGGCTGATCTC---CTGCC---CTCAAGTGATCT----GTCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATT
gi|14 : TCCCAG--G--TAGCTGGGATTACAGGTGCCTGCCA
gi|15 : CTCGGCCCCCCAA--G--TAGCTGGAATTACAGGCACCTGCCACtcaagcctggctaatttttgtatttttcagtagaga
gi|16 : GCCTTGGCCTCCCAAAAG--T-TCTGGAATTACATGCGTGAGCCACcatgcctggct
gi|18 : CAGCCTCCCAAA-G--T-GCTAGGATTAAAGGCATGAGCCACcatg
gi|2 : CTCCACCTCCTGGGCTCAAGCCATCT----GCCCACCTCAG-CTTCTAGA-G--TAGCTGGGACTACAGGTGCGCACCAcgctc
gi|22 : CCTCCCAAA-G--T-GCTGGGATTACAGGCATGAACCACtcacacccagctaattttttgtattttta
gi|3 : TCGCCATGTTGCCCAGGCTGCTGT-GGGCTCCTGGGCTCAAGAGAGCC----GCCTACCTCAGCCTCCCAAA-G--T-GCCAGGATTACAGGTATGAGCCACt
gi|4 : TCACTATGTTGGCCAGGCTGGCCTCCAACTCCTGATCTC--GTGATCC----GTCCACCCCGACCTCCCAAA-G--T-GCTAGGATCATAGGCATAAGCCAC
gi|5 : GTTGGCCAGGATTGTCTTGATCTCTTTACCTC--GTGATCT----GCCTTCTTCGGCCTTCCAAA-G--T-GCTGGGATTGTAGGTGTGAGCCAC
gi|8 : CACTATGTTGCCCAGGCTAGTCTCAAACTCCCAGCCTGAAGCAATCC----TCCTGCTTTGGCCTCGAAAA-G--T-GCTGGGATTACAGGTGTcacgcc
gi|9 : CATGTTGCCCACGCTGGTCTCGAACTCCTGTCCTCAAGCAATCCGCCTGCCTGCCTCGGCCGCCCACA-C--T-GCTGCTATTACAGG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAGGCTCGATCCTCCCACCTCAGCCTTCCGAGTAGCTGGAATCACAGGCACATGTCACTGTGCCCAGCTATGTTTTAGTTTTTTGTAGA
Unaligned ( gi|7 ): TCTTGCTCTGTTTCCCAGGTTCTGGAGTGTAGTGGCGCAATCATAGGCCGGGCTCAAACAATCCTCCCACCTCAGCCTCCTAAGTAGC
Unaligned ( gi|13 ): GCCTCCAGAGTAGCTGGGACTACAGGTTCCCGCCACCACACCCAGCTAATTTTTTGTGTTTTTAGTAAAG
Unaligned ( gi|17 ): ACCTGAGACTACAGGCGCGCACCACCACACCGGCTGACTTTTATGT
Unaligned ( gi|19 ): CTCACTGCAACCTCCACCTCCCACGTGCAAGCAATTCTC
Unaligned ( gi|20 ): GCAAGCAGCAAGTTTTCTATTTCGAGTAAAGACGTAATT
Unaligned ( gi|21 ): TCAAGCCCAGCTAATTTTTTAAATTTTGTAGAAACGAGG
Alignments
lowQualScore : 1
lowQualScore : 1 3 4444 3 1 8888 2 33 0 1 0
lowQualScore : . . .... . . .... . .. . . .
lowQualScore : 1 2 1111 2 4 5555 7 77 7 4 1
consensus : TCGCCATGTTGCCCAGGCTGGTCTCGAACTCCCGGNCTCAAGCGATCC----GCCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATTACAGGCGCGAGCCAC
Reference ( family-4443 ) : TCGCCATGTTGCCCAGGCTGGTCTCGAACTCCCGGNCTCAAGCGATCC----GCCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATTACAGGCGCGAGCCAC
gi|1 : TTGCTATGTTGCCCAGGCTGATCTCGAACTGCTAGGCTCAAGAAATAC----TCCCACCTCAGCCTCCT-GA-G--TAGCTGTGACCATAGGTACACACCAC
gi|10 : gtcTGTTGCCCAGGCTGGTCTCAAACTCCTGGGTTCAAGCAATCC----ACCTGCCTCAACCTTTCAAA-T--T-GGT-GGATTACAGATGGGAGCCAtgta
gi|11 : CATTTTGGCCGGGCTGGTCTCGAACTCCCGACCT--AGTGATCC----GCCCGCCTCGGCCTCCCAAA-GACT-GCTGGGAGTACA
gi|12 : TCACCATGTTAGCCAGGCTGATCTC---CTGCC---CTCAAGTGATCT----GTCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATT
gi|14 : TCCCAG--G--TAGCTGGGATTACAGGTGCCTGCCA
gi|15 : CTCGGCCCCCCAA--G--TAGCTGGAATTACAGGCACCTGCCACtcaagcctggctaatttttgtatttttcagtagaga
gi|16 : GCCTTGGCCTCCCAAAAG--T-TCTGGAATTACATGCGTGAGCCACcatgcctggct
gi|18 : CAGCCTCCCAAA-G--T-GCTAGGATTAAAGGCATGAGCCACcatg
gi|2 : CTCCACCTCCTGGGCTCAAGCCATCT----GCCCACCTCAG-CTTCTAGA-G--TAGCTGGGACTACAGGTGCGCACCAcgctc
gi|22 : CCTCCCAAA-G--T-GCTGGGATTACAGGCATGAACCACtcacacccagctaattttttgtattttta
gi|3 : TCGCCATGTTGCCCAGGCTGCTGT-GGGCTCCTGGGCTCAAGAGAGCC----GCCTACCTCAGCCTCCCAAA-G--T-GCCAGGATTACAGGTATGAGCCACt
gi|4 : TCACTATGTTGGCCAGGCTGGCCTCCAACTCCTGATCTC--GTGATCC----GTCCACCCCGACCTCCCAAA-G--T-GCTAGGATCATAGGCATAAGCCAC
gi|5 : GTTGGCCAGGATTGTCTTGATCTCTTTACCTC--GTGATCT----GCCTTCTTCGGCCTTCCAAA-G--T-GCTGGGATTGTAGGTGTGAGCCAC
gi|8 : CACTATGTTGCCCAGGCTAGTCTCAAACTCCCAGCCTGAAGCAATCC----TCCTGCTTTGGCCTCGAAAA-G--T-GCTGGGATTACAGGTGTcacgcc
gi|9 : CATGTTGCCCACGCTGGTCTCGAACTCCTGTCCTCAAGCAATCCGCCTGCCTGCCTCGGCCGCCCACA-C--T-GCTGCTATTACAGG
blockSeqs : C A TGGG A C GCCT A AC A G
blockSeqs : G G CGAC A T . . . A C
blockSeqs : G C TGGG A T . . . A C
blockSeqs : C G TGGG A C . . . . T
blockSeqs : G C TGAT A A . . . . T
blockSeqs : G G TTAC A T . . . . C
blockSeqs : C A CAGC . T . . . . T
blockSeqs : C G TGTC . C . . . . T
blockSeqs : . C . C . . . . T
blockSeqs : . . . T
blockSeqs : . . . T
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TCGCCATGTTGCCCAGGCTGGTCTCGAACTCCCGGNCTCAAGCGATCC----GCCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATTACAGGCGCGAGCCAC
finalCons : TCGCCATGTTGCCCAGGCTGGTCTCGAACTCCCGGNCTCAAGCGATCC----GCCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATTACAGGCGCGAGCCAC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAGGCTCGATCCTCCCACCTCAGCCTTCCGAGTAGCTGGAATCACAGGCACATGTCACTGTGCCCAGCTATGTTTTAGTTTTTTGTAGA
Unaligned ( gi|7 ): TCTTGCTCTGTTTCCCAGGTTCTGGAGTGTAGTGGCGCAATCATAGGCCGGGCTCAAACAATCCTCCCACCTCAGCCTCCTAAGTAGC
Unaligned ( gi|13 ): GCCTCCAGAGTAGCTGGGACTACAGGTTCCCGCCACCACACCCAGCTAATTTTTTGTGTTTTTAGTAAAG
Unaligned ( gi|17 ): ACCTGAGACTACAGGCGCGCACCACCACACCGGCTGACTTTTATGT
Unaligned ( gi|19 ): CTCACTGCAACCTCCACCTCCCACGTGCAAGCAATTCTC
Unaligned ( gi|20 ): GCAAGCAGCAAGTTTTCTATTTCGAGTAAAGACGTAATT
Unaligned ( gi|21 ): TCAAGCCCAGCTAATTTTTTAAATTTTGTAGAAACGAGG
Alignments
lowQualScore : 1
lowQualScore : 1 3 4444 3 1 8888 2 33 0 1 0
lowQualScore : . . .... . . .... . .. . . .
lowQualScore : 1 2 1111 2 4 5555 7 77 7 4 1
consensus : TCGCCATGTTGCCCAGGCTGGTCTCGAACTCCCGGNCTCAAGCGATCC----GCCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATTACAGGCGCGAGCCAC
Reference ( family-4443 ) : TCGCCATGTTGCCCAGGCTGGTCTCGAACTCCCGGNCTCAAGCGATCC----GCCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATTACAGGCGCGAGCCAC
gi|1 : TTGCTATGTTGCCCAGGCTGATCTCGAACTGCTAGGCTCAAGAAATAC----TCCCACCTCAGCCTCCT-GA-G--TAGCTGTGACCATAGGTACACACCAC
gi|10 : gtcTGTTGCCCAGGCTGGTCTCAAACTCCTGGGTTCAAGCAATCC----ACCTGCCTCAACCTTTCAAA-T--T-GGT-GGATTACAGATGGGAGCCAtgta
gi|11 : CATTTTGGCCGGGCTGGTCTCGAACTCCCGACCT--AGTGATCC----GCCCGCCTCGGCCTCCCAAA-GACT-GCTGGGAGTACA
gi|12 : TCACCATGTTAGCCAGGCTGATCTC---CTGCC---CTCAAGTGATCT----GTCCGCCTCGGCCTCCCAAA-G--T-GCTGGGATT
gi|14 : TCCCAG--G--TAGCTGGGATTACAGGTGCCTGCCA
gi|15 : CTCGGCCCCCCAA--G--TAGCTGGAATTACAGGCACCTGCCACtcaagcctggctaatttttgtatttttcagtagaga
gi|16 : GCCTTGGCCTCCCAAAAG--T-TCTGGAATTACATGCGTGAGCCACcatgcctggct
gi|18 : CAGCCTCCCAAA-G--T-GCTAGGATTAAAGGCATGAGCCACcatg
gi|2 : CTCCACCTCCTGGGCTCAAGCCATCT----GCCCACCTCAG-CTTCTAGA-G--TAGCTGGGACTACAGGTGCGCACCAcgctc
gi|22 : CCTCCCAAA-G--T-GCTGGGATTACAGGCATGAACCACtcacacccagctaattttttgtattttta
gi|3 : TCGCCATGTTGCCCAGGCTGCTGT-GGGCTCCTGGGCTCAAGAGAGCC----GCCTACCTCAGCCTCCCAAA-G--T-GCCAGGATTACAGGTATGAGCCACt
gi|4 : TCACTATGTTGGCCAGGCTGGCCTCCAACTCCTGATCTC--GTGATCC----GTCCACCCCGACCTCCCAAA-G--T-GCTAGGATCATAGGCATAAGCCAC
gi|5 : GTTGGCCAGGATTGTCTTGATCTCTTTACCTC--GTGATCT----GCCTTCTTCGGCCTTCCAAA-G--T-GCTGGGATTGTAGGTGTGAGCCAC
gi|8 : CACTATGTTGCCCAGGCTAGTCTCAAACTCCCAGCCTGAAGCAATCC----TCCTGCTTTGGCCTCGAAAA-G--T-GCTGGGATTACAGGTGTcacgcc
gi|9 : CATGTTGCCCACGCTGGTCTCGAACTCCTGTCCTCAAGCAATCCGCCTGCCTGCCTCGGCCGCCCACA-C--T-GCTGCTATTACAGG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAGGCTCGATCCTCCCACCTCAGCCTTCCGAGTAGCTGGAATCACAGGCACATGTCACTGTGCCCAGCTATGTTTTAGTTTTTTGTAGA
Unaligned ( gi|7 ): TCTTGCTCTGTTTCCCAGGTTCTGGAGTGTAGTGGCGCAATCATAGGCCGGGCTCAAACAATCCTCCCACCTCAGCCTCCTAAGTAGC
Unaligned ( gi|13 ): GCCTCCAGAGTAGCTGGGACTACAGGTTCCCGCCACCACACCCAGCTAATTTTTTGTGTTTTTAGTAAAG
Unaligned ( gi|17 ): ACCTGAGACTACAGGCGCGCACCACCACACCGGCTGACTTTTATGT
Unaligned ( gi|19 ): CTCACTGCAACCTCCACCTCCCACGTGCAAGCAATTCTC
Unaligned ( gi|20 ): GCAAGCAGCAAGTTTTCTATTTCGAGTAAAGACGTAATT
Unaligned ( gi|21 ): TCAAGCCCAGCTAATTTTTTAAATTTTGTAGAAACGAGG