lowQualScore                  :                                                                                                                                                                                                                                                                                                             111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                     11111111111111111111111111111111111111111111111111111                                                                                             
lowQualScore                  :           222                         2222222222      2             222222222222                          1          444                                                    111                        44444444444444444444444444   1  2222222222    11111111                               44444444        555555555555555555555555555555555555555555555555555555555555555555555555555555           1                                                       111 222222                             1                        111            2222   11                     222   1       1111       1111   33                                   11111     11    333333        111111111  1          33333333333                222      33          1111111    1        2          11   3333          1111     111       2              11  111      1      11  44444444444444444444444444444444444444444444444444444  1                1     1    222222   1              22    11  33333333  1                  
lowQualScore                  :           000      5 2    2  2    3 3 2222222222 33   4      2  3   888888888888    6   3          44     7 3 44 3   444   3      3  77     6    3      44  6        666  3 000  7777       9999    7  00000000000000000000000000   4  0000000000 3  11111111                 5  88         66666666        666666666666666666666666666666666666666666666666666666666666666666666666666666  666      9        55   88  3 99   6    6        55       55 55   000 666666 6 555   3  3  3     7777 3  1   3           55  3    999   55     4 2222   77    777    66    5 5 666   0  5    0000  5  5 2222   55          6       1    99  6  1    66666     11    444444        999999999  2 99       66666666666  1        6  6 111      55          9999999    3        0       0  11   2222      6   4444     000       0      6     8 11  444      3      55  77777777777777777777777777777777777777777777777777777  0                0     0  1 888888   0              33    33  66666666  0                  
lowQualScore                  :           ...      . .    .  .    . . .......... ..   .      .  .   ............    .   .          ..     . . .. .   ...   .      .  ..     .    .      ..  .        ...  . ...  ....       ....    .  ..........................   .  .......... .  ........                 .  ..         ........        ..............................................................................  ...      .        ..   ..  . ..   .    .        ..       .. ..   ... ...... . ...   .  .  .     .... .  .   .           ..  .    ...   ..     . ....   ..    ...    ..    . . ...   .  .    ....  .  . ....   ..          .       .    ..  .  .    .....     ..    ......        .........  . ..       ...........  .        .  . ...      ..          .......    .        .       .  ..   ....      .   ....     ...       .      .     . ..  ...      .      ..  .....................................................  .                .     .  . ......   .              ..    ..  ........  .                  
lowQualScore                  :           999      7 9    9  9    6 9 0000000000 55   9      9  1   777777777777    2   6          66     7 3 66 3   222   3      1  33     2    1      22  2        444  6 000  7777       6666    3  22222222222222222222222222   5  9999999999 6  55555555                 0  22         55555555        444444444444444444444444444444444444444444444444444444444444444444444444444444  444      9        00   66  6 66   7    7        00       00 00   000 333333 7 444   1  1  1     1111 3  4   5           00  0    888   11     0 7777   88    888    11    0 0 000   0  0    6666  0  0 4444   33          7       0    22  7  0    77777     77    777777        333333333  2 22       88888888888  0        7  7 777      88          7777777    5        4       8  00   2222      7   2222     000       4      7     0 00  000      3      00  00000000000000000000000000000000000000000000000000000  0                0     0  0 888888   0              00    88  22222222  0                  
consensus                     :   GAGTGAAAA--CAACAA-C-CACG-TT-GCTAAGNT------A---A-GAAA-ATTTGA-GC-TTTA----TA--T--AGGT-ATT-TCGTCAATCG--GACGAAT-G--T-GATG-CAGT-GGCCAA-GG--AATTT-GTCT-TCCGTA--CC-AAATGATT---TA-T---TT----CATACAGA---ACTG-CT----T-A----T------A-------TTT-CC----------T-GC---AG---AAGTTTTGCCCCAGGTT-CAA-CCTAGGGAA--A--TNTGTGCATTT---------------T---T------------T----------------A--------------C-------------CT---TTACCA-TTATTGTA--CCA--CG-A-TCAA-TCTG-TAAATATT--CTTTTTA--A--ACC---CCCC---C-T---TCA-TT-CT-AACAA----A-GATTTTTCTTTCCAATGT--GANTAAA-T-ATAATTTTAC-CA---TGAT-CCGA---AAAG--AAAA-T-GTT-GTG-CA-TGAG----AT-CA-T-AT-TGT--TGTGCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----GAGAA-GTTTTA--GG-ATGAAAAA-----A---CCTG--CGGAAAA----TA-----CGCCAAATGGG-CC-A-T-TGAACGA-ATGAATGACT-----GATTATTTAGCAAGGAATCTTCCTTT--TCA-N--ATAACT-CAT----TTTCA--TTGGACGATTTTCGC-AAAGC-A--GT---TTTAGA-ACTTAAA-TT-TGGA-A---ACACTTG-------GTTT--ATGC---ACA-A-ATAAA---CGAT-TCTATTACAAACTATA-ATCAA-CACA------TGC-ATTTATCGATGCAAGNCTTT--AT--------GT-TTGAATCAATATAAAGGA
Reference ( gi|2 )            :   GAGTGAAAA-ACAACAA-C-CACG-TT-GCTAAGTT------A---A-AAAAGATTTGA-GC-TTTG----TA--T--AGGT-ATT-TCGTCAATCG--GACGAAT-G--T-GAT--TAGT-GGCCAA-GG--AATTT-GTCT-TCCGTA--CC-AAATGATT---TA-T---TT----CATACAGG---ACTG-CT----C-A----T------A-------TTT-CC----------T-GC---AG---AAGTTTTGCCCCAGGTT-CAA-CCTAGGGAA--T--TG-GTGCATTT---------------T---T------------T----------------A--------------C-------------CT---TTACCAATTATTGTA--CCA--CG-A-CCAA-TCTG-TAAATATT--CTTTTTA--A--ACC---CGCT---C-T---TCA-TT-CT-AACAA----A-GATTTTTCTTTCCAATGT--GAATAAA-A-ATAGTTTTAC-CT---TGAA-CCGA---AAAG--AAAA-T-G-T-GTG-CA-TGAG----AT-CA-T-AT-TGTA-TGTGCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----GAGAA-ATTTTA--AG-ATGAAAAA-----A---CCAG--CGGAAAA----TA-----CGCCAAATGGG-CC-A-A-TGAACG--ATGAATGACT-----GATTATGTAGCAAGGAATCTTCCTTT--TCA-G--ATAACT-CAT----TTTCA--TTGGACGATTTTCGC-AGAGC-A--GT---TTTAGA-ACTTAAAATT-TGAA-A---ACACCTG-------GTTTT-ATGC---ACAGA-ATAAA---CGAT-TTTATTACAAACTATA-ATCAA-CATA------TGC-ATTTATCGATGCAA-TCTTT--AT--------AT-TTGAATCAATATAAAGGA
gi|4                          :   GAGTGAAAA--CAACAA-T-CACG-TT-GCTATGAT------A---A-GAAA-ATTTGA-GC-CTT------A--T--TGGT-ATT-TCGTCAATCG--GACGA-T-G--T-GATG-CAGT-GGCCAA-GG--AATTT-GTCT-TCCGTA--CC-AAATGATT---TA-T---TT----CATACAGA---ACTG-CT----T-A----T------ACGTGTATTTT-CC----------T-GC---A---------------CAAGTT-CAA-CCTAGGGAA--A--TGTGTGCATTT---------------T---TGATTAGTATTCTT----------------AAA------------C-------------CT---TTACCA-TTATTGTA--CCA--CG-A-TCAA-TCTG-TAAATATT--CTTTTTA--A--ACC---CCTC---C-T---TCA-TT-CT-AACAA----A-GA-TTTTCTCTCCAATGT--GACTAAA-T-ATAAGTTTAC-CA---TGAT-CCGA---AAAG--AAAA-T-GTT-GTG-CA-TGAG----AT-CG-T-A--TGT--TGTGCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----TAGAA-GTTTT---GG-ATGAAAAA-----A---CCTG--CGGAAAA----AAAC---CGCCAAATGGG-CC-ACATTGAACGAAATGAA-GACT-----G-TTAT-TAGAAAGGAATTTTACTTT--TCATA--ATAACT-CAT----TTTCAGTTTGGACGA-TTTCGC-A
gi|6                          :  cGAGTGAAAA--CAACAA-A-CGCG-TT-GCTCAGT-------A---A-AGAAAATTTGA-GA-TATA----TA--TG-AGGT-ATT-TCGTTAATCA--GACGA-T-G--T-GATG-CAGT-GGCCAA-GG--GATTT-GTCT-TCCGTA--CC-AAATGATT---TA-T---TT----CATACAGG---ACTG-CT----T-A----T------A-------TTT-TC----------TTGC---AG---AAGTTTTGTCCCAGGTT-CAA-CCCAGGGAA--A--TATGTGCATTT---------------T---T------------T----------------ATTAGTATTCCTAAAC-------------TT---TTACCA-TTATTGTA--CCA--CG-A-TCAA-TCTG-TAAATATT--CTTTTTA--A--ACC---CCTC---C-T---TCA-TT-CT-AACAA----A-GA-TTTTCTTTCCAATGT--GAATAAA-T-ACAATTTTAC-CA---TGAT-CCGA---AAAG--AAAA-A-GTT-GTG-CA-TGAG----AT-CA-TAAT-TATGTTGTGCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----GAGAA-GTTTT---GG-ATGAAAAA-----AACCCCTG--CGGA------------------AAATGGG-CC-A-T-TGA-----ATGAATGACT-----AATTATTTAGCAAG
gi|5                          :   GAGTGAAA---CAACAA-C--ACG-T--GCTATGAT------A---A-GAAA-ATTTGA-G--TTTA----T---T--AGGT-ATT-TCGTCAAT-G--GACGATTTG--T-GAT--CAGT-G-CCAA-GG--AATT--GTCT--CCGTA--CCCAAATGATT---TA-T---TT----CA-ACAGA---ACTG-CT------A----T------A-------TTTTCC----------T-GC---CA---CAGTTTT-CCCCA--TT-CAAATCTAGGAAAAAT--TT-GTGCACTT---------------T---TGATTAAGTCT--T----------------A--------------A-------------CC---TTACCA-TTATTGTA--CCA--CG-A-TCAA-TCTGTTAAATATT--C-TTTTA--A--ACC---CCTC---C-T---TCA-TT-CT-AACAA----A-GA-TTTTCTTTCCAATGT--GACT-GA-T-ATAA-TTTAC-CA---TGAT-CCAA---AAAG--AAAA-T-GTT-GTG-CA-TGAGGATCAT-CA-T-GT-TGTG----GCAGGAG-AAAACCGA-TGT--GC-ATGAGAA-----TAGAA-GTTTT---GG-ATGAAAAA-----A---CT-G--CGAAAAA----TA-----CGCCAAATGGC-CC-A-T-TGAACGA-ATGAATGACT-----GTTTATATAGCAATG-ATCTCCCTTT--TCA-T--ATAACT-CAT----TTTCA--a
gi|1                          :  cGATTGAAAAGAAAAC---C-CACG-TT-GC-AAGTT------A---A-GAAAAATTTGA-GC-TT-A----TA--TTAAGGT-ATT-T-GTAAATCGCGGACGAAT-G--T-GATGACAGTTGGCCAA-GGGAAATTT-GTCT-TCCGTA--CCCAAATGATT---TA-TA--TT----CATACAGA---ACTG-CT----T-A----TCACACTA-------TTT-TCCT--------T-GC---AG---AAATTTTGCCACGGGTT-CAA-CCTAGGGAA--A--TATGTGCATTTATGAAATTAGGTATTC---T------------T----------------AAAA-----------C-------------CG---TTAC-AATTATTGTAAACCAGACG-A-TCAA-TCTGATGAATATT--CTTTTTA--A--ACC---C--T---C-TAGATCA-TT-CT-AAAAA----A-GATTTTCTTTTCGCATGT--GACTAAATATATAATTTTAC-CCGGATGAATCCGA---AAAG--AAAA-T-GTT-GTGACA-TGAG----AT-CAGT-CA-TGT--TGTGCATGAGAAAAACTGGTTGTGGGC-ATAAGAAGAATGGAGAAGGTTTTACTGG-ATGAAAAAACAACA---CTAGCTCGGAAAAAGAGCAAAGACCGAAAAATGGGACC-A-T-CGAAGGA-ATGAATGACTACGACAATTATTT-GCAGGG--TCTTCCTTTTATCA-GTAATAATTACATGATATATCA---TGGACGATTTT-GCAAAAGC-AGGGTTTATTTAGA-ACTCTAATTT-TGAACAGTTACATTCGTATTATAATTTA-ATGCTGGACAGAGATAAAACCTAAT-TCTATTACAAACTATACATCAA-C
gi|12                         :  tGAGTGAAAA--CTACAA-C-CACG-AT-GCTATGAT------A---A-GAAA-ATTTGA-GCCTTTA----TA--TT-AAGT-ATT-TCGTCAATCC--GACGA-T-G--T-GATG-CAGT-GGCCAA-GGG-AATTT-GTCT-TCCGTA--CC-AAATGATT---TA-T---TT----CATACAGA---ACTG-CT----TTA----T------A-------TTTTCC----------T-GC---AC---AAGTTTTGCCCCAGGTTTCAA-CCTAGGGAA--T-----GTGCATTT---------------T---T------------TGATTAGTATTTCTTTAA--------------C-------------CT---TTACC--TTATTGTA--CCA--CG-A-TCAACTCTG-TAAAT-TT--CTTTTTA--T--ATC---CCTC---C-T---TCACTT-CT-
gi|11                         :  cGAG-GGAAA-ACAACAAAC-CACG-TT-GCTAAGTT------A---AGAAAAG--TTGA-GC-TTTA----TA--TT-AGGTTATG-TCATCAATCG---ATGA-T-G--TTGATGGCAG--GGCCAACGG--AATTT-GTCT-TCCGTA--CC-AAATGATTCTTTA-T---T-----CATACAG----ACTGGCT----A-A----T------AATATT--CTT-CC----------T-GC---GG---AAGTTTTGCCCCAGGTA-CA--CCTAGGGAA--TAATA-GT--ATTC---------------C---T------------A----------------A--------------C-------------CT---TTACCTATTATTGTA---CA--CG-ATTCAA-TCTG-TAAATATTTATTTTTTAATA--ACC---C-CTTCAC-T---TCA-TT-CT-AACAA----A-TATTTT
gi|18                         : gcGAGTGAAAA--CAACAA-C-CACG-TT-GCTAAGTTTATATTAGTTA-AGAAAATTTGA-GC-TTTA----TAA-T--AGGT-ATT-TCGTCAATCG--GAC-AAT-G--T-GATG-GAGT-GGCCAA-GG--GATTT-ATCT-TCCGTA--CC-AAATGAc
gi|27                         :  tGAGTGAAAA--CAACAA-C-CACG-TT-GCTATGAT----------A-AGAACATTTTA-AC-CTTA----TAT-T--AGGT-ATc
gi|28                         : tcGAGTGAAA---CAACAA-C-CACG-CT-GCTA---T------A---A-GAAA-ATGTGA-GC-CTTA----TAT-T--AGGT-A
gi|29                         : tcGAGTGAAAA--CTACAA-C-CACG-TT-GCTACGAT------A---A-GAAA-ATTTGA-G
gi|3                          :   cAGTGAAAA-CCG-CAA-CGCACC-TT-GCTAAGTT------A---A-GAAA-ATTTAA-GC-TTTA----TAATT--AGGTTATT-TTGTCAATCG--GACGA-T-G--T-GATG-CAGT-GGCCAA-GG--GATTTTGTCT-TCCGTA--TC-AAATGATT---TA-T---TT----CACACAGG---ACTG-CT----C-A----T------A-------TTTTCC----------T-GC---AA---AAGTTT-GCCCCAGGTT-CAA-CCTAGGAAA--A--TGTGTGTATTT---------------T---T------------T----------------A--------------TTAGTATCCTAAATCT---TTACCA-TTATTGTA--TCA---G-A-TCAA-TTTG-TAAATATT--TCTTTTA--A--AAC---CCCT---CCT---TCA-TT-CT-AACAA----AAGTTTTTTCTTGCCAATGTTCGAA---A-T-ATAATTTTAC-TA---TGAT-CCGA---AAA---AAAA-T-G-TTGTG-CA-TGAG----AT-CA-T-A--TGT--TGTGCATGAT-AAAACCGGTTGT--GC--T--GAA-----GA-------TTA-------GAAGTA-----A---CCTG--CGGAAAA----TA-----CGTCAAATGGG-CC-A-T-TGAACGA-ATTAATGACT-----TATTATTTAGCAAGG-ATCTTCCTTT--TCG-T--CTAACT-CAT----TTTCA--TTGGACAA-TTTCGT-AAAGC-A--GT---TTTAtct
gi|9                          :     GTGAAAG-ACC-CAG-A-CATGCTT-GCTTAGAT------A---A-GAAA-ATTTGAAGC-TTTAAATTTA--G--GGGT-ATTATCGTCAATCG--GACGA-T-G--T-GATG-CAGT-GGCTAT-GG--GATTT-GTCT-TCCGTA--CC-AA-TGATT---TA-TACTTT----CATACAGG---ACTGGCT----C-A----T------T-------CTTACC----------T-AC---A-----ATCTTTGCCCATGGTT-CA--CCTAGGGAA--A--GT-GTGCATTT---------------TAATT------------T----------------GTAT-----------C-------------CTAATTTAACCATTAT-GTA--TCA--CA-A-TCAA-TCTG-TAAATATT--CTTTTTA--A--ACCT--CGC----C-T---TCA-TT-CT-TACAA----A-GA-TTTTATTGCCAATGT--TAATAAA-T-ATAATGTTAC-CA---TGAC-CTGA---AAAG--AA
gi|15                         :       tcAAT-ACAACAA-C-CACG-TT-GCTAAGTT------G---A-GAAA-ATTTGA-GC-TTTA----TAT-T--AGGC-ATT-TCGTGAATCG--GACG-AT-G--T-GATG-CAGT-GGCCAA-GG--AATTT-GTCT-TCCGTA--CC-AAATGATT---TA-T---TTCCGGCATACAGA---ACTG-CT----T-A----T------AT------TTT-CC----------T-GC---AG---A
gi|19                         :      gattgA-ACAACAAAC-CACG-TTTGCTAAGTTTATATTAGTTA-AGAAAATTTT--GC-TTTA----TAA-T--AGGT-ATT-TCGTCAATCG--GAC-AAT-G--T-GATG-GAGT-GG-CAA-GG--GATTT-ATCT-TCCGTA---C-AAATGA
gi|8                          :                                                                                                 gCG--AATGAAT-GACT-GAT--ATGT-AGC-AA-GG--AATTT-TCCT-TTC---------AATAACT---CATT---TT----CAT--TGG---AC-G---------------------A-------TTT-TC------------GC---AGAGCAAGTTTT
gi|7                          : gaccgaaaaagaaaaatgttgtggcaatgagatgcatatctgttgtgcatgagaaaaccgttgtgccatgagaagagaaattttaaggatgaaaaaaccagcggaaaatacgccaaatgggccaaatgaa-GG--AATTTTGTCTATCCGTAGCCC-AAATGAAT---TA-A---TT----CAGACAGATACACTG-TTATGAC-ACATGT------A-------TTT-CCCACTCTGTATT-GCACAAG---AAGTTTTagacacttaaaattatgaaacacctggttttaatgcaacaaataaacgatctttattacaaacattaatcaaccatatgcaatttatcgatgcaatcttttaatatcttgaatcaatataaag
gi|30                         :                                                                                                                                                                                                                                                      gcttaagttaagaactttgatagcttcctcatatgtgacattttattccatcccgcctgttgagcggattggaaggcggtgccacatg----------------A--------------C-------------CT---TTACCA-TTATTGTA--CCA--C--A-TCAA-TCTG-TAAATAttgacaaccctatccgctctcataaacttttatgagaaaatattgtttgcacttttaatgctcttgtgctctcatgaatttagtattattcataaatacacctccacaatcttatctacactcaatctgtcatactatatgtacatatttttttaatcctacctcccttaatttctgaacgatatgaactctctctcaccgctcgcataaaagttctacacatgaccgagaaaaagaaaaatggtgcgcatgatatcatatgttgtcgcgttatga
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                      tcttaaT---TTACCA-TTATTGTA--CCG--TG-A-TCAA-TCTG-TAAATATT--GTTTTTA--A--ACC---CCTC---C-T---TCA-TT-CT-TACAA----T-GA-TTTTATTTCCATTGT--GACTAAA-T-ATAATTTTAC-CG---TGAT-CCG
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                            T---TTGTCAATGGTT--A--CCAA-CGCA-TCAAATCTG--AAATATT--CTTTTTA--ATCAGC---CTCT---CCT---TCA-TT-CT-AACAA----A-TATTT---CTTCCAATGT--
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                              A-TATG-TACATATT---TTTTTA--A--TCCTACCTCC---C-T---TAA-TTTCTGAACGATATGA-ACTCTCTCTCACCGCT-C--GCATAAA-A----GTTCTACACA---TGA--CCGAGAAAAAG--AAAAAT-GGT-GCG-CA-TGAT----AT-CA-T-AT-
gi|26                         :                                                                                                                                      gcttaagttaagaactttgatagcttcctcatatgtgacattttattccatcccgcctgttgagcggattggaaggcggtgccacatgggaattttgtctatccgtagcccaaatgaattaattcagacagatacactgttatgacacatgtatttcccactctgtattgcacaagaagttttttgacaaccctatccgctctcataaacttttatgagaaaatattgtttgcacttttaatgctcttgtgctctcatgaatttagtattattcataaatacacctccacaatcttatctacactcaatctgtcatact---C-T---TCA-TC-CT-AACAA----A-GATTTT-CTTCCCTATGT--GTATAAA-T-ATAATTTTAT-CA---TGAT-CCgttgtcgcgttatga
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccctc---TCA-TT-CT-AACAA----A-GATTTT-CTTTCCAATGT--GACTAAA-T-ATAAGTTTAC-CA---TGAT-CCGA---AAAG--AAAA-TGG-T-GTG-CA-TGAT----AT-CG-T-AT-
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    A-CCGA---AAAAGAAAAA-T-G-TTGTGGCAATGAG----ATGCA-T-ATCTGT--TGTGCATGAG-AAAACCG-TTGT--GCCATGAGAA-----GAGAA-ATTTTA--AGGATGAAAAA-----A---CCAG--CGGAAAA----TA-----CGCCAAATGGG-CCAA-A-TGAACGA-ATGAATGACT-----GA-TATGTAGCAAGGAATTTTCC-TT--TCA----ATAACT-CAT----TTTCA--TTGGACGATTTTCGC-AGAGCAA--GT---TTTAGACACTTAAAATTATG-A-A---ACACCTG-------GTTTTAATGCA--ACA-A-ATAAA---CGATCTTTATTACAAACATTA-ATCAACCATA------TGCAATTTATCGATGCAA-TCTTTTAAT--------ATCTTGAATCAATATAAAGg
gi|31                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gTAACT-CAT----TTTCA--TTGGACGA-TTTCGC-AGAGC-A--GT---TTT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCGC-AAAGC-A--GT---TTTAGA-ACTTAG--TT-TTGA-A---GCACTT---------------TG---------------------T-TTTATTACAAACTATA-ATCAA-CACA------TGC-ATTTATCGATGCAAGGCTTT--AT--------GT-TTGAATCAATATAAAGGA
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AT-TCTATTACAAGCTATA-AACAA-CACAAAGTCATGC-ATTTATCGATGCAA-TCTTT--AT--------AT-TTGtttatatatgggtttaaacattctatctagctactttgcattttccgtatggggccgacccccttttttcttagttaccctatgtgttttcggttaaatggataacttaaatttgttgttttatttcatgtattttaagtatcaaaataaaaatatgtatactttccaaccatgaatcgcattttgtaaggtttgtactttta
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 tA------TGC-ATTTATCGATGCAAGGCTTT--ATGTTTCACAGT-TTGAATCAATATAAAG

Unaligned ( gi|13 ): TATATATGGATTTAAACATTCTACCTAGCTTACATGTACTTTGCATTTTCCCTATGTTTTTCGTTAAATGGATACTTAAATGTTGTTTTATTTCATCTACTTTAAGTATCAAAATAAAAATATTATAGACTTCCAACATGAATCGCATTTTTGGTAAGATTTTACTTTCAACAG
Unaligned ( gi|14 ): TATATATATGGATTTAAACATTCTACCTAGCTACATGTACTTTGCATTTTCCCTATGTGTTTTCGATTAAATGGATACTTAAATGTTGTTTTATTTCATCTATTTTAAGTATCAAAATAAAAATATGTAGACTTTCCAACCATGAATCGCATTTTGTAAGATTTTTACTTT
Unaligned ( gi|16 ): TTCTCCCTTAATTTTCCTATATGCTTTTTATTTAAATGGAATAATTTAAATTCGATTCTATTTTATGTATTTTAAGTTATGAAAATAAAAGGATGTAGACTTTCCAATCATGAAACGCATTATTGCAAGATTTTCACATTTTACA
Unaligned ( gi|17 ): AATATAAAGGATTTATATTCTAACTAGCTACTTTGCATTTTCCGTATGGGGTCGACTCTTTTTTCTTATTCCCGATGTGTTTTCGATTAAATGGATAACTTAAATTTGATGTTTTATATCATGTACTTTAAATATCA
Unaligned ( gi|21 ): TTTGTTGTTTCATTTCATGTATTTTAAGTATCATAATAAAAATACAACAAGTATGTAGACTTTCCAACCATGAATCGCATTGTGTAAGATTTG

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                 111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
lowQualScore                  :                                       2222222222                               1111111            1111111111                1                                                                  111                        33333333333333333333333333333     1  2222222222                                                       333333333333333333333333333333333333333333333333333333333333333333333333333333                                                                                                                                                                                                    11111                                        111111          222           11111111   111       22222222222                                     11111               1               222          1111               1                  111      1    1      11   22222       77777777777777777777777777777777777777                            222222                    22    11  22222222                     
lowQualScore                  :           222      5 2    2  2    2 1 1111111111      2 2     55  2   444 5555 8888888 2  2 2   3 3333333333         44     1 6 3    333    3     555 3  77     6    3      44  6      555     000  7777       7777    3  00000000000000000000000000000 55  0  0000000000 3  666 4                 4   4        66  666         555555555555555555555555555555555555555555555555555555555555555555555555555555  666   3  7         44   77  3 3    6    6        77       44 555   555  666   555   2  2  2     6666 3  9   2           44  4   55            3 666   3      777    55    4  1    8  4   4   4  4 99999   5   5       5            77  5       555555    5     555           99999999   000       99999999999           5 77 5        5           44444 1    1        5          99   333      5   2222     77        5      5     6 99  111      0    0  3   66   55555       11111111111111111111111111111111111111  8 1              8     8  333333     8              11    11  99999999  8                  
lowQualScore                  :           ...      . .    .  .    . . ..........      . .     ..  .   ... .... ....... .  . .   . ..........         ..     . . .    ...    .     ... .  ..     .    .      ..  .      ...     ...  ....       ....    .  ............................. ..  .  .......... .  ... .                 .   .        ..  ...         ..............................................................................  ...   .  .         ..   ..  . .    .    .        ..       .. ...   ...  ...   ...   .  .  .     .... .  .   .           ..  .   ..            . ...   .      ...    ..    .  .    .  .   .   .  . .....   .   .       .            ..  .       ......    .     ...           ........   ...       ...........           . .. .        .           ..... .    .        .          ..   ...      .   ....     ..        .      .     . ..  ...      .    .  .   ..   .....       ......................................  . .              .     .  ......     .              ..    ..  ........  .                  
lowQualScore                  :           999      3 7    7  7    1 9 9999999999      5 5     99  7   777 7777 8888888 7  7 7   1 5555555555         22     8 2 1    888    1     444 1  33     2    1      22  2      444     000  7777       3333    6  44444444444444444444444444444 00  9  9999999999 6  444 3                 4   4        11  111         111111111111111111111111111111111111111111111111111111111111111111111111111111  444   6  3         66   99  3 3    2    2        99       66 888   444  000   000   9  9  9     5555 1  8   4           66  5   00            6 444   6      000    55    4  8    9  4   4   4  4 00000   0   0       7            99  7       000000    7     666           33333333   000       00000000000           7 99 7        7           33333 7    6        5          22   333      7   1111     99        5      7     7 22  777      0    0  2   55   00000       22222222222222222222222222222222222222  0 4              0     0  000000     0              00    00  00000000  0                  
consensus                     :   GAGTGAAA-A-CAACAA-C-CACG-TT-GCTAAGTT----------AAGAAA-A-TTTGA--GC-TTT---A----T-A--T--A-GG-T-ATT-T----------CGTCAATCG--GACGAAT-G-TGAT-G-CAGT-GGCCA---A-GG--AATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TT----CATACAGA---ACTG-CT--------T----AT------A-------T--TT-CC----------T-GC---AGAAGTTTTGCCCCAGGTT-CAA-CCTAGGGA--AA-TGTGTGCATTT---------------T---T------------T----------------A--------------C-------------CT---TTA-CC-ATTATTGTA--CCA--CG-A-TCAA-TCTG-TAAATATT--CTTTTTA--A---ACC---CC--TCCT---TCA-TT-CT-AACAA----A-GATTTTTCTTTCCAATGT--GANTAA--ATATAATTTTAC-C---ATG-ATCCGA---AAAG--AAAA-TGTTGTG-CA-TGA-GAT-CA-T-AT--TGT-TGT-GCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----GAGAA-GTTTTA--GGATGAAAAAA---C----CTG---CGGAAAA----TA-----CGCCAAATGGG-C--C-ATTGAACG-AATGAATGACT-----GATTATTTAGCAAGGAATCTTCCTTT--TCA--NATAACT-CAT----TTTCA--TTGGACGATTTTCGC-AGAGC-A--GT---TTTAGA-ACTT-AAATTTN-GAA-----ACACCTG-------G-TTT--ATGC---AC--A-AATAAA---CGAT-TCTATTACAAACTATA-ATCAA-CA------CATGC-ATTTATCGATGCAAGTCTTT--AT--------AT-TTGAATCAATATAAAGGA
Reference ( family-439 )      :   GAGTGAAA-A-CAACAA-C-CACG-TT-GCTAAGNT----------AAGAAA-A-TTTGA--GC-TTT---A----T-A--T--A-GG-T-ATT-T----------CGTCAATCG--GACGAAT-G-TGAT-G-CAGT-GGCCA---A-GG--AATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TT----CATACAGA---ACTG-CT--------T----AT------A-------T--TT-CC----------T-GC---AGAAGTTTTGCCCCAGGTT-CAA-CCTAGGGA--AA-TNTGTGCATTT---------------T---T------------T----------------A--------------C-------------CT---TTA-CC-ATTATTGTA--CCA--CG-A-TCAA-TCTG-TAAATATT--CTTTTTA--A---ACC---CC--CCCT---TCA-TT-CT-AACAA----A-GATTTTTCTTTCCAATGT--GANTAA--ATATAATTTTAC-C---ATG-ATCCGA---AAAG--AAAA-TGTTGTG-CA-TGA-GAT-CA-T-AT--TGT-TGT-GCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----GAGAA-GTTTTA--GGATGAAAAAA---C----CTG---CGGAAAA----TA-----CGCCAAATGGG-C--C-ATTGAACG-AATGAATGACT-----GATTATTTAGCAAGGAATCTTCCTTT--TCA--NATAACT-CAT----TTTCA--TTGGACGATTTTCGC-AAAGC-A--GT---TTTAGA-ACTT-AAATTTG-GAA-----ACACTTG-------G-TTT--ATGC---AC--A-AATAAA---CGAT-TCTATTACAAACTATA-ATCAA-CA------CATGC-ATTTATCGATGCAAGNCTTT--AT--------GT-TTGAATCAATATAAAGGA
gi|1                          :   GATTGAAA-A-GAAAAC-C-CACG-TT-GC-AAGTT----------AAGAAA-AATTTGA--GC-TT----A----T-A--TTAA-GG-T-ATT-T-----------GTAAATCGCGGACGAAT-G-TGAT-GACAGTTGGCCA---A-GGGAAATTT-GTCT-TCCGTA--CCCAAATGA---TTTATA--TT----CATACAGA---ACTG-CT--------T----ATCACACTA-------T--TT-TCCT--------T-GC---AGAAATTTTGCCACGGGTT-CAA-CCTAGGGA--AA-TATGTGCATTTATGAAATTAGGTATTC---T------------T----------------AAAA-----------C-------------CG---TTA-CA-ATTATTGTAAACCAGACG-A-TCAA-TCTGATGAATATT--CTTTTTA--A---ACC---CT--C--TAGATCA-TT-CT-AAAAA----A-GATTTTCTTTTCGCATGT--GACTAAATATATAATTTTAC-CCGGATGAATCCGA---AAAG--AAAA-TGTTGTGACA-TGA-GAT-CAGT-CA--TGT-TGT-GCATGAGAAAAACTGGTTGTGGGC-ATAAGAAGAATGGAGAAGGTTTTACTGGATGAAAAAA---CAACACTAGCTCGGAAAAAGAGCAAAGACCGAAAAATGGGAC--C-ATCGAAGG-AATGAATGACTACGACAATTATTT-GCAGGG--TCTTCCTTTTATCAGTAATAATTACATGATATATCA---TGGACGATTTT-GCAAAAGC-AGGGTTTATTTAGA-ACTC-TAATTTT-GAACAGTTACATTCGTATTATAA-TTTA-ATGCTGGACAGA-GATAAAACCTAAT-TCTATTACAAACTATACATCAA-C
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tTCGC-AAAGC-A--GT---TTTAGA-ACTT-AG-TTTT-GAA-----GCACTTT-------G-TTT-------------------------------TATTACAAACTATA-ATCAA-CA------CATGC-ATTTATCGATGCAAGGCTTT--AT--------GT-TTGAATCAATATAAAGGA
gi|11                         :   GAGGGAAA-A-CAACAAAC-CACG-TT-GCTAAGTT----------AAGAAA-A-GTTGA--GC-TTT---A----T-AT-T--A-GGTT-ATG-T----------CATCAATC---GATG-AT-GTTGATGG-CAG--GGCCA---ACGG--AATTT-GTCT-TCCGTA--CC-AAATGATTCTTTA----TT----CATACAG----ACTG-GC--------TAATAAT------A-------TTCTT-CC----------T-GC---GGAAGTTTTGCCCCAGGTA-C-A-CCTAGGGAATAA-TA---GTATTC---------------C---T------------A----------------A--------------C-------------CT---TTA-CCTATTATTGTA---CA--CG-ATTCAA-TCTG-TAAATATTTATTTTTTAATA---ACC---CCTTCACT---TCA-TT-CT-AACAA----A-TATTTTtttatatatgggtttaaacattctatctagctactttgcattttccgtatggggccgacccccttttttcttagttaccctatgtgttttcggttaaatggataacttaaatttgttgttttatttcatgtattttaagtatcaaaataaaaatatgtatactttccaaccatgaatcgcattttgtaaggtttgtactttta
gi|12                         : gcGAGTGAAA-A-CTACAA-C-CACG-AT-GCTATGAT----------AAGAAA-A-TTTGA--GCCTTT---A----T-A--TT-A-AG-T-ATT-T----------CGTCAATCC--GACGA-T-G-TGAT-G-CAGT-GGCCA---A-GGG-AATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TT----CATACAGA---ACTG-CT--------TT---AT------A-------T--TTTCC----------T-GC---ACAAGTTTTGCCCCAGGTTTCAA-CCTAGGGA--A----TGTGCATTT---------------T---T------------TGATTAGTATTTCTTTAA--------------C-------------CT---TTA-CC--TTATTGTA--CCA--CG-A-TCAACTCTG-TAAAT-TT--CTTTTTA--T---ATC---CC--TCCT---TCACTT-CT-c
gi|15                         :  cGATTGAAT-A-CAACAA-C-CACG-TT-GCTAAGTT----------GAGAAA-A-TTTGA--GC-TTT---A----T-AT-T--A-GG-C-ATT-T----------CGTGAATCG--GACG-AT-G-TGAT-G-CAGT-GGCCA---A-GG--AATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TTCCGGCATACAGA---ACTG-CT--------T----AT------AT------T--TT-CC----------T-GC---AGA
gi|18                         :   GAGTGAAA-A-CAACAA-C-CACG-TT-GCTAAGTTTATATTAGTTAAGAAA-A-TTTGA--GC-TTT---A----TAA--T--A-GG-T-ATT-T----------CGTCAATCG--GAC-AAT-G-TGAT-G-GAGT-GGCCA---A-GG--GATTT-ATCT-TCCGTA--CC-AAATGA---
gi|19                         :         tA-A-CAACAAAC-CACG-TTTGCTAAGTTTATATTAGTTAAGAAA-A-TTTT---GC-TTT---A----TAA--T--A-GG-T-ATT-T----------CGTCAATCG--GAC-AAT-G-TGAT-G-GAGT-GG-CA---A-GG--GATTT-ATCT-TCCGTA---C-AAATGA---c
gi|2                          :  gGAGTGAAA-AACAACAA-C-CACG-TT-GCTAAGTT----------AAAAAAGA-TTTGA--GC-TTT---G----T-A--T--A-GG-T-ATT-T----------CGTCAATCG--GACGAAT-G-TGAT---TAGT-GGCCA---A-GG--AATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TT----CATACAGG---ACTG-CT--------C----AT------A-------T--TT-CC----------T-GC---AGAAGTTTTGCCCCAGGTT-CAA-CCTAGGG---AA-TTGGTGCATTT---------------T---T------------T----------------A--------------C-------------CT---TTA-CCAATTATTGTA--CCA--CG-A-CCAA-TCTG-TAAATATT--CTTTTTA--A---ACC---CG--CTCT---TCA-TT-CT-AACAA----A-GATTTTTCTTTCCAATGT--GAATAA--AAATAGTTTTAC-C---TTG-AACCGA---AAAG--AAAA-TG-TGTG-CA-TGA-GAT-CA-T-AT--TGTATGT-GCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----GAGAA-ATTTTA--AGATGAAAAAA---C----CAG---CGGAAAA----TA-----CGCCAAATGGG-C--C-AATGAACG--ATGAATGACT-----GATTATGTAGCAAGGAATCTTCCTTT--TCA--GATAACT-CAT----TTTCA--TTGGACGATTTTCGC-AGAGC-A--GT---TTTAGA-ACTTAAAATTTG-AAA-----ACACCTG-------GTTTT--ATGC---AC--AGAATAAA---CGAT-TTTATTACAAACTATA-ATCAA-CA------TATGC-ATTTATCGATGCAA-TCTTT--AT--------AT-TTGAATCAATATAAAGGA
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                T---TTA-CC-ATTATTGTA--CCG--TG-A-TCAA-TCTG-TAAATATT--GTTTTTA--A---ACC---CC--TCCT---TCA-TT-CT-TACAA----T-GA-TTTTATTTCCATTGT--GACTAA--ATATAATTTTAC-C---GTG-ATCCG
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ---TCA-TT-CT-AACAA----A-GATTTT-CTTTCCAATGT--GACTAA--ATATAAGTTTAC-C---ATG-ATCCGA---AAAG--AAAA-TGGTGTG-CA-TGA-TAT-CG-T-AT--
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                  TA--CCAA-CGCA-TCAAATCTG--AAATATT--CTTTTTA--ATCAGCC---TC--TCCT---TCA-TT-CT-AACAA----A-TATTT---CTTCCAATGT--g
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tttgtcaatggt------CATGC-ATTTATCGATGCAAGGCTTT--ATGTTTCACAGT-TTGAATCAATATAAAG
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AT-TCTATTACAAGCTATA-AACAA-CACAAAGTCATGC-ATTTATCGATGCAA-TCTTT--AT--------AT-TTGtatatacatatatatgggtttaaacattctatc
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tC---CC--TCCT---TCA-TC-CT-AACAA----A-GATTTT-CTTCCCTATGT--GTATAA--ATATAATTTTAT-C---ATG-ATCC
gi|27                         :   GAGTGAAA-A-CAACAA-C-CACG-TT-GCTATGAT----------AAGAAC-A-TTTTA--AC-CTT---A----T-AT-T--A-GG-T-AT
gi|28                         : tcGAGTGAAA---CAACAA-C-CACG-CT-GCTA---T----------AAGAAA-A-TGTGA--GC-CTT---A----T-AT-T--A-GG-T-A
gi|29                         : tcGAGTGAAA-A-CTACAA-C-CACG-TT-GCTACGAT----------AAGAAA-A-TTTGA--G
gi|3                          :   cAGTGAAA-A-CCGCAA-CGCACC-TT-GCTAAGTT----------AAGAAA-A-TTTAA--GC-TTT---A----T-AATT--A-GG-TTATT-T----------TGTCAATCG--GACGA-T-G-TGAT-G-CAGT-GGCCA---A-GG--GATTTTGTCT-TCCGTA--TC-AAATGA---TTTAT---TT----CACACAGG---ACTG-CT--------C----AT------A-------T--TTTCC----------T-GC---AAAAGTTT-GCCCCAGGTT-CAA-CCTAGGAA--AA-TGTGTGTATTT---------------T---T------------T----------------A--------------TTAGTATCCTAAATCT---TTA-CC-ATTATTGTA--TCA---G-A-TCAA-TTTG-TAAATATTT-CTTTTAA--A---ACC---CC--TCCT---TCA-TT-CT-AACAA----AAGTTTTTTCTTGCCAATGTTCGA---A--ATATAATTTTAC-T---ATG-ATCCGA---AAA---AAAA-TGTTGTG-CA-TGA-GAT-CA-T-AT---GT-TGT-GCATGAT-AAAACCGGTTGT--GC--TGA---------AGA-----TTA--G----AAGTAA---C----CTG---CGGAAAA----TA-----CGTCAAATGGG-C--C-ATTGAACG-AATTAATGACT-----TATTATTTAGCAAGG-ATCTTCCTTT--TCG--TCTAACT-CAT----TTTCA--TTGGACAA-TTTCGT-AAAGC-A--GT---TTTAtct
gi|30                         :                                                                                                                                                                                                                                                                                                                                                                  ----------------A--------------C-------------CT---TTA-CC-ATTATTGTA--CCA--C--A-TCAA-TCTG-TAAATA
gi|31                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     tcttaaTAACT-CAT----TTTCA--TTGGACGA-TTTCGC-AGAGC-A--GT---TTT
gi|4                          :   GAGTGAAA-A-CAACAA-T-CACG-TT-GCTATGAT----------AAGAAA-A-TTTGA--GC-CTT---A----T----T----GG-T-ATT-T----------CGTCAATCG--GACGA-T-G-TGAT-G-CAGT-GGCCA---A-GG--AATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TT----CATACAGA---ACTG-CT--------T----AT------ACGTGTATT--TT-CC----------T-GC---A------------CAAGTT-CAA-CCTAGGGA--AA-TGTGTGCATTT---------------T---TGATTAGTATTCTT----------------AAA------------C-------------CT---TTA-CC-ATTATTGTA--CCA--CG-A-TCAA-TCTG-TAAATATT--CTTTTTA--A---ACC---CC--TCCT---TCA-TT-CT-AACAA----A-GA-TTTTCTCTCCAATGT--GACTAA--ATATAAGTTTAC-C---ATG-ATCCGA---AAAG--AAAA-TGTTGTG-CA-TGA-GAT-CG-T-A---TGT-TGT-GCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----TAGAA-GTTTT---GGATGAAAAAA---C----CTG---CGGAAAA----AAAC---CGCCAAATGGG-CCAC-ATTGAACGAAATGAA-GACT-----G-TTA-TTAGAAAGGAATTTTACTTT--TCAT-AATAACT-CAT----TTTCAGTTTGGACGA-TTTCGC-A
gi|5                          :  cGAGTGAAA---CAACAA-C--ACG-T--GCTATGAT----------AAGAAA-A-TTTGA--G--TTT---A----T----T--A-GG-T-ATT-T----------CGTCAAT-G--GACGATTTG-TGAT---CAGT-G-CCA---A-GG--AATT--GTCT--CCGTA--CCCAAATGA---TTTAT---TT----CA-ACAGA---ACTG-CTA-------T----AT--------------T--TT-CC----------T-GC---CACAGTTTT-CCCCA--TT-CAAATCTAGGAA--AAATTTGTGCACTT---------------T---TGATTAAGTCT--T----------------A--------------A-------------CC---TTA-CC-ATTATTGTA--CCA--CG-A-TCAA-TCTGTTAAATATT--C-TTTTA--A---ACC---CC--TCCT---TCA-TT-CT-AACAA----A-GA-TTTTCTTTCCAATGT--GACT-G--ATATAA-TTTAC-C---ATG-ATCCAA---AAAG--AAAA-TGTTGTG-CA-TGAGGAT-CA-T-CA--TGT-TGTGGCAGGAG-AAAACCGA-TGT--GC-ATGAGAA-----TAGAA-GTTTT---GGATGAAAAAA--------CTG---CGAAAAA----TA-----CGCCAAATGGC-C--C-ATTGAACG-AATGAATGACT-----GTTTATATAGCAATG-ATCTCCCTTT--TCA--TATAACT-CAT----TTTCA--
gi|6                          :  cGAGTGAAA-A-CAACAA-A-CGCG-TT-GCTCAGTA----------AAGAAA-A-TTTGA--GA-TAT---A----T-A--TG-A-GG-T-ATT-T----------CGTTAATCA--GACGA-T-G-TGAT-G-CAGT-GGCCA---A-GG--GATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TT----CATACAGG---ACTG-CT--------T----AT------A-------T--TT-TC----------TTGC---AGAAGTTTTGTCCCAGGTT-CAA-CCCAGGGA--AA-TATGTGCATTT---------------T---T------------T----------------ATTAGTATTCCTAAAC-------------TT---TTA-CC-ATTATTGTA--CCA--CG-A-TCAA-TCTG-TAAATATT--CTTTTTA--A---ACC---CC--TCCT---TCA-TT-CT-AACAA----A-GA-TTTTCTTTCCAATGT--GAATAA--ATACAATTTTAC-C---ATG-ATCCGA---AAAG--AAAA-AGTTGTG-CA-TGA-GAT-CA-TAATTATGT-TGT-GCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----GAGAA-GTTTT---GGATGAAAAAAACCC----CTG---CGGA------------------AAATGGG-C--C-ATT----G-AATGAATGACT-----AATTATTTAGCAAG
gi|7                          :                                 TAAGTT----------AAGAAC---TTTGATAGC-TTCCTCA----T-A--T--GTGA-C-ATT-TTATTCCATCCCGCCTGTTG--AGCGGATTG-GAAG-G-CGGT-G-CCACATG-GG--AATTTTGTCTATCCGTAGCCC-AAATGA---ATTAA---TT----CAGACAGATACACTG-TTATGACACAT----GT------A-------T--TT-CCCACTCTGTATT-GCACAAGAAGTTTTa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                gctA-TATG-TACATATT---TTTTTA--A---TCCTACCT--CCCT---TAA-TTTCTGAACGATATGA-ACTCTCTCTCACCGCT-C--GCATAA--A---AGTTCTACAC---ATG-A-CCGAGAAAAAG--AAAAATGGTGCG-CA-TGA-TAT-CA-T-A---TGT-TGT-ttgacaaccctatccgctctcataaacttttatgagaaaatattgtttgcacttttaatgctcttgtgctctcatgaatttagtattattcataaatacacctccacaatcttatctacactcaatctgtcatactatatgtacatatttttttaatcctacctcccttaatttctgaacgatatgaactctctctcaccgctcgcataaaagttctacacatgaccgagaaaaagaaaaatggtgcgcatgatatcatatgttgtcgcgttatga
gi|8                          :                                                                                                                                                                                                                                           gcttaagttaagaactttgatagcttcctcatatgtgacattttattccatcccgcctgttgagcggattggaaggcggtgccacatgggaattttgtctatccgtagcccaaatgaattaattcagacagatacactgttatgacacatgtatttcccactctgtattgcacaagaagttttttgacaaccctatccgctctcataaacttttatgagaaaatattgtttgcacttttaatgctcttgtgctctcatgaatttagtattattcataaatacacctccacaatcttatctacactcaatctgtcatactCCGA---AAAAGAAAAA-TGTTGTGGCAATGA-GATGCA-T-ATC-TGT-TGT-GCATGAG-AAAACCG-TTGT--GCCATGAGAA-----GAGAA-ATTTTAA-GGATGAAAAAA---C----CAG---CGGAAAA----TA-----CGCCAAATGGG-C--CAAATGAACG-AATGAATGACT-----GA-TATGTAGCAAGGAATTTTCC-TT--TCA---ATAACT-CAT----TTTCA--TTGGACGATTTTCGC-AGAGCAA--GT---TTTAGACACTT-AAAATTATGAA-----ACACCTG-------G-TTTTAATGCA--AC--A-AATAAA---CGATCTTTATTACAAACATTA-ATCAACCA------TATGCAATTTATCGATGCAA-TCTTTTAAT--------ATCTTGAATCAATATAAAGcgcgttatga
gi|9                          :   gaGTGAAAGA-CC-CAG-A-CATGCTT-GCTTAGAT----------AAGAAA-A-TTTGAA-GC-TTT---AAATTT-A--G--G-GG-T-ATTAT----------CGTCAATCG--GACGA-T-G-TGAT-G-CAGT-GGCTA---T-GG--GATTT-GTCT-TCCGTA--CC-AA-TGA---TTTATACTTT----CATACAGG---ACTGGCT--------C----AT------T-------C--TTACC----------T-AC---A--ATCTTTGCCCATGGTT-CA--CCTAGGGA--AA--GTGTGCATTT---------------TAATT------------T----------------GTAT-----------C-------------CTAATTTAACC-ATTAT-GTA--TCA--CA-A-TCAA-TCTG-TAAATATT--CTTTTTA--A---ACC---TC--GCCT---TCA-TT-CT-TACAA----A-GA-TTTTATTGCCAATGT--TAATAA--ATATAATGTTAC-C---ATG-ACCTGA---AAAG--AA

Unaligned ( gi|13 ): TATATATGGATTTAAACATTCTACCTAGCTTACATGTACTTTGCATTTTCCCTATGTTTTTCGTTAAATGGATACTTAAATGTTGTTTTATTTCATCTACTTTAAGTATCAAAATAAAAATATTATAGACTTCCAACATGAATCGCATTTTTGGTAAGATTTTACTTTCAACAG
Unaligned ( gi|14 ): TATATATATGGATTTAAACATTCTACCTAGCTACATGTACTTTGCATTTTCCCTATGTGTTTTCGATTAAATGGATACTTAAATGTTGTTTTATTTCATCTATTTTAAGTATCAAAATAAAAATATGTAGACTTTCCAACCATGAATCGCATTTTGTAAGATTTTTACTTT
Unaligned ( gi|16 ): TTCTCCCTTAATTTTCCTATATGCTTTTTATTTAAATGGAATAATTTAAATTCGATTCTATTTTATGTATTTTAAGTTATGAAAATAAAAGGATGTAGACTTTCCAATCATGAAACGCATTATTGCAAGATTTTCACATTTTACA
Unaligned ( gi|17 ): AATATAAAGGATTTATATTCTAACTAGCTACTTTGCATTTTCCGTATGGGGTCGACTCTTTTTTCTTATTCCCGATGTGTTTTCGATTAAATGGATAACTTAAATTTGATGTTTTATATCATGTACTTTAAATATCA
Unaligned ( gi|21 ): TTTGTTGTTTCATTTCATGTATTTTAAGTATCATAATAAAAATACAACAAGTATGTAGACTTTCCAACCATGAATCGCATTGTGTAAGATTTG

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                  11111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
lowQualScore                  :                                       2222222222                               1111111            1111111111               11                                                                  111                         33333333333333333333333333333        2222222222                                                       33333333333333333333333333333333333333333333333333333333333333333333333333                                                                                                                                                                                                    11111                                        111111          222           11111111   111       22222222222                                     11111               1               222          1111               1                  111      1    2          22222       77777777777777777777777777777777777777                            222222                    22    11  22222222                     
lowQualScore                  :           222      5 2    2  2    2 2 1111111111      2 2     55  2   444 5555 8888888 2  2 2   3 3333333333         44    11 6 3    333    3     555 6  44     6    3      44  6      555     000  7777       7777    3 3 00000000000000000000000000000 55  7  0000000000 3  666 4               4     4        66  6666        33333333333333333333333333333333333333333333333333333333333333333333333333  666   3  7        44   44 3  3 3    6    6        77       44 555   44    44  555   66    2     6666 3  9   2           44  4   55            3 666   3      777    55    4  1    8  4   4   4  4 99999   5   5       5            77  5       555555    5     555           99999999   000       99999999999           5 77 5        5           44444 1    1        5          99   333      5   2222     77        5      5     6 99  111      0    0  3   1   55555       11111111111111111111111111111111111111  8 1              8     8  333333     8              00    11  99999999  8                  
lowQualScore                  :           ...      . .    .  .    . . ..........      . .     ..  .   ... .... ....... .  . .   . ..........         ..    .. . .    ...    .     ... .  ..     .    .      ..  .      ...     ...  ....       ....    . . ............................. ..  .  .......... .  ... .               .     .        ..  ....        ..........................................................................  ...   .  .        ..   .. .  . .    .    .        ..       .. ...   ..    ..  ...   ..    .     .... .  .   .           ..  .   ..            . ...   .      ...    ..    .  .    .  .   .   .  . .....   .   .       .            ..  .       ......    .     ...           ........   ...       ...........           . .. .        .           ..... .    .        .          ..   ...      .   ....     ..        .      .     . ..  ...      .    .  .   .   .....       ......................................  . .              .     .  ......     .              ..    ..  ........  .                  
lowQualScore                  :           999      3 7    7  7    1 2 9999999999      5 5     99  7   777 7777 8888888 7  7 7   1 5555555555         22    55 2 1    888    1     444 2  22     2    1      22  2      444     000  7777       3333    6 6 44444444444444444444444444444 00  3  9999999999 6  444 3               4     4        11  3333        11111111111111111111111111111111111111111111111111111111111111111111111111  444   6  3        66   66 3  3 3    2    2        99       66 888   22    22  000   88    9     5555 1  8   4           66  5   00            6 444   6      000    55    4  8    9  4   4   4  4 00000   0   0       7            99  7       000000    7     666           33333333   000       00000000000           7 99 7        7           33333 7    6        5          22   333      7   1111     99        5      7     7 22  777      0    0  2   0   00000       22222222222222222222222222222222222222  0 4              0     0  000000     0              66    00  00000000  0                  
consensus                     :   GAGTGAAA-A-CAACAA-C-CACG-TT-GCTAAGTT----------AAGAAA-A-TTTGA--GC-TTT---A----T-A--T--A-GG-T-ATT-T----------CGTCAATCG--GACGAAT-G-TGAT-G-CAGT-GGCCA---A-GG--AATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TT----CATACAGA---ACTG-C-T--------T----AT------A-------T--TT-CC----------T-GC---AGAAGTTTTGCCCCAGG-TTCAA-CCTAGGGA--AA-TGTGTGCATTT-------------T---T----------T----------------A--------------C-------------CT---TTA-CC-ATTATTGT--ACC--A-CG-A-TCAA-TCTG-TAAATATT--CTTTTTA--A---ACC--CCTC--CT---TCA--TTCT-AACAA----A-GATTTTTCTTTCCAATGT--GANTAA--ATATAATTTTAC-C---ATG-ATCCGA---AAAG--AAAA-TGTTGTG-CA-TGA-GAT-CA-T-AT--TGT-TGT-GCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----GAGAA-GTTTTA--GGATGAAAAAA---C----CTG---CGGAAAA----TA-----CGCCAAATGGG-C--C-ATTGAACG-AATGAATGACT-----GATTATTTAGCAAGGAATCTTCCTTT--TCA--NATAACT-CAT----TTTCA--TTGGACGATTTTCGC-AGAGC-A--GT---TTTAGA-ACTTAAAATTTTGAA-----ACACCTG-------G-TTT--ATGC---AC--A-AATAAA---CGAT-TCTATTACAAACTATA-ATCAA-CA------CATGC-ATTTATCGATGCAAGTCTTT--AT--------AT-TTGAATCAATATAAAGGA
Reference ( family-439 )      :   GAGTGAAA-A-CAACAA-C-CACG-TT-GCTAAGTT----------AAGAAA-A-TTTGA--GC-TTT---A----T-A--T--A-GG-T-ATT-T----------CGTCAATCG--GACGAAT-G-TGAT-G-CAGT-GGCCA---A-GG--AATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TT----CATACAGA---ACTG-C-T--------T----AT------A-------T--TT-CC----------T-GC---AGAAGTTTTGCCCCAGG-TTCAA-CCTAGGGA--AA-TGTGTGCATTT-------------T---T----------T----------------A--------------C-------------CT---TTA-CC-ATTATTGT--ACC--A-CG-A-TCAA-TCTG-TAAATATT--CTTTTTA--A---ACC--CCTC--CT---TCA--TTCT-AACAA----A-GATTTTTCTTTCCAATGT--GANTAA--ATATAATTTTAC-C---ATG-ATCCGA---AAAG--AAAA-TGTTGTG-CA-TGA-GAT-CA-T-AT--TGT-TGT-GCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----GAGAA-GTTTTA--GGATGAAAAAA---C----CTG---CGGAAAA----TA-----CGCCAAATGGG-C--C-ATTGAACG-AATGAATGACT-----GATTATTTAGCAAGGAATCTTCCTTT--TCA--NATAACT-CAT----TTTCA--TTGGACGATTTTCGC-AGAGC-A--GT---TTTAGA-ACTT-AAATTTNGAA-----ACACCTG-------G-TTT--ATGC---AC--A-AATAAA---CGAT-TCTATTACAAACTATA-ATCAA-CA------CATGC-ATTTATCGATGCAAGTCTTT--AT--------AT-TTGAATCAATATAAAGGA
gi|1                          :   GATTGAAA-A-GAAAAC-C-CACG-TT-GC-AAGTT----------AAGAAA-AATTTGA--GC-TT----A----T-A--TTAA-GG-T-ATT-T-----------GTAAATCGCGGACGAAT-G-TGAT-GACAGTTGGCCA---A-GGGAAATTT-GTCT-TCCGTA--CCCAAATGA---TTTATA--TT----CATACAGA---ACTG-C-T--------T----ATCACACTA-------T--TT-TCCT--------T-GC---AGAAATTTTGCCACGGG-TTCAA-CCTAGGGA--AA-TATGTGCATTTATGAAATTAGGTAT---T----------CTTAAA-----------A--------------C-------------CG---TTA-CA-ATTATTGTAAACCAGA-CG-A-TCAA-TCTGATGAATATT--CTTTTTA--A---ACC--C--T--CTAGATCA--TTCT-AAAAA----A-GATTTTCTTTTCGCATGT--GACTAAATATATAATTTTAC-CCGGATGAATCCGA---AAAG--AAAA-TGTTGTGACA-TGA-GAT-CAGT-CA--TGT-TGT-GCATGAGAAAAACTGGTTGTGGGC-ATAAGAAGAATGGAGAAGGTTTTACTGGATGAAAAAA---CAACACTAGCTCGGAAAAAGAGCAAAGACCGAAAAATGGGAC--C-ATCGAAGG-AATGAATGACTACGACAATTATTT-GCAGGG--TCTTCCTTTTATCAGTAATAATTACATGATATATCA---TGGACGATTTT-GCAAAAGC-AGGGTTTATTTAGA-ACTC-TAATTTTGAACAGTTACATTCGTATTATAA-TTTA-ATGCTGGACAGA-GATAAAACCTAAT-TCTATTACAAACTATACATCAA-C
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tTCGC-AAAGC-A--GT---TTTAGA-ACTT-AG-TTTTGAA-----GCACTTT-------G-TTT-------------------------------TATTACAAACTATA-ATCAA-CA------CATGC-ATTTATCGATGCAAGGCTTT--AT--------GT-TTGAATCAATATAAAGGA
gi|11                         :   GAGGGAAA-A-CAACAAAC-CACG-TT-GCTAAGTT----------AAGAAA-A-GTTGA--GC-TTT---A----T-AT-T--A-GGTT-ATG-T----------CATCAATC---GATG-AT-GTTGATGG-CAG--GGCCA---ACGG--AATTT-GTCT-TCCGTA--CC-AAATGATTCTTTA----TT----CATACAG----ACTG-G-C--------TAATAAT------A-------TTCTT-CC----------T-GC---GGAAGTTTTGCCCCAGG-TAC-A-CCTAGGGAATAA-TA---GTATTC-------------C---T----------A----------------A--------------C-------------CT---TTA-CCTATTATTGT--A-C--A-CG-ATTCAA-TCTG-TAAATATTTATTTTTTAATA---ACC--CCTTCACT---TCA--TTCT-AACAA----A-TATTTTtttatatatgggtttaaacattctatctagctactttgcattttccgtatggggccgacccccttttttcttagttaccctatgtgttttcggttaaatggataacttaaatttgttgttttatttcatgtattttaagtatcaaaataaaaatatgtatactttccaaccatgaatcgcattttgtaaggtttgtactttta
gi|12                         : gcGAGTGAAA-A-CTACAA-C-CACG-AT-GCTATGAT----------AAGAAA-A-TTTGA--GCCTTT---A----T-A--TT-A-AG-T-ATT-T----------CGTCAATCC--GACG-AT-G-TGAT-G-CAGT-GGCCA---AGGG--AATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TT----CATACAGA---ACTG-CTT--------T----AT------AT------T--TT-CC----------T-GC---ACAAGTTTTGCCCCAGGTTTCAA-CCTAGGGA--A----TGTGCATTT-------------T---T----------TGATTAGTATTTCTTTAA--------------C-------------CT---TTA-CC--TTATTGT--ACC--A-CG-A-TCAACTCTG-TAAAT-TT--CTTTTTA--T---ATC--CCTC--CT---TCAC-TTCT-c
gi|15                         :  cGATTGAAT-A-CAACAA-C-CACG-TT-GCTAAGTT----------GAGAAA-A-TTTGA--GC-TTT---A----T-AT-T--A-GG-C-ATT-T----------CGTGAATCG--GACG-AT-G-TGAT-G-CAGT-GGCCA---A-GG--AATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TTCCGGCATACAGA---ACTG-C-T--------T----AT------AT------T--TT-CC----------T-GC---AGA
gi|18                         :   GAGTGAAA-A-CAACAA-C-CACG-TT-GCTAAGTTTATATTAGTTAAGAAA-A-TTTGA--GC-TTT---A----TAA--T--A-GG-T-ATT-T----------CGTCAATCG--GAC-AAT-G-TGAT-G-GAGT-GGCCA---A-GG--GATTT-ATCT-TCCGTA--CC-AAATGA---
gi|19                         :         tA-A-CAACAAAC-CACG-TTTGCTAAGTTTATATTAGTTAAGAAA-A-TTTT---GC-TTT---A----TAA--T--A-GG-T-ATT-T----------CGTCAATCG--GAC-AAT-G-TGAT-G-GAGT-GG-CA---A-GG--GATTT-ATCT-TCCGTA---C-AAATGA---c
gi|2                          :  gGAGTGAAA-AACAACAA-C-CACG-TT-GCTAAGTT----------AAAAAAGA-TTTGA--GC-TTT---G----T-A--T--A-GG-T-ATT-T----------CGTCAATCG--GACGAAT-G-TGAT---TAGT-GGCCA---A-GG--AATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TT----CATACAGG---ACTG-C-T--------C----AT------A-------T--TT-CC----------T-GC---AGAAGTTTTGCCCCAGG-TTCAA-CCTAGGGA--AT-TG-GTGCATTT-------------T---T----------T----------------A--------------C-------------CT---TTA-CCAATTATTGT--ACC--A-CG-A-CCAA-TCTG-TAAATATT--CTTTTTA--A---ACC--CGCT--CT---TCA--TTCT-AACAA----A-GATTTTTCTTTCCAATGT--GAATAA--AAATAGTTTTAC-C---TTG-AACCGA---AAAG--AAAA-TG-TGTG-CA-TGA-GAT-CA-T-AT--TGTATGT-GCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----GAGAA-ATTTTA--AGATGAAAAAA---C----CAG---CGGAAAA----TA-----CGCCAAATGGG-C--C-AATGAACG--ATGAATGACT-----GATTATGTAGCAAGGAATCTTCCTTT--TCA--GATAACT-CAT----TTTCA--TTGGACGATTTTCGC-AGAGC-A--GT---TTTAGA-ACTTAAAATTTGAAA-----ACACCTG-------GTTTT--ATGC---AC--AGAATAAA---CGAT-TTTATTACAAACTATA-ATCAA-CA------TATGC-ATTTATCGATGCAA-TCTTT--AT--------AT-TTGAATCAATATAAAGGA
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                             T---TTA-CC-ATTATTGT--ACC--G-TG-A-TCAA-TCTG-TAAATATT--GTTTTTA--A---ACC--CCTC--CT---TCA--TTCT-TACAA----T-GA-TTTTATTTCCATTGT--GACTAA--ATATAATTTTAC-C---GTG-ATCCG
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ---TCA--TTCT-AACAA----A-GATTTT-CTTTCCAATGT--GACTAA--ATATAAGTTTAC-C---ATG-ATCCGA---AAAG--AAAA-TGGTGTG-CA-TGA-TAT-CG-T-AT--
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                               T--ACC--AACGCA-TCAAATCTG--AAATATT--CTTTTTA--ATCAGCC--TCTC--CT---TCA--TTCT-AACAA----A-TATTT---CTTCCAATGT--g
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tttgtcaatggt------CATGC-ATTTATCGATGCAAGGCTTT--ATGTTTCACAGT-TTGAATCAATATAAAG
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AT-TCTATTACAAGCTATA-AACAA-CACAAAGTCATGC-ATTTATCGATGCAA-TCTTT--AT--------AT-TTGtatatacatatatatgggtttaaacattctatc
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tC--CCTC--CT---TCA--TCCT-AACAA----A-GATTTT-CTTCCCTATGT--GTATAA--ATATAATTTTAT-C---ATG-ATCC
gi|27                         :   GAGTGAAA-A-CAACAA-C-CACG-TT-GCTATGAT----------AAGAAC-A-TTTTA--AC-CTT---A----T-AT-T--A-GG-T-AT
gi|28                         : tcGAGTGAAA---CAACAA-C-CACG-CT-GCTA---T----------AAGAAA-A-TGTGA--GC-CTT---A----T-AT-T--A-GG-T-A
gi|29                         : tcGAGTGAAA-A-CTACAA-C-CACG-TT-GCTACGAT----------AAGAAA-A-TTTGA--G
gi|3                          :   cAGTGAAA-A-CCGCAA-CGCACC-TT-GCTAAGTT----------AAGAAA-A-TTTAA--GC-TTT---A----T-AATT--A-GG-TTATT-T----------TGTCAATCG--GACGA-T-G-TGAT-G-CAGT-GGCCA---A-GG--GATTTTGTCT-TCCGTA--TC-AAATGA---TTTAT---TT----CACACAGG---ACTG-C-T--------C----AT------A-------T--TTTCC----------T-GC---AAAAGTTT-GCCCCAGG-TTCAA-CCTAGGAA--AA-TGTGTGTATTT-------------T---T----------T----------------A--------------TTAGTATCCTAAATCT---TTA-CC-ATTATTGT--ATC--A--G-A-TCAA-TTTG-TAAATATTT-CTTTTAA--A---ACC--CCTC--CT---TCA--TTCT-AACAA----AAGTTTTTTCTTGCCAATGTTCGA---A--ATATAATTTTAC-T---ATG-ATCCGA---AAA---AAAA-TGTTGTG-CA-TGA-GAT-CA-T-AT---GT-TGT-GCATGAT-AAAACCGGTTGT--GC--TGA---------AGA-----TTA--G----AAGTAA---C----CTG---CGGAAAA----TA-----CGTCAAATGGG-C--C-ATTGAACG-AATTAATGACT-----TATTATTTAGCAAGG-ATCTTCCTTT--TCG--TCTAACT-CAT----TTTCA--TTGGACAA-TTTCGT-AAAGC-A--GT---TTTAtct
gi|30                         :                                                                                                                                                                                                                                                                                                                                                               ----------------A--------------C-------------CT---TTA-CC-ATTATTGT--ACC--A-C--A-TCAA-TCTG-TAAATA
gi|31                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tcttaaTAACT-CAT----TTTCA--TTGGACGA-TTTCGC-AGAGC-A--GT---TTT
gi|4                          :   GAGTGAAA-A-CAACAA-T-CACG-TT-GCTATGAT----------AAGAAA-A-TTTGA--GC-CTT---A----T----T----GG-T-ATT-T----------CGTCAATCG--GACGA-T-G-TGAT-G-CAGT-GGCCA---A-GG--AATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TT----CATACAGA---ACTG-C-T--------T----AT------ACGTGTATT--TT-CC----------T-GC---A------------CAAG-TTCAA-CCTAGGGA--AA-TGTGTGCATTT-------------T---TGA--------TTAGTATTCTTAA----A--------------C-------------CT---TTA-CC-ATTATTGT--ACC--A-CG-A-TCAA-TCTG-TAAATATT--CTTTTTA--A---ACC--CCTC--CT---TCA--TTCT-AACAA----A-GA-TTTTCTCTCCAATGT--GACTAA--ATATAAGTTTAC-C---ATG-ATCCGA---AAAG--AAAA-TGTTGTG-CA-TGA-GAT-CG-T-A---TGT-TGT-GCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----TAGAA-GTTTT---GGATGAAAAAA---C----CTG---CGGAAAA----AAAC---CGCCAAATGGG-CCAC-ATTGAACGAAATGAA-GACT-----G-TTA-TTAGAAAGGAATTTTACTTT--TCAT-AATAACT-CAT----TTTCAGTTTGGACGA-TTTCGC-A
gi|5                          :  cGAGTGAAA---CAACAA-C--ACG-T--GCTATGAT----------AAGAAA-A-TTTGA--G--TTT---A----T----T--A-GG-T-ATT-T----------CGTCAAT-G--GACGATTTG-TGAT---CAGT-G-CCA---A-GG--AATT--GTCT--CCGTA--CCCAAATGA---TTTAT---TT----CA-ACAGA---ACTG-C-TA-------T----AT--------------T--TT-CC----------T-GC---CACAGTTTT-CCCCA---TTCAAATCTAGGAA--AAATTTGTGCACTT-------------T---TGATTAAGTCTT----------------A--------------A-------------CC---TTA-CC-ATTATTGT--ACC--A-CG-A-TCAA-TCTGTTAAATATT--C-TTTTA--A---ACC--CCTC--CT---TCA--TTCT-AACAA----A-GA-TTTTCTTTCCAATGT--GACT-G--ATATAA-TTTAC-C---ATG-ATCCAA---AAAG--AAAA-TGTTGTG-CA-TGAGGAT-CA-T-CA--TGT-TGTGGCAGGAG-AAAACCGA-TGT--GC-ATGAGAA-----TAGAA-GTTTT---GGATGAAAAAA--------CTG---CGAAAAA----TA-----CGCCAAATGGC-C--C-ATTGAACG-AATGAATGACT-----GTTTATATAGCAATG-ATCTCCCTTT--TCA--TATAACT-CAT----TTTCA--
gi|6                          :  cGAGTGAAA-A-CAACAA-A-CGCG-TT-GCTCAGTA----------AAGAAA-A-TTTGA--GA-TAT---A----T-A--TG-A-GG-T-ATT-T----------CGTTAATCA--GACGA-T-G-TGAT-G-CAGT-GGCCA---A-GG--GATTT-GTCT-TCCGTA--CC-AAATGA---TTTAT---TT----CATACAGG---ACTG-C-T--------T----AT------A-------T--TT-TC----------TTGC---AGAAGTTTTGTCCCAGG-TTCAA-CCCAGGGA--AA-TATGTGCATTT-------------T---T----------T----------------ATTAGTATTCCTAAAC-------------TT---TTA-CC-ATTATTGT--ACC--A-CG-A-TCAA-TCTG-TAAATATT--CTTTTTA--A---ACC--CCTC--CT---TCA--TTCT-AACAA----A-GA-TTTTCTTTCCAATGT--GAATAA--ATACAATTTTAC-C---ATG-ATCCGA---AAAG--AAAA-AGTTGTG-CA-TGA-GAT-CA-TAATTATGT-TGT-GCATGAG-AAAACCGGTTGT--GC-ATGAGAA-----GAGAA-GTTTT---GGATGAAAAAAACCC----CTG---CGGA------------------AAATGGG-C--C-ATT----G-AATGAATGACT-----AATTATTTAGCAAG
gi|7                          :                                 TAAGTT----------AAGAAC---TTTGATAGC-TTCCTCA----T-A--T--GTGA-C-ATT-TTATTCCATCCCGCCTGTTG--AGCGGATTG-GAAG-G-CGGT-G-CCACATG-GG--AATTTTGTCTATCCGTAGCCC-AAATGA---ATTAA---TT----CAGACAGATACACTG-T-TATGACACAT----GT------A-------T--TT-CCCACTCTGTATT-GCACAAGAAGTTTTa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                              gctA-TATG-TACATATT---TTTTTA--A---TCCTACCTC--CC---TTAATTTCTGAACGATATGA-ACTCTCTCTCACCGCT-C--GCATAA--A---AGTTCTACAC---ATG-A-CCGAGAAAAAG--AAAAATGGTGCG-CA-TGA-TAT-CA-T-A---TGT-TGT-ttgacaaccctatccgctctcataaacttttatgagaaaatattgtttgcacttttaatgctcttgtgctctcatgaatttagtattattcataaatacacctccacaatcttatctacactcaatctgtcatactatatgtacatatttttttaatcctacctcccttaatttctgaacgatatgaactctctctcaccgctcgcataaaagttctacacatgaccgagaaaaagaaaaatggtgcgcatgatatcatatgttgtcgcgttatga
gi|8                          :                                                                                                                                                                                                                                        gcttaagttaagaactttgatagcttcctcatatgtgacattttattccatcccgcctgttgagcggattggaaggcggtgccacatgggaattttgtctatccgtagcccaaatgaattaattcagacagatacactgttatgacacatgtatttcccactctgtattgcacaagaagttttttgacaaccctatccgctctcataaacttttatgagaaaatattgtttgcacttttaatgctcttgtgctctcatgaatttagtattattcataaatacacctccacaatcttatctacactcaatctgtcatactCCGA---AAAAGAAAAA-TGTTGTGGCAATGA-GATGCA-T-ATC-TGT-TGT-GCATGAG-AAAACCG-TTGT--GCCATGAGAA-----GAGAA-ATTTTAA-GGATGAAAAAA---C----CAG---CGGAAAA----TA-----CGCCAAATGGG-C--CAAATGAACG-AATGAATGACT-----GA-TATGTAGCAAGGAATTTTCC-TT--TCA---ATAACT-CAT----TTTCA--TTGGACGATTTTCGC-AGAGCAA--GT---TTTAGACACTTAAAATTATGAA-----ACACCTG-------G-TTTTAATGCA--AC--A-AATAAA---CGATCTTTATTACAAACATTA-ATCAACCA------TATGCAATTTATCGATGCAA-TCTTTTAAT--------ATCTTGAATCAATATAAAGcgcgttatga
gi|9                          :   gaGTGAAAGA-CC-CAG-A-CATGCTT-GCTTAGAT----------AAGAAA-A-TTTGAA-GC-TTT---AAATTT-A--G--G-GG-T-ATTAT----------CGTCAATCG--GACGA-T-G-TGAT-G-CAGT-GGCTA---T-GG--GATTT-GTCT-TCCGTA--CC-AA-TGA---TTTATACTTT----CATACAGG---ACTGGC-T--------C----AT------T-------C--TTACC----------T-AC---A--ATCTTTGCCCATGG-TTCA--CCTAGGGA--AA--GTGTGCATTT-------------TAATT----------T----------------GTAT-----------C-------------CTAATTTAACC-ATTAT-GT--ATC--A-CA-A-TCAA-TCTG-TAAATATT--CTTTTTA--A---ACC--TCGC--CT---TCA--TTCT-TACAA----A-GA-TTTTATTGCCAATGT--TAATAA--ATATAATGTTAC-C---ATG-ACCTGA---AAAG--AA