lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 55 4 1 22 1 11 555 1 333333333 555555 4 2 7777777777777777777777777777777777777777777777777777 33 333333333 222 2 2 1 33 22 22 1 44444 6666666666666666 22222 333333333333333333 111 11 4444444444444444444444444444444 222222 3333333333 11 3333333333 33 111 22 666666 11 55555555 11111 333333333333333333 22 3333333333333333 33333333333333333 1 33333333 222222 1 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 77777777777777777777 11111 2222222 4444444444444 3 6666666666666666666666666666666666666666666666666666 11111 1 222 1111
lowQualScore : 55 0 2 77 5 44 999 5 55 2 999999999 999999 3 0 0 6666666666666666666666666666666666666666666666666666 7 33 6 777777777 111 0 4 1 55 88 3 0 33 00 0 11111 5 555 6666666666666666 5 88888 777777777777777777 6 888 6 99 6 6 55 77 5 5 2222222222222222222222222222222 222222 8888888888 33 4 4 3333333333 5 5 55 5 1 5 000 0 77 5 77 5 111111 11 11111111 2 22222 111111111111111111 00 3 7 4444444444444444 0 00000000000000000 0 33333333 888888 0 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 0 55555555555555555555 6 99 1 00000 777 5 1111111 5 5 5 0 5 7777777777777 6 77 4444444444444444444444444444444444444444444444444444 4 4 00000 4 4 4 4 4 444 55 777 4 2222 4 4 4 777 1
lowQualScore : .. . . .. . .. ... . .. . ......... ...... . . . .................................................... . .. . ......... ... . . . .. .. . . .. .. . ..... . ... ................ . ..... .................. . ... . .. . . .. .. . . ............................... ...... .......... .. . . .......... . . .. . . . ... . .. . .. . ...... .. ........ . ..... .................. .. . . ................ . ................. . ........ ...... . . ....................................................................................... . . .................... . .. . ..... ... . ....... . . . . . ............. . .. .................................................... . . ..... . . . . . ... .. ... . .... . . . ... .
lowQualScore : 00 0 0 33 0 00 555 0 55 5 000000000 000000 0 0 0 3333333333333333333333333333333333333333333333333333 3 33 7 777777777 888 0 0 8 00 88 8 8 22 00 6 99999 7 999 4444444444444444 7 55555 333333333333333333 7 333 7 22 7 7 77 99 7 7 9999999999999999999999999999999 111111 0000000000 11 4 4 4444444444 0 7 00 7 1 7 000 3 99 7 55 0 000000 00 22222222 5 00000 555555555555555555 22 2 0 2222222222222222 8 55555555555555555 0 22222222 888888 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 8 11111111111111111111 7 22 5 11111 333 7 4444444 7 7 7 7 7 3333333333333 7 99 5555555555555555555555555555555555555555555555555555 0 0 00000 5 0 0 0 0 555 55 000 0 7777 0 0 0 000 4
consensus : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTC-AACCCTAGAAGAACTTGATAC-TTTGCGNNGACCTTNCGATCCTGGCTGTCTCNAACGACACNCAG-CATATCCAAAGAGAGACNAAACAGTGCT-GCANNTAGCANACGAAAG--TGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-AC--C--TTAAT-GTGGGAAATGCCTGCTCCGGTTAA-GGTCAAT-GATGAAGAAC-TACGCCAGGACAAACAACTTCACATACC-TGGGTAGC-A-TTATCAATT--C---A-CAT-CAGA-GGGCG---ACAC----A-GA--G--G--G-ACA-T-C-ACAGC-AGA--CTTGG-TA-GG--CAG--GA-GA-GTATTT----NGAG-A---A-TTA-ATAAC-G-TCTGGA------GGTC----T--N--CCN-GTA-C-AGCA-ACGACACCAAGC-TGAAG-CTATA-C-AGA-GCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATGCTGGAGGAN-TTACAGA--GA-ATAGACCTTTCCAAA-T-A-CGATCCTTCCAACACAACATGCNTCTGCCGAANACTTAGGATATTCTGGC-AG---A-GAAGATAACCAACTGA---AGACAAC---TTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTA-C-------AT-ATNCAA--ATCAA--AC--GCCGAT-GGAGATGG-ATGAACAT-GTC--AC----CGA--A-ACCC-----------GTCAATAACAAGAA-G--CA--GCAC--GC----ACTG-GA--CACAGGAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--CG-G--TTGAGA-GC--GAGATAAAAG-C-GT-GCAGCA--GACCTGGG--GNTCA-C-TA-AC--------AAAGCTGGCCCAGGATA-GG-CAG-----GAGTGG-AGGAAACTTGTT-G-C-TGCCCTACA-CA--CC---A-C---CGGGT-GT-AAA-GG---ACGATGAT
Reference ( gi|1 ) : AACAGAAGAAGGGGGA--CGCTGTGGAGCCTTTTCTCAAAACCTAGAAGAACTTGATACATATGCGGAGACCTTGCG---CTGGCTGTCTC--ACGACACACAGTCATATCC-AAGAGA---AAAAC-G-GCTCGCAACTAGCAAACGAAGG--TGGGTC-TACGTTAATCAAGTACCAAGA-GACGGAGACGATGAAT--C--TTAATTGTGGGAAATGC-TGCACCGGTTA--GGTCAAT-GATGAAGAAA-TACGCCAGGACAAACAA--TC-CATACC-TGGGTAGC-A-TTATCAATT--C--TA-CATACAGA-GGG-G---ACAC----A-GA--G--A--G-ACA-T-C-ACAGC-AGA--CTTGG-TA-GG--CAG--GA-GA-GT-TTT----GCAG-A---A-TTA-ATAAA-A-TCTGGA------GGTC----T--T--CCT-GTA-C-AGCA-A-GACAC--AGC-TGAAG-TTAT--C-AAA-GCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATCCTGGA--AT-CTACAGA--GA-ATAGGTTTTTCCAAA-T-A-CGATCCTTCCAGCACAACATACGTCTGCCGATAACTTAGGATATTCTTGC-AG---A-AAAG-TAACCAACTGA---AGACAAC---TTAT-AAATAGATT-GT-A-GCAAGA------AGACATG-GGTA-C-------AT-ATATAA--ATCAA--ACGGGCCGGTAGGAGATGG-ATGAACATAGTT--ATG---CAAAAAAACC------------GTCCATAACAAGAA-G--CA--G-AC--GC----ACTG-GA--CACAGAAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C--G--TTGAGATGC--GAGATAAGAA-C-AT-A-AGCA--AAC-TGGG--GTCCAGT-TA-AC--------AA--CTGGCCCAGGATA-GG-CAG-----GA-TGG-AGGAAACTTGTT-G-C-TGTCCTAAC-CA--CC---A-C---CGGGT-GT-AAA-GG---ATGATGAT
gi|20 : AAGGGGGATCCGCTG--GAACCTTTTCTC-AACCCTAGAAGATCTTGA
gi|3 : acagaaaactctccGGAGC-TTTTCT--AACCCTAGAAGAACT-GATAC-T-TGCGGAGACCTTGCG---CTG-CTGTCTCC-ACG-CACCCAG-CATATCC-AAGAAAGACAAAACAG-GCT-GCAAC--ACATACGAAAGAGTGGGTCATACGT--AT-AAGTACCAAGAAGACGGAGACGATGA-T--C--TTAAT-GTGG-AAATGC-TGCACCGGTTATAGGTCAATTGATGAAGAAACTACGCCAGGACAA-CAA--TCACATACC-TGGGTAGC-A-TTATCAATT--C---A--AT-CAGA-GGG-C---GCAC----AAGA--G-----G-ACA-T-C-ACAGC-AGA--CTTGG-TAAGG--CAG--GA-GA-GTATTT----AGAG-A---AATTA-ATAAA---TCTGGA------GGTC----T--CA-CTT-GTA-C-AGCACA-GACAC--AGCCTGAAG-TTAT--A-AAA-GCTGTG---TTGTTTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGA--GA-TTACAGA--GA--TAGATGTTTC--AA-T-AACGATCCTTC--ACACAACATACGTCTGCCGATAACTTAGGATATTCTGCC-AGAGAA-AAAG-TA--CAAC-GA---AG--AAC---TTAT-AAATAGA-T-GTAA-GCAAGA------AGACATG-GGTAGC-------ATCATTCCC--ATCAA--AC--GCCGATGGAGGATGG-ATGAACATA-TC--A-----CGAAAAAACCCA----------GTCAATAACAAGAA----CA--GCACTTGC----ACTG-GA--CA-AG-AAGGCAAGAGG-AAGAGAGGG-AGA-C----C-AA
gi|2 : GGAGCTTTTTTTTAAACCCTAGAAATATCT--TAC-TTTG-GCCGACCTTTCGATCCTGG--GTCTCAAAC-ACACACAG-CATATCCAAAGAGA---CAAAC-ATACT-GCACATAGCAA--GA--G--T-GATC-TACG-TA--CAAGT--CAAGA--AT---GACGAT--AC--CAACTA--TATGTGAAATGT-CTCTTCGGTAA--CGTCAA---ACGA--AAC-TACGCCA-GACAA--AA--TA-CTTACC-TGTGTAGTAA-TTAT---TT--------CAAACAGA-TGG-GATAACAC----T-GA----------ACATT-C-AC-GC-AGATTCTT---TA-AG--CA---GA-GATAT-ACT----TCA--A---A-TGA-ATA------CTAGAACATATGATT----C--TACCCA-GTA-CGAGTA-A-CACAT--AGC-TGAAACTTAA--C-AGA-GTTG-GACTTTGTTTCA--GCTC-A-CTATA------------CCTGCA------TTCAGATCGA-A---ATCTTTCCAAT-T-A-CTATTCTTCCTATACAACATGCCTCT--CGA-AACTT--GAT-TTCTGG----------------ACTAAGTGATATAAACAACGAGCTAT-AATTAAATTAAT-A-GAAACAACCGTTAGACATGAGGTA-C--------C-ATCT----ATCAACTATGG------------TGG-AT-AACAT-GTCCGACGACCCACTCACACA------------GTCAAT-ACAAGAACG--CC--T-AT---C----ACTGTGC--CCCCAGAAGACAAGAGG--GGAGGACG-AG--C----CAAAGATA-CACAAT-GAGCA--GA--C--GGATTGAGA-AC--GA-ATAAAAG-G-CT----GCC--CAC-TGGT--ATTCATTATA-GA--------AA--CCTGAGCAG---A-AA-CAG-----AG-T-----GAAATTTGTT-------TTCTATA-CATCCC---A-C-----GGT-GT-AAA-GG---ca
gi|5 : --TGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATGTACTCC--TTAATGGTGA-AAGTGCCTGCTCCGGTTAA-GGTCAAT-GATGAAGAC--TCCGCCAG-ACAAACAACTTCACATACCCTGGGTAGC-AGTTATCAATT--CATCAGCAT-CAGA-GGGCG---ACAC----A-GAAGG--A--GGACA-T-CCACAGC-AGA--CTTGT-AA-GC--CAG--GAGGA-GTATTTAGGAGAAA-A---A-TTATATAAC-ATTCTGGAG-----GGTC----TACA--CTT-GTAGC-AGCACA-CAC-C--AGC-TGAAG-TTATA-CAAAA-GCTGTG---TT-TGTCAAGACCCTCACTATAtattatatat
gi|6 : caaaaaccatatgcagaaagaagatacgcT--C--TTAAT-GTGG-AAATGCCTGCTCCGGTTAA-GGTCAAT-GATGAAGAAC-TACGCCAG-ACAAACAACTTCACATACC-TGGGTAGC-A-TTATCAATT--CA-TAACAT-CAGA-GGGCG---ACAC----A-AA--G--GAGG-ACA-T-CCACAGC-AGA--CTTGG-TA-AGGCCAG--GA-GA-GTATTT----AGAG-A---AATTA-ATAAC-A-TCTGGA------GGTC----T--A--CCTTGTA-C-AGCA-CCAACACCAAGC-TGAAG-TTATA-C-AAAAGCTGTG---TTGTTTCA--ACCCTC-CTAT-ACGGATCAGAATGCTGGA--AGATTACAGA--GA-gtcg
gi|9 : GGAAATGCCTACTTCGGTTAA-GGTCAAT-GA---AGAAC-TACGCCA-GACAGACAACTTCACATACT-AAAGT------TTATCCATTGAA--GA-TATACAAA-Gta
gi|14 : cttaaagt-CATACC-TGGGTAGT-A-TCATC----------A-CAT-CAGACGGC-G---GCAC----A-GA--GGAG--G-ACA-TCC-ACAGC-AGA--CATGG-TA-AGGTCAA--GA-GA-GTATTT----AGAGAA---A-TTA-AT----G-TGTGGA------GGTC----TA-C--CCA-GTA-C-AGCA-atatcgacaaagattcgaactaaattattatacccagtacagcaccaacaccaagctaaagctataccatagctgtgttgtttcaaacctcctatacggatcagaatgc
gi|12 : ttca-CGTACA-TGGGTAGC-A-CCATC------C--CA-TAT-CTGA-GAGCA---ACATCGAAA-AA--G--A--G-GAA-T----CAGCAAGA--CTCGGCTT-GG--CAGTCCA-G--GC-TTT----CAAGAA---A-CTA-TCAAACG-TCTGGA------AGTCAACGT--C--CCT-TAA-C-ACCA-A-GACAA--ACC-TGAAccaac
gi|7 : ttca--CAG--GG-GA-GT-TTT-----TAG-AGAAA-TGA-ATAGC-A-TATGGA------GTTC----T--A--CCCAGTA-C----------CA---AGC-TGAAA-CTATATC-AGA-GCTGTG---TTGTATCA--ACCCTC-CTAT-ATGGATCAGAATCCTGGAGGAT--TACAGA--GACATA--CCTTTCCAAATT-A-CGATCCTTCCA-CACAACAGGCTACCGCCGAATACTTAGGATGTTCTTGCTAG---A-GAAGATAACCAA-TGA---AGACA
gi|4 : c--CCA-GTA-C-AGCA-CCGACACCAAGC-TGAAA-CTATACC-AGC-GCTGTG---TTGTCTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGAGGAT--TACAGA--GA--CAGACCTTTCCAAA-TTA-CGATTCTTCCA----------------CCGAATACATAGGATATTCTGGCCAG---A-GAAGATAACCAA-TGA----GAC--C---TTATTAAATAGATC-AA-T-GCAAGG------AGACATA-GGTA-CCGCCTCAAT-TTACAA----CA--------CCGAT--GAGATGTTATAGACAT-GTC--CTT---CGA-----CCCCCCCCCCCCCAGTCAATAACAAGAATGTTCA--G--C--GCTGCAGCTG-GA--CGCAACGAG-CAAGAGG-A-GAGAGGG-AGGCC----C-AAGA-AACAT-AT-GGAGA--AGGAC--G--GTGAGA-GC--GAGATAAAAG-CTGT-GCAGCAGGACC-TGGG--GATCA-C-TA-CC--------AAAGCTG-CCCAGGAT--GG-CAG-----GA-GGGGAGGAATTTTGTTTG-C-TGC---AAC-CA--AC---A-CAACTGGGT-GT-AAAGGG---ATGATGAtgggtaccatcattaccaaacgcc
gi|9 : tac--CCA-GTA-C-AGCA-CCAACACCAAGC-TAAAG-CTATACC-ATA-GCTGTG---TTGTTTCA--AACCTC-CTAT-ACGGATCAGAAT
gi|18 : cttaaagtggaaatgcctacttcggttaaggtcaatgaagaactacgccagacagacaacttcacatactaaagtttatccattgaagatatacaaagatatcgacaaagattcgaactaaattattatacC-AG---AGAAAG-TAACCAAC-GA---AGA--AC---TTAT-TGATAGAT--GT-AAGCAAGA------AGACACG-GGTA-C-----------CATAATTACCAA--AC--GCCGAT-GGAGgc
gi|11 : c------------GTCAATAAAAAGAA----CA--GCACT-GC----ACTG-GA--CCCCAGGAGGCAAGAGG-AAGAGAAGG-GG--C----C-AAGA-A-CATCAT-GGAG---GA--CG-G--TTGAGA-AT--GAGATAAAAGCC-AT-GCAGCA--GA---GGA--GATCA-T-TA-ACTGTTACAAAG--CTGGCCCAGGATA-GG-CAG-----GA-
gi|15 : ccca------------GTCAATAACAAGAA----CATCG-CT--GC----ACTG-GA--CACTTGAAGGCAAGAGG-AAGTGAGGGAAG--C----C-AAGA-A-CATCATGGGACA--GGA-CG-G--TTGAGA-AC--GAAATAAAAG-C-gt
gi|8 : cccccaa--GC----ACTG-GAGACACAGAA-GGCAAGAGGTACGAGAGGG-AG--CGGACC-AAGA-A-CATCAT-GGAGAAGGA--CAGG--TTGAGAAGCAAGAGATAA-AA-C-CTGA-AGCA--GCC-TGGGAAGTCATGC-TACAC--------AAAGCTGGCCCAGGATATGGCCAGAAAGAGA-TGG-AGG-AACTTGTT-G-CTTGTCCTACA-CA--CC---ACC---CGGGTGGT-AAA-GG---A-GATGATtgt
gi|10 : agccaagatataaaacatatttCAGAA-GGCAAGAGG-AAGAGAGGG-AGG-C----C-AAGA-A-CATCAT-GGAGGAGGG--C--GG-TTGAGA-AC--AAGATAAAAG-CCGT-GCAGCA--GACCTGGG--GATCA-T-TA-AC--------AAAGCTGGCCCAGAATA-TG-CAG-----GAGTGG-AGGAAACTTGTT-G-C-TGTCCTACA-CA--CC---A-C---CGGGT-GT-AAA-GG---ACGATGATg
gi|13 : A-A-CATCAT-GGAGA--AGGACA-G--TTGAGA-GC--GAGATAAAAA-CCATGA-AGCA--GACCTGGG--GTC--AT-TA-AC--------AAAGCTGGCCCAGGATA-GG-CAG-----GAGTGG-AGGAAACTTGTT-G-C-TGTCCTACA-CA--CC---A-C---CGGGT-GT-AAA-GG---ATGATGATg
gi|17 : -AGCA--GACCTGGG--GATCA-C-TA-AC--------GA----AGCTCAGGA---------------G-TGG-AGGAAAATTGTT-G-C-TGCCCTTCA-CA--CC---A-C---TGGGT-GT-AAA-GGAAAATAATGATgt
gi|16 : c-AC--------AAAGCTGGCCCAGGATA-GG-CAG-----GAGTGG-AGGAAACTTGTT-G-C-TGTCCTACA-CA--CCGGAA-C---C-GGT-GTAAAA-GG---AC
gi|19 : ataaaagctgtgcagcagtcctggggatattATA-GG-CAG-----GA-GCG-AAGGAACTTGTT-GCC-TGCCCAACC-CA--CC---A-C-----GGT-GT-AAA------ACGGTGAtg
gi|21 : -GG-CAA-----GAGTGG-AGGAAACTGTTT-G-C-TGACCTATCACA--CC---A-----CGGG--GT-AAA-GG---ATGATgctgagg
gi|22 : gt-TGA-AATAAACATGTT-G-C-TGCCCTACA-CA--CA---A-C---AGGGT-GT-AAA-GG---ATGATGAT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): TTCCACACCAGAACAGAGGAATACAATTATAC
Unaligned ( gi|24 ): ATTAAAGCTTATCCATTAAAGATAAACAAAGT
Alignments
lowQualScore : 11 1 111 22 333 11 222222 1 222222222 222 1 11 1 11 1 22222 2 222222222 111111 222222 111 11 111111111 1111111 2222 11 222 11 2222 11111 1 11 11 1 111 11 111 111 2222222 222222 33333333333 11 1 1 9999999999999999999999999999 444444444444 1111111 222222 1111 111 111 222222
lowQualScore : 88 0 2 6 6 666 55 00 6 22 1 777 33 444444 1 3 999999999 222 7 999 4 33 2 0 33 0 3 3 3 77777 99 6 2 9 1 1 6 99 6 3 6 0 5 8888 66 111111111 5 77 0 666666 777777 777 5 77 666 33 5 5 3 1 555555555 5 66 5 66 999 5 7777777 88 4 2222 33 4 111 1 888 66 5 88 7777 99 22222 8 6 44 22 44 5 00 0 3 3 444 88 111 55 444 8 9999999 333333 8 99999999999 8 0 11 8 88 0 6 0 7777777777777777777777777777 222222222222 5 5 999 999 5 2 5 7777777 5 5 5 5 222222 5 5 5 5 66 7777 1 000 4 5 111 111111 1 44 7777 3 3 3 3 3 55 3 666 3 4 3 3 6
lowQualScore : .. . . . . ... .. .. . .. . ... .. ...... . . ......... ... . ... . .. . . .. . . . . ..... .. . . . . . . .. . . . . . .... .. ......... . .. . ...... ...... ... . .. ... .. . . . . ......... . .. . .. ... . ....... .. . .... .. . ... . ... .. . .. .... .. ..... . . .. .. .. . .. . . . ... .. ... .. ... . ....... ...... . ........... . . .. . .. . . . ............................ ............ . . ... ... . . . ....... . . . . ...... . . . . .. .... . ... . . ... ...... . .. .... . . . . . .. . ... . . . . .
lowQualScore : 00 0 5 5 5 222 88 77 7 00 0 333 33 333333 0 3 000000000 777 3 333 0 88 5 0 88 0 2 2 2 22222 22 7 5 3 0 0 7 88 7 3 7 1 0 4444 22 999999999 7 99 1 444444 444444 333 7 99 111 88 0 0 4 0 555555555 0 99 0 99 555 0 6666666 99 0 3333 99 4 222 1 888 99 0 77 3333 22 11111 0 0 66 00 88 0 22 8 8 3 888 22 777 77 000 0 2222222 000000 0 44444444444 0 8 00 0 88 0 5 0 2222222222222222222222222222 888888888888 7 7 333 333 0 0 0 5555555 0 0 0 0 555555 0 0 0 0 99 2222 1 333 4 3 222 777777 1 33 7777 3 6 6 6 6 00 6 444 6 3 6 6 4
consensus : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTCAA-C-CCTAGAAGAACTTGATACTT-TGCGGAGACCTTGCG---CTGGCTGTCTC-AACGACACACAG-CATATCCAA-GAGAGA-AAAACGGCNCTGCAACTAGCA-ACGAAAG--TGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--CC--TTAAT-GTGGGAAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-GACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTC---A----CAT-CAGA--GGGCGACAC------AGA---G--GGACA-TCCACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GTATTTAG----A--GAAA-T--TA-AT--AACA-TCTGGA-GGTC----T-NCC-NGTAC-AGCACCG-ACACCAAG-CTGAAGCTATA-C-AGAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATGCTGGAGGA-TTACAGA--GA-ATAGATCTTTCCAAA-T-ACGATCCTTCCAACACAACATGCNTCTGCCGAANACTTAGGATATTCTGGC-AGAGAAGA--TAACCAACTGA---AGACAAC---TTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTA-CAT-ATTCAAATCA-AACG--CCGAT-GGA-GATGG-ATGAACAT-GTCAC--CG---A-AAC--CC---------GTCAATAACAAGAA-G--CAGCGCT-GCA-CTG-GA--CACAA-GAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C-GG-TTGAG-A-GC--GAGATAAAAG-C-GTGCAGCAG-ACCTGGG-GATCA--TTA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGC--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
Reference ( family-4402 ) : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTCAA-C-CCTAGAAGAACTTGATACTT-TGCGNNGACCTTNCGATCCTGGCTGTCTCNAACGACACNCAG-CATATCCAAAGAGAGACNAAACAGTGCTGCANNTAGCANACGAAAG--TGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--CC--TTAAT-GTGGGAAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCAGGACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTC---A----CAT-CAGA--GGGCGACAC------AGA---G--GGACA-T-CACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GTATTTNG----A--G-AA-T--TA-AT--AACG-TCTGGA-GGTC----T-NCC-NGTAC-AGCAACG-ACACCAAG-CTGAAGCTATA-C-AGAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATGCTGGAGGANTTACAGA--GA-ATAGACCTTTCCAAA-T-ACGATCCTTCCAACACAACATGCNTCTGCCGAANACTTAGGATATTCTGGC-AGAGAAGA--TAACCAACTGA---AGACAAC---TTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTA-CAT-ATNCAAATCA-AACG--CCGAT-GGA-GATGG-ATGAACAT-GTCAC--CG---A-AAC--CC---------GTCAATAACAAGAA-G--CAGCAC--GCA-CTG-GA--CACAG-GAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C-GG-TTGAG-A-GC--GAGATAAAAG-C-GTGCAGCAG-ACCTGGG-GNTCA--CTA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGC--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
gi|1 : AAGGGGGA--CGCTGTGGAGCCTTTTCTCAA-AACCTAGAAGAACTTGATACATATGCGGAGACCTTGCG---CTGGCTGTCTC--ACGACACACAGTCATATCCAA---GAGA-AAAACGGCTC-GCAACTAGCAAACGAAGG--TGGGTC-TACGTTAATCAAGTACCAAGA-GACGGAGACGATG-AA-TC--TTAATTGTGGGAAATGC-TGCACCGGTTA--GGTCAA-TGATGAAG-AAATACGCCAGGACAAACAA--TC-CATA-CCTGGGTAGC-A-TTATCAATTCT--A----CATACAGA--GGG-GACAC------AGA---G--AGACA-T-CACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GT-TTTGC----A--G-AA-T--TA-AT--AAAA-TCTGGA-GGTC----T-TCC-TGTAC-AGCAA-G-ACAC--AG-CTGAAGTTAT--C-AAAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATCCTGGA--ATCTACAGA--GA-ATAGGTTTTTCCAAA-T-ACGATCCTTCCAGCACAACATACGTCTGCCGATAACTTAGGATATTCTTGC-AGAAAAG---TAACCAACTGA---AGACAAC---TTAT-AAATAGATT-GT-A-GCAAGA------AGACATG-GGTA-CAT-ATATAAATCA-AACGGGCCGGTAGGA-GATGG-ATGAACATAGTTATG-CA---A-AAAAACC---------GTCCATAACAAGAA-G--CAG-AC--GCA-CTG-GA--CACAG-AAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C--G-TTGAG-ATGC--GAGATAAGAA-C-ATA-AGCAA-A-CTGGG-GTCCAG-TTA------ACAA--CTGGCCCAGGATA-GGC----AGGA--TGGAG-GAAACTTG-TTG-C-TGT--CCTA-ACCACC---A-CCGGGT-GT-AAAGGATGATGAT
gi|10 : aacagaag-GAAGGCAAGAGG-AAGAGAGGG-AGG-C----C-AAGA-A-CATCAT-GGAGGAGGG--C-GG-TTGAG-A-AC--AAGATAAAAG-CCGTGCAGCAG-ACCTGGG-GATCA--TTA------ACAAAGCTGGCCCAGAATA-TGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
gi|11 : caC--CA---------GTCAATAAAAAGAA----CAGCACT-GCA-CTG-GA--CCCCA-GGAGGCAAGAGG-AAGAGAAGG-GG--C----C-AAGA-A-CATCAT-GGAG---GA--C-GG-TTGAG-A-AT--GAGATAAAAGCC-ATGCAGCAG-A---GGA-GATCA--TTAACTGTTACAAAGCTGGCCCAGGATA-GGC----AGGAG-Tg
gi|12 : cTTCACGTA-CATGGGTAGC-A-CCATC---CC---A----TAT-CTGA--GAGCAACATCGAAAAAGA---G--GAAT------CAGCAAGA--CTCGGCT-TGG--CAGTC-CA-GGCTTTCA----A--G-AA-A--CT-ATCAAACG-TCTGGA-AGTCAACGT-CCC-TTAAC-ACCAA-G-ACA--AAC-CTGAA
gi|13 : A-A-CATCAT-GGAGA--AGGAC-AG-TTGAG-A-GC--GAGATAAAAACC-ATGAAGCAG-ACCTGGG-G-TCA--TTA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACC---A-CCGGGT-GT-AAAGGATGATGAT
gi|14 : TTCACATA-CCTGGGTAG-----TATCA--TC---A----CAT-CAGA--CGGCGGCAC------AGA---GGAGGACA-TCCACAGC-AGA--CATGG-T-AAGGTCAAGA-GA-GTATTTAG----A--GAAA-T--TA-AT-----G-TGTGGA-GGTC----TACCC-AGTAC-AGCACCA-ACgt
gi|15 : ---------GTCAATAACAAGAA----CATCGCT-GCA-CTG-GA--CACTT-GAAGGCAAGAGG-AAGTGAGGGAAG--C----C-AAGA-A-CATCATGGGACA--GGA-C-GG-TTGAG-A-AC--GAAATAAAAG-C-
gi|16 : cccccaaATAAAAG-CTGTGCAGCAG-TCCTGGG-GAT-A--TTA-------CAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACCGGAA-CC-GGT-GTAAAAGGACtgt
gi|17 : CAGCAG-ACCTGGG-GATCA--CTA------ACGAAGCT--------------C----AGGAG-TGGAG-GAAAATTG-TTG-C-TGC--CCTT-CACACC---A-CTGGGT-GT-AAAGGAAAATAATtg
gi|18 : C-AGAGAAAG--TAACCAAC-GA---AGA--AC---TTAT-TGATAGAT--GT-AAGCAAGA------AGACACG-GGTACCATAATT---ACCA-AACG--CCGAT-GGA-Ggat
gi|19 : cATA-GGC----AGGAG-CGAAG-G-AACTTG-TTGCC-TGC--CCAA-CCCACC---A-C--GGT-GT-AAA--ACGGTGA
gi|2 : -GGAGCTTTTTTTTAAAC-CCTAGAAATATCT--TACTT-TG-GCCGACCTTTCGATCCTGG--GTCTCAAAC-ACACACAG-CATATCCAAAGAGA---CAAACA-TACTGCACATAGCA----AGAG--T-GATC-TACGT--AC-AAGT--CAAGAAT-----GACGAT--A--CCAACT-AT-ATGTGAAATGTCT-CTTCGG-TA-ACGTCAA---ACGA---AACTACGCCA-GACAAAATACT-----TA-CCTGTGTAGTAA-TTAT---TTC---A----AA--CAGATGGGATAACAC------TGA--------ACATT-CAC-GC-AGATTCTT---T-AAG--CA-GA-GATATACTTCA----AATG-AA-TACTA-G---AACA-TATG---ATTC----TACCC-AGTACGAGTAAC--ACAT--AG-CTGAAACTTAA-C-AGAGTTG-GACTTTGTTTCA--GCTC-A-CTATACC---------TGC------ATT--CAGATCGA-A---ATCTTTCCAAT-T-ACTATTCTTCCTATACAACATGCCTCT--CGAA-ACTT--GAT-TTCTGG--------------ACTAAGTGATATAAACAACGAGCTAT-AATTAAATTAAT-A-GAAACAACCGTTAGACATGAGGTA-C-C-ATCT--ATCA-A------CTAT-GG----TGG-AT-AACAT-GT--C--CG---ACGAC--CCACTCACACAGTCAAT-ACAAGAACG--C--CTA--TCA-CTGTGC--CCCCA-GAAGACAAGAGG--GGAGGACG-AG--C----CAAAGATA-CACAAT-GAGCA--GA--C-GGATTGAG-A-AC--GA-ATAAAAG-G-CTGC-CCA----CTGGT-ATTCA--TTAT-----AGAAACCTG-----------AGC----AGAAA-CAGAGTGAAATTTG-TT----TTC--TATA-CATCCC---A-C--GGT-GT-AAAGGgctgagg
gi|20 : AAGGGGGATCCGCTG-GAA-CCTTTTCTCAA-C-CCTAGAAGATCTTGAtattatatat
gi|21 : acagaaaactctcc-GGC----AAGAG-TGGAG-GAAACTGT-TTG-C-TGA--CCTATCACACC---A--CGGG--GT-AAAGGATGAT
gi|22 : gtAG-TGAAA-TAAACATG-TTG-C-TGC--CCTA-CACACA---A-CAGGGT-GT-AAAGGATGATGAT
gi|3 : -GGAGC-TTTTCT-AA-C-CCTAGAAGAACT-GATACTT--GCGGAGACCTTGCG---CTG-CTGTCTCCA-CG-CACCCAG-CATATCCAA-GAAAGACAAAACAG-GCTGCAAC--ACATACGAAAGAGTGGGTCATACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--TC--TTAAT-GT-GGAAATG-CTGCACCGGTTATAGGTCAATTGATGAAGAAACTACGCCAGGAC-AACAA--TCACATA-CCTGGGTAGC-A-TTATCAATTC---A-----AT-CAGA--GGGCG-CAC------AAG---A--GGACA-T-CACAGC-AGA--CTTGG-TAAGG--CAGGA-GA-GTATTTAG----A--GAAA-T--TA-AT--AA-A-TCTGGA-GGTC----TCACT-TGTAC-AGCACAG-ACAC--AGCCTGAAGTTATA---AAAGCTGTG---TTGTTTCA--ACCCTC-CTAT-ACGGATCAGAATGCTGGAG--ATTACAGA--G--ATAGATGTTTC--AA-TAACGATCCTTC--ACACAACATACGTCTGCCGATAACTTAGGATATTCTGCC-AGAGAAAAAGTA--CAAC-GA---AG--AAC---TTAT-AAATAGAT--GTAA-GCAAGA------AGACATG-GGTAGCATCATTCCCATCA-AACG--CCGAT-GGAGGATGG-ATGAACAT-ATCA---CGAAAA-AAC--CCA--------GTCAATAACAAGAA----CAGCACTTGCA-CTG-G----ACAA-GAAGGCAAGAGG-AAGAGAGGG-AGA-C----C-AAca
gi|4 : CC-AGTAC-AGCACCG-ACACCAAG-CTGAAACTATA-CCAGCGCTGTG---TTGTCTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGAGGA-TTACAGA--GA--CAGACCTTTCCAAA-TTACGATTCTTCCA----------------CCGAATACATAGGATATTCTGGCCAGAGAAGA--TAACCAA-TGA----GAC--C---TTATTAAATAGATC-AA-T-GCAAGG------AGACATA-GGTA-CCG-CCTCAATTTACAACA--CCGAT-G-A-GATGTTATAGACAT-GTC-CTTCG---A-CCC--CCCCCCCCCCAGTCAATAACAAGAATGTTCAGCGCT-GCAGCTG-GA--CGCAACGA--GCAAGAGG-A-GAGAGGG-AGGCC----C-AAGA-AACAT-AT-GGAGA--AGGAC-GG-T-GAG-A-GC--GAGATAAAAG-CTGTGCAGCAGGACCTGGG-GATCA--CTA------CCAAAGCT-GCCCAGGAT--GGC----AGGAG-GGGAG-GAATTTTGTTTG-C-TGCAACCAA-CACA-----A-CTGGGT-GT-AAAGG--GATGATca
gi|5 : tac--TGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATGTACTCC--TTAAT-GGTGAAAGTGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG--ACTCCGCCA-GACAAACAACTTCACATACCCTGGGTAGC-AGTTATCAATTC---ATCAGCAT-CAGA--GGGCGACAC------AGAAGGA--GGACA-TCCACAGC-AGA--CTTGT-A-AGC--CAGGAGGA-GTATTTAGGAGAA--A-AA-T--TATAT--AACATTCTGGAGGGTC----T-ACA-CTTGT-AGCAGCACACACC-AG-CTGAAGTTATA-CAAAAGCTGTG---TT-TGTCAAGACCCTCACTATAga
gi|6 : caaaaaccatatgcagaaagaagatacgcC--TTAAT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-GACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTCATAA----CAT-CAGA--GGGCGACAC------AAA---GGAGGACA-TCCACAGC-AGA--CTTGG-T-AAGGCCAGGA-GA-GTATTTAG----A--GAAA-T--TA-AT--AACA-TCTGGA-GGTC----T-ACCTTGTAC-AGCACCA-ACACCAAG-CTGAAGTTATA-CAAAAGCTGTG---TTGTTTCA--ACCCTC-CTAT-ACGGATCAGAATGCTGGAAGA-TTACAGA--GA-gtcg
gi|7 : t--CAGGG-GA-GTTTTTAG----A--G-AAAT--GA-AT--AGCA-TATGGA-GTTC----T-ACC-----C-AGTA-------CCAAG-CTGAAACTATATC-AGAGCTGTG---TTGTATCA--ACCCTC-CTATA-TGGATCAGAATCCTGGAGGA-TTACAGA--GACATA--CCTTTCCAAATT-ACGATCCTTCC-ACACAACAGGCTACCGCCGAATACTTAGGATGTTCTTGCTAGAGAAGA--TAACCAA-TGA---AGACAta
gi|8 : c--GCA-CTG-GAGACACAG--AAGGCAAGAGGTACGAGAGGG-AG--CGGACC-AAGA-A-CATCAT-GGAGAAGGA--CAGG-TTGAGAA-GCAAGAGATAAAA--C-CTGAAGCAG--CCTGGGAAGTCATGCTAC-----ACAAAGCTGGCCCAGGATATGGCCAGAAAGAGATGGAG-G-AACTTG-TTG-CTTGT--CCTA-CACACC---ACCCGGGTGGT-AAAGGA-GATGATtgggtaccatcattaccaaacgcc
gi|9 : agccaagatataaaacatatttC--TTAAA-GTGG-AAATGCCTACTTCGGTTA-AGGTCA----ATGAAG-AACTACGCCA-GACAGACAACTTCACATA-CTAAAGT------TTATCCATTg
gi|9 : CC-AGTAC-AGCACCA-ACACCAAG-CTAAAGCTATA-CCATAGCTGTG---TTGTTTCA--AACCTC-CTATA-CGGATCAGAATGCgaagatatacaaagatatcgacaaagattcgaactaaattattatacccagtacagcaccaacaccaagctaaagctataccatagctgtgttgtttcaaacctcctatacggatcagaatgc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTCCACACCAGAACAGAGGAATACAATTATAC
Unaligned ( gi|24 ): ATTAAAGCTTATCCATTAAAGATAAACAAAGT
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 11 1 111 22 222 11 1111 1 111 2222 2222 11 1 11 1 22222 2 1 222222222 111111 222222222 11 222222222 11 11 222 11 11 11 11 11 1 111 11 111 111 2222222 222222 44444444444 11 1 1 0000000000000000000000000000 3333 1111111 222222 1111 111 222222
lowQualScore : 88 0 2 6 6 666 55 00 6 333 33 1111 3 6 999 0000 7 7 4444 33 2 0 33 0 3 3 3 77777 99 6 6 1 6 1 6 6 1 3 6 3 6 0 5 8888 66 111111111 5 77 0 666666 333333333 7 5 77 5 5 33 5 5 88 888 5 5 5 66 2 5 5 333333333 88 4 4 11 11 4 111 1 888 66 5 88 11 6 99 77 8 8 8 44 22 44 5 00 0 3 3 444 88 111 55 444 8 9999999 333333 8 11111111111 8 0 11 8 88 0 6 0 0000000000000000000000000000 9999 6 5 5 5 5 1 7777 5 2 5 7777777 5 5 5 5 222222 5 5 5 5 66 7777 1 000 66 4 66 111111 1 44 7777 3 3 3 3 3 55 3 666 3 4 3 3 6
lowQualScore : .. . . . . ... .. .. . ... .. .... . . ... .... . . .... .. . . .. . . . . ..... .. . . . . . . . . . . . . . . .... .. ......... . .. . ...... ......... . . .. . . .. . . .. ... . . . .. . . . ......... .. . . .. .. . ... . ... .. . .. .. . .. .. . . . .. .. .. . .. . . . ... .. ... .. ... . ....... ...... . ........... . . .. . .. . . . ............................ .... . . . . . . .... . . . ....... . . . . ...... . . . . .. .... . ... .. . .. ...... . .. .... . . . . . .. . ... . . . . .
lowQualScore : 00 0 5 5 5 222 88 77 7 333 33 3333 3 7 000 3333 3 3 3333 88 5 0 88 0 2 2 2 22222 22 7 7 8 7 0 7 7 7 2 7 3 7 1 0 4444 22 999999999 7 99 1 444444 333333333 9 7 99 7 7 88 0 0 44 888 0 0 0 99 5 0 0 555555555 99 0 0 44 33 4 222 1 888 99 0 77 88 7 22 44 0 0 0 66 00 88 0 22 8 8 3 888 22 777 77 000 0 2222222 000000 0 22222222222 0 8 00 0 88 0 5 0 0000000000000000000000000000 2222 7 7 7 7 7 4 7777 0 0 0 5555555 0 0 0 0 555555 0 0 0 0 99 2222 1 333 77 4 11 777777 1 33 7777 3 6 6 6 6 00 6 444 6 3 6 6 4
consensus : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTCAA-C-CCTAGAAGAACTTGATACTT-TGCGGAGACCTTGCG---CTGGCTGTCTCAACGACACACAG-CATATCCAAGAGAGA-AAAACGGCNCTGCAACTAGCA-A-CGAAAG--TGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--CC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAAT-GATGAAGAA-CTACGCCAG-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTC---A----CAT-CAGA--GGGCGACAC------AGA---G--G--GACATCCACAGC-AGA--CTTGG-TA-GG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTC----TA-C-CC-NGTA-C-AGCACCGACACCAAGC-TGAAGCTATA-C-AGAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATGCTGGAGGAT-TACAGA--GAACAGATCTTTCCAAA-T-A-CGATCCTTCCAACACAACATGCNTCTGCCGAANACTTAGGATATTCTGGC-AGAGAAGA--TAACCAACTGA---AGACAAC---TTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTACCAT-ATTCAAATCA-AAC--GCCGAT-GGA-GATGG-ATGAACAT-GTCAC--C--G---A-AACCC---------GTCAATAACAAGAA----CAGCG-C-TG-CA-CTG-GACACA-A-GAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C-GG-TTGAG-A-GC--GAGATAAAAG-C-GTGCAGCAG-ACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGC--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
Reference ( family-4402 ) : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTCAA-C-CCTAGAAGAACTTGATACTT-TGCGGAGACCTTGCG---CTGGCTGTCTCAACGACACACAG-CATATCCAAGAGAGA-AAAACGGCNCTGCAACTAGCA-A-CGAAAG--TGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--CC--TTA-AT-GTGGGAAATGCCTGCTCCGGTTA-AGGTCAAT-GATGAAGAA-CTACGCCAG-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTC---A----CAT-CAGA--GGGCGACAC------AGA---G--G--GACATCCACAGC-AGA--CTTGG-TA-GG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTC----T--N-CC-NGTA-C-AGCACCGACACCAAGC-TGAAGCTATA-C-AGAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATGCTGGAGGAT-TACAGA--GAATAGATCTTTCCAAA-T-A-CGATCCTTCCAACACAACATGCNTCTGCCGAANACTTAGGATATTCTGGC-AGAGAAGA--TAACCAACTGA---AGACAAC---TTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTA-CAT-ATTCAAATCA-AAC--GCCGAT-GGA-GATGG-ATGAACAT-GTCAC--C--G---A-AACCC---------GTCAATAACAAGAA-G--CAGCG-C-TG-CA-CTG-GACACA-A-GAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C-GG-TTGAG-A-GC--GAGATAAAAG-C-GTGCAGCAG-ACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGC--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
gi|1 : AAGGGGGA--CGCTGTGGAGCCTTTTCTCAA-AACCTAGAAGAACTTGATACATATGCGGAGACCTTGCG---CTGGCTGTCTCA-CGACACACAGTCATATCCAAGAGA---AAAACGGCTC-GCAACTAGCA-AACGAAGG--TGGGTC-TACGTTAATCAAGTACCAAGA-GACGGAGACGATG-AA-TC--TTA-ATTGTGGGAAATGC-TGCACCGGTTA--GGTCAAT-GATGAAGAA-ATACGCCAGGACAAACAA--TC-CATA-CCTGGGTAGC-A-TTATCAATTCT--A----CATACAGA--GGG-GACAC------AGA---G--A--GACATC-ACAGC-AGA--CTTGG-TA-GG--CAGGA-GA-GT--TTT---GCA-GAA--TTA-AT--AAAA-TCTGGA-GGTC----T--T-CC-TGTA-C-AGCAA-GACAC--AGC-TGAAGTTAT--C-AAAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATCCTGGA--ATCTACAGA--GAATAGGTTTTTCCAAA-T-A-CGATCCTTCCAGCACAACATACGTCTGCCGATAACTTAGGATATTCTTGC-AGAAAAG---TAACCAACTGA---AGACAAC---TTAT-AAATAGATT-GT-A-GCAAGA------AGACATG-GGTA-CAT-ATATAAATCA-AACGGGCCGGTAGGA-GATGG-ATGAACATAGTTATG-CAAA---A-AAACC---------GTCCATAACAAGAA-G--CAG-A-C--G-CA-CTG-GACACA-G-AAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C--G-TTGAG-ATGC--GAGATAAGAA-C-ATA-AGCAA-A-CTGGGGT-CCAGT--TA------ACAA--CTGGCCCAGGATA-GGC----AGGA--TGGAG-GAAACTTG-TTG-C-TGT--CCTA-ACCACC---A-CCGGGT-GT-AAAGGATGATGAT
gi|10 : aacagaag-A-GAAGGCAAGAGG-AAGAGAGGG-AGG-C----C-AAGA-A-CATCAT-GGAGGAGGG--C-GG-TTGAG-A-AC--AAGATAAAAG-CCGTGCAGCAG-ACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGAATA-TGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
gi|11 : cCCA---------GTCAATAAAAAGAA----CAGCA-C-TG-CA-CTG-GACCCC-A-GGAGGCAAGAGG-AAGAGAAGG-GG--C----C-AAGA-A-CATCAT-GGAG---GA--C-GG-TTGAG-A-AT--GAGATAAAAGCC-ATGCAGCAG-A---GGAGA-TCA-T--TAACTGTTACAAAGCTGGCCCAGGATA-GGC----AGGAG-Tg
gi|12 : cTTCACGTA-CATGGGTAGC-A-CCATC---CC---A----TAT-CTGA--GAGCAACATCGAAAAAGA---G--G--AAT-----CAGCAAGA--CTCGGCTT-GG--CAGTC-CA-GGC-TTT---CAA-GAA-ACT--ATCAAACG-TCTGGA-AGTCAACGT--C-CC-T----T-AACACCAAGACAAACC-TGAA
gi|13 : A-A-CATCAT-GGAGA--AGGAC-AG-TTGAG-A-GC--GAGATAAAAACC-ATGAAGCAG-ACCTGGGG--TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACC---A-CCGGGT-GT-AAAGGATGATGAT
gi|14 : TTCACATA-CCTGGGTAG-----TATCA--TC---A----CAT-CAGA--CGGCGGCAC------AGA---G--GAGGACATCCACAGC-AGA--CATGG-TA-AGGTCAAGA-GA-GTA-TTT---AGA-GAA-ATTA-AT-----G-TGTGGA-GGTC----TA-C-CC-AGTA-C-AGCACCAACgt
gi|15 : ---------GTCAATAACAAGAA----CATCG-C-TG-CA-CTG-GACACT-T-GAAGGCAAGAGG-AAGTGAGGGAAG--C----C-AAGA-A-CATCATGGGACA--GGA-C-GG-TTGAG-A-AC--GAAATAAAAG-C-
gi|16 : cccccaaATAAAAG-CTGTGCAGCAG-TCCTGGGGA-T-A-T--TA-------CAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACCGGAA-CC-GGT-GTAAAAGGACtgt
gi|17 : CAGCAG-ACCTGGGGA-TCA-C--TA------ACGAAGCT--------------C----AGGAG-TGGAG-GAAAATTG-TTG-C-TGC--CCTT-CACACC---A-CTGGGT-GT-AAAGGAAAATAATtg
gi|18 : C-AGAGAAAG--TAACCAAC-GA---AGA--AC---TTAT-TGATAGAT--GT-AAGCAAGA------AGACACG-GGTACCATAATT---ACCA-AAC--GCCGAT-GGA-Ggat
gi|19 : cATA-GGC----AGGAG-CGAAG-G-AACTTG-TTGCC-TGC--CCAA-CCCACC---A-C--GGT-GT-AAA--ACGGTGA
gi|2 : -GGAGCTTTTTTTTAAAC-CCTAGAAATATCT--TACTT-TG-GCCGACCTTTCGATCCTGG--GTCTCAAACACACACAG-CATATCCAA-AGAGA-CAAACA-TACTGCACATAGCA-A----GAG--TGA-TC-TACGT--AC-AAGT--CAAGAAT-----GACGAT--A--CCAACTATAT-GTG--AAATGTCT-CTTCGGT-A-ACGTCAA---ACGAA--A-CTACGCCAG-ACAAAATACT-----TA-CCTGTGTAGTAA-TTAT---TTC---A----AA--CAGATGGGATAACAC------TGA----------ACATTCAC-GC-AGATTCTT---TA-AG--CA-GA-GATATACTTC---AAATGAATACTA-G---AACA-TATG---ATTC----TA-C-CC-AGTA-CGAGTA---ACACATAGC-TGAAACTTAA-C-AGAGTTG-GACTTTGTTTCA--GCTC-A-CTATACC---------TGC------AT-T-CAGATCGAA---ATCTTTCCAAT-T-A-CTATTCTTCCTATACAACATGCCTCT--CGAA-ACTT--GAT-TTCTGG--------------ACTAAGTGATATAAACAACGAGCTAT-AATTAAATTAAT-A-GAAACAACCGTTAGACATGAGGTACCAT-CT----ATCA-A------CTAT-GG----TGG-AT-AACAT-GT--C--C--G---ACGACCCACTCACACAGTCAAT-ACAAGAA-------CGCC-TATCA-CTGTGCCCCC-A-GAAGACAAGAGG--GGAGGACG-AG--C----CAAAGATA-CACAAT-GAGCA--GA--C-GGATTGAG-A-AC--GA-ATAAAAG-G-CTGC-CCA----CTGGTAT-TCA-T--TAT-----AGAAACCTG-----------AGC----AGAAA-CAGAGTGAAATTTG-TT----TTC--TATA-CATCCC---A-C--GGT-GT-AAAGGgctgagg
gi|20 : AAGGGGGATCCGCTG-GAA-CCTTTTCTCAA-C-CCTAGAAGATCTTGAtattatatat
gi|21 : acagaaaactctcc-GGC----AAGAG-TGGAG-GAAACTGT-TTG-C-TGA--CCTATCACACC---A--CGGG--GT-AAAGGATGAT
gi|22 : gtAG-TGAAA-TAAACATG-TTG-C-TGC--CCTA-CACACA---A-CAGGGT-GT-AAAGGATGATGAT
gi|3 : -GGAGC-TTTTCT-AA-C-CCTAGAAGAACT-GATACTT--GCGGAGACCTTGCG---CTG-CTGTCTCCACG-CACCCAG-CATATCCAAGAAAGACAAAACAG-GCTGCAAC--ACATA-CGAAAGAGTGGGTCATACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--TC--TTA-AT-GTGG-AAATGC-TGCACCGGTTATAGGTCAATTGATGAAGAAACTACGCCAGGACAA-CAA--TCACATA-CCTGGGTAGC-A-TTATCAATTC---A-----AT-CAGA--GGGCG-CAC------AAG---A--G--GACATC-ACAGC-AGA--CTTGG-TAAGG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AA-A-TCTGGA-GGTC----T--CACT-TGTA-C-AGCACAGACAC--AGCCTGAAGTTATA---AAAGCTGTG---TTGTTTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGAG-AT-TACAGA--GA-TAGATGTTTC--AA-T-AACGATCCTTC--ACACAACATACGTCTGCCGATAACTTAGGATATTCTGCC-AGAGAAAAAGTA--CAAC-GA---AG--AAC---TTAT-AAATAGAT--GTAA-GCAAGA------AGACATG-GGTAGCATCATTCCCATCA-AAC--GCCGAT-GGAGGATGG-ATGAACAT-ATCA---C--GAAAA-AACCCA--------GTCAATAACAAGAA----CAGCA-CTTG-CA-CTG-G--ACA-A-GAAGGCAAGAGG-AAGAGAGGG-AGA-C----C-AAca
gi|4 : -CC-AGTA-C-AGCACCGACACCAAGC-TGAAACTATA-CCAGCGCTGTG---TTGTCTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGAGGAT-TACAGA--GA-CAGACCTTTCCAAA-TTA-CGATTCTTCCA----------------CCGAATACATAGGATATTCTGGCCAGAGAAGA--TAACCAA-TGA----GAC--C---TTATTAAATAGATC-AA-T-GCAAGG------AGACATA-GGTA-CCG-CCTCAATTTACAAC--ACCGAT-G-A-GATGTTATAGACAT-GTC-CTTC--G---A-CCCCCCCCCCCCCAGTCAATAACAAGAATGTTCAGCG-C-TG-CAGCTG-GACGCA-ACGA--GCAAGAGG-A-GAGAGGG-AGGCC----C-AAGA-AACAT-AT-GGAGA--AGGAC-GG-T-GAG-A-GC--GAGATAAAAG-CTGTGCAGCAGGACCTGGGGA-TCA-C--TA------CCAAAGCT-GCCCAGGAT--GGC----AGGAG-GGGAG-GAATTTTGTTTG-C-TGCAACCAA-CACA-----A-CTGGGT-GT-AAAGG--GATGATca
gi|5 : tac--TGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATGTACTCC--TTA-AT-GGTGAAAGTGCCTGCTCCGGTTA-AGGTCAAT-GATGAAG-A-CTCCGCCAG-ACAAACAACTTCACATACCCTGGGTAGC-AGTTATCAATTC---ATCAGCAT-CAGA--GGGCGACAC------AGAAGGA--G--GACATCCACAGC-AGA--CTTGT-AA-GC--CAGGAGGA-GTA-TTTAGGAGA-AAA-ATTATAT--AACATTCTGGAGGGTC----TACA-CT-TGTAGC-AGCAC--ACACC-AGC-TGAAGTTATA-CAAAAGCTGTG---TT-TGTCAAGACCCTCACTATAga
gi|6 : caaaaaccatatgcagaaagaagatacgcC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAAT-GATGAAGAA-CTACGCCAG-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTCATAA----CAT-CAGA--GGGCGACAC------AAA---GGAG--GACATCCACAGC-AGA--CTTGG-TA-AGGCCAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTC----T--A-CCTTGTA-C-AGCACCAACACCAAGC-TGAAGTTATA-CAAAAGCTGTG---TTGTTTCA--ACCCTC-CTAT-ACGGATCAGAATGCTGGAAGAT-TACAGA--GAgtcg
gi|7 : t--CAGGG-GA-GTT-TTT---AGA-GAA-ATGA-AT--AGCA-TATGGA-GTTC----T--A-CC------C-AG------TACCAAGC-TGAAACTATATC-AGAGCTGTG---TTGTATCA--ACCCTC-CTAT-ATGGATCAGAATCCTGGAGGAT-TACAGA--G-ACATACCTTTCCAAATT-A-CGATCCTTCC-ACACAACAGGCTACCGCCGAATACTTAGGATGTTCTTGCTAGAGAAGA--TAACCAA-TGA---AGACAta
gi|8 : c-TG-CA-CTG-GAGACACA-GAAGGCAAGAGGTACGAGAGGG-AG--CGGACC-AAGA-A-CATCAT-GGAGAAGGA--CAGG-TTGAGAA-GCAAGAGATAAAA--C-CTGAAGCAG--CCTGGGAAGTCA-TGCTAC-----ACAAAGCTGGCCCAGGATATGGCCAGAAAGAGATGGAG-G-AACTTG-TTG-CTTGT--CCTA-CACACC---ACCCGGGTGGT-AAAGGA-GATGATtgggtaccatcattaccaaacgcc
gi|9 : agccaagatataaaacatattC--TTA-AA-GTGG-AAATGCCTACTTCGGTTA-AGGTCAAT-GA---AGAA-CTACGCCAG-ACAGACAACTTCACATA-CTAAAGT------TTATCCATTg
gi|9 : -CC-AGTA-C-AGCACCAACACCAAGC-TAAAGCTATA-CCATAGCTGTG---TTGTTTCA--AACCTC-CTATA-CGGATCAGAATGCgaagatatacaaagatatcgacaaagattcgaactaaattattatacccagtacagcaccaacaccaagctaaagctataccatagctgtgttgtttcaaacctcctatacggatcagaatgc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTCCACACCAGAACAGAGGAATACAATTATAC
Unaligned ( gi|24 ): ATTAAAGCTTATCCATTAAAGATAAACAAAGT
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 11 1 111 22 222 1111 1 111 2222 333333333 1 11 1 22222 1 222222222 111111 222222222 11 11 11 222 11 1 111 1 11 11 1 111 11 111 111 2222222 222222 4444444 11 1 1 0000000000000000000000000000 2222 1111111 222222 1111 111 222222
lowQualScore : 88 0 2 6 6 666 55 00 6 333 6 6 1111 3 6 999 0000 7 7 666666666 2 0 33 0 3 3 3 77777 99 6 3 77 1 1 6 6 1 99 6 6 6 0 5 8888 66 111111111 5 77 0 666666 333333333 33 5 77 666 33 5 5 88 888 5 5 5 66 2 5 5 99 1 44 4 11 11 4 111 1 888 66 5 77 3 6 99 444 8 6 44 22 44 5 00 0 3 3 444 88 111 55 444 8 9999999 333333 8 5 0000000 8 0 11 8 88 0 6 0 0000000000000000000000000000 0000 6 5 5 5 5 1 7777 5 2 5 7777777 5 5 5 5 222222 5 5 5 5 66 7777 1 000 66 4 66 111111 1 44 7777 3 3 3 3 3 55 3 666 3 4 3 3 6
lowQualScore : .. . . . . ... .. .. . ... . . .... . . ... .... . . ......... . . .. . . . . ..... .. . . .. . . . . . .. . . . . . .... .. ......... . .. . ...... ......... .. . .. ... .. . . .. ... . . . .. . . . .. . .. . .. .. . ... . ... .. . .. . . .. ... . . .. .. .. . .. . . . ... .. ... .. ... . ....... ...... . . ....... . . .. . .. . . . ............................ .... . . . . . . .... . . . ....... . . . . ...... . . . . .. .... . ... .. . .. ...... . .. .... . . . . . .. . ... . . . . .
lowQualScore : 00 0 5 5 5 222 88 77 7 333 7 7 3333 3 7 000 3333 3 3 000000000 5 0 88 0 2 2 2 22222 22 7 3 77 0 0 7 7 7 88 7 7 7 1 0 4444 22 999999999 7 99 1 444444 333333333 77 7 99 111 88 0 0 44 888 0 0 0 99 5 0 0 55 0 88 0 44 33 4 222 1 888 99 0 88 5 7 22 555 0 0 66 00 88 0 22 8 8 3 888 22 777 77 000 0 2222222 000000 0 0 6666666 0 8 00 0 88 0 5 0 0000000000000000000000000000 8888 3 7 7 7 7 4 7777 0 0 0 5555555 0 0 0 0 555555 0 0 0 0 99 2222 1 333 77 4 11 777777 1 33 7777 3 6 6 6 6 00 6 444 6 3 6 6 4
consensus : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTCAA-C-CCTAGAAGAACTTGATACTT-TGCGGAGACCTTGCG---CTGGCTGTCTCAACGACACACAG-CATATCCAAGAGAGA-AAAACGGCNCTGCAACTAGCA-A-CGAA--AGTGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--CC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-G-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTC---A----CAT-CAGA--GGGCGACAC------AGA---G--G--GACATCCACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTCTAC--CCNGTA-C-AGCACCGACACCAAG-CTGAAGCTATA-C-AGAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATGCTGGAGGAT-TACAGA--GAACAGATCTTTCCAAA-T-ACGATCCTTCCAACACAACATGCNTCTGCCGAANACTTAGGATATTCTGGC-AGAGAAGA--TAACCAACTGA---AGACAAC---TTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTACCAT-ATTCAAATCA-AAC--GCCGAT-GGA-GATGG-ATGAACAT-GTCAC--C--G---A-AACCC---------GTCAATAACAAGAA----CAGCGC-TG-CA-CTG-GACACA-A-GAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C-GG-TTGAG-A-GC--GAGATAAAAG-C-GTGCAGCAG-ACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGC--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
Reference ( family-4402 ) : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTCAA-C-CCTAGAAGAACTTGATACTT-TGCGGAGACCTTGCG---CTGGCTGTCTCAACGACACACAG-CATATCCAAGAGAGA-AAAACGGCNCTGCAACTAGCA-A-CGAA--AGTGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--CC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-G-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTC---A----CAT-CAGA--GGGCGACAC------AGA---G--G--GACATCCACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTCTAC--CCNGTA-C-AGCACCGACACCAAG-CTGAAGCTATA-C-AGAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATGCTGGAGGAT-TACAGA--GAACAGATCTTTCCAAA-T-ACGATCCTTCCAACACAACATGCNTCTGCCGAANACTTAGGATATTCTGGC-AGAGAAGA--TAACCAACTGA---AGACAAC---TTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTACCAT-ATTCAAATCA-AAC--GCCGAT-GGA-GATGG-ATGAACAT-GTCAC--C--G---A-AACCC---------GTCAATAACAAGAA----CAGCGC-TG-CA-CTG-GACACA-A-GAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C-GG-TTGAG-A-GC--GAGATAAAAG-C-GTGCAGCAG-ACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGC--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
gi|1 : AAGGGGGA--CGCTGTGGAGCCTTTTCTCAA-AACCTAGAAGAACTTGATACATATGCGGAGACCTTGCG---CTGGCTGTCTCA-CGACACACAGTCATATCCAAGAGA---AAAACGGCTC-GCAACTAGCA-AACGAA--GGTGGGTC-TACGTTAATCAAGTACCAAGA-GACGGAGACGATG-AA-TC--TTA-ATTGTGGGAAATGC-TGCACCGGTTA--GGTCAA-TGATGAAG-AAATACGCCA-GGACAAACAA--TC-CATA-CCTGGGTAGC-A-TTATCAATTCT--A----CATACAGA--GGG-GACAC------AGA---G--A--GACATC-ACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GT--TTT---GCA-GAA--TTA-AT--AAAA-TCTGGA-GGTCT-T--CCTGTA-C-AGCAA-GACAC--AG-CTGAAGTTAT--C-AAAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATCCTGGA--ATCTACAGA--GAATAGGTTTTTCCAAA-T-ACGATCCTTCCAGCACAACATACGTCTGCCGATAACTTAGGATATTCTTGC-AGAAAAG---TAACCAACTGA---AGACAAC---TTAT-AAATAGATT-GT-A-GCAAGA------AGACATG-GGTA-CAT-ATATAAATCA-AACGGGCCGGTAGGA-GATGG-ATGAACATAGTTATG-CAAA---A-AAACC---------GTCCATAACAAGAAG---CAG-AC--G-CA-CTG-GACACA-G-AAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C--G-TTGAG-ATGC--GAGATAAGAA-C-ATA-AGCAA-A-CTGGGGT-CCAGT--TA------ACAA--CTGGCCCAGGATA-GGC----AGGA--TGGAG-GAAACTTG-TTG-C-TGT--CCTA-ACCACC---A-CCGGGT-GT-AAAGGATGATGAT
gi|10 : aacagaag-A-GAAGGCAAGAGG-AAGAGAGGG-AGG-C----C-AAGA-A-CATCAT-GGAGGAGGG--C-GG-TTGAG-A-AC--AAGATAAAAG-CCGTGCAGCAG-ACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGAATA-TGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
gi|11 : cCCA---------GTCAATAAAAAGAA----CAGCAC-TG-CA-CTG-GACCCC-A-GGAGGCAAGAGG-AAGAGAAGG-GG--C----C-AAGA-A-CATCAT-GGAG---GA--C-GG-TTGAG-A-AT--GAGATAAAAGCC-ATGCAGCAG-A---GGAGA-TCA-T--TAACTGTTACAAAGCTGGCCCAGGATA-GGC----AGGAG-Tg
gi|12 : cTTCACGTA-CATGGGTAGC-A-CCATC---CC---A----TAT-CTGA--GAGCAACATCGAAAAAGA---G--G--AAT-----CAGCAAGA--CTCGGCT-TGG--CAGTC-CA-GGC-TTT---CAA-GAA-ACT--ATCAAACG-TCTGGA-AGTCAACGTCCCTT----AACACCAAGACAAAC-CTGAA
gi|13 : A-A-CATCAT-GGAGA--AGGAC-AG-TTGAG-A-GC--GAGATAAAAACC-ATGAAGCAG-ACCTGGGG--TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACC---A-CCGGGT-GT-AAAGGATGATGAT
gi|14 : TTCACATA-CCTGGGTAG-----TATCA--TC---A----CAT-CAGA--CGGCGGCAC------AGA---G--GAGGACATCCACAGC-AGA--CATGG-T-AAGGTCAAGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--G----TGTGGA-GGTCTAC--CCAGTA-C-AGCACCAACgt
gi|15 : ---------GTCAATAACAAGAA----CATCGC-TG-CA-CTG-GACACT-T-GAAGGCAAGAGG-AAGTGAGGGAAG--C----C-AAGA-A-CATCATGGGACA--GGA-C-GG-TTGAG-A-AC--GAAATAAAAG-C-
gi|16 : cccccaaATAAAAG-CTGTGCAGCAG-TCCTGGGGA-T-A-T--TA-------CAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACCGGAA-CC-GGT-GTAAAAGGACtgt
gi|17 : CAGCAG-ACCTGGGGA-TCA-C--TA------ACGAAGCT--------------C----AGGAG-TGGAG-GAAAATTG-TTG-C-TGC--CCTT-CACACC---A-CTGGGT-GT-AAAGGAAAATAATtg
gi|18 : C-AGAGAAAG--TAACCAAC-GA---AGA--AC---TTAT-TGATAGAT--GT-AAGCAAGA------AGACACG-GGTACCATAATT---ACCA-AAC--GCCGAT-GGA-Ggat
gi|19 : cATA-GGC----AGGAG-CGAAG-G-AACTTG-TTGCC-TGC--CCAA-CCCACC---A-C--GGT-GT-AAA--ACGGTGA
gi|2 : -GGAGCTTTTTTTTAAAC-CCTAGAAATATCT--TACTT-TG-GCCGACCTTTCGATCCTGG--GTCTCAAACACACACAG-CATATCCAA-AGAGA-CAAACA-TACTGCACATAGCA-A----G--AGTGA-TC-TACGT--AC-AAGT--CAAGAAT-----GACGAT--A--CCAACTATAT-GTG--AAATGTCT-CTTCGGT-A-ACGTCAA---ACGAA---ACTACGCCA-G-ACAAAATACT-----TA-CCTGTGTAGTAA-TTAT---TTC---A----AA--CAGATGGGATAACAC------TGA----------ACATTCAC-GC-AGATTCTT---T-AAG--CA-GA-GATATACTTC---AAATGAATACTA-G---AACA-TATG---ATTCTAC--CCAGTA-CGAGTA---ACACATAG-CTGAAACTTAA-C-AGAGTTG-GACTTTGTTTCA--GCTC-A-CTATACC---------TGC------AT-T-CAGATCGAA---ATCTTTCCAAT-T-ACTATTCTTCCTATACAACATGCCTCT--CGAA-ACTT--GAT-TTCTGG--------------ACTAAGTGATATAAACAACGAGCTAT-AATTAAATTAAT-A-GAAACAACCGTTAGACATGAGGTACCAT-CT----ATCA-A------CTAT-GG----TGG-AT-AACAT-GT--C--C--G---ACGACCCACTCACACAGTCAAT-ACAAGAA----C-GC-C-TATCA-CTGTGCCCCC-A-GAAGACAAGAGG--GGAGGACG-AG--C----CAAAGATA-CACAAT-GAGCA--GA--C-GGATTGAG-A-AC--GA-ATAAAAG-G-CTGC-CCA----CTGGTAT-TCA-T--TAT-----AGAAACCTG-----------AGC----AGAAA-CAGAGTGAAATTTG-TT----TTC--TATA-CATCCC---A-C--GGT-GT-AAAGGgctgagg
gi|20 : AAGGGGGATCCGCTG-GAA-CCTTTTCTCAA-C-CCTAGAAGATCTTGAtattatatat
gi|21 : acagaaaactctcc-GGC----AAGAG-TGGAG-GAAACTGT-TTG-C-TGA--CCTATCACACC---A--CGGG--GT-AAAGGATGAT
gi|22 : gtAG-TGAAA-TAAACATG-TTG-C-TGC--CCTA-CACACA---A-CAGGGT-GT-AAAGGATGATGAT
gi|3 : -GGAGC-TTTTCT-AA-C-CCTAGAAGAACT-GATACTT--GCGGAGACCTTGCG---CT-GCTGTCTCCACG-CACCCAG-CATATCCAAGAAAGACAAAACAG-GCTGCAAC--ACATA-CGAAAGAGTGGGTCATACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--TC--TTA-AT-GTGG-AAATG-CTGCACCGGTTATAGGTCAATTGATGAAGAAACTACGCCAGG-AC-AACAA--TCACATA-CCTGGGTAGC-A-TTATCAATTC---A-----AT-CAGA--GGGCG-CAC------AAG---A--G--GACAT-CACAGC-AGA--CTTGG-TAAGG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AA-A-TCTGGA-GGTCTCA--CTTGTA-C-AGCACAGACAC--AGCCTGAAGTTATA---AAAGCTGTG---TTGTTTCA--ACCCTC-CTAT-ACGGATCAGAATGCTGGA-GAT-TACAGA--G-ATAGATGTTTC--AA-TAACGATCCTTC--ACACAACATACGTCTGCCGATAACTTAGGATATTCTGCC-AGAGAAAAAGTA--CAAC-GA---AG--AAC---TTAT-AAATAGAT--GTAA-GCAAGA------AGACATG-GGTAGCATCATTCCCATCA-AAC--GCCGAT-GGAGGATGG-ATGAACAT-ATCA---C--GAAAA-AACCCA--------GTCAATAACAAGAA----CAGCACTTG-CA-CTG-G--ACA-A-GAAGGCAAGAGG-AAGAGAGGG-AGA-C----C-AAca
gi|4 : TAC--CCAGTA-C-AGCACCGACACCAAG-CTGAAACTATA-CCAGCGCTGTG---TTGTCTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGAGGAT-TACAGA--GA-CAGACCTTTCCAAA-TTACGATTCTTCCA----------------CCGAATACATAGGATATTCTGGCCAGAGAAGA--TAACCAA-TGA----GAC--C---TTATTAAATAGATC-AA-T-GCAAGG------AGACATA-GGTACCGC--CTCAATTTACAAC--ACCGAT-G-A-GATGTTATAGACAT-GTC-CTTC--G---A-CCCCCCCCCCCCCAGTCAATAACAAGAATGTTCAGCGC-TG-CAGCTG-GACGCA-ACGA--GCAAGAGG-A-GAGAGGG-AGGCC----C-AAGA-AACAT-AT-GGAGA--AGGAC-GG-T-GAG-A-GC--GAGATAAAAG-CTGTGCAGCAGGACCTGGGGA-TCA-C--TA------CCAAAGCT-GCCCAGGAT--GGC----AGGAG-GGGAG-GAATTTTGTTTG-C-TGCAACCAA-CACA-----A-CTGGGT-GT-AAAGG--GATGATca
gi|5 : TGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATGTACTCC--TTA-ATGGTGA-AAGTGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG--ACTCCGCCA-G-ACAAACAACTTCACATACCCTGGGTAGC-AGTTATCAATTC---ATCAGCAT-CAGA--GGGCGACAC------AGAAGGA--G--GACATCCACAGC-AGA--CTTGT-A-AGC--CAGGAGGA-GTA-TTTAGGAGA-AAA-ATTATAT--AACATTCTGGAGGGTCTACA-CTTGTAGC-AGCAC--ACACC-AG-CTGAAGTTATA-CAAAAGCTGTG---TT-TGTCAAGACCCTCACTATAga
gi|6 : caaaaaccatatgcagaaagaagatacgcC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-G-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTCATAA----CAT-CAGA--GGGCGACAC------AAA---GGAG--GACATCCACAGC-AGA--CTTGG-T-AAGGCCAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTCTAC--CTTGTA-C-AGCACCAACACCAAG-CTGAAGTTATA-CAAAAGCTGTG---TTGTTTCA--ACCCTC-CTAT-ACGGATCAGAATGCTGGAAGAT-TACAGA--GAgtcg
gi|7 : t--CAGGG-GA-GTT-TTT---AGA-GAA-ATGA-AT--AGCA-TATGGA-GTTCTAC--CCAGT-------------ACCAAG-CTGAAACTATATC-AGAGCTGTG---TTGTATCA--ACCCTC-CTAT-ATGGATCAGAATCCTGGAGGAT-TACAGA--G-ACATACCTTTCCAAATT-ACGATCCTTCC-ACACAACAGGCTACCGCCGAATACTTAGGATGTTCTTGCTAGAGAAGA--TAACCAA-TGA---AGACAta
gi|8 : c-TG-CA-CTG-GAGACACA-GAAGGCAAGAGGTACGAGAGGG-AG--CGGACC-AAGA-A-CATCAT-GGAGAAGGA--CAGG-TTGAGAA-GCAAGAGATAAAA--C-CTGAAGCAG--CCTGGGAAGTCA-TGCTAC-----ACAAAGCTGGCCCAGGATATGGCCAGAAAGAGATGGAG-G-AACTTG-TTG-CTTGT--CCTA-CACACC---ACCCGGGTGGT-AAAGGA-GATGATtgggtaccatcattaccaaacgcc
gi|9 : agccaagatataaaacatattC--TTA-AA-GTGG-AAATGCCTACTTCGGTTA-AGGTCAA-TGA---AG-AACTACGCCA-G-ACAGACAACTTCACATA-CTAAAGT------TTATCCATTg
gi|9 : TAC--CCAGTA-C-AGCACCAACACCAAG-CTAAAGCTATA-CCATAGCTGTG---TTGTTTCA--AACCTC-CTATA-CGGATCAGAATGCgaagatatacaaagatatcgacaaagattcgaactaaattattatacccagtacagcaccaacaccaagctaaagctataccatagctgtgttgtttcaaacctcctatacggatcagaatgc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTCCACACCAGAACAGAGGAATACAATTATAC
Unaligned ( gi|24 ): ATTAAAGCTTATCCATTAAAGATAAACAAAGT
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 11 1 111 22 222 1111 1 111 2222 333333333 1 11 1 22222 1 222222222 111111 222222222 11 11 11 222 11 1 111 1 11 11 1 111 11 111 111 2222222 222222 4444444 11 1 1 0000000000000000000000000000 2222 1111111 222222 1111 111 222222
lowQualScore : 88 0 2 6 6 666 55 00 6 333 6 6 1111 3 6 999 0000 7 7 666666666 2 0 33 0 3 3 3 77777 99 6 3 77 1 1 6 6 1 99 6 6 6 0 5 8888 66 111111111 5 77 0 666666 333333333 33 5 77 666 33 5 5 88 888 5 5 5 66 2 5 5 99 1 44 4 11 11 4 111 1 888 66 5 77 3 6 99 444 8 6 44 22 44 5 00 0 3 3 444 88 111 55 444 8 9999999 333333 8 5 0000000 8 0 11 8 88 0 6 0 0000000000000000000000000000 0000 6 5 5 5 5 1 7777 5 2 5 7777777 5 5 5 5 222222 5 5 5 5 66 7777 1 000 66 4 66 111111 1 44 7777 3 3 3 3 3 55 3 666 3 4 3 3 6
lowQualScore : .. . . . . ... .. .. . ... . . .... . . ... .... . . ......... . . .. . . . . ..... .. . . .. . . . . . .. . . . . . .... .. ......... . .. . ...... ......... .. . .. ... .. . . .. ... . . . .. . . . .. . .. . .. .. . ... . ... .. . .. . . .. ... . . .. .. .. . .. . . . ... .. ... .. ... . ....... ...... . . ....... . . .. . .. . . . ............................ .... . . . . . . .... . . . ....... . . . . ...... . . . . .. .... . ... .. . .. ...... . .. .... . . . . . .. . ... . . . . .
lowQualScore : 00 0 5 5 5 222 88 77 7 333 7 7 3333 3 7 000 3333 3 3 000000000 5 0 88 0 2 2 2 22222 22 7 3 77 0 0 7 7 7 88 7 7 7 1 0 4444 22 999999999 7 99 1 444444 333333333 77 7 99 111 88 0 0 44 888 0 0 0 99 5 0 0 55 0 88 0 44 33 4 222 1 888 99 0 88 5 7 22 555 0 0 66 00 88 0 22 8 8 3 888 22 777 77 000 0 2222222 000000 0 0 6666666 0 8 00 0 88 0 5 0 0000000000000000000000000000 8888 3 7 7 7 7 4 7777 0 0 0 5555555 0 0 0 0 555555 0 0 0 0 99 2222 1 333 77 4 11 777777 1 33 7777 3 6 6 6 6 00 6 444 6 3 6 6 4
consensus : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTCAA-C-CCTAGAAGAACTTGATACTT-TGCGGAGACCTTGCG---CTGGCTGTCTCAACGACACACAG-CATATCCAAGAGAGA-AAAACGGCNCTGCAACTAGCA-A-CGAA--AGTGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--CC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-G-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTC---A----CAT-CAGA--GGGCGACAC------AGA---G--G--GACATCCACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTCTAC--CCNGTA-C-AGCACCGACACCAAG-CTGAAGCTATA-C-AGAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATGCTGGAGGAT-TACAGA--GAACAGATCTTTCCAAA-T-ACGATCCTTCCAACACAACATGCNTCTGCCGAANACTTAGGATATTCTGGC-AGAGAAGA--TAACCAACTGA---AGACAAC---TTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTACCAT-ATTCAAATCA-AAC--GCCGAT-GGA-GATGG-ATGAACAT-GTCAC--C--G---A-AACCC---------GTCAATAACAAGAA----CAGCGC-TG-CA-CTG-GACACA-A-GAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C-GG-TTGAG-A-GC--GAGATAAAAG-C-GTGCAGCAG-ACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGC--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
Reference ( family-4402 ) : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTCAA-C-CCTAGAAGAACTTGATACTT-TGCGGAGACCTTGCG---CTGGCTGTCTCAACGACACACAG-CATATCCAAGAGAGA-AAAACGGCNCTGCAACTAGCA-A-CGAA--AGTGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--CC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-G-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTC---A----CAT-CAGA--GGGCGACAC------AGA---G--G--GACATCCACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTCTAC--CCNGTA-C-AGCACCGACACCAAG-CTGAAGCTATA-C-AGAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATGCTGGAGGAT-TACAGA--GAACAGATCTTTCCAAA-T-ACGATCCTTCCAACACAACATGCNTCTGCCGAANACTTAGGATATTCTGGC-AGAGAAGA--TAACCAACTGA---AGACAAC---TTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTACCAT-ATTCAAATCA-AAC--GCCGAT-GGA-GATGG-ATGAACAT-GTCAC--C--G---A-AACCC---------GTCAATAACAAGAA----CAGCGC-TG-CA-CTG-GACACA-A-GAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C-GG-TTGAG-A-GC--GAGATAAAAG-C-GTGCAGCAG-ACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGC--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
gi|1 : AAGGGGGA--CGCTGTGGAGCCTTTTCTCAA-AACCTAGAAGAACTTGATACATATGCGGAGACCTTGCG---CTGGCTGTCTCA-CGACACACAGTCATATCCAAGAGA---AAAACGGCTC-GCAACTAGCA-AACGAA--GGTGGGTC-TACGTTAATCAAGTACCAAGA-GACGGAGACGATG-AA-TC--TTA-ATTGTGGGAAATGC-TGCACCGGTTA--GGTCAA-TGATGAAG-AAATACGCCA-GGACAAACAA--TC-CATA-CCTGGGTAGC-A-TTATCAATTCT--A----CATACAGA--GGG-GACAC------AGA---G--A--GACATC-ACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GT--TTT---GCA-GAA--TTA-AT--AAAA-TCTGGA-GGTCT-T--CCTGTA-C-AGCAA-GACAC--AG-CTGAAGTTAT--C-AAAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATCCTGGA--ATCTACAGA--GAATAGGTTTTTCCAAA-T-ACGATCCTTCCAGCACAACATACGTCTGCCGATAACTTAGGATATTCTTGC-AGAAAAG---TAACCAACTGA---AGACAAC---TTAT-AAATAGATT-GT-A-GCAAGA------AGACATG-GGTA-CAT-ATATAAATCA-AACGGGCCGGTAGGA-GATGG-ATGAACATAGTTATG-CAAA---A-AAACC---------GTCCATAACAAGAAG---CAG-AC--G-CA-CTG-GACACA-G-AAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C--G-TTGAG-ATGC--GAGATAAGAA-C-ATA-AGCAA-A-CTGGGGT-CCAGT--TA------ACAA--CTGGCCCAGGATA-GGC----AGGA--TGGAG-GAAACTTG-TTG-C-TGT--CCTA-ACCACC---A-CCGGGT-GT-AAAGGATGATGAT
gi|10 : aacagaag-A-GAAGGCAAGAGG-AAGAGAGGG-AGG-C----C-AAGA-A-CATCAT-GGAGGAGGG--C-GG-TTGAG-A-AC--AAGATAAAAG-CCGTGCAGCAG-ACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGAATA-TGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
gi|11 : cCCA---------GTCAATAAAAAGAA----CAGCAC-TG-CA-CTG-GACCCC-A-GGAGGCAAGAGG-AAGAGAAGG-GG--C----C-AAGA-A-CATCAT-GGAG---GA--C-GG-TTGAG-A-AT--GAGATAAAAGCC-ATGCAGCAG-A---GGAGA-TCA-T--TAACTGTTACAAAGCTGGCCCAGGATA-GGC----AGGAG-Tg
gi|12 : cTTCACGTA-CATGGGTAGC-A-CCATC---CC---A----TAT-CTGA--GAGCAACATCGAAAAAGA---G--G--AAT-----CAGCAAGA--CTCGGCT-TGG--CAGTC-CA-GGC-TTT---CAA-GAA-ACT--ATCAAACG-TCTGGA-AGTCAACGTCCCTT----AACACCAAGACAAAC-CTGAA
gi|13 : A-A-CATCAT-GGAGA--AGGAC-AG-TTGAG-A-GC--GAGATAAAAACC-ATGAAGCAG-ACCTGGGG--TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACC---A-CCGGGT-GT-AAAGGATGATGAT
gi|14 : TTCACATA-CCTGGGTAG-----TATCA--TC---A----CAT-CAGA--CGGCGGCAC------AGA---G--GAGGACATCCACAGC-AGA--CATGG-T-AAGGTCAAGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--G----TGTGGA-GGTCTAC--CCAGTA-C-AGCACCAACgt
gi|15 : ---------GTCAATAACAAGAA----CATCGC-TG-CA-CTG-GACACT-T-GAAGGCAAGAGG-AAGTGAGGGAAG--C----C-AAGA-A-CATCATGGGACA--GGA-C-GG-TTGAG-A-AC--GAAATAAAAG-C-
gi|16 : cccccaaATAAAAG-CTGTGCAGCAG-TCCTGGGGA-T-A-T--TA-------CAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACCGGAA-CC-GGT-GTAAAAGGACtgt
gi|17 : CAGCAG-ACCTGGGGA-TCA-C--TA------ACGAAGCT--------------C----AGGAG-TGGAG-GAAAATTG-TTG-C-TGC--CCTT-CACACC---A-CTGGGT-GT-AAAGGAAAATAATtg
gi|18 : C-AGAGAAAG--TAACCAAC-GA---AGA--AC---TTAT-TGATAGAT--GT-AAGCAAGA------AGACACG-GGTACCATAATT---ACCA-AAC--GCCGAT-GGA-Ggat
gi|19 : cATA-GGC----AGGAG-CGAAG-G-AACTTG-TTGCC-TGC--CCAA-CCCACC---A-C--GGT-GT-AAA--ACGGTGA
gi|2 : -GGAGCTTTTTTTTAAAC-CCTAGAAATATCT--TACTT-TG-GCCGACCTTTCGATCCTGG--GTCTCAAACACACACAG-CATATCCAA-AGAGA-CAAACA-TACTGCACATAGCA-A----G--AGTGA-TC-TACGT--AC-AAGT--CAAGAAT-----GACGAT--A--CCAACTATAT-GTG--AAATGTCT-CTTCGGT-A-ACGTCAA---ACGAA---ACTACGCCA-G-ACAAAATACT-----TA-CCTGTGTAGTAA-TTAT---TTC---A----AA--CAGATGGGATAACAC------TGA----------ACATTCAC-GC-AGATTCTT---T-AAG--CA-GA-GATATACTTC---AAATGAATACTA-G---AACA-TATG---ATTCTAC--CCAGTA-CGAGTA---ACACATAG-CTGAAACTTAA-C-AGAGTTG-GACTTTGTTTCA--GCTC-A-CTATACC---------TGC------AT-T-CAGATCGAA---ATCTTTCCAAT-T-ACTATTCTTCCTATACAACATGCCTCT--CGAA-ACTT--GAT-TTCTGG--------------ACTAAGTGATATAAACAACGAGCTAT-AATTAAATTAAT-A-GAAACAACCGTTAGACATGAGGTACCAT-CT----ATCA-A------CTAT-GG----TGG-AT-AACAT-GT--C--C--G---ACGACCCACTCACACAGTCAAT-ACAAGAA----C-GC-C-TATCA-CTGTGCCCCC-A-GAAGACAAGAGG--GGAGGACG-AG--C----CAAAGATA-CACAAT-GAGCA--GA--C-GGATTGAG-A-AC--GA-ATAAAAG-G-CTGC-CCA----CTGGTAT-TCA-T--TAT-----AGAAACCTG-----------AGC----AGAAA-CAGAGTGAAATTTG-TT----TTC--TATA-CATCCC---A-C--GGT-GT-AAAGGgctgagg
gi|20 : AAGGGGGATCCGCTG-GAA-CCTTTTCTCAA-C-CCTAGAAGATCTTGAtattatatat
gi|21 : acagaaaactctcc-GGC----AAGAG-TGGAG-GAAACTGT-TTG-C-TGA--CCTATCACACC---A--CGGG--GT-AAAGGATGAT
gi|22 : gtAG-TGAAA-TAAACATG-TTG-C-TGC--CCTA-CACACA---A-CAGGGT-GT-AAAGGATGATGAT
gi|3 : -GGAGC-TTTTCT-AA-C-CCTAGAAGAACT-GATACTT--GCGGAGACCTTGCG---CT-GCTGTCTCCACG-CACCCAG-CATATCCAAGAAAGACAAAACAG-GCTGCAAC--ACATA-CGAAAGAGTGGGTCATACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--TC--TTA-AT-GTGG-AAATG-CTGCACCGGTTATAGGTCAATTGATGAAGAAACTACGCCAGG-AC-AACAA--TCACATA-CCTGGGTAGC-A-TTATCAATTC---A-----AT-CAGA--GGGCG-CAC------AAG---A--G--GACAT-CACAGC-AGA--CTTGG-TAAGG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AA-A-TCTGGA-GGTCTCA--CTTGTA-C-AGCACAGACAC--AGCCTGAAGTTATA---AAAGCTGTG---TTGTTTCA--ACCCTC-CTAT-ACGGATCAGAATGCTGGA-GAT-TACAGA--G-ATAGATGTTTC--AA-TAACGATCCTTC--ACACAACATACGTCTGCCGATAACTTAGGATATTCTGCC-AGAGAAAAAGTA--CAAC-GA---AG--AAC---TTAT-AAATAGAT--GTAA-GCAAGA------AGACATG-GGTAGCATCATTCCCATCA-AAC--GCCGAT-GGAGGATGG-ATGAACAT-ATCA---C--GAAAA-AACCCA--------GTCAATAACAAGAA----CAGCACTTG-CA-CTG-G--ACA-A-GAAGGCAAGAGG-AAGAGAGGG-AGA-C----C-AAca
gi|4 : TAC--CCAGTA-C-AGCACCGACACCAAG-CTGAAACTATA-CCAGCGCTGTG---TTGTCTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGAGGAT-TACAGA--GA-CAGACCTTTCCAAA-TTACGATTCTTCCA----------------CCGAATACATAGGATATTCTGGCCAGAGAAGA--TAACCAA-TGA----GAC--C---TTATTAAATAGATC-AA-T-GCAAGG------AGACATA-GGTACCGC--CTCAATTTACAAC--ACCGAT-G-A-GATGTTATAGACAT-GTC-CTTC--G---A-CCCCCCCCCCCCCAGTCAATAACAAGAATGTTCAGCGC-TG-CAGCTG-GACGCA-ACGA--GCAAGAGG-A-GAGAGGG-AGGCC----C-AAGA-AACAT-AT-GGAGA--AGGAC-GG-T-GAG-A-GC--GAGATAAAAG-CTGTGCAGCAGGACCTGGGGA-TCA-C--TA------CCAAAGCT-GCCCAGGAT--GGC----AGGAG-GGGAG-GAATTTTGTTTG-C-TGCAACCAA-CACA-----A-CTGGGT-GT-AAAGG--GATGATca
gi|5 : TGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATGTACTCC--TTA-ATGGTGA-AAGTGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG--ACTCCGCCA-G-ACAAACAACTTCACATACCCTGGGTAGC-AGTTATCAATTC---ATCAGCAT-CAGA--GGGCGACAC------AGAAGGA--G--GACATCCACAGC-AGA--CTTGT-A-AGC--CAGGAGGA-GTA-TTTAGGAGA-AAA-ATTATAT--AACATTCTGGAGGGTCTACA-CTTGTAGC-AGCAC--ACACC-AG-CTGAAGTTATA-CAAAAGCTGTG---TT-TGTCAAGACCCTCACTATAga
gi|6 : caaaaaccatatgcagaaagaagatacgcC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-G-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTCATAA----CAT-CAGA--GGGCGACAC------AAA---GGAG--GACATCCACAGC-AGA--CTTGG-T-AAGGCCAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTCTAC--CTTGTA-C-AGCACCAACACCAAG-CTGAAGTTATA-CAAAAGCTGTG---TTGTTTCA--ACCCTC-CTAT-ACGGATCAGAATGCTGGAAGAT-TACAGA--GAgtcg
gi|7 : t--CAGGG-GA-GTT-TTT---AGA-GAA-ATGA-AT--AGCA-TATGGA-GTTCTAC--CCAGT-------------ACCAAG-CTGAAACTATATC-AGAGCTGTG---TTGTATCA--ACCCTC-CTAT-ATGGATCAGAATCCTGGAGGAT-TACAGA--G-ACATACCTTTCCAAATT-ACGATCCTTCC-ACACAACAGGCTACCGCCGAATACTTAGGATGTTCTTGCTAGAGAAGA--TAACCAA-TGA---AGACAta
gi|8 : c-TG-CA-CTG-GAGACACA-GAAGGCAAGAGGTACGAGAGGG-AG--CGGACC-AAGA-A-CATCAT-GGAGAAGGA--CAGG-TTGAGAA-GCAAGAGATAAAA--C-CTGAAGCAG--CCTGGGAAGTCA-TGCTAC-----ACAAAGCTGGCCCAGGATATGGCCAGAAAGAGATGGAG-G-AACTTG-TTG-CTTGT--CCTA-CACACC---ACCCGGGTGGT-AAAGGA-GATGATtgggtaccatcattaccaaacgcc
gi|9 : agccaagatataaaacatattC--TTA-AA-GTGG-AAATGCCTACTTCGGTTA-AGGTCAA-TGA---AG-AACTACGCCA-G-ACAGACAACTTCACATA-CTAAAGT------TTATCCATTg
gi|9 : TAC--CCAGTA-C-AGCACCAACACCAAG-CTAAAGCTATA-CCATAGCTGTG---TTGTTTCA--AACCTC-CTATA-CGGATCAGAATGCgaagatatacaaagatatcgacaaagattcgaactaaattattatacccagtacagcaccaacaccaagctaaagctataccatagctgtgttgtttcaaacctcctatacggatcagaatgc
blockSeqs : TC . G T T AC TG T C ATC G C AACA . G GAC ATA T T TACGAAAG G A . . A A A GTACT AA T G G T G T T C AA G . C C TAA AA ATCAGC . TG CGAAAA AGGAG CC A TT CT GT G T AC AGG T T T CA C T G GT C AG G CA AA C CC G ACT AG A AC G . TC AA T A TA TG CT G TA A C AAG GT TAT CA GAG T TAATA ACCGTT A C CATTCCC C . . AG T G . CCTTCGACCCCCCCCCCCCCA TGTT A T T G T A AAC T A A CGGAC A T A G AGGG A A A . AA CCG C GAC AG . GC ACTGTT G AT CAGA A T T C T AA T GGA C C G A C
blockSeqs : . G C C C T . . . . . ACG . . GA AGG T . AG G . . . A A A GA . . . A C G . . T A . . C . CAG AA ATAAC . . . GGAG TC . . TA GC . . C . . . . . C . . A A A . CA AT . CA A . . . A A . . AT . T A TA GT G AT A T G C . CA . . GTAA . . C CTCAA . . . A . A . CCGACGACCCACTCACACA . G . . . . A ACA . A . GCC . . . . AGGA . . . . . CCA C AC A . . T G A . . . . . . . . . . C . . T
blockSeqs : . . . . C G . . . . . A . A . . . G C G . . T A . . C . CA AA AT . . . GGAG CC . . T . . . A . . . . . C . . . A A . AG CA . CA G . . . A G . . AC . . A GG TA . AT G . A C . A . . GTAA . . G AATT . . . A . . . CACGAAAAAACCCA . A . . . . C CA . A . GC . . . . AGGA . . . . . CCA A AC A . . C G A . . . . . . . . . . C . . C
blockSeqs : . . . G C A . . T . . . C . CA CA AC . . . GG CC . . T . . . A . . . . . C . . . T A . CG CA . TC A . . . A . . . AC . . A . . . A . . A T . C . . CAAT . . C CT . . . . . G . . . . A TT . G . AC . . . . AGGA . . . . . CTG C TC A . . . G A . . . . . . . . . . T . . A
blockSeqs : . . . . . . . . . . . . . . CA A AA . . . AG C . . A . . . A . . . . . C . . . A A . CA CA . CC A . . . A . . . . . T . . . . . . . . A CA . A . C . . . . GGA . . . . . CTG C AC A . . . G A . . . . . . . . . . C . . C
blockSeqs : . . . A . . . . . . . T . . . A . . . . . . . . . T A . CA CA . C G . . . A . . . . . AA . C . C . . . . GA . . . . . GC C A T . . . G A . . . . . . . . . . A . . T
blockSeqs : . . . . . . T . . . . . . . . . T A . . C . . T . . . . . . C . . . . GA . . . . . CC C C A . . . . . . . . . . . . . . . T . . T
blockSeqs : . A . . . . . A . . . . . . . . . . . . . . . . . C . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : G* ATA****** GGAG***** CC A* CG CA CC* A* AC* A* A** C* CA CT***** ** **** AGGA** CCG* AC*
originalCons : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTCAA-C-CCTAGAAGAACTTGATACTT-TGCGGAGACCTTGCG---CTGGCTGTCTCAACGACACACAG-CATATCCAAGAGAGA-AAAACGGCNCTGCAACTAGCA-A-CGAA--AGTGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--CC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-G-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTC---A----CAT-CAGA--GGGCGACAC------AGA---G--G--GACATCCACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTCTAC--CCNGTA-C-AGCACCGACACCAAG-CTGAAGCTATA-C-AGAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATGCTGGAGGAT-TACAGA--GAACAGATCTTTCCAAA-T-ACGATCCTTCCAACACAACATGCNTCTGCCGAANACTTAGGATATTCTGGC-AGAGAAGA--TAACCAACTGA---AGACAAC---TTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTACCAT-ATTCAAATCA-AAC--GCCGAT-GGA-GATGG-ATGAACAT-GTCAC--C--G---A-AACCC---------GTCAATAACAAGAA----CAGCGC-TG-CA-CTG-GACACA-A-GAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGA--GG--C-GG-TTGAG-A-GC--GAGATAAAAG-C-GTGCAGCAG-ACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGC--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
finalCons : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTCAA-C-CCTAGAAGAACTTGATACTT-TGCGGAGACCTTGCG---CTGGCTGTCTCAACGACACACAG-CATATCCAAGAGAGA-AAAACGGCNCTGCAACTAGCA-A-CGAA--AGTGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--CC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-G-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTCATA------AT-CAGA--GGGCGACAC------AGAGGAG-----GACATCCACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTCTAC--CCNGTA-C-AGCACCGACACCAAG-CTGAAGCTATACC-AGAGCTGTG---TTGTTTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGAGGAT-TACAGA--GAC-AGATCTTTCCAAA-T-ACGATCCTTCCA-CACAACATGCNTCTGCCGAANACTTAGGATATTCTGGC-AGAGAAGA--TAACCAAC-GA---AGACAAC---TTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTACCATCT-----ATCA-AAC--GCCGAT-GGA-GATGG-ATGAACAT-GTCAC--C--G---A-AACCC---------GTCAATAACAAGAA----CAGCGC-TG-CA-CTG-GACACA-A-GAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCAT-GGAGAAGGA--C-GG-TTGAG-A-GC--GAGATAAAAGCCG-TGCAGCAGAC-CTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGC--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTCCACACCAGAACAGAGGAATACAATTATAC
Unaligned ( gi|24 ): ATTAAAGCTTATCCATTAAAGATAAACAAAGT
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 11 1 111 22 222 1111 1 111 2222 333333333 1 11 1 22222 1 4444444444444 111111 11 11 11 1 1 11 1 111 1111 2222222 111111 44444444444 1 1 0000000000000000000000000000 2222 1111111 222222
lowQualScore : 88 0 2 6 6 666 55 00 6 333 6 6 1111 3 6 999 0000 7 7 666666666 2 0 33 0 3 3 3 77777 99 6 3 77 1 1 6 6 1 99 6 6 6 0 5 5 5 66 2222222222222 77 0 555555 1 1 77 5 77 666 33 5 5 88 888 5 5 5 66 2 5 5 99 1 4 4 11 11 4 4 1 888 66 5 5 3 6 88 8 6 8 8 0 22 44 5 00 0 3 6 3 6 000 6 1 7777 8 9999999 999999 6 6 33333333333 6 6 99 8 88 0 6 0 0000000000000000000000000000 0000 6 5 5 5 5 1 7777 5 2 5 7777777 5 5 5 1 5 5 5 5 66 6 1 7777 66 4 66 111111 1 44 7777 3 3 3 3 3 55 3 666 3 4 3 3 6
lowQualScore : .. . . . . ... .. .. . ... . . .... . . ... .... . . ......... . . .. . . . . ..... .. . . .. . . . . . .. . . . . . . . .. ............. .. . ...... . . .. . .. ... .. . . .. ... . . . .. . . . .. . . . .. .. . . . ... .. . . . . .. . . . . . .. .. . .. . . . . . ... . . .... . ....... ...... . . ........... . . .. . .. . . . ............................ .... . . . . . . .... . . . ....... . . . . . . . . .. . . .... .. . .. ...... . .. .... . . . . . .. . ... . . . . .
lowQualScore : 00 0 5 5 5 222 88 77 7 333 7 7 3333 3 7 000 3333 3 3 000000000 5 0 88 0 2 2 2 22222 22 7 3 77 0 0 7 7 7 88 7 7 7 1 0 0 0 22 1111111111111 99 1 666666 7 4 33 7 99 111 88 0 0 44 888 0 0 0 99 5 0 0 55 0 0 0 44 33 4 5 1 888 99 0 0 5 7 88 0 0 0 0 8 00 88 0 22 8 8 7 3 7 888 7 7 6666 0 2222222 222222 7 7 77777777777 7 7 22 0 88 0 5 0 0000000000000000000000000000 8888 3 7 7 7 7 4 7777 0 0 0 5555555 0 0 0 9 0 0 0 0 99 4 1 7777 77 4 11 777777 1 33 7777 3 6 6 6 6 00 6 444 6 3 6 6 4
consensus : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTCAA-C-CCTAGAAGAACTTGATACTT-TGCGGAGACCTTGCG---CTGGCTGTCTCAACGACACACAG-CATATCCAAGAGAGA-AAAACGGCNCTGCAACTAGCA-A-CGAA--AGTGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--CC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-G-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTC---AT-A--A--TCAGA--GGGCGACAC---AG-AGGAGGACATCCACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTCTAC--CCNGTA-C-AGCACCGACACCAAG-CTGAAGCTATACCAGAGCTGTG---TTGTTTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGAGGAT-TACAGAGA-TAGATCTTTCCAAA-T-ACGATCCTTCC-A-CACAACATGCNTCTGCCGAANACTTAGGATATTCTGG-C-AGAG-AAGA--TAACCAAC-GAAGACAACTTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTAC-CAT-----C--T--ATC-A-AAC--GCCGAT-GGA-GATGG-ATGAACAT-GTCAC--C--G---A-AACCC---------GTCAATAACAAGAA----CAGCGC-TG-CA-CTG-GACACA-A-GAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCATGGAGAAGGAC-GG-TTGAG-A-GC--GAGATAAAAGCCGTGCAGCA-GACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGC--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
Reference ( family-4402 ) : NNNNNNNNAAGGGGGATCCGCTG-GGAGCCTTTTCTCAA-C-CCTAGAAGAACTTGATACTT-TGCGGAGACCTTGCG---CTGGCTGTCTCAACGACACACAG-CATATCCAAGAGAGA-AAAACGGCNCTGCAACTAGCA-A-CGAA--AGTGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--CC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-G-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTC---AT-A--A--TCAGA--GGGCGACAC---AG-AGGAGGACATCCACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTCTAC--CCNGTA-C-AGCACCGACACCAAG-CTGAAGCTATACCAGAGCTGTG---TTGTTTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGAGGAT-TACAGAGA-CAGATCTTTCCAAA-T-ACGATCCTTCC-A-CACAACATGCNTCTGCCGAANACTTAGGATATTCTGG-C-AGAG-AAGA--TAACCAAC-GAAGACAACTTAT-AAATAGATC-GT-A-GCAAGA------AGACATG-GGTAC-CAT-----C--T--ATC-A-AAC--GCCGAT-GGA-GATGG-ATGAACAT-GTCAC--C--G---A-AACCC---------GTCAATAACAAGAA----CAGCGC-TG-CA-CTG-GACACA-A-GAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCATGGAGAAGGAC-GG-TTGAG-A-GC--GAGATAAAAGCCGTGCAGCA-GACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGC--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
gi|1 : AAGGGGGA--CGCTGTGGAGCCTTTTCTCAA-AACCTAGAAGAACTTGATACATATGCGGAGACCTTGCG---CTGGCTGTCTCA-CGACACACAGTCATATCCAAGAGA---AAAACGGCTC-GCAACTAGCA-AACGAA--GGTGGGTC-TACGTTAATCAAGTACCAAGA-GACGGAGACGATG-AA-TC--TTA-ATTGTGGGAAATGC-TGCACCGGTTA--GGTCAA-TGATGAAG-AAATACGCCA-GGACAAACAA--TC-CATA-CCTGGGTAGC-A-TTATCAATTCTACAT-A------CAGA--GGG-GACAC---AG-AGA--GACATC-ACAGC-AGA--CTTGG-T-AGG--CAGGA-GA-GT--TTT---GCA-GAA--TTA-AT--AAAA-TCTGGA-GGTCT-T--CCTGTA-C-AGCAA-GACAC--AG-CTGAAGTTAT--CAAAGCTGTG---TTGTTTCA--ACCCTC-CTATAACGGATCAGAATCCTGGA--ATCTACAGAGAATAGGTTTTTCCAAA-T-ACGATCCTTCC-AGCACAACATACGTCTGCCGATAACTTAGGATATTCTTG-C-AGAA-AAG---TAACCAACTGAAGACAACTTAT-AAATAGATT-GT-A-GCAAGA------AGACATG-GGTACATAT-----A--TAAATC-A-AACGGGCCGGTAGGA-GATGG-ATGAACATAGTTATG-CAAA---A-AAACC---------GTCCATAACAAGAAG---CAG-AC--G-CA-CTG-GACACA-G-AAAGGCAAGAGG-AAGAGAGGG-AG--C----C-AAGA-A-CATCATGGAGA--GGC--G-TTGAG-ATGC--GAGATAAGAA-CATA-AGCA-AA-CTGGGGT-CCAGT--TA------ACAA--CTGGCCCAGGATA-GGC----AGGA--TGGAG-GAAACTTG-TTG-C-TGT--CCTA-ACCACC---A-CCGGGT-GT-AAAGGATGATGAT
gi|10 : aacagaag-A-GAAGGCAAGAGG-AAGAGAGGG-AGG-C----C-AAGA-A-CATCATGGAGGAGGGC-GG-TTGAG-A-AC--AAGATAAAAGCCGTGCAGCA-GACCTGGGGA-TCA-T--TA------ACAAAGCTGGCCCAGAATA-TGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACC---A-CCGGGT-GT-AAAGGACGATGAT
gi|11 : cCCA---------GTCAATAAAAAGAA----CAGCAC-TG-CA-CTG-GACCCC-A-GGAGGCAAGAGG-AAGAGAAGG-GG--C----C-AAGA-A-CATCATGG---AGGAC-GG-TTGAG-A-AT--GAGATAAAAGCCATGCAGCA-GA---GGAGA-TCA-T--TAACTGTTACAAAGCTGGCCCAGGATA-GGC----AGGAG-Tg
gi|12 : cTTCACGTA-CATGGGTAGC-A-CCATC---CC---AT----A--TCTGA--GAGCAACATCGAAA-AAGAGGA-AT---CAGCAAGA--CTCGGCT-TGG--CAGTC-CA-GGC-TTT---CAA-GAA-ACT--ATCAAACG-TCTGGA-AGTCAACGTCCCTT----AACACCAAGACAAAC-CTGAA
gi|13 : A-A-CATCATGGAGAAGGAC-AG-TTGAG-A-GC--GAGATAAAAACCATGAAGCA-GACCTGGGG--TCA-T--TA------ACAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACC---A-CCGGGT-GT-AAAGGATGATGAT
gi|14 : TTCACATA-CCTGGGTAGT-A-TCATCA---C---AT--------CAGA--CGGCGGCAC---AG-AGGAGGACATCCACAGC-AGA--CATGG-T-AAGGTCAAGA-GA-GTA-TTT---AGA-GAA-ATTA-AT-----G-TGTGGA-GGTCTAC--CCAGTA-C-AGCACCAACgt
gi|15 : ---------GTCAATAACAAGAA----CATCGC-TG-CA-CTG-GACACT-T-GAAGGCAAGAGG-AAGTGAGGGAAG--C----C-AAGA-A-CATCATGGGACAGGAC-GG-TTGAG-A-AC--GAAATAAAAGCTGT
gi|16 : cccccaaATAAAAGCTGTGCAGCA-GTCCTGGGGA-T-A-T--TA-------CAAAGCTGGCCCAGGATA-GGC----AGGAG-TGGAG-GAAACTTG-TTG-C-TGT--CCTA-CACACCGGAA-CC-GGT-GTAAAAGGAC
gi|17 : CAGCA-GACCTGGGGA-TCA-C--TA------ACGAAGCT--------------C----AGGAG-TGGAG-GAAAATTG-TTG-C-TGC--CCTT-CACACC---A-CTGGGT-GT-AAAGGAAAATAATtg
gi|18 : -C-AGAG-AAAG--TAACCAAC-GAAGA--ACTTAT-TGATAGAT--GT-AAGCAAGA------AGACACG-GGTAC-CATAA---T--T--ACC-A-AAC--GCCGAT-GGA-Ggat
gi|19 : cATA-GGC----AGGAG-CGAAG-G-AACTTG-TTGCC-TGC--CCAA-CCCACC---A-C--GGT-GT-AAA--ACGGTGA
gi|2 : -GGAGCTTTTTTTTAAAC-CCTAGAAATATCT--TACTT-TG-GCCGACCTTTCGATCCTGG--GTCTCAAACACACACAG-CATATCCAA-AGAGA-CAAACA-TACTGCACATAGCA-A----G--AGTGA-TC-TACGT--AC-AAGT--CAAGAAT-----GACGAT--A--CCAACTATAT-GTG--AAATGTCT-CTTCGGT-A-ACGTCAA---ACGAA---ACTACGCCA-G-ACAAAATACT-----TA-CCTGTGTAGTAA-TTAT---TTC---A--A--A---CAGATGGGATAACAC---TG-A-----ACATTCAC-GC-AGATTCTT---T-AAG--CA-GA-GATATACTTC---AAATGAATACTA-G---AACA-TATG---ATTCTAC--CCAGTA-CGAGTA---ACACATAG-CTGAAACT-TAACAGAGTTG-GACTTTGTTTCA--GCTC-A-CTATA-C----C----TGC------AT-T-CAGATC-GAAATCTTTCCAAT-T-ACTATTCTTCCTA-TACAACATGCCTCT--CGAA-ACTT--GAT-TTCTGGAC-TAAGTGATA--TAAACAAC-GAG------CTAT-AATTAAATTAAT-A-GAAACAACCGTTAGACATGAGGTAC-CAT-----C--T--ATC-A-A------CTAT-GG----TGG-AT-AACAT-GT--C--C--G---ACGACCCACTCACACAGTCAAT-ACAAGAA----C-GC-C-TATCA-CTGTGCCCCC-A-GAAGACAAGAGG--GGAGGACG-AG--C----CAAAGATA-CACAAT-GAGCA-GAC-GGATTGAG-A-AC--GA-ATAAAAGGC-TGC-CCA----CTGGTAT-TCA-T--TAT-----AGAAACCTG-----------AGC----AGAAA-CAGAGTGAAATTTG-TT----TTC--TATA-CATCCC---A-C--GGT-GT-AAAGGgctgagg
gi|20 : AAGGGGGATCCGCTG-GAA-CCTTTTCTCAA-C-CCTAGAAGATCTTGAtattatatat
gi|21 : acagaaaactctcc-GGC----AAGAG-TGGAG-GAAACTGT-TTG-C-TGA--CCTATCACACC---A--CGGG--GT-AAAGGATGAT
gi|22 : gtAG-TGAAA-TAAACATG-TTG-C-TGC--CCTA-CACACA---A-CAGGGT-GT-AAAGGATGATGAT
gi|3 : -GGAGC-TTTTCT-AA-C-CCTAGAAGAACT-GATACTT--GCGGAGACCTTGCG---CT-GCTGTCTCCACG-CACCCAG-CATATCCAAGAAAGACAAAACAG-GCTGCAAC--ACATA-CGAAAGAGTGGGTCATACGT--AT-AAGTACCAAGAAGACGGAGACGATG-A--TC--TTA-AT-GTGG-AAATG-CTGCACCGGTTATAGGTCAATTGATGAAGAAACTACGCCAGG-AC-AACAA--TCACATA-CCTGGGTAGC-A-TTATCAATTC------A--A--TCAGA--GGGCG-CAC------AAGAGGACAT-CACAGC-AGA--CTTGG-TAAGG--CAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AA-A-TCTGGA-GGTCTCA--CTTGTA-C-AGCACAGACAC--AGCCTGAAGTTATA--AAAGCTGTG---TTGTTTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGA-GAT-TACAGAGA-TAGATGTTTC--AA-TAACGATCCTT-C-A-CACAACATACGTCTGCCGATAACTTAGGATATTCTGC-C-AGAG-AAAAAGTA--CAAC-GAAG--AACTTAT-AAATAGAT--GTAA-GCAAGA------AGACATG-GGTAG-CATCATTCC--C--ATC-A-AAC--GCCGAT-GGAGGATGG-ATGAACAT-ATCA---C--GAAAA-AACCCA--------GTCAATAACAAGAA----CAGCACTTG-CA-CTG-G--ACA-A-GAAGGCAAGAGG-AAGAGAGGG-AGA-C----C-AAca
gi|4 : TAC--CCAGTA-C-AGCACCGACACCAAG-CTGAAACTATACCAGCGCTGTG---TTGTCTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGAGGAT-TACAGAGA-CAGACCTTTCCAAA-TTACGATTCTTCC-A-C---------------CGAATACATAGGATATTCTGG-CCAGAG-AAGA--TAACCAAT-GA-GAC--CTTATTAAATAGATC-AA-T-GCAAGG------AGACATA-GGTAC-CGC-----C--TCAATTTACAAC--ACCGAT-G-A-GATGTTATAGACAT-GTC-CTTC--G---A-CCCCCCCCCCCCCAGTCAATAACAAGAATGTTCAGCGC-TG-CAGCTG-GACGCA-ACGA--GCAAGAGG-A-GAGAGGG-AGGCC----C-AAGA-AACAT-ATGGAGAAGGAC-GG-T-GAG-A-GC--GAGATAAAAGCTGTGCAGCAGGACCTGGGGA-TCA-C--TA------CCAAAGCT-GCCCAGGAT--GGC----AGGAG-GGGAG-GAATTTTGTTTG-C-TGCAACCAA-CACA-----A-CTGGGT-GT-AAAGG--GATGATca
gi|5 : TGGGTC-TACGT--AT-AAGTACCAAGAAGACGGAGACGATGTACTCC--TTA-ATGGTGA-AAGTGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG--ACTCCGCCA-G-ACAAACAACTTCACATACCCTGGGTAGC-AGTTATCAATTC---ATCAGCA--TCAGA--GGGCGACAC---AGAAGGAGGACATCCACAGC-AGA--CTTGT-A-AGC--CAGGAGGA-GTA-TTTAGGAGA-AAA-ATTATAT--AACATTCTGGAGGGTCTACA-CTTGTAGC-AGCAC--ACACC-AG-CTGAAGTTATACAAAAGCTGTG---TT-TGTCAAGACCCTCACTATA-ga
gi|6 : caaaaaccatatgcagaaagaagatacgcC--TTA-AT-GTGG-AAATGCCTGCTCCGGTTA-AGGTCAA-TGATGAAG-AACTACGCCA-G-ACAAACAACTTCACATA-CCTGGGTAGC-A-TTATCAATTC---AT-A--ACATCAGA--GGGCGACAC---AA-AGGAGGACATCCACAGC-AGA--CTTGG-T-AAGGCCAGGA-GA-GTA-TTT---AGA-GAA-ATTA-AT--AACA-TCTGGA-GGTCTAC--CTTGTA-C-AGCACCAACACCAAG-CTGAAGTTATACAAAAGCTGTG---TTGTTTCA--ACCCTC-CTATA-CGGATCAGAATGCTGGAAGAT-TACAGAGA-TAgtcg
gi|7 : t--CAGGG-GA-GTT-TTT---AGA-GAA-ATGA-AT--AGCA-TATGGA-GTTCTAC--CCAGTA-C------------CAAG-CTGAAACTATATCAGAGCTGTG---TTGTATCA--ACCCTC-CTATA-TGGATCAGAATCCTGGAGGAT-TACAGAGA-CATACCTTTCCAAATT-ACGATCCTTCC-A-CACAACAGGCTACCGCCGAATACTTAGGATGTTCTTG-CTAGAG-AAGA--TAACCAAT-GAAGACA
gi|7 : cGA------AGACATG-GGTAC-CAT-----CATT--ACC-A-AAC--GCCtgggtaccatcattaccaaacgcc
gi|8 : ccaggggagtttttagagaaatgaatagcatatggagttctacccagtaccaagctgaaactatatcagagctgtgttgtatcaaccctcctatatggatcagaatcctggaggattacagagacatacctttccaaattacgatccttccacacaacaggctaccgccgaatacttaggatgttcttgctagagaagataaccaat-TG-CA-CTG-GAGACACA-GAAGGCAAGAGGTACGAGAGGG-AG--CGGACC-AAGA-A-CATCATGGAGAAGGACAGG-TTGAGAA-GCAAGAGATAAAA-CC-TGAAGCA-G-CCTGGGAAGTCA-TGCTAC-----ACAAAGCTGGCCCAGGATATGGCCAGAAAGAGATGGAG-G-AACTTG-TTG-CTTGT--CCTA-CACACC---ACCCGGGTGGT-AAAGGA-GATGAT
gi|9 : agccaagatataaaacatattC--TTA-AA-GTGG-AAATGCCTACTTCGGTTA-AGGTCAA-TGA---AG-AACTACGCCA-G-ACAGACAACTTCACATA-CTAAAGT------TTATCCATTg
gi|9 : TAC--CCAGTA-C-AGCACCAACACCAAG-CTAAAGCTATACCATAGCTGTG---TTGTTTCA--AACCTC-CTATA-CGGATCAGAATGCgaagatatacaaagatatcgacaaagattcgaactaaattattatacccagtacagcaccaacaccaagctaaagctataccatagctgtgttgtttcaaacctcctatacggatcagaatgc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTCCACACCAGAACAGAGGAATACAATTATAC
Unaligned ( gi|24 ): ATTAAAGCTTATCCATTAAAGATAAACAAAGT