lowQualScore : 1111111111111111111 22222222222222222222222222222222222222222222222 1111111111111111111111111 333333333333333333333333333333333333333333333
lowQualScore : 44444 555555555 1 1 2 2 2 2 2 11 2 4444444444 33333 2 11 777777777 5555555555555555555 2 555555 2 1 1 111 1 1 3333333333 1 11 1 111 33 1 1 1 1111 11 1 22222222222222222222222222222222222222222222222 1 1 11 2222222222 1 22 2 2222 2 2222 22 1 888888888888888888888888888 1 1 1 11 22222 1 22 1 11 1 222 2222 55 1 333 1 1 8888888888888888888888888 1 1 22 22 33 4 22 2 1 1 22222222 11111 1 444444444 11 2 111 111 000000000000000000000000000000000000000000000 3333333333333333333333 22222 11111
lowQualScore : 44444 666666666 5 7 6 0 4 0 0 0 0 88 3 3 2 9999999999 2 22222 4 0 3 66 88 111111111 55 4 1111111111111111111 0 777777 3 3 3 666 3 3 1111111111 2 33 8 3 0 444 00 3 3 3 2 7 8888 88 3 66666666666666666666666666666666666666666666666 7 5 00 7777777777 5 4 66 2 0 6 4444 0 0000 2 55 5 000000000000000000000000000 2 5 2 2 2 7 1 3 7 6 3 88 6 99999 5 6 77 3 5 4 22 5 000 0000 55 5 6 6 6 666 5 6 7 4444444444444444444444444 6 5 6 6 5 11 6 6 2 44 00 3 0 77 3 0 3 3 3 7 7 00000000 33333 6 9 0 333333333 3 8 8 1 11 6 6 6 99 111 000 5 77 5 5 5 5 1 5 555555555555555555555555555555555555555555555 2222222222222222222222 55 8 11111 5 22222 5 3 3 55 2 55 4 8 55 55 4 55 8888 6666 8 4 4 4
lowQualScore : ..... ......... . . . . . . . . . .. . . . .......... . ..... . . . .. .. ......... .. . ................... . ...... . . . ... . . .......... . .. . . . ... .. . . . . . .... .. . ............................................... . . .. .......... . . .. . . . .... . .... . .. . ........................... . . . . . . . . . . . .. . ..... . . .. . . . .. . ... .... .. . . . . ... . . . ......................... . . . . . .. . . . .. .. . . .. . . . . . . . ........ ..... . . . ......... . . . . .. . . . .. ... ... . .. . . . . . . ............................................. ...................... .. . ..... . ..... . . . .. . .. . . .. .. . .. .... .... . . . .
lowQualScore : 00000 000000000 0 0 0 0 0 0 0 0 0 00 0 0 5 5555555555 5 55555 0 0 0 55 00 555555555 00 0 0000000000000000000 0 555555 0 3 3 000 3 3 7777777777 0 33 3 3 7 333 33 3 7 3 3 3 7777 33 3 00000000000000000000000000000000000000000000000 0 0 00 5555555555 0 0 55 5 0 0 0000 0 5555 5 55 0 555555555555555555555555555 5 5 5 5 3 3 0 3 3 7 7 55 0 55555 5 0 55 0 0 0 00 0 000 0000 00 0 0 0 0 000 0 0 0 0000000000000000000000000 0 0 0 0 0 00 0 0 5 00 55 0 0 55 0 0 3 7 3 3 3 77777777 55555 0 8 0 222222222 2 0 0 0 00 0 7 7 22 555 000 7 99 7 7 7 7 7 7 000000000000000000000000000000000000000000000 3333333333333333333333 99 9 99999 0 55555 0 4 9 55 3 66 0 0 55 55 0 55 5555 4444 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGATAG-GATATATTTGATG-TTTTTACACTTNNNNNNNNNNNNNNNNNNNNNNNNNNAAGACGTTTCANAGATGTGATTGAACAGTTTAACATCCCCCGATTNAATNTACGGTGAAAACGAGCAGNACCATTAGATCTANTACCTCNCCNTGGANATCCTCCGTGNTAAAAGANNAANGGAACAGATCGAATTACAACGNATTTGTACNGCAAGACGACAAAAAACAAAACAAAAGACGGAGCTCGCACCGCACTCAGTACCTAATAT-TC-AATTCT-CGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-CGACGGNACG--TTTTGT-ANCATCG-TCGCTTGATGAAA-CA-GAAGA--ATA-AACGTCTA----ATTTTATTAA-AACATTATTTA---AG--AGAGATATCTAAAGAAAATTAATAGATGNCGCTAATTNAAAGAGCTAGACCTATNCCAATNGCANAGCTTCTGGAACTCCAGAAAATACGGGGNCCACAGNACGAAATCAGAGAANACGAATGGNCGCCCCCTGTTGAACCTAACTCGCAATNCNCGCGATATTAACATG-TATAATTATGTTAAACGATNCTTTCCGACTTTACAGCTAAGTTCCGAAGAACCTAAGGAGCGTCATTGAAATCAGNAGAACATTATCNACAACCGACGTCAAGCGCCAAGCCTAAAAA--AACTCCTAACTAGAGCCAAATTCTCACTGAATCAGGGTAAA--T---GTGTCAACAAA--TATGGTGACCCACGCTGCGGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACAAATACGGGACCCATTCGTCAGGAATACACCCTGCAGTGAACATTTTGATTTATGTGCTAATGNAAACTNTTCTAATTTTTTCCGTTCTACAAAGNTTTAGAAAACAATGAA-CATTTACGGAGAGCGAAAGAGGAAACTATNTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCGCC-TTATTG--ACTTTAACTTGCGCCAAT-TTATT--ATGC-T-GCCTTTA---T-GACGTCA--C-AAT-AACG-A-CGTCT-TAACG------GT----------------TACAC----TGTCATAA--CAAAGAC-----T--GT-G----------TA-TTTGAAATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
Reference ( gi|1 ) : CGATTAGATTTCCTCAGCCATATCCCAGAAACAGTTGAGGTTGATACCAAAAATGGCTAGTTTTGATGTCACTCTTGTATACCAACATACCACATACAGAAGCAATTGCATTCTGGATCGATAAACACCAAAGCGAAATAATCCTAGATTTTCCAAAGACTATCTTAGAGGGATAAAATTAGTACTAGAGAACAACTATTCTATGTTCGGACAACAAACACTTATTACAAATAAAAGGAACAGCCATGGGTACTAAAGTCGCCCCAACATATGCTACCCTAGTACTAGGATTCCTAGAGGAGAAATTATTTGAAAACACAGACAGATTATTTGAAAATCAAGTTGCGCAATACATAAAATCTAACTGGAAGCGATAT-TTAGACGATTGTTTCATTTTTTGGTCCAAATCACATAAATATTAGAAGAC-TTTCATA-ATGTG-TTGAACAGTTTA-CATCC-TCGATTCAATTTACGGTGGAAACAAGCAGCAC----AGA---ACTACTTTT-TTTGGATATCCTC-GTAATAAAAGAAGACAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCACAC------CAGTACCTGATAT-TC-AATTCT-TGTCA-TCCCTC-ACATGT-T-AAC-GC-AACATACCGTTTAACA-TGGCGAGACGTGTTTTGT-ACCATCG-TCGTTTGATGAAAACA-GAAGA--ATA-AACGTCTACAGGA----ATTAACAACATT-TTTACTTAGACACAAATATCC-GACAAATTTAATATATATCGCT-ATAGAGAG-GCTAGATCTATACCAATCTCAGAAC-TTCGGAACTTCAGAAAAT-CGGGAACT-CAGGATGGAATCAGAAATCA--AAT--CCACCTC--GTCG----TAACTCACAATCCGCGTAATATTAATATG-TATAATTCTGTTAAACAATGCTTTCCTATTTTATAAC-AA--TCCGAAAAATCTAAGGAGCATCATTGAAAT--GAAGAACATTATCTACAGTCGACTTCAACCTCCTAATCTAAAAAGAAACTACTGACCAGAGCCAAATTTTCAACCAATAAAGGAAAAACTACAGTTTC--CAAATGTATG--GATCCCCGTTGCAGTACCTGCCTTATTTAAAAAACAGGAGATACTTTCACGTTTAAATGTGGCAAAAACTTTCACCATTCGAACAAATTGTCATGTAAATCCATGATTTAATATATTGCATGATTTTACCTCCTGCGGAGAAAATTACATAGGAGACCGGAACTAAGTTAGCTGACCGTGTGAGAGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAAC-TTTTTAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTAT-TTA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAATTGTCATAT-TTATATCCATT-GCTT--------TATTT-ATGGCGCC-TTATTG--ACTTTAACTTGCGCCAAT-TT-TT--ATGC-T-GCCTTTA---T-GACGTCA--C-AAT-AACG-A-CGTCT-TAANNNNNNNNNNNNNNNNNNNNNNNNNTTACAT----TGTCATAA--CAAAGAC-----T--GT-G----------TA-TTTGAAATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
gi|20 : AGTTGCGCAATACATAAAATCTAACTGATAG-GATATATTTGATG-TTTTTACACTT
gi|5 : AAGACGTTTCATAGATGTGATTGAACAGTTTAACATCC-CTGAT-CAATGTACGGTG-AAACGAGCAGCATCATTAGATCTACTACTTCTCTTTGGATATCCTCCGTAATAAAAGAAGAACGGAACAGATCGAATTACAACGGATTTATACTACAAGACGA----------------AGACGGAGCTCACACCGCACTCAGTACCT-ATAT-TCGAATTCTATGTCATTCCCTCGACATGT-TAAACGGCAAACATA-CGTTAAACATTGGC--GACG---TTTGTGACCATCG-TCGTTTGATG--AACA-GAAGA--ATA-AACGTccttta
gi|2 : GAT-TTTCAAA-ATGTA-TTGAACAGTTTA-CATCCCTCAATTAAATTTACAGTGAAAACAAACAAAAC----AGA---AATACCTCA-CATAGAAATCCTT-GTGCTAAAAGATTAAAGGAA-------A-TTACAATTTATTTGTACAGCAAAA--ACAAAAAACAAAACAAAAAACGAA-TTCGTAT------CAGTACCTAATAT-TC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AATATACCGTTAAACA-TGACGATACGT-TTTTGC-ATCATCG-TCG-TTGATGAAA--A-AAATA--ATA-GATGTC
gi|4 : TATATC-AATTCT-C-TCA-ACCCTC-CCATGGAT-AAT--C-AA-ATAC-GTGTAACC-CGATGGAACGGGTGTTGT-AGCACCGATCACTTTCTGAAATCAAGAAGAGAATACAACGTCTA----ATTTTATTAA-AACATTATTTA---AG--AGAGATATCTAAAGAAAATTAATAGATGATGTTAATTTAAAG-GCTA-ACCTATTCCAATTACAGAGCTTTTGAAACTTT----AATACGGGATCCACAAGAC--AAT-AGAGAACACGAATGGATACCCT--ATTGAACCTAATTAGC-ATGCGCGC-ATA-TAATATACTAT-ATTATGTTAAAAGATTCCTTCAGATTTTACAACTAAGTTCCGAAAAactattgaaaaagctagatctataccaatggcataactctggaactccagaaaatcaaggattcagtatgaaatcagaaaaaaatccgcctcctgttgtaactcacaatccccgtgatattaacatgtataattatattaaacattactttccaactttacagcaatccgagaacctaaggagcgtcat
gi|2 : tTAATAGATGTCACT-ATTGAAAAAGCTAGATCTATACCAATGGCATAAC-TCTGGAACTCCAGAAAAT-CAAGGATT-CAGTATGAAATCAGAAA-AA--AAT--CCGCCTCCTGTTG----TAACTCACAATCCCCGTGATATTAACATG-TATAATTATATTAAACATTACTTTCCAACTTTACAGC-AA--TCCG-AGAACCTAAGGAGCGTCAT
gi|18 : gattttcaaaatgtattgaacagtttacatccctcaattaaatttacagtgaaaacaaacaaaacagaaatacctcacatagaaatccttgtgctaaaagattaaaggaaattacaatttatttgtacagcaaaaacaaaaaacaaaacaaaaaacgaattcgtatcagtacctaatattcaattcttgtcatccctcacatgttaaacgcaatataccgttaaacatgacgatacgtttttgcatcatcgtcgttgatgaaaaaaaAATATGTACATG-TATAATTCTGTTAAACAATGCT
gi|18 : AGCATCATTGAAAT--GAAGAACATTATCTACAagcatcattgaaatgaagaacattatctaca
gi|12 : aatatgtacatgtataattctgttaaacaatgctTAAAATCAGCAGAA-ATTATCAACAACCGACGTCAAGCGCCAAGCCTAAAAA--AACTCCTAACTAGAGCCAAATTCTCACTGAATCAGGGTAAA--T---GTGTCAACAAA--TATGGTGACCCACGCTGCGGGAC
gi|14 : GTCCACAAGCAACAAATACGGGACCCATTCGTCAGGAATACACCCTGCAGTAAATATTTTGATTTATGTGCTAATGCAAACTTTTTTAATTTTTT-CGTTCTACAAAGTTTTAGAAAA
gi|3 : AATACACCCTGCAGTGAACATTTTGATTTATATGCTAATGGAAAC-ATTCTAATTTTT-CCGTTCTATAAAGGTTTAGAAAACAATGAA-CATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTAT-TCA-AACCCAAGTTGAATGTT-ATTTAATCATTTGCATCCAGTGATCATAA-TTGAACCCATT-ACCT--------CATTT-ATGGAACC-TTTTTG--ACTTTACGTTGCGCCAAT-CTATT--TTGC-T-GCTTTTA---T-GACGTCA--C-AAT-AGCG-A-TGTCT-TAACA-------------------------ACAA----TGGCATAA--CAAATAC-----TACGT-G----------TA-TTTGAAGTT-GT-TAC-A-----TT-CTGAATA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTTTT
gi|6 : AAAGAGGAAACTATGTTGTAAAATTATCTTATAACAGAAGTTGAATGCTTATTTA-TCATTTACTCT--A-----ATAT-TTTTACTC-TT-GCTT---------ATTT-ATGGCGCCCTTATTG--A-TTTAACTTGCGCCAAT-TTATT--ATGC-T-GGCTTTA---T-GACGTCA--C-AAT-AACGAA-CGTCT-TAATACCAACTGTCCA--------------AC-------------A--CAAAGAC-----T--GT-G----------TA-TTTGTAATC-ATCTAC-A-----CT-CGGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGAGT-AAACT-GTAGATAATTATTcagcaatcgttggatttt
gi|7 : A-AACCAAATTTGAATGCT-ATTTAATCA-TTACT-TCAATTGTCATATGTGAAACCCATT-GCTA--------TA-TT-ATAGCGCC-TTATTG--AC--TAACTTGCGCCAAC-TT-ATAGATGC-TGGCCTTTA---T-GACGTCA--CAAATGAACG-A-CTTTTGTAACG------------------------TACAC----AGTCATAAACTAAAGAC-----T--GT-A----------T--TTTAAAATC-A---ACAA-----TT-CTGAAGAAGGCCGACGAA-GTGTAA-A--GCTTT-C--T----AA----GTGG-T-TAA-T-GTAGATAATTAcagtcttcgttggaattt
gi|11 : aAGTTATCATAT-CTAAACCTTTTAGCTTATCGATCTTATTTTATGGCGCC-TTATTG--ACTTTAACGTGCGCCATT-TTATT--ATGCTT-ACCTTTA---T-GACGTCA--C-AAT-AACG-A-CGT-T-TAAgtcagtcatcgttgga
gi|8 : -ATGGTGCC-TCCTTGTGACATTCGTTTGCGCTAAAAGT-TT--ATGC-T-AACTTTACTAT-GACGTCA--C-AAT-ATTT-ATTGTTC-TAAAAGTTTACGTTGTCCTTAATA-----TACATGTAATGTCACAA--TAGCGACTTTAAT--AT-GTTATTGTTGTTG-TTTGAAATT--------------CTGCTGAAGA--GCCG-TAAT-ACG-AA-A--GC--G-C--TTTAGAA------AA-T-AAA-T-GTctacgatgtcggaagattaagttttaacaatgattcat
gi|10 : T-TTATT--ATGC---GCCTT-A---TCGACCTCATCC-ACT-AACG-A-CCTCT-TAACG------------------------TACAC----T-TCATAAA-CAAAGACC----T--GTCG----------TACTTTGTAATCCAT-TAC-A-----CT-CATAAGA--CCCGACAAT-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-TAAAA-T-GTAAAgaaatctttaactgactaatctttttctatactcttcctatgcctaggacttatttt
gi|22 : caagac-GCCTTTA---T-GACGTCA--C-AAT-AGCG-A-CGTCT-Tattttcatcatctgaat
gi|13 : TTACAT----TCTGA-AG--TAAAGAC-----T--GT-G----------TA-TTTG---TT-AC-TAC-ATACAGCT-C-GAA-A--GCCGACAAG-GCG-AA-AGGGC--G-C--T----AA-GT-GTGA-T-AAA-TGGCAGATAATTATTtaccaaa
gi|9 : atcAAATAC-----T---T-G----------TA-TAT---AT---T-TAC-A-----CT-CTGAA-A--GC-GACAAG-GCG-AACA--AC--G-C--A----AA-GTGGCGATT-AAA-T-GTAGATTATTctgtcaacgttggattttat
gi|21 : -TAC-A-----CT-CTGAAGA--GCCGGCAA--GCA-AA-A--GC--G-CTAT----AA-GA-GTGA-A-GAA-T-G-AGAtcagtcattgtgggattttattttttacccacacacgacttcaatgatttccatacacagagcaattccataaactttagtaatcattaacatagttatctcat
gi|15 : AAGA--GCCG-CAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATT
gi|16 : aA--GCCGACAAGTGCG-AACA--GC--GGC--T----AAAGT-GTGA-T-AAA-T-GTAGATAAATATTcctcagttcatcgttggattttattctttccctctacgttttacctataccatggacttttactacaaat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TATAGTTCATGTCATCCTTCACGTACAAAACGTAATACGCCATCAAATATAACAATACCTTTTTAATCA
Unaligned ( gi|19 ): TAAGGCGAAAGCTCTCTAAATGTGAAATCTTCAGTCAACTTATTTTTTTCTATACTCTACCTAT
Alignments
lowQualScore : 111111111111111111
lowQualScore : 2 1 2 22222222222222222222222222 1 2 11 2 22 4444 11111 11 2 6666666 444444444444444444 2 444444 1 11 111 11 11 33333 1 1 1 3333 11 1 555555555 2 1 333 22 1 2 1 111 2 22 111 1 1111 4444444444444444444 11 1 33333 33 22 555555 11 22 11 1 11 2 33 11111 1 333333333 111 3333333333333333333 88888888888888888888888888 11111 11111 2222222222222222222222 11111 11111
lowQualScore : 4 0 5 4 0 3 4 66666666666666666666666666 5 1 3 44 3 44 88 1 7 0 1 4444 88888 1 88 1 3 11 22 1 4444444 1 0 11 999999999999999999 0 3 0 000000 2 3 8 00 8 8 8 333 8 6 1 00 33 00000 0 1 0 0 3 0000 33 0 888888888 0 5 555 2 77 1 2 7 1 3 1 7 3 6 0 1 44 1 0 000 0 7 3 11 44 1 111 6 2 8888 4444444444444444444 0 7 1 1 22 3 0 3 3 2 1 3 0 0 66666 7 0 0 00 1 6 1 2 2 2 4 77 2 333 2 4 333333 2 88 77 88 3 2 3 0 1 88 2 44 1 0 0 00 1 66666 0 0 3 3 6 2 1 0 0 8 1 6 8 222222222 0 6 6 99 3 000 77 888 888 5 66 5 5 8888888888888888888 5 5 5 77777777777777777777777777 66 22222 5 33333 1111111111111111111111 88 99 33333 4 11111 4 2 2 55 1 44 3 7 55 55 3 55 7777 4444 7 3 3 3
lowQualScore : . . . . . . . .......................... . . . .. . .. .. . . . . .... ..... . .. . . .. .. . ....... . . .. .................. . . . ...... . . . .. . . . ... . . . .. .. ..... . . . . . .... .. . ......... . . ... . .. . . . . . . . . . . . .. . . ... . . . .. .. . ... . . .... ................... . . . . .. . . . . . . . . . ..... . . . .. . . . . . . . .. . ... . . ...... . .. .. .. . . . . . .. . .. . . . .. . ..... . . . . . . . . . . . . . ......... . . . .. . ... .. ... ... . .. . . ................... . . . .......................... .. ..... . ..... ...................... .. .. ..... . ..... . . . .. . .. . . .. .. . .. .... .... . . . .
lowQualScore : 0 0 5 0 0 0 0 00000000000000000000000000 0 0 3 00 7 00 33 0 3 7 0 3333 33333 0 33 0 3 77 00 0 3333333 0 7 77 333333333333333333 7 3 7 333333 3 2 0 88 0 0 0 666 0 4 4 88 44 88888 0 0 0 5 2 2222 88 0 000000000 0 5 000 5 55 0 0 3 0 7 0 3 3 7 7 0 77 0 7 000 7 3 7 77 33 0 333 7 0 7777 7777777777777777777 7 3 0 0 77 2 0 2 0 0 0 7 7 7 00000 3 7 7 33 0 7 0 5 5 5 0 55 5 555 5 0 555555 5 55 55 00 0 5 0 7 0 33 0 00 0 0 7 77 0 00000 2 0 2 2 5 5 4 6 8 0 4 0 0 888888888 8 7 7 22 5 000 11 777 888 0 99 0 0 8888888888888888888 0 0 0 11111111111111111111111111 99 99999 0 11111 3333333333333333333333 00 33 77777 4 11111 4 0 5 00 3 22 6 3 00 00 6 00 7777 1111 3 6 6 6
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGGNAGCGATATATTNGACGATTNTTNCACTTTTTGGTCCAAATCACATAAATATTAGAAGACGTTTCATA-ATGTGATTGAACAGTTTA-CATCCCC-GATTCAATTTACGGTGAAAACGAGCAGCAC----AGA-CTA-TACCTCTCTTTGGATATCCTC-GTAATAAAAGAAGAAAGGAA-------AATTACAACGGATTTATACTACAAGA------------------AAAACGGA-CTCGCACC----TCAGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-TGACGANACG--T--TTTGT-ACCATCG-TCGTTTGATGAAA-C--AGAAGA--ATA-AACGTCTACAGGATTTTATTAACAACATTATTTACTTAGANACAGATATCCGAAGAAAATTAATAGATGTCGCTA-TTTAAAGAG-CTAGATCTATACCAATNNCAGAACTTCTGGAACTTCAGAAAAT-CGGGAACT-CAGGACGGAATCAGAGAANACGAAT--CCGCCTCCTGTCG----TAACTCGCAATCCGCGCGATATTAACATG-TATAATTNTGTTAAACAATGCTTTCCGATTTTACAAC-AA--TCCGAAAAACCTAAGGAGCGTCATTGAAAT--GAAGAACATTATCTACAGCCGACNTCAANCNCCNAGCCTAAAAAGAAACTNCTGACCAGAGCCAAATTCTCANCGAATNAGGGNAAAACTACAGTNTCAACAAATGTATGGTGACCCNCGCTGCGGNACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTTCTAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTTAT-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAA----------------------CG--TAC--AC----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
Reference ( family-438 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGATAG-GATATATTTGATG-TTTTTACACTTNNNNNNNNNNNNNNNNNNNNNNNNNNAAGACGTTTCANAGATGTGATTGAACAGTTTAACATCCCCCGATTNAATNTACGGTGAAAACGAGCAGNACCATTAGATCTANTACCTCNCCNTGGANATCCTCCGTGNTAAAAGANNAANGGAACAGATCGAATTACAACGNATTTGTACNGCAAGACGACAAAAAACAAAACAAAAGACGGAGCTCGCACCGCACTCAGTACCTAATATTC-AATTCT-CGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-CGACGGNACG--T--TTTGT-ANCATCG-TCGCTTGATGAAA-C--AGAAGA--ATA-AACGTCTA----ATTTTATTAA-AACATTATTTA---AGAGA--GATATCTAAAGAAAATTAATAGATGNCGCTAATTNAAAGAG-CTAGACCTATNCCAATNGCANAGCTTCTGGAACTCCAGAAAATACGGGGNCCACAGNACGAAATCAGAGAANACGAATGGNCGCCCCCTGTTGAACCTAACTCGCAATNCNCGCGATATTAACATG-TATAATTATGTTAAACGATNCTTTCCGACTTTACAGCTAAGTTCCGAAGAACCTAAGGAGCGTCATTGAAATCAGNAGAACATTATCNACAACCGACGTCAAGCGCCAAGCCTAAAA--AAACTCCTAACTAGAGCCAAATTCTCACTGAATCAGGGTAAA--T---GTGTCAACAAA--TATGGTGACCCACGCTGCGGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACAAATACGGGACCCATTCGTCAGGAATACACCCTGCAGTGAACATTTTGATTTATGTGCTAATGNAAACTNTTCTAATTTTTTCCGTTCTACAAAGNTTTAGAAAACAATGAA-CATTTACGGAGAGCGAAAGAGGAAACTATNTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTTAT-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAA----------------------CGGTTAC--AC----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
gi|1 : AGTTGCGCAATACATAAAATCTAACTGGAAGCGATAT-TTAGACGATTGTTTCATTTTTTGGTCCAAATCACATAAATATTAGAAGAC-TTTCATA-ATGTG-TTGAACAGTTTA-CATCCTC-GATTCAATTTACGGTGGAAACAAGCAGCAC----AGAACTA----CTTTTTTTGGATATCCTC-GTAATAAAAGAAGACAGGAA-------AATTACAACGGATTTATACTACAAGA------------------AAAACGGA-CTCACACC------AGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAA-C-GC-AACATACCGTTTAACA-TGGCGAGACG--TGTTTTGT-ACCATCG-TCGTTTGATGAAAAC--AGAAGA--ATA-AACGTCTACAGGA----ATTAACAACATT-TTTACTTAGACACAAATATCCGAC-AAATTTAATATATATCGCTA---TAGAGAGGCTAGATCTATACCAATCTCAGAACTTC-GGAACTTCAGAAAAT-CGGGAACT-CAGGATGGAATCAGA-AAT-CAAAT--CCACCTC--GTCG----TAACTCACAATCCGCGTAATATTAATATG-TATAATTCTGTTAAACAATGCTTTCCTATTTTATAAC-AA--TCCGAAAAATCTAAGGAGCATCATTGAAAT--GAAGAACATTATCTACAGTCGACTTCAACCTCCTAATCTAAAAAGAAACTACTGACCAGAGCCAAATTTTCAACCAATAAAGGAAAAACTACAGTTTC--CAAATGTATG--GATCCCCGTTGCAGTAC
gi|1 : cgattagatttcctcagccatatcccagaaacagttgaggttgataccaaaaatggctagttttgatgtcactcttgtataccaacataccacatacagaagcaattgcattctggatcgataaacaccaaagcgaaataatcctagattttccaaagactatcttagagggataaaattagtactagagaacaactattctatgttcggacaacaaacacttattacaaataaaaggaacagccatgggtactaaagtcgccccaacatatgctaccctagtactaggattcctagaggagaaattatttgaaaacacagacagattatttgaaaatcaGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTT-TAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATTT-A-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAATTGTCATAT-TTATATCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTT-T-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAANNNNNNNNNNNNNNNNNNNNNNNNNTTAC--AT----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATTctgccttatttaaaaaacaggagatactttcacgtttaaatgtggcaaaaactttcaccattcgaacaaattgtcatgtaaatccatgatttaatatattgcatgattttacctcctgcggagaaaattacataggagaccggaactaagttagctgaccgtgtgagagtccacaagcaaccgacacgggacccatccgtcaggaatacaccctgcagtaaacattttgatttatgtgctaatggaaactttttaattttttccgttctacaaagttttagaaaacaatgaaacatttacggagagcgaaagaagactattttgtaaaattatttaaaccgaagttgaatgctatttaatcatttactctcaattgtcatatttatatccattgctttatttatggcgccttattgactttaacttgcgccaatttttatgctgcctttatgacgtcacaataacgacgtcttaannnnnnnnnnnnnnnnnnnnnnnnnttacattgtcataacaaagactgtgtatttgaaatcattacactctgaagagccgacaaggcgaaagcgctaagtgtgataaatgtagataattatt
gi|10 : cgattagatttcctcagccatatcccagaaacagttgaggttgataccaaaaatggctagttttgatgtcactcttgtataccaacataccacatacagaagcaattgcattctggatcgataaacaccaaagcgaaataatcctagattttccaaagactatcttagagggataaaattagtactagagaacaactattctatgttcggacaacaaacacttattacaaataaaaggaacagccatgggtactaaagtcgccccaacatatgctaccctagtactaggattcctagaggagaaattatttgaaaacacagacagattatttgaaaatcaagttgcgcaatacataaaatctaactggaagcgatatttagacgattgtttcattttttggtccaaatcacataaatattagaagactttcataatgtgttgaacagtttacatcctcgattcaatttacggtggaaacaagcagcacagaactactttttttggatatcctcgtaataaaagaagacaggaaaattacaacggatttatactacaagaaaaacggactcacaccagtacctgatattcaattcttgtcatccctcacatgttaacgcaacataccgtttaacatggcgagacgtgttttgtaccatcgtcgtttgatgaaaacagaagaataaacgtctacaggaattaacaacatttttacttagacacaaatatccgacaaatttaatatatatcgctatagagaggctagatctataccaatctcagaacttcggaacttcagaaaatcgggaactcaggatggaatcagaaatcaaatccacctcgtcgtaactcacaatccgcgtaatattaatatgtataattctgttaaacaatgctttcctattttataacaatccgaaaaatctaaggagcatcattgaaatgaagaacattatctacagtcgacttcaacctcctaatctaaaaagaaactactgaccagagccaaattttcaaccaataaaggaaaaactacagtttccaaatgtatggatccccgttgcagtacctgccttatttaaaaaacaggagatactttcacgtttaaatgtggcaaaaactttcaccattcgaacaaattgtcatgtaaatccatgatttaatatattgcatgattttacctcctgcggagaaaattacataggagaccggaactaagttagctgaccgtgtgaga---TTTAT-TATGC---GCCTT-A---TCGACCTCATCC-ACT-A-------------------ACG-ACCT-CT-TAA----------------------CG--TAC--AC----T-T-CATAAA-CAAAGACC----T--GTCG----------TACTTTGT-AATCCAT-TAC-A-----CT-CATAAGA--CCCGACAAT-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-TAAAA-T-GTAAA
gi|11 : caagacAGTTATCATAT-CTAAACCTTTTAGCTTATCGATCTTATTTTATGGCG-CCTTATTG--ACTTTAACGTGCGCCAT---TTTAT-TATGCTT-ACCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT--T-TAA----------------------C---TAC--GA----TGT-CG------GAAGAT-----T--AA-G----------T--TTTAACAATG-AT-Tattttcatcatctgaat
gi|12 : TAAAATCAGCAGAA-ATTATCAACAACCGACGTCAAGCGCCAAGCCTAAAA--AAACTCCTAACTAGAGCCAAATTCTCACTGAATCAGGGTAAA--T---GTGTCAACAAA--TATGGTGACCCACGCTGCGGGACcat
gi|13 : TTAC--AT----TCT-GA-AG--TAAAGAC-----T--GT-G----------TA-TTTG----TT-AC-TAC-ATACAGCT-C-GAA-A--GCCGACAAG-GCG-AA-AGGGC--G-C--T----AA-GT-GTGA-T-AAA-TGGCAGATAATTATT
gi|14 : atcGTCCACAAGCAACAAATACGGGACCCATTCGTCAGGAATACACCCTGCAGTAAATATTTTGATTTATGTGCTAATGCAAACTTTTTTAATTTTTT-CGTTCTACAAAGTTTTAGAAAActgtcaacgttggattttat
gi|15 : AAGA--GCCG-CAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATT
gi|16 : aA--GCCGACAAGTGCG-AACA--GC--GGC--T----AAAGT-GTGA-T-AAA-T-GTAGATAAATATTcctcagttcatcgttggattttattctttccctctacgttttacctataccatggacttttactacaaat
gi|17 : -AGTTCA-TGTCA-TCCTTC-ACGTAC-AAAAC-GT-AATACGCCATCAAATA-TAACAATACC--T--TTTcagtcatgcgttggattcttatcttttctctacgtaattacctatcacatggacagtt
gi|18 : tatATATGTACATG-TATAATTCTGTTAAACAATGCTtaatca
gi|18 : aAGCATCATTGAAAT--GAAGAACATTATCTACAagcatcattgaaatgaagaacattatctaca
gi|2 : aatatgtacatgtataattctgttaaacaatgctTTTCAAA-ATGT-ATTGAACAGTTTA-CATCCCTCAATTAAATTTACAGTGAAAACAAACAAAAC----AGA---AATACCTCAC-ATAGAAATCCTT-GTGCTAAAAGATTAAAGGAA--------ATTACAATTTATTTGTACAGCAAAA--ACAAAAAACAAAACAAAAAACGAA-TTCGTA------TCAGTACCTAATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AATATACCGTTAAACA-TGACGATACGT-T--TTTGC-ATCATCG-TCG-TTGATGAAA----AAAATA--ATA-GATGTC
gi|2 : gatTGAAAAAAAT-AATAGATGTCACTA-TTGAAAAAG-CTAGATCTATACCAATGGCATAACT-CTGGAACTCCAGAAAAT-CAAGGATT-CAGTATGAAATCAGAAAAAA---AT--CCGCCTCCTGTTG----TAACTCACAATCCCCGTGATATTAACATG-TATAATTATATTAAACATTACTTTCCAACTTTACAGC-AA--TCCG-AGAACCTAAGGAGCGTCATactattgaaaaagctagatctataccaatggcataactctggaactccagaaaatcaaggattcagtatgaaatcagaaaaaaatccgcctcctgttgtaactcacaatccccgtgatattaacatgtataattatattaaacattactttccaactttacagcaatccgagaacctaaggagcgtcat
gi|20 : gattttcaaaatgtattgaacagtttacatccctcaattaaatttacagtgaaaacaaacaaaacagaaatacctcacatagaaatccttgtgctaaaagattaaaggaaattacaatttatttgtacagcaaaaacaaaaaacaaaacaaaaaacgaattcgtatcagtacctaatattcaattcttgtcatccctcacatgttaaacgcaatataccgttaaacatgacgatacgtttttgcatcatcgtcgttgaAGTTGCGCAATACATAAAATCTAACTGATAG-GATATATTTGATG-TTTTTACACTT
gi|21 : -TAC-A-----CT-CTGAAGA--GCCGGCAA--GCA-AA-A--GC--G-CTAT----AA-GA-GTGA-A-GAA-T-G-AGAccttta
gi|22 : -GCCTTTA---T-GACGTCA--C-AAT-A-------------------GCG-ACGT-CT-TTA----------------------C
gi|3 : AATACACCCTGCAGTGAACATTTTGATTTATATGCTAATGGAAAC-ATTCTAATTTTT-CCGTTCTATAAAGGTTTAGAAAACAATGAA-CATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTAT-TCA-AACCCAAGTTGAATGTT-ATTTAATCATTTGCATCCAGTGATCATAA-TTGAACCCATT-ACCT--------CATTT-ATGGAA-CCTTTTTG--ACTTTACGTTGCGCCAA---TCTAT-TTTGC-T-GCTTTTA---T-GACGTCA--C-AAT-A-------------------GCG-ATGT-CT-TAA----------------------CA---AC--AA----TGG-CATAA--CAAATAC-----TACGT-G----------TA-TTTGA-AGTT-GT-TAC-A-----TT-CTGAATA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTTTTcaaa
gi|4 : ATAT-C-AATTCT-C-TCA-ACCCTC-CCATGGATAA---TC-AA-ATAC-GTGTAACC-CGATGGAACGGGT--GTTGT-AGCACCGATCACTTTCTGAAA-TCAAGAAGAGAATACAACGTCTA----ATTTTATTAA-AACATTATTTA---AGAGA--GATATCTAAAGAAAATTAATAGATGATGTTAATTTAAAG-G-CTA-ACCTATTCCAATTACAGAGCTTTTGAAACTTT----AATACGGGATCCACAAGAC--AAT-AGAGAACACGAATGGATA--CCCTATTGAACCTAATTAGC-ATGCGCGC-ATA-TAATATACTAT-ATTATGTTAAAAGATTCCTTCAGATTTTACAACTAAGTTCCGAAAAcagcaatcgttggatttt
gi|5 : ttAAGACGTTTCATAGATGTGATTGAACAGTTTAACATCCCT-GAT-CAATGTACGGTGAAA-CGAGCAGCATCATTAGATCTACTACTTCTCTTTGGATATCCTCCGTAATAAAAGAAGAACGGAACAGATCGAATTACAACGGATTTATACTACAAGACG----------------AAGACGGAGCTCACACCGCACTCAGTACCT-ATATTCGAATTCTATGTCATTCCCTCGACATGT-TAAACGGCAAACATA-CGTTAAACATTGGCG--ACG-----TTTGTGACCATCG-TCGTTTGATG-AA-C--AGAAGA--ATA-AACGT
gi|6 : AAAGAGGAAACTATGTTGTAAAATTATCTTATAACAGAAGTTGAATGCTTATTTA-TCATTTACTCT-----A--ATAT-TTTTACTC-TT-GCTT---------ATTT-ATGGCGCCCTTATTG--A-TTTAACTTGCGCCAA---TTTAT-TATGC-T-GGCTTTA---T-GACGTCA--C-AAT-A-------------------ACGAACGT-CT-TAA--------------------------TACCAAC----TGTCCAACA--CAAAGAC-----T--GT-G----------TA-TTTGT-AATC-ATCTAC-A-----CT-CGGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGAGT-AAACT-GTAGATAATTATT
gi|7 : A-AACCAAATTTGAATGCT-ATTTAATCA-TTACT-TCAATTGTCATATGTGAAACCCATT-GCTA--------TA-TT-ATAGCG-CCTTATTG--AC--TAACTTGCGCCAA---CTTATAGATGC-TGGCCTTTA---T-GACGTCA--CAAATGA-------------------ACG-ACTT-TTGTAA----------------------CG--TAC--AC----AGT-CATAAACTAAAGAC-----T--GT-A----------T--TTTAA-AATC-A---ACAA-----TT-CTGAAGAAGGCCGACGAA-GTGTAA-A--GCTTT-C--T----AA----GTGG-T-TAA-T-GTAGATAATTAcagtcttcgttggaattt
gi|8 : a-ATGGTG-CCTCCTTGTGACATTCGTTTGCGCTAAAAGTTTAT----GC-T-AACTTTACTAT-GACGTCA--C-AAT-ATTTATTGTTCTAAAAGTTTACG-TTGTCCT-TAA----------------------TA--TAC--ATGTAATGT-CACAA--TAGCGACTTTAAT--AT-GTTATTGTTGTTG-TTTGA-AATT--------------CTGCTGAAGA--GCCG-TAAT-ACG-AA-A--GC--G-C--TTTAGAA------AA-T-AAA-T-GTgtcagtcatcgttgga
gi|9 : AAATAC-----T---T-G----------TA-TAT----AT---T-TAC-A-----CT-CTGAA-A--GC-GACAAG-GCG-AACA--AC--G-C--A----AA-GTGGCGATT-AAA-T-GTAGATTATTgaaatctttaactgactaatctttttctatactcttcctatgcctaggacttatttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAAGGCGAAAGCTCTCTAAATGTGAAATCTTCAGTCAACTTATTTTTTTCTATACTCTACCTAT
Alignments
lowQualScore : 1 1 1 1 1 11 1 1 4444444444444 1 4444444 9999999999999999999 1 4444444 1 111 33333 1 1 3333 11 1 333333333 1 1 222 11 1 1 11 1 111 1 1 111 1 1111 2222 11 1 1 11 11 11 333333 11 11 11 11 11 1 11 11111 1 333333333 111 3333333333333333333 6666666666666666666666666 11111111 11 2222222222222222222222 11111 11111
lowQualScore : 1 5 5 1 5 1 1 5 3 44 3 3 7 7 0 4444444444444 7 3 3333333 7 7777777777777777777 3 0 0000000 2 3 8 8 8 8 8 333 8 6 1 8 77 00000 0 0 0 7 3 0000 33 0 888888888 5 5 111 1 88 2 7 3 44 7 3 6 22 000 7 3 3 111 6 2 8888 0 6 0 8888 0 7 22 3 0 3 1 0 3 3 88 7 0 88 6 1 1 1 1 88 1 1 2 1 1 000000 1 88 88 88 1 1 2 99 44 5 88 66666 0 0 3 3 6 2 1 0 0 8 1 6 8 222222222 0 6 6 99 3 000 77 888 888 5 66 5 5 8888888888888888888 5 5 5 1111111111111111111111111 44444444 5 3 33 1111111111111111111111 88 99 33333 4 11111 4 2 2 55 1 44 3 7 55 55 3 55 7777 4444 7 3 3 3
lowQualScore : . . . . . . . . . .. . . . . . ............. . . ....... . ................... . . ....... . . . . . . . ... . . . . .. ..... . . . . . .... .. . ......... . . ... . .. . . . .. . . . .. ... . . . ... . . .... . . . .... . . .. . . . . . . . .. . . .. . . . . . .. . . . . . ...... . .. .. .. . . . .. .. . .. ..... . . . . . . . . . . . . . ......... . . . .. . ... .. ... ... . .. . . ................... . . . ......................... ........ . . .. ...................... .. .. ..... . ..... . . . .. . .. . . .. .. . .. .... .... . . . .
lowQualScore : 0 0 5 0 5 0 0 0 3 00 3 3 3 3 7 3333333333333 3 3 3333333 3 7777777777777777777 3 7 7777777 0 2 0 0 0 0 0 666 0 4 4 0 66 88888 0 2 0 0 2 2222 88 0 555555555 0 5 000 0 00 0 3 3 33 3 3 7 00 000 3 3 3 000 7 0 7777 7 7 7 3333 7 3 77 2 0 2 0 2 7 3 33 3 7 33 7 0 0 0 0 00 0 0 5 0 0 000000 0 55 00 00 0 0 5 33 00 5 33 00000 2 0 2 2 5 5 4 6 8 0 4 0 0 888888888 8 7 7 22 5 000 11 777 888 0 99 0 0 8888888888888888888 0 0 0 9999999999999999999999999 99999999 7 9 66 3333333333333333333333 00 33 77777 4 11111 4 0 5 00 3 22 6 3 00 00 6 00 7777 1111 3 6 6 6
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGGNAGCGATATATTNGACGATTNTTNCACTTTTTGGTCCAAATCACATAAATATTAGAAGACGTTTCATA-ATGTGATTGAACAGTTTA-CATCCC-CGATTCAATTTACGGTGAAAACGAGCAGCAC----AGA-CTA-TACCTCTCTTTGGATATCCTC-GTAATAAAAGAAGAAAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCGCAC----CTCAGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-TGACGANACG--T--TTTGT-ACCATCG-TCGTTTGATGAAA-C--AGAAGA--ATA-AACGTCTACAGGATTTTATTAACAACATTATTTACTTAGANACAGATATCCGAAGAAAATTAATAGATGTCGCT-ATT-AAAGAG-CTAGATCTATACCAATNNCAGAACTTCTGGAACTTCAGAAAAT-CGGGAACT-CAGGACGGAATCAGAGAANACGAATCCGCCTCCTGTCG----TAACTCGCAATCCGCGCGATATTAACATG-TATAATTNTGTTAAACAATGCTTTCCGATTTTACAAC-AA--TCCGAAAAACCTAAGGAGCGTCATTGAAAT--GAAGAACATTATCTACAGCCGACNTCAANCNCCNAGCCTAAAAAGAAACTNCTGACCAGAGCCAAATTCTCANCGAATNAGGGNAAAACTACAGTNTCAACAAATGTATGGTGACCCNCGCTGCGGNACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTTCTAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTTAT-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAACG------------------------TAC--AC----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
Reference ( family-438 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGGNAGCGATATATTNGACGATTNTTNCACTTTTTGGTCCAAATCACATAAATATTAGAAGACGTTTCATA-ATGTGATTGAACAGTTTA-CATCCC-CGATTCAATTTACGGTGAAAACGAGCAGCAC----AGA-CTA-TACCTCTCTTTGGATATCCTC-GTAATAAAAGAAGAAAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCGCAC----CTCAGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-TGACGANACG--T--TTTGT-ACCATCG-TCGTTTGATGAAA-C--AGAAGA--ATA-AACGTCTACAGGATTTTATTAACAACATTATTTACTTAGANACAGATATCCGAAGAAAATTAATAGATGTCGCT-ATTTAAAGAG-CTAGATCTATACCAATNNCAGAACTTCTGGAACTTCAGAAAAT-CGGGAACT-CAGGACGGAATCAGAGAANACGAATCCGCCTCCTGTCG----TAACTCGCAATCCGCGCGATATTAACATG-TATAATTNTGTTAAACAATGCTTTCCGATTTTACAAC-AA--TCCGAAAAACCTAAGGAGCGTCATTGAAAT--GAAGAACATTATCTACAGCCGACNTCAANCNCCNAGCCTAAAAAGAAACTNCTGACCAGAGCCAAATTCTCANCGAATNAGGGNAAAACTACAGTNTCAACAAATGTATGGTGACCCNCGCTGCGGNACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTTCTAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTTAT-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAACG------------------------TAC--AC----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
gi|1 : AGTTGCGCAATACATAAAATCTAACTGGAAGCGATAT-TTAGACGATTGTTTCATTTTTTGGTCCAAATCACATAAATATTAGAAGAC-TTTCATA-ATGTG-TTGAACAGTTTA-CATCCT-CGATTCAATTTACGGTGGAAACAAGCAGCAC----AGAACTA----CTTTTTTTGGATATCCTC-GTAATAAAAGAAGACAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCACAC----C--AGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAA-C-GC-AACATACCGTTTAACA-TGGCGAGACG--TGTTTTGT-ACCATCG-TCGTTTGATGAAAAC--AGAAGA--ATA-AACGTCTACAGGA----ATTAACAACATT-TTTACTTAGACACAAATATCCGAC-AAATTTAATATATATCGCT-AT--AGAGAGGCTAGATCTATACCAATCTCAGAACTTC-GGAACTTCAGAAAAT-CGGGAACT-CAGGATGGAATCAGA-AAT-CAAATCCACCTC--GTCG----TAACTCACAATCCGCGTAATATTAATATG-TATAATTCTGTTAAACAATGCTTTCCTATTTTATAAC-AA--TCCGAAAAATCTAAGGAGCATCATTGAAAT--GAAGAACATTATCTACAGTCGACTTCAACCTCCTAATCTAAAAAGAAACTACTGACCAGAGCCAAATTTTCAACCAATAAAGGAAAAACTACAGTTTC--CAAATGTATG--GATCCCCGTTGCAGTAC
gi|1 : cgattagatttcctcagccatatcccagaaacagttgaggttgataccaaaaatggctagttttgatgtcactcttgtataccaacataccacatacagaagcaattgcattctggatcgataaacaccaaagcgaaataatcctagattttccaaagactatcttagagggataaaattagtactagagaacaactattctatgttcggacaacaaacacttattacaaataaaaggaacagccatgggtactaaagtcgccccaacatatgctaccctagtactaggattcctagaggagaaattatttgaaaacacagacagattatttgaaaatcaGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTT-TAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATTT-A-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAATTGTCATAT-TTATATCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTT-T-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAANNNNNNNNNNNNNNNNNNNNNNNNNTTAC--AT----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATTctgccttatttaaaaaacaggagatactttcacgtttaaatgtggcaaaaactttcaccattcgaacaaattgtcatgtaaatccatgatttaatatattgcatgattttacctcctgcggagaaaattacataggagaccggaactaagttagctgaccgtgtgagagtccacaagcaaccgacacgggacccatccgtcaggaatacaccctgcagtaaacattttgatttatgtgctaatggaaactttttaattttttccgttctacaaagttttagaaaacaatgaaacatttacggagagcgaaagaagactattttgtaaaattatttaaaccgaagttgaatgctatttaatcatttactctcaattgtcatatttatatccattgctttatttatggcgccttattgactttaacttgcgccaatttttatgctgcctttatgacgtcacaataacgacgtcttaannnnnnnnnnnnnnnnnnnnnnnnnttacattgtcataacaaagactgtgtatttgaaatcattacactctgaagagccgacaaggcgaaagcgctaagtgtgataaatgtagataattatt
gi|10 : cgattagatttcctcagccatatcccagaaacagttgaggttgataccaaaaatggctagttttgatgtcactcttgtataccaacataccacatacagaagcaattgcattctggatcgataaacaccaaagcgaaataatcctagattttccaaagactatcttagagggataaaattagtactagagaacaactattctatgttcggacaacaaacacttattacaaataaaaggaacagccatgggtactaaagtcgccccaacatatgctaccctagtactaggattcctagaggagaaattatttgaaaacacagacagattatttgaaaatcaagttgcgcaatacataaaatctaactggaagcgatatttagacgattgtttcattttttggtccaaatcacataaatattagaagactttcataatgtgttgaacagtttacatcctcgattcaatttacggtggaaacaagcagcacagaactactttttttggatatcctcgtaataaaagaagacaggaaaattacaacggatttatactacaagaaaaacggactcacaccagtacctgatattcaattcttgtcatccctcacatgttaacgcaacataccgtttaacatggcgagacgtgttttgtaccatcgtcgtttgatgaaaacagaagaataaacgtctacaggaattaacaacatttttacttagacacaaatatccgacaaatttaatatatatcgctatagagaggctagatctataccaatctcagaacttcggaacttcagaaaatcgggaactcaggatggaatcagaaatcaaatccacctcgtcgtaactcacaatccgcgtaatattaatatgtataattctgttaaacaatgctttcctattttataacaatccgaaaaatctaaggagcatcattgaaatgaagaacattatctacagtcgacttcaacctcctaatctaaaaagaaactactgaccagagccaaattttcaaccaataaaggaaaaactacagtttccaaatgtatggatccccgttgcagtacctgccttatttaaaaaacaggagatactttcacgtttaaatgtggcaaaaactttcaccattcgaacaaattgtcatgtaaatccatgatttaatatattgcatgattttacctcctgcggagaaaattacataggagaccggaactaagttagctgaccgtgtgaga---TTTAT-TATGC---GCCTT-A---TCGACCTCATCC-ACT-A-------------------ACG-ACCT-CT-TAACG------------------------TAC--AC----T-T-CATAAA-CAAAGACC----T--GTCG----------TACTTTGT-AATCCAT-TAC-A-----CT-CATAAGA--CCCGACAAT-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-TAAAA-T-GTAAA
gi|11 : caagacAGTTATCATAT-CTAAACCTTTTAGCTTATCGATCTTATTTTATGGCG-CCTTATTG--ACTTTAACGTGCGCCAT---TTTAT-TATGCTT-ACCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT--T-TAAC-------------------------TAC--GA----TGT-CG------GAAGAT-----T--AA-G----------T--TTTAACAATG-AT-Tattttcatcatctgaat
gi|12 : TAAAATCAGCAGAA-ATTATCAACAACCGACGTCAAGCGCCAAGCCTAAAAA--AACTCCTAACTAGAGCCAAATTCTCACTGAATCAGGGTAAA--T---GTGTCAACAAA--TATGGTGACCCACGCTGCGGGACcat
gi|13 : AAAGAC-----T--GT-G----------TA-TTTG----TT-AC-TAC-ATACAGCT-C-GAA-A--GCCGACAAG-GCG-AA-AGGGC--G-C--T----AA-GT-GTGA-T-AAA-TGGCAGATAATTATT
gi|14 : atcttacattctgaagtGTCCACAAGCAACAAATACGGGACCCATTCGTCAGGAATACACCCTGCAGTAAATATTTTGATTTATGTGCTAATGCAAACTTTTTTAATTTTTT-CGTTCTACAAAGTTTTAGAAAActgtcaacgttggattttat
gi|15 : AAGA--GCCG-CAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATT
gi|16 : aA--GCCGACAAGTGCG-AACA--GC--GGC--T----AAAGT-GTGA-T-AAA-T-GTAGATAAATATTcctcagttcatcgttggattttattctttccctctacgttttacctataccatggacttttactacaaat
gi|17 : -AGTTCA-TGTCA-TCCTTC-ACGTAC-AAAAC-GT-AATACGCCATCAAATA-TAACAATACC--T--TTTcagtcatgcgttggattcttatcttttctctacgtaattacctatcacatggacagtt
gi|18 : tatATATGTACATG-TATAATTCTGTTAAACAATGCTtaatca
gi|18 : aAGCATCATTGAAAT--GAAGAACATTATCTACAagcatcattgaaatgaagaacattatctaca
gi|2 : aatatgtacatgtataattctgttaaacaatgctTTTCAAA-ATGT-ATTGAACAGTTTA-CATCCCTCAATTAAATTTACAGTGAAAACAAACAAAAC----AGA-A-A-TACCTCACATAGAA-ATCCTT-GTGCTAAAAGATTAAAGGAA-------A-TTACAATTTATTTGTACAGCAAAA--ACAAAAAACAAAACAAAAAACGAA-TTCGTA------TCAGTACCTAATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AATATACCGTTAAACA-TGACGATACGT-T--TTTGC-ATCATCG-TCG-TTGATGAAA----AAAATA--ATA-GATGTC
gi|2 : gatGAAAAAAAT-AATAGATGTCACT-ATTGAAAAAG-CTAGATCTATACCAATGGCATAACT-CTGGAACTCCAGAAAAT-CAAGGATT-CAGTATGAAATCAGAAAAAA---ATCCGCCTCCTGTTG----TAACTCACAATCCCCGTGATATTAACATG-TATAATTATATTAAACATTACTTTCCAACTTTACAGC-AA--TCCG-AGAACCTAAGGAGCGTCATactattgaaaaagctagatctataccaatggcataactctggaactccagaaaatcaaggattcagtatgaaatcagaaaaaaatccgcctcctgttgtaactcacaatccccgtgatattaacatgtataattatattaaacattactttccaactttacagcaatccgagaacctaaggagcgtcat
gi|20 : gattttcaaaatgtattgaacagtttacatccctcaattaaatttacagtgaaaacaaacaaaacagaaatacctcacatagaaatccttgtgctaaaagattaaaggaaattacaatttatttgtacagcaaaaacaaaaaacaaaacaaaaaacgaattcgtatcagtacctaatattcaattcttgtcatccctcacatgttaaacgcaatataccgttaaacatgacgatacgtttttgcatcatcgtcgttgatAGTTGCGCAATACATAAAATCTAACTGATAG-GATATATTTGATG-TTTTTACACTT
gi|21 : -TAC-A-----CT-CTGAAGA--GCCGGCAA--GCA-AA-A--GC--G-CTAT----AA-GA-GTGA-A-GAA-T-G-AGAccttta
gi|22 : -GCCTTTA---T-GACGTCA--C-AAT-A-------------------GCG-ACGT-CT-TTAC
gi|3 : AATACACCCTGCAGTGAACATTTTGATTTATATGCTAATGGAAACATT-CTAATTTTT-CCGTTCTATAAAGGTTTAGAAAACAATGAA-CATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTAT-TCA-AACCCAAGTTGAATGTT-ATTTAATCATTTGCATCCAGTGATCATAA-TTGAACCCATT-ACCT--------CATTT-ATGGAA-CCTTTTTG--ACTTTACGTTGCGCCAA---TCTAT-TTTGC-T-GCTTTTA---T-GACGTCA--C-AAT-A-------------------GCG-ATGT-CT-TAACA-------------------------AC--AA----TGG-CATAA--CAAATAC-----TACGT-G----------TA-TTTGA-AGTT-GT-TAC-A-----TT-CTGAATA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTTTTcaaa
gi|4 : ATAT-C-AATTCT-C-TCA-ACCCTC-CCATGGATAA---TC-AA-ATAC-GTGTAACC-CGATGGAACGGGT--GTTGT-AGCACCGATCACTTTCTGAAA-TCAAGAAGAGAATACAACGTCTA----ATTTTATTAA-AACATTATTTA---AGAGA--GATATCTAAAGAAAATTAATAGATGATGTTAATTTAAAG-G-CTA-ACCTATTCCAATTACAGAGCTTTTGAAACTTT----AATACGGGATCCACAAGAC--AAT-AGAGAACACGAATGGATACCCTATTGAACCTAATTAGC-ATGCGCGC-ATA-TAATATACTAT-ATTATGTTAAAAGATTCCTTCAGATTTTACAACTAAGTTCCGAAAAcagcaatcgttggatttt
gi|5 : ttAAGACGTTTCATAGATGTGATTGAACAGTTTAACATCCC-TGAT-CAATGTACGGTGAAA-CGAGCAGCATCATTAGATCTACTACTTCTCTTTGGATATCCTCCGTAATAAAAGAAGAACGGAACAGATCGAATTACAACGGATTTATACTACAAGACGA----------------AGACGGAGCTCACACCGCACTCAGTACCT-ATATTCGAATTCTATGTCATTCCCTCGACATGT-TAAACGGCAAACATA-CGTTAAACATTGGCG--ACG-----TTTGTGACCATCG-TCGTTTGATG-AA-C--AGAAGA--ATA-AACGT
gi|6 : AAAGAGGAAACTATGTTGTAAAATTATCTTATAACAGAAGTTGAATGCTTATTTA-TCATTTACTCT-----A--ATAT-TTTTACTC-TT-GCTT---------ATTT-ATGGCGCCCTTATTG--A-TTTAACTTGCGCCAA---TTTAT-TATGC-T-GGCTTTA---T-GACGTCA--C-AAT-A-------------------ACGAACGT-CT-TAA--------------------------TACCAAC----TGTCCAACA--CAAAGAC-----T--GT-G----------TA-TTTGT-AATC-ATCTAC-A-----CT-CGGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGAGT-AAACT-GTAGATAATTATT
gi|7 : A-AACCAAATTTGAATGCT-ATTTAATCA-TTACT-TCAATTGTCATATGTGAAACCCATT-GCTA--------TA-TT-ATAGCG-CCTTATTG--AC--TAACTTGCGCCAA---CTTATAGATGC-TGGCCTTTA---T-GACGTCA--CAAATGA-------------------ACG-ACTT-TTGTAACG------------------------TAC--AC----AGT-CATAAACTAAAGAC-----T--GT-A----------T--TTTAA-AATC-A---ACAA-----TT-CTGAAGAAGGCCGACGAA-GTGTAA-A--GCTTT-C--T----AA----GTGG-T-TAA-T-GTAGATAATTAcagtcttcgttggaattt
gi|8 : a-ATGGTG-CCTCCTTGTGACATTCGTTTGCGCTAAAAGTTTAT----GC-T-AACTTTACTAT-GACGTCA--C-AAT-ATTTATTGTTCTAAAAGTTTACG-TTGTCCT-TAATA------------------------TAC--ATGTAATGT-CACAA--TAGCGACTTTAAT--AT-GTTATTGTTGTTG-TTTGA-AATT--------------CTGCTGAAGA--GCCG-TAAT-ACG-AA-A--GC--G-C--TTTAGAA------AA-T-AAA-T-GTgtcagtcatcgttgga
gi|9 : AAATAC-----T---T-G----------TA-TAT----AT---T-TAC-A-----CT-CTGAA-A--GC-GACAAG-GCG-AACA--AC--G-C--A----AA-GTGGCGATT-AAA-T-GTAGATTATTgaaatctttaactgactaatctttttctatactcttcctatgcctaggacttatttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAAGGCGAAAGCTCTCTAAATGTGAAATCTTCAGTCAACTTATTTTTTTCTATACTCTACCTAT
Alignments
lowQualScore : 1 1 1 1 1 11 1 1 4444444444444 1 4444444 9999999999999999999 1 4444444 1 111 33333 1 1 3333 11 1 333333333 1 1 222 11 1 33333 1 111 1 1 111 1 1111 2222 11 1 1 11 11 11 333333 11 11 11 11 11 1 11 11111 1 333333333 111 3333333333333333333 6666666666666666666666666 11111111 11 2222222222222222222222 11111 11111
lowQualScore : 1 5 5 1 5 1 1 5 3 44 3 3 7 7 0 4444444444444 7 3 3333333 7 7777777777777777777 3 0 0000000 2 3 8 8 8 8 8 333 8 6 1 8 77 00000 0 0 0 7 3 0000 33 0 888888888 5 5 111 1 88 2 7 00000 7 3 6 22 000 7 3 3 111 6 2 8888 0 6 0 8888 0 7 22 3 0 3 1 0 3 3 88 7 0 88 6 1 1 1 1 88 1 1 2 1 1 000000 1 88 88 88 1 1 2 99 44 5 88 66666 0 0 3 3 6 2 1 0 0 8 1 6 8 222222222 0 6 6 99 3 000 77 888 888 5 66 5 5 8888888888888888888 5 5 5 1111111111111111111111111 44444444 5 3 33 1111111111111111111111 88 99 33333 4 11111 4 2 2 55 1 44 3 7 55 55 3 55 7777 4444 7 3 3 3
lowQualScore : . . . . . . . . . .. . . . . . ............. . . ....... . ................... . . ....... . . . . . . . ... . . . . .. ..... . . . . . .... .. . ......... . . ... . .. . . ..... . . . .. ... . . . ... . . .... . . . .... . . .. . . . . . . . .. . . .. . . . . . .. . . . . . ...... . .. .. .. . . . .. .. . .. ..... . . . . . . . . . . . . . ......... . . . .. . ... .. ... ... . .. . . ................... . . . ......................... ........ . . .. ...................... .. .. ..... . ..... . . . .. . .. . . .. .. . .. .... .... . . . .
lowQualScore : 0 0 5 0 5 0 0 0 3 00 3 3 3 3 7 3333333333333 3 3 3333333 3 7777777777777777777 3 7 7777777 0 2 0 0 0 0 0 666 0 4 4 0 66 88888 0 2 0 0 2 2222 88 0 555555555 0 5 000 0 00 0 3 00000 3 3 7 00 000 3 3 3 000 7 0 7777 7 7 7 3333 7 3 77 2 0 2 0 2 7 3 33 3 7 33 7 0 0 0 0 00 0 0 5 0 0 000000 0 55 00 00 0 0 5 33 00 5 33 00000 2 0 2 2 5 5 4 6 8 0 4 0 0 888888888 8 7 7 22 5 000 11 777 888 0 99 0 0 8888888888888888888 0 0 0 9999999999999999999999999 99999999 7 9 66 3333333333333333333333 00 33 77777 4 11111 4 0 5 00 3 22 6 3 00 00 6 00 7777 1111 3 6 6 6
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGGNAGCGATATATTNGACGATTNTTNCACTTTTTGGTCCAAATCACATAAATATTAGAAGACGTTTCATA-ATGTGATTGAACAGTTTA-CATCCC-CGATTCAATTTACGGTGAAAACGAGCAGCAC----AGA-CTA-TACCTCTCTTTGGATATCCTC-GTAATAAAAGAAGAAAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCGCAC----CTCAGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-TGACGANACG--T--TTTGT-ACCATCG-TCGTTTGATGAAA-C--AGAAGA--ATA-AACGTCTACAGGATTTTATTAACAACATTATTTACTTAGANACAGATATCCGAAGAAAATTAATAGATGTCGCTA--TT-AAAGAG-CTAGATCTATACCAATNNCAGAACTTCTGGAACTTCAGAAAAT-CGGGAACT-CAGGACGGAATCAGAGAANACGAATCCGCCTCCTGTCG----TAACTCGCAATCCGCGCGATATTAACATG-TATAATTNTGTTAAACAATGCTTTCCGATTTTACAAC-AA--TCCGAAAAACCTAAGGAGCGTCATTGAAAT--GAAGAACATTATCTACAGCCGACNTCAANCNCCNAGCCTAAAAAGAAACTNCTGACCAGAGCCAAATTCTCANCGAATNAGGGNAAAACTACAGTNTCAACAAATGTATGGTGACCCNCGCTGCGGNACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTTCTAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTTAT-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAACG------------------------TAC--AC----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
Reference ( family-438 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGGNAGCGATATATTNGACGATTNTTNCACTTTTTGGTCCAAATCACATAAATATTAGAAGACGTTTCATA-ATGTGATTGAACAGTTTA-CATCCC-CGATTCAATTTACGGTGAAAACGAGCAGCAC----AGA-CTA-TACCTCTCTTTGGATATCCTC-GTAATAAAAGAAGAAAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCGCAC----CTCAGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-TGACGANACG--T--TTTGT-ACCATCG-TCGTTTGATGAAA-C--AGAAGA--ATA-AACGTCTACAGGATTTTATTAACAACATTATTTACTTAGANACAGATATCCGAAGAAAATTAATAGATGTCGCTA--TT-AAAGAG-CTAGATCTATACCAATNNCAGAACTTCTGGAACTTCAGAAAAT-CGGGAACT-CAGGACGGAATCAGAGAANACGAATCCGCCTCCTGTCG----TAACTCGCAATCCGCGCGATATTAACATG-TATAATTNTGTTAAACAATGCTTTCCGATTTTACAAC-AA--TCCGAAAAACCTAAGGAGCGTCATTGAAAT--GAAGAACATTATCTACAGCCGACNTCAANCNCCNAGCCTAAAAAGAAACTNCTGACCAGAGCCAAATTCTCANCGAATNAGGGNAAAACTACAGTNTCAACAAATGTATGGTGACCCNCGCTGCGGNACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTTCTAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTTAT-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAACG------------------------TAC--AC----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
gi|1 : AGTTGCGCAATACATAAAATCTAACTGGAAGCGATAT-TTAGACGATTGTTTCATTTTTTGGTCCAAATCACATAAATATTAGAAGAC-TTTCATA-ATGTG-TTGAACAGTTTA-CATCCT-CGATTCAATTTACGGTGGAAACAAGCAGCAC----AGAACTA----CTTTTTTTGGATATCCTC-GTAATAAAAGAAGACAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCACAC----C--AGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAA-C-GC-AACATACCGTTTAACA-TGGCGAGACG--TGTTTTGT-ACCATCG-TCGTTTGATGAAAAC--AGAAGA--ATA-AACGTCTACAGGA----ATTAACAACATT-TTTACTTAGACACAAATATCCGAC-AAATTTAATATATATCGCTA--T--AGAGAGGCTAGATCTATACCAATCTCAGAACTTC-GGAACTTCAGAAAAT-CGGGAACT-CAGGATGGAATCAGA-AAT-CAAATCCACCTC--GTCG----TAACTCACAATCCGCGTAATATTAATATG-TATAATTCTGTTAAACAATGCTTTCCTATTTTATAAC-AA--TCCGAAAAATCTAAGGAGCATCATTGAAAT--GAAGAACATTATCTACAGTCGACTTCAACCTCCTAATCTAAAAAGAAACTACTGACCAGAGCCAAATTTTCAACCAATAAAGGAAAAACTACAGTTTC--CAAATGTATG--GATCCCCGTTGCAGTAC
gi|1 : cgattagatttcctcagccatatcccagaaacagttgaggttgataccaaaaatggctagttttgatgtcactcttgtataccaacataccacatacagaagcaattgcattctggatcgataaacaccaaagcgaaataatcctagattttccaaagactatcttagagggataaaattagtactagagaacaactattctatgttcggacaacaaacacttattacaaataaaaggaacagccatgggtactaaagtcgccccaacatatgctaccctagtactaggattcctagaggagaaattatttgaaaacacagacagattatttgaaaatcaGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTT-TAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATTT-A-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAATTGTCATAT-TTATATCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTT-T-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAANNNNNNNNNNNNNNNNNNNNNNNNNTTAC--AT----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATTctgccttatttaaaaaacaggagatactttcacgtttaaatgtggcaaaaactttcaccattcgaacaaattgtcatgtaaatccatgatttaatatattgcatgattttacctcctgcggagaaaattacataggagaccggaactaagttagctgaccgtgtgagagtccacaagcaaccgacacgggacccatccgtcaggaatacaccctgcagtaaacattttgatttatgtgctaatggaaactttttaattttttccgttctacaaagttttagaaaacaatgaaacatttacggagagcgaaagaagactattttgtaaaattatttaaaccgaagttgaatgctatttaatcatttactctcaattgtcatatttatatccattgctttatttatggcgccttattgactttaacttgcgccaatttttatgctgcctttatgacgtcacaataacgacgtcttaannnnnnnnnnnnnnnnnnnnnnnnnttacattgtcataacaaagactgtgtatttgaaatcattacactctgaagagccgacaaggcgaaagcgctaagtgtgataaatgtagataattatt
gi|10 : cgattagatttcctcagccatatcccagaaacagttgaggttgataccaaaaatggctagttttgatgtcactcttgtataccaacataccacatacagaagcaattgcattctggatcgataaacaccaaagcgaaataatcctagattttccaaagactatcttagagggataaaattagtactagagaacaactattctatgttcggacaacaaacacttattacaaataaaaggaacagccatgggtactaaagtcgccccaacatatgctaccctagtactaggattcctagaggagaaattatttgaaaacacagacagattatttgaaaatcaagttgcgcaatacataaaatctaactggaagcgatatttagacgattgtttcattttttggtccaaatcacataaatattagaagactttcataatgtgttgaacagtttacatcctcgattcaatttacggtggaaacaagcagcacagaactactttttttggatatcctcgtaataaaagaagacaggaaaattacaacggatttatactacaagaaaaacggactcacaccagtacctgatattcaattcttgtcatccctcacatgttaacgcaacataccgtttaacatggcgagacgtgttttgtaccatcgtcgtttgatgaaaacagaagaataaacgtctacaggaattaacaacatttttacttagacacaaatatccgacaaatttaatatatatcgctatagagaggctagatctataccaatctcagaacttcggaacttcagaaaatcgggaactcaggatggaatcagaaatcaaatccacctcgtcgtaactcacaatccgcgtaatattaatatgtataattctgttaaacaatgctttcctattttataacaatccgaaaaatctaaggagcatcattgaaatgaagaacattatctacagtcgacttcaacctcctaatctaaaaagaaactactgaccagagccaaattttcaaccaataaaggaaaaactacagtttccaaatgtatggatccccgttgcagtacctgccttatttaaaaaacaggagatactttcacgtttaaatgtggcaaaaactttcaccattcgaacaaattgtcatgtaaatccatgatttaatatattgcatgattttacctcctgcggagaaaattacataggagaccggaactaagttagctgaccgtgtgaga---TTTAT-TATGC---GCCTT-A---TCGACCTCATCC-ACT-A-------------------ACG-ACCT-CT-TAACG------------------------TAC--AC----T-T-CATAAA-CAAAGACC----T--GTCG----------TACTTTGT-AATCCAT-TAC-A-----CT-CATAAGA--CCCGACAAT-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-TAAAA-T-GTAAA
gi|11 : caagacAGTTATCATAT-CTAAACCTTTTAGCTTATCGATCTTATTTTATGGCG-CCTTATTG--ACTTTAACGTGCGCCAT---TTTAT-TATGCTT-ACCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT--T-TAAC-------------------------TAC--GA----TGT-CG------GAAGAT-----T--AA-G----------T--TTTAACAATG-AT-Tattttcatcatctgaat
gi|12 : TAAAATCAGCAGAA-ATTATCAACAACCGACGTCAAGCGCCAAGCCTAAAAA--AACTCCTAACTAGAGCCAAATTCTCACTGAATCAGGGTAAA--T---GTGTCAACAAA--TATGGTGACCCACGCTGCGGGACcat
gi|13 : AAAGAC-----T--GT-G----------TA-TTTG----TT-AC-TAC-ATACAGCT-C-GAA-A--GCCGACAAG-GCG-AA-AGGGC--G-C--T----AA-GT-GTGA-T-AAA-TGGCAGATAATTATT
gi|14 : atcttacattctgaagtGTCCACAAGCAACAAATACGGGACCCATTCGTCAGGAATACACCCTGCAGTAAATATTTTGATTTATGTGCTAATGCAAACTTTTTTAATTTTTT-CGTTCTACAAAGTTTTAGAAAActgtcaacgttggattttat
gi|15 : AAGA--GCCG-CAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATT
gi|16 : aA--GCCGACAAGTGCG-AACA--GC--GGC--T----AAAGT-GTGA-T-AAA-T-GTAGATAAATATTcctcagttcatcgttggattttattctttccctctacgttttacctataccatggacttttactacaaat
gi|17 : -AGTTCA-TGTCA-TCCTTC-ACGTAC-AAAAC-GT-AATACGCCATCAAATA-TAACAATACC--T--TTTcagtcatgcgttggattcttatcttttctctacgtaattacctatcacatggacagtt
gi|18 : tatATATGTACATG-TATAATTCTGTTAAACAATGCTtaatca
gi|18 : aAGCATCATTGAAAT--GAAGAACATTATCTACAagcatcattgaaatgaagaacattatctaca
gi|2 : aatatgtacatgtataattctgttaaacaatgctTTTCAAA-ATGT-ATTGAACAGTTTA-CATCCCTCAATTAAATTTACAGTGAAAACAAACAAAAC----AGA-A-A-TACCTCACATAGAA-ATCCTT-GTGCTAAAAGATTAAAGGAA-------A-TTACAATTTATTTGTACAGCAAAA--ACAAAAAACAAAACAAAAAACGAA-TTCGTA------TCAGTACCTAATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AATATACCGTTAAACA-TGACGATACGT-T--TTTGC-ATCATCG-TCG-TTGATGAAA----AAAATA--ATA-GATGTC
gi|2 : gatGAAAAAAAT-AATAGATGTCACTA--TTGAAAAAG-CTAGATCTATACCAATGGCATAACT-CTGGAACTCCAGAAAAT-CAAGGATT-CAGTATGAAATCAGAAAAAA---ATCCGCCTCCTGTTG----TAACTCACAATCCCCGTGATATTAACATG-TATAATTATATTAAACATTACTTTCCAACTTTACAGC-AA--TCCG-AGAACCTAAGGAGCGTCATactattgaaaaagctagatctataccaatggcataactctggaactccagaaaatcaaggattcagtatgaaatcagaaaaaaatccgcctcctgttgtaactcacaatccccgtgatattaacatgtataattatattaaacattactttccaactttacagcaatccgagaacctaaggagcgtcat
gi|20 : gattttcaaaatgtattgaacagtttacatccctcaattaaatttacagtgaaaacaaacaaaacagaaatacctcacatagaaatccttgtgctaaaagattaaaggaaattacaatttatttgtacagcaaaaacaaaaaacaaaacaaaaaacgaattcgtatcagtacctaatattcaattcttgtcatccctcacatgttaaacgcaatataccgttaaacatgacgatacgtttttgcatcatcgtcgttgatAGTTGCGCAATACATAAAATCTAACTGATAG-GATATATTTGATG-TTTTTACACTT
gi|21 : -TAC-A-----CT-CTGAAGA--GCCGGCAA--GCA-AA-A--GC--G-CTAT----AA-GA-GTGA-A-GAA-T-G-AGAccttta
gi|22 : -GCCTTTA---T-GACGTCA--C-AAT-A-------------------GCG-ACGT-CT-TTAC
gi|3 : AATACACCCTGCAGTGAACATTTTGATTTATATGCTAATGGAAACATT-CTAATTTTT-CCGTTCTATAAAGGTTTAGAAAACAATGAA-CATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTAT-TCA-AACCCAAGTTGAATGTT-ATTTAATCATTTGCATCCAGTGATCATAA-TTGAACCCATT-ACCT--------CATTT-ATGGAA-CCTTTTTG--ACTTTACGTTGCGCCAA---TCTAT-TTTGC-T-GCTTTTA---T-GACGTCA--C-AAT-A-------------------GCG-ATGT-CT-TAACA-------------------------AC--AA----TGG-CATAA--CAAATAC-----TACGT-G----------TA-TTTGA-AGTT-GT-TAC-A-----TT-CTGAATA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTTTTcaaa
gi|4 : ATAT-C-AATTCT-C-TCA-ACCCTC-CCATGGATAA---TC-AA-ATAC-GTGTAACC-CGATGGAACGGGT--GTTGT-AGCACCGATCACTTTCTGAAA-TCAAGAAGAGAATACAACGTCTA----ATTTTATTAA-AACATTATTTA---AGAGA--GATATCTAAAGAAAATTAATAGATGATGTTAATTT-AAAG-G-CTA-ACCTATTCCAATTACAGAGCTTTTGAAACTTT----AATACGGGATCCACAAGAC--AAT-AGAGAACACGAATGGATACCCTATTGAACCTAATTAGC-ATGCGCGC-ATA-TAATATACTAT-ATTATGTTAAAAGATTCCTTCAGATTTTACAACTAAGTTCCGAAAAcagcaatcgttggatttt
gi|5 : ttAAGACGTTTCATAGATGTGATTGAACAGTTTAACATCCC-TGAT-CAATGTACGGTGAAA-CGAGCAGCATCATTAGATCTACTACTTCTCTTTGGATATCCTCCGTAATAAAAGAAGAACGGAACAGATCGAATTACAACGGATTTATACTACAAGACGA----------------AGACGGAGCTCACACCGCACTCAGTACCT-ATATTCGAATTCTATGTCATTCCCTCGACATGT-TAAACGGCAAACATA-CGTTAAACATTGGCG--ACG-----TTTGTGACCATCG-TCGTTTGATG-AA-C--AGAAGA--ATA-AACGT
gi|6 : AAAGAGGAAACTATGTTGTAAAATTATCTTATAACAGAAGTTGAATGCTTATTTA-TCATTTACTCT-----A--ATAT-TTTTACTC-TT-GCTT---------ATTT-ATGGCGCCCTTATTG--A-TTTAACTTGCGCCAA---TTTAT-TATGC-T-GGCTTTA---T-GACGTCA--C-AAT-A-------------------ACGAACGT-CT-TAA--------------------------TACCAAC----TGTCCAACA--CAAAGAC-----T--GT-G----------TA-TTTGT-AATC-ATCTAC-A-----CT-CGGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGAGT-AAACT-GTAGATAATTATT
gi|7 : A-AACCAAATTTGAATGCT-ATTTAATCA-TTACT-TCAATTGTCATATGTGAAACCCATT-GCTA--------TA-TT-ATAGCG-CCTTATTG--AC--TAACTTGCGCCAA---CTTATAGATGC-TGGCCTTTA---T-GACGTCA--CAAATGA-------------------ACG-ACTT-TTGTAACG------------------------TAC--AC----AGT-CATAAACTAAAGAC-----T--GT-A----------T--TTTAA-AATC-A---ACAA-----TT-CTGAAGAAGGCCGACGAA-GTGTAA-A--GCTTT-C--T----AA----GTGG-T-TAA-T-GTAGATAATTAcagtcttcgttggaattt
gi|8 : a-ATGGTG-CCTCCTTGTGACATTCGTTTGCGCTAAAAGTTTAT----GC-T-AACTTTACTAT-GACGTCA--C-AAT-ATTTATTGTTCTAAAAGTTTACG-TTGTCCT-TAATA------------------------TAC--ATGTAATGT-CACAA--TAGCGACTTTAAT--AT-GTTATTGTTGTTG-TTTGA-AATT--------------CTGCTGAAGA--GCCG-TAAT-ACG-AA-A--GC--G-C--TTTAGAA------AA-T-AAA-T-GTgtcagtcatcgttgga
gi|9 : AAATAC-----T---T-G----------TA-TAT----AT---T-TAC-A-----CT-CTGAA-A--GC-GACAAG-GCG-AACA--AC--G-C--A----AA-GTGGCGATT-AAA-T-GTAGATTATTgaaatctttaactgactaatctttttctatactcttcctatgcctaggacttatttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAAGGCGAAAGCTCTCTAAATGTGAAATCTTCAGTCAACTTATTTTTTTCTATACTCTACCTAT
Alignments
lowQualScore : 1 1 1 1 1 11 1 1 4444444444444 1 4444444 9999999999999999999 1 4444444 1 111 33333 1 1 3333 11 1 333333333 1 1 222 11 1 33333 1 111 1 1 111 1 1111 2222 11 1 1 11 11 11 333333 11 11 11 11 11 1 11 11111 1 333333333 111 3333333333333333333 6666666666666666666666666 11111111 11 2222222222222222222222 11111 11111
lowQualScore : 1 5 5 1 5 1 1 5 3 44 3 3 7 7 0 4444444444444 7 3 3333333 7 7777777777777777777 3 0 0000000 2 3 8 8 8 8 8 333 8 6 1 8 77 00000 0 0 0 7 3 0000 33 0 888888888 5 5 111 1 88 2 7 00000 7 3 6 22 000 7 3 3 111 6 2 8888 0 6 0 8888 0 7 22 3 0 3 1 0 3 3 88 7 0 88 6 1 1 1 1 88 1 1 2 1 1 000000 1 88 88 88 1 1 2 99 44 5 88 66666 0 0 3 3 6 2 1 0 0 8 1 6 8 222222222 0 6 6 99 3 000 77 888 888 5 66 5 5 8888888888888888888 5 5 5 1111111111111111111111111 44444444 5 3 33 1111111111111111111111 88 99 33333 4 11111 4 2 2 55 1 44 3 7 55 55 3 55 7777 4444 7 3 3 3
lowQualScore : . . . . . . . . . .. . . . . . ............. . . ....... . ................... . . ....... . . . . . . . ... . . . . .. ..... . . . . . .... .. . ......... . . ... . .. . . ..... . . . .. ... . . . ... . . .... . . . .... . . .. . . . . . . . .. . . .. . . . . . .. . . . . . ...... . .. .. .. . . . .. .. . .. ..... . . . . . . . . . . . . . ......... . . . .. . ... .. ... ... . .. . . ................... . . . ......................... ........ . . .. ...................... .. .. ..... . ..... . . . .. . .. . . .. .. . .. .... .... . . . .
lowQualScore : 0 0 5 0 5 0 0 0 3 00 3 3 3 3 7 3333333333333 3 3 3333333 3 7777777777777777777 3 7 7777777 0 2 0 0 0 0 0 666 0 4 4 0 66 88888 0 2 0 0 2 2222 88 0 555555555 0 5 000 0 00 0 3 00000 3 3 7 00 000 3 3 3 000 7 0 7777 7 7 7 3333 7 3 77 2 0 2 0 2 7 3 33 3 7 33 7 0 0 0 0 00 0 0 5 0 0 000000 0 55 00 00 0 0 5 33 00 5 33 00000 2 0 2 2 5 5 4 6 8 0 4 0 0 888888888 8 7 7 22 5 000 11 777 888 0 99 0 0 8888888888888888888 0 0 0 9999999999999999999999999 99999999 7 9 66 3333333333333333333333 00 33 77777 4 11111 4 0 5 00 3 22 6 3 00 00 6 00 7777 1111 3 6 6 6
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGGNAGCGATATATTNGACGATTNTTNCACTTTTTGGTCCAAATCACATAAATATTAGAAGACGTTTCATA-ATGTGATTGAACAGTTTA-CATCCC-CGATTCAATTTACGGTGAAAACGAGCAGCAC----AGA-CTA-TACCTCTCTTTGGATATCCTC-GTAATAAAAGAAGAAAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCGCAC----CTCAGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-TGACGANACG--T--TTTGT-ACCATCG-TCGTTTGATGAAA-C--AGAAGA--ATA-AACGTCTACAGGATTTTATTAACAACATTATTTACTTAGANACAGATATCCGAAGAAAATTAATAGATGTCGCTA--TT-AAAGAG-CTAGATCTATACCAATNNCAGAACTTCTGGAACTTCAGAAAAT-CGGGAACT-CAGGACGGAATCAGAGAANACGAATCCGCCTCCTGTCG----TAACTCGCAATCCGCGCGATATTAACATG-TATAATTNTGTTAAACAATGCTTTCCGATTTTACAAC-AA--TCCGAAAAACCTAAGGAGCGTCATTGAAAT--GAAGAACATTATCTACAGCCGACNTCAANCNCCNAGCCTAAAAAGAAACTNCTGACCAGAGCCAAATTCTCANCGAATNAGGGNAAAACTACAGTNTCAACAAATGTATGGTGACCCNCGCTGCGGNACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTTCTAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTTAT-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAACG------------------------TAC--AC----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
Reference ( family-438 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGGNAGCGATATATTNGACGATTNTTNCACTTTTTGGTCCAAATCACATAAATATTAGAAGACGTTTCATA-ATGTGATTGAACAGTTTA-CATCCC-CGATTCAATTTACGGTGAAAACGAGCAGCAC----AGA-CTA-TACCTCTCTTTGGATATCCTC-GTAATAAAAGAAGAAAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCGCAC----CTCAGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-TGACGANACG--T--TTTGT-ACCATCG-TCGTTTGATGAAA-C--AGAAGA--ATA-AACGTCTACAGGATTTTATTAACAACATTATTTACTTAGANACAGATATCCGAAGAAAATTAATAGATGTCGCTA--TT-AAAGAG-CTAGATCTATACCAATNNCAGAACTTCTGGAACTTCAGAAAAT-CGGGAACT-CAGGACGGAATCAGAGAANACGAATCCGCCTCCTGTCG----TAACTCGCAATCCGCGCGATATTAACATG-TATAATTNTGTTAAACAATGCTTTCCGATTTTACAAC-AA--TCCGAAAAACCTAAGGAGCGTCATTGAAAT--GAAGAACATTATCTACAGCCGACNTCAANCNCCNAGCCTAAAAAGAAACTNCTGACCAGAGCCAAATTCTCANCGAATNAGGGNAAAACTACAGTNTCAACAAATGTATGGTGACCCNCGCTGCGGNACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTTCTAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTTAT-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAACG------------------------TAC--AC----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
gi|1 : AGTTGCGCAATACATAAAATCTAACTGGAAGCGATAT-TTAGACGATTGTTTCATTTTTTGGTCCAAATCACATAAATATTAGAAGAC-TTTCATA-ATGTG-TTGAACAGTTTA-CATCCT-CGATTCAATTTACGGTGGAAACAAGCAGCAC----AGAACTA----CTTTTTTTGGATATCCTC-GTAATAAAAGAAGACAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCACAC----C--AGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAA-C-GC-AACATACCGTTTAACA-TGGCGAGACG--TGTTTTGT-ACCATCG-TCGTTTGATGAAAAC--AGAAGA--ATA-AACGTCTACAGGA----ATTAACAACATT-TTTACTTAGACACAAATATCCGAC-AAATTTAATATATATCGCTA--T--AGAGAGGCTAGATCTATACCAATCTCAGAACTTC-GGAACTTCAGAAAAT-CGGGAACT-CAGGATGGAATCAGA-AAT-CAAATCCACCTC--GTCG----TAACTCACAATCCGCGTAATATTAATATG-TATAATTCTGTTAAACAATGCTTTCCTATTTTATAAC-AA--TCCGAAAAATCTAAGGAGCATCATTGAAAT--GAAGAACATTATCTACAGTCGACTTCAACCTCCTAATCTAAAAAGAAACTACTGACCAGAGCCAAATTTTCAACCAATAAAGGAAAAACTACAGTTTC--CAAATGTATG--GATCCCCGTTGCAGTAC
gi|1 : cgattagatttcctcagccatatcccagaaacagttgaggttgataccaaaaatggctagttttgatgtcactcttgtataccaacataccacatacagaagcaattgcattctggatcgataaacaccaaagcgaaataatcctagattttccaaagactatcttagagggataaaattagtactagagaacaactattctatgttcggacaacaaacacttattacaaataaaaggaacagccatgggtactaaagtcgccccaacatatgctaccctagtactaggattcctagaggagaaattatttgaaaacacagacagattatttgaaaatcaGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTT-TAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATTT-A-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAATTGTCATAT-TTATATCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTT-T-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAANNNNNNNNNNNNNNNNNNNNNNNNNTTAC--AT----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATTctgccttatttaaaaaacaggagatactttcacgtttaaatgtggcaaaaactttcaccattcgaacaaattgtcatgtaaatccatgatttaatatattgcatgattttacctcctgcggagaaaattacataggagaccggaactaagttagctgaccgtgtgagagtccacaagcaaccgacacgggacccatccgtcaggaatacaccctgcagtaaacattttgatttatgtgctaatggaaactttttaattttttccgttctacaaagttttagaaaacaatgaaacatttacggagagcgaaagaagactattttgtaaaattatttaaaccgaagttgaatgctatttaatcatttactctcaattgtcatatttatatccattgctttatttatggcgccttattgactttaacttgcgccaatttttatgctgcctttatgacgtcacaataacgacgtcttaannnnnnnnnnnnnnnnnnnnnnnnnttacattgtcataacaaagactgtgtatttgaaatcattacactctgaagagccgacaaggcgaaagcgctaagtgtgataaatgtagataattatt
gi|10 : cgattagatttcctcagccatatcccagaaacagttgaggttgataccaaaaatggctagttttgatgtcactcttgtataccaacataccacatacagaagcaattgcattctggatcgataaacaccaaagcgaaataatcctagattttccaaagactatcttagagggataaaattagtactagagaacaactattctatgttcggacaacaaacacttattacaaataaaaggaacagccatgggtactaaagtcgccccaacatatgctaccctagtactaggattcctagaggagaaattatttgaaaacacagacagattatttgaaaatcaagttgcgcaatacataaaatctaactggaagcgatatttagacgattgtttcattttttggtccaaatcacataaatattagaagactttcataatgtgttgaacagtttacatcctcgattcaatttacggtggaaacaagcagcacagaactactttttttggatatcctcgtaataaaagaagacaggaaaattacaacggatttatactacaagaaaaacggactcacaccagtacctgatattcaattcttgtcatccctcacatgttaacgcaacataccgtttaacatggcgagacgtgttttgtaccatcgtcgtttgatgaaaacagaagaataaacgtctacaggaattaacaacatttttacttagacacaaatatccgacaaatttaatatatatcgctatagagaggctagatctataccaatctcagaacttcggaacttcagaaaatcgggaactcaggatggaatcagaaatcaaatccacctcgtcgtaactcacaatccgcgtaatattaatatgtataattctgttaaacaatgctttcctattttataacaatccgaaaaatctaaggagcatcattgaaatgaagaacattatctacagtcgacttcaacctcctaatctaaaaagaaactactgaccagagccaaattttcaaccaataaaggaaaaactacagtttccaaatgtatggatccccgttgcagtacctgccttatttaaaaaacaggagatactttcacgtttaaatgtggcaaaaactttcaccattcgaacaaattgtcatgtaaatccatgatttaatatattgcatgattttacctcctgcggagaaaattacataggagaccggaactaagttagctgaccgtgtgaga---TTTAT-TATGC---GCCTT-A---TCGACCTCATCC-ACT-A-------------------ACG-ACCT-CT-TAACG------------------------TAC--AC----T-T-CATAAA-CAAAGACC----T--GTCG----------TACTTTGT-AATCCAT-TAC-A-----CT-CATAAGA--CCCGACAAT-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-TAAAA-T-GTAAA
gi|11 : caagacAGTTATCATAT-CTAAACCTTTTAGCTTATCGATCTTATTTTATGGCG-CCTTATTG--ACTTTAACGTGCGCCAT---TTTAT-TATGCTT-ACCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT--T-TAAC-------------------------TAC--GA----TGT-CG------GAAGAT-----T--AA-G----------T--TTTAACAATG-AT-Tattttcatcatctgaat
gi|12 : TAAAATCAGCAGAA-ATTATCAACAACCGACGTCAAGCGCCAAGCCTAAAAA--AACTCCTAACTAGAGCCAAATTCTCACTGAATCAGGGTAAA--T---GTGTCAACAAA--TATGGTGACCCACGCTGCGGGACcat
gi|13 : AAAGAC-----T--GT-G----------TA-TTTG----TT-AC-TAC-ATACAGCT-C-GAA-A--GCCGACAAG-GCG-AA-AGGGC--G-C--T----AA-GT-GTGA-T-AAA-TGGCAGATAATTATT
gi|14 : atcttacattctgaagtGTCCACAAGCAACAAATACGGGACCCATTCGTCAGGAATACACCCTGCAGTAAATATTTTGATTTATGTGCTAATGCAAACTTTTTTAATTTTTT-CGTTCTACAAAGTTTTAGAAAActgtcaacgttggattttat
gi|15 : AAGA--GCCG-CAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATT
gi|16 : aA--GCCGACAAGTGCG-AACA--GC--GGC--T----AAAGT-GTGA-T-AAA-T-GTAGATAAATATTcctcagttcatcgttggattttattctttccctctacgttttacctataccatggacttttactacaaat
gi|17 : -AGTTCA-TGTCA-TCCTTC-ACGTAC-AAAAC-GT-AATACGCCATCAAATA-TAACAATACC--T--TTTcagtcatgcgttggattcttatcttttctctacgtaattacctatcacatggacagtt
gi|18 : tatATATGTACATG-TATAATTCTGTTAAACAATGCTtaatca
gi|18 : aAGCATCATTGAAAT--GAAGAACATTATCTACAagcatcattgaaatgaagaacattatctaca
gi|2 : aatatgtacatgtataattctgttaaacaatgctTTTCAAA-ATGT-ATTGAACAGTTTA-CATCCCTCAATTAAATTTACAGTGAAAACAAACAAAAC----AGA-A-A-TACCTCACATAGAA-ATCCTT-GTGCTAAAAGATTAAAGGAA-------A-TTACAATTTATTTGTACAGCAAAA--ACAAAAAACAAAACAAAAAACGAA-TTCGTA------TCAGTACCTAATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AATATACCGTTAAACA-TGACGATACGT-T--TTTGC-ATCATCG-TCG-TTGATGAAA----AAAATA--ATA-GATGTC
gi|2 : gatGAAAAAAAT-AATAGATGTCACTA--TTGAAAAAG-CTAGATCTATACCAATGGCATAACT-CTGGAACTCCAGAAAAT-CAAGGATT-CAGTATGAAATCAGAAAAAA---ATCCGCCTCCTGTTG----TAACTCACAATCCCCGTGATATTAACATG-TATAATTATATTAAACATTACTTTCCAACTTTACAGC-AA--TCCG-AGAACCTAAGGAGCGTCATactattgaaaaagctagatctataccaatggcataactctggaactccagaaaatcaaggattcagtatgaaatcagaaaaaaatccgcctcctgttgtaactcacaatccccgtgatattaacatgtataattatattaaacattactttccaactttacagcaatccgagaacctaaggagcgtcat
gi|20 : gattttcaaaatgtattgaacagtttacatccctcaattaaatttacagtgaaaacaaacaaaacagaaatacctcacatagaaatccttgtgctaaaagattaaaggaaattacaatttatttgtacagcaaaaacaaaaaacaaaacaaaaaacgaattcgtatcagtacctaatattcaattcttgtcatccctcacatgttaaacgcaatataccgttaaacatgacgatacgtttttgcatcatcgtcgttgatAGTTGCGCAATACATAAAATCTAACTGATAG-GATATATTTGATG-TTTTTACACTT
gi|21 : -TAC-A-----CT-CTGAAGA--GCCGGCAA--GCA-AA-A--GC--G-CTAT----AA-GA-GTGA-A-GAA-T-G-AGAccttta
gi|22 : -GCCTTTA---T-GACGTCA--C-AAT-A-------------------GCG-ACGT-CT-TTAC
gi|3 : AATACACCCTGCAGTGAACATTTTGATTTATATGCTAATGGAAACATT-CTAATTTTT-CCGTTCTATAAAGGTTTAGAAAACAATGAA-CATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTAT-TCA-AACCCAAGTTGAATGTT-ATTTAATCATTTGCATCCAGTGATCATAA-TTGAACCCATT-ACCT--------CATTT-ATGGAA-CCTTTTTG--ACTTTACGTTGCGCCAA---TCTAT-TTTGC-T-GCTTTTA---T-GACGTCA--C-AAT-A-------------------GCG-ATGT-CT-TAACA-------------------------AC--AA----TGG-CATAA--CAAATAC-----TACGT-G----------TA-TTTGA-AGTT-GT-TAC-A-----TT-CTGAATA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTTTTcaaa
gi|4 : ATAT-C-AATTCT-C-TCA-ACCCTC-CCATGGATAA---TC-AA-ATAC-GTGTAACC-CGATGGAACGGGT--GTTGT-AGCACCGATCACTTTCTGAAA-TCAAGAAGAGAATACAACGTCTA----ATTTTATTAA-AACATTATTTA---AGAGA--GATATCTAAAGAAAATTAATAGATGATGTTAATTT-AAAG-G-CTA-ACCTATTCCAATTACAGAGCTTTTGAAACTTT----AATACGGGATCCACAAGAC--AAT-AGAGAACACGAATGGATACCCTATTGAACCTAATTAGC-ATGCGCGC-ATA-TAATATACTAT-ATTATGTTAAAAGATTCCTTCAGATTTTACAACTAAGTTCCGAAAAcagcaatcgttggatttt
gi|5 : ttAAGACGTTTCATAGATGTGATTGAACAGTTTAACATCCC-TGAT-CAATGTACGGTGAAA-CGAGCAGCATCATTAGATCTACTACTTCTCTTTGGATATCCTCCGTAATAAAAGAAGAACGGAACAGATCGAATTACAACGGATTTATACTACAAGACGA----------------AGACGGAGCTCACACCGCACTCAGTACCT-ATATTCGAATTCTATGTCATTCCCTCGACATGT-TAAACGGCAAACATA-CGTTAAACATTGGCG--ACG-----TTTGTGACCATCG-TCGTTTGATG-AA-C--AGAAGA--ATA-AACGT
gi|6 : AAAGAGGAAACTATGTTGTAAAATTATCTTATAACAGAAGTTGAATGCTTATTTA-TCATTTACTCT-----A--ATAT-TTTTACTC-TT-GCTT---------ATTT-ATGGCGCCCTTATTG--A-TTTAACTTGCGCCAA---TTTAT-TATGC-T-GGCTTTA---T-GACGTCA--C-AAT-A-------------------ACGAACGT-CT-TAA--------------------------TACCAAC----TGTCCAACA--CAAAGAC-----T--GT-G----------TA-TTTGT-AATC-ATCTAC-A-----CT-CGGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGAGT-AAACT-GTAGATAATTATT
gi|7 : A-AACCAAATTTGAATGCT-ATTTAATCA-TTACT-TCAATTGTCATATGTGAAACCCATT-GCTA--------TA-TT-ATAGCG-CCTTATTG--AC--TAACTTGCGCCAA---CTTATAGATGC-TGGCCTTTA---T-GACGTCA--CAAATGA-------------------ACG-ACTT-TTGTAACG------------------------TAC--AC----AGT-CATAAACTAAAGAC-----T--GT-A----------T--TTTAA-AATC-A---ACAA-----TT-CTGAAGAAGGCCGACGAA-GTGTAA-A--GCTTT-C--T----AA----GTGG-T-TAA-T-GTAGATAATTAcagtcttcgttggaattt
gi|8 : a-ATGGTG-CCTCCTTGTGACATTCGTTTGCGCTAAAAGTTTAT----GC-T-AACTTTACTAT-GACGTCA--C-AAT-ATTTATTGTTCTAAAAGTTTACG-TTGTCCT-TAATA------------------------TAC--ATGTAATGT-CACAA--TAGCGACTTTAAT--AT-GTTATTGTTGTTG-TTTGA-AATT--------------CTGCTGAAGA--GCCG-TAAT-ACG-AA-A--GC--G-C--TTTAGAA------AA-T-AAA-T-GTgtcagtcatcgttgga
gi|9 : AAATAC-----T---T-G----------TA-TAT----AT---T-TAC-A-----CT-CTGAA-A--GC-GACAAG-GCG-AACA--AC--G-C--A----AA-GTGGCGATT-AAA-T-GTAGATTATTgaaatctttaactgactaatctttttctatactcttcctatgcctaggacttatttt
blockSeqs : T . A T . T A G G GA A T T A CATTAGATCTACT T C CAGATCG A ACAAAAAACAAAACAAA G CCGCACT A T G A T G A ACG A T A T AT GGT G A C A TCA GA C ATTTT . A . G . A T ATTT A . G GG TTT A A A TGA C A CACG C AACC A TG T C A C A T GT A CA C G G G A . C C G C T T G AA . GT A G A TT T . AA CTTAT T A T T C G G A T A ATCGATCTT T C TG T AAG AG TT CTA C TC A G TTTATTGTTCTAAAAGTTT A C G G ATGTAA C T AC TTTAATATGTTATTGTTGT AC AC CCAT A TACAG G A G AG A GT T C GG TT G TA TTAG AGT G A C G
blockSeqs : . A . . . . AGAAAT . . . . CGA . T . T . . . . . AC . T A . AT TT . . T A C . . G . TTG . . . TA CT . . . C . G AA C . . C T . A A G . . . . . C C . TCA . A T C C G . A A . C . . . T . T TG . . . . . . . . . A CAAC . T A CTGTCG A T CATC . . . T G . A T . C . . . . . GTG T . . .
blockSeqs : . . . . . . AC . C T . GA T . . . . . . . . . . A . . . . . A . T A . T . . . T . T T . . . . . . . . . G AC . A . TACGTG A A GAT . . . T G . A G . . . . . . . GT . . . .
blockSeqs : . . . . . . . . A . . . . . A . . . . . . A . T T . . . . . . . . . A GA . T . TAAG A T TAC . . . G T . G G . . . . . . . GT . . . .
blockSeqs : . . . . . T T . . . . . . . . . . AA . C . TGTG G A TGT . . . T G . A G . . . . . . . GT . . . .
blockSeqs : . . . . . . . . . . . . . AC . . . TGTG A A CA . . . T G . A G . . . . . . . GA . . . .
blockSeqs : . . . . . . . . . TGTA . . T . . . T G . A A . . . . . . . GT . . . .
blockSeqs : TTG . . T . . . . . . A T . . . . . . . GT . . . .
blockSeqs : . . . G . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqCons : AC* T**** G************************
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGGNAGCGATATATTNGACGATTNTTNCACTTTTTGGTCCAAATCACATAAATATTAGAAGACGTTTCATA-ATGTGATTGAACAGTTTA-CATCCC-CGATTCAATTTACGGTGAAAACGAGCAGCAC----AGA-CTA-TACCTCTCTTTGGATATCCTC-GTAATAAAAGAAGAAAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCGCAC----CTCAGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-TGACGANACG--T--TTTGT-ACCATCG-TCGTTTGATGAAA-C--AGAAGA--ATA-AACGTCTACAGGATTTTATTAACAACATTATTTACTTAGANACAGATATCCGAAGAAAATTAATAGATGTCGCTA--TT-AAAGAG-CTAGATCTATACCAATNNCAGAACTTCTGGAACTTCAGAAAAT-CGGGAACT-CAGGACGGAATCAGAGAANACGAATCCGCCTCCTGTCG----TAACTCGCAATCCGCGCGATATTAACATG-TATAATTNTGTTAAACAATGCTTTCCGATTTTACAAC-AA--TCCGAAAAACCTAAGGAGCGTCATTGAAAT--GAAGAACATTATCTACAGCCGACNTCAANCNCCNAGCCTAAAAAGAAACTNCTGACCAGAGCCAAATTCTCANCGAATNAGGGNAAAACTACAGTNTCAACAAATGTATGGTGACCCNCGCTGCGGNACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTTCTAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTTAT-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAACG------------------------TAC--AC----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGGNAGCGATATATTNGACGATTNTTNCACTTTTTGGTCCAAATCACATAAATATTAGAAGACGTTTCATA-ATGTGATTGAACAGTTTA-CATCCC-CGATTCAATTTACGGTGAAAACGAGCAGCAC----AGA-CTA-TACCTCTCTTTGGATATCCTC-GTAATAAAAGAAGAAAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCGCAC----CTCAGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-TGACGANACGT----TTTGT-ACCATCG-TCGTTTGATGAAA-C--AGAAGA--ATA-AACGTCTACAGGATTTTATTAACAACATTATTTACTTAGANACAGATATCCGAAGAAAATTAATAGATGTCGCTA--TT-AAAGAG-CTAGATCTATACCAATNNCAGAACTTCTGGAACTTCAGAAAAT-CGGGAACT-CAGGACGGAATCAGAGAANACGAATCCGCCTCCTGTCG----TAACTCGCAATCCGCGCGATATTAACATG-TATAATTNTGTTAAACAATGCTTTCCGATTTTACAAC-AA--TCCGAAAAACCTAAGGAGCGTCATTGAAAT--GAAGAACATTATCTACAGCCGACNTCAANCNCCNAGCCTAAAAAGAAACTNCTGACCAGAGCCAAATTCTCANCGAATNAGGGNAAAACTACAGTNTCAACAAATGTATGGTGACCCNCGCTGCGGNACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTTCTAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTTAT-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAACG------------------------TAC--AC----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAAGGCGAAAGCTCTCTAAATGTGAAATCTTCAGTCAACTTATTTTTTTCTATACTCTACCTAT
Alignments
lowQualScore : 1 1 1 1 1 11 1 1 4444444444444 1 4444444 9999999999999999999 1 4444444 1 111 33333 1 1 3333 11 1 333333333 1 1 222 11 1 33333 1 111 1 1 111 1 1111 2222 11 1 1 11 11 11 333333 11 11 11 11 11 1 11 11111 1 333333333 111 3333333333333333333 6666666666666666666666666 11111111 11 2222222222222222222222 11111 11111
lowQualScore : 1 5 5 1 5 1 1 5 3 44 3 3 7 7 0 4444444444444 7 3 3333333 7 7777777777777777777 3 0 0000000 2 3 8 8 8 8 8 333 8 6 1 8 77 00000 0 0 0 7 3 0000 33 0 888888888 5 5 111 1 88 2 7 00000 7 3 6 22 000 7 3 3 111 6 2 8888 0 6 0 8888 0 7 22 3 0 3 1 0 3 3 88 7 0 88 6 1 1 1 1 88 1 1 2 1 1 000000 1 88 88 88 1 1 2 99 44 5 88 66666 0 0 3 3 6 2 1 0 0 8 1 6 8 222222222 0 6 6 99 3 000 77 888 888 5 66 5 5 8888888888888888888 5 5 5 1111111111111111111111111 44444444 5 3 33 1111111111111111111111 88 99 33333 4 11111 4 2 2 55 1 44 3 7 55 55 3 55 7777 4444 7 3 3 3
lowQualScore : . . . . . . . . . .. . . . . . ............. . . ....... . ................... . . ....... . . . . . . . ... . . . . .. ..... . . . . . .... .. . ......... . . ... . .. . . ..... . . . .. ... . . . ... . . .... . . . .... . . .. . . . . . . . .. . . .. . . . . . .. . . . . . ...... . .. .. .. . . . .. .. . .. ..... . . . . . . . . . . . . . ......... . . . .. . ... .. ... ... . .. . . ................... . . . ......................... ........ . . .. ...................... .. .. ..... . ..... . . . .. . .. . . .. .. . .. .... .... . . . .
lowQualScore : 0 0 5 0 5 0 0 0 3 00 3 3 3 3 7 3333333333333 3 3 3333333 3 7777777777777777777 3 7 7777777 0 2 0 0 0 0 0 666 0 4 4 0 66 88888 0 2 0 0 2 2222 88 0 555555555 0 5 000 0 00 0 3 00000 3 3 7 00 000 3 3 3 000 7 0 7777 7 7 7 3333 7 3 77 2 0 2 0 2 7 3 33 3 7 33 7 0 0 0 0 00 0 0 5 0 0 000000 0 55 00 00 0 0 5 33 00 5 33 00000 2 0 2 2 5 5 4 6 8 0 4 0 0 888888888 8 7 7 22 5 000 11 777 888 0 99 0 0 8888888888888888888 0 0 0 9999999999999999999999999 99999999 7 9 66 3333333333333333333333 00 33 77777 4 11111 4 0 5 00 3 22 6 3 00 00 6 00 7777 1111 3 6 6 6
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGGNAGCGATATATTNGACGATTNTTNCACTTTTTGGTCCAAATCACATAAATATTAGAAGACGTTTCATA-ATGTGATTGAACAGTTTA-CATCCC-CGATTCAATTTACGGTGAAAACGAGCAGCAC----AGA-CTA-TACCTCTCTTTGGATATCCTC-GTAATAAAAGAAGAAAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCGCAC----CTCAGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-TGACGANACG--T--TTTGT-ACCATCG-TCGTTTGATGAAA-C--AGAAGA--ATA-AACGTCTACAGGATTTTATTAACAACATTATTTACTTAGANACAGATATCCGAAGAAAATTAATAGATGTCGCTA--TT-AAAGAG-CTAGATCTATACCAATNNCAGAACTTCTGGAACTTCAGAAAAT-CGGGAACT-CAGGACGGAATCAGAGAANACGAATCCGCCTCCTGTCG----TAACTCGCAATCCGCGCGATATTAACATG-TATAATTNTGTTAAACAATGCTTTCCGATTTTACAAC-AA--TCCGAAAAACCTAAGGAGCGTCATTGAAAT--GAAGAACATTATCTACAGCCGACNTCAANCNCCNAGCCTAAAAAGAAACTNCTGACCAGAGCCAAATTCTCANCGAATNAGGGNAAAACTACAGTNTCAACAAATGTATGGTGACCCNCGCTGCGGNACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTTCTAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTTAT-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAACG------------------------TAC--AC----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
Reference ( family-438 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGCAATACATAAAATCTAACTGGNAGCGATATATTNGACGATTNTTNCACTTTTTGGTCCAAATCACATAAATATTAGAAGACGTTTCATA-ATGTGATTGAACAGTTTA-CATCCC-CGATTCAATTTACGGTGAAAACGAGCAGCAC----AGA-CTA-TACCTCTCTTTGGATATCCTC-GTAATAAAAGAAGAAAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCGCAC----CTCAGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AACATACCGTTAAACA-TGACGANACG--T--TTTGT-ACCATCG-TCGTTTGATGAAA-C--AGAAGA--ATA-AACGTCTACAGGATTTTATTAACAACATTATTTACTTAGANACAGATATCCGAAGAAAATTAATAGATGTCGCTA--TT-AAAGAG-CTAGATCTATACCAATNNCAGAACTTCTGGAACTTCAGAAAAT-CGGGAACT-CAGGACGGAATCAGAGAANACGAATCCGCCTCCTGTCG----TAACTCGCAATCCGCGCGATATTAACATG-TATAATTNTGTTAAACAATGCTTTCCGATTTTACAAC-AA--TCCGAAAAACCTAAGGAGCGTCATTGAAAT--GAAGAACATTATCTACAGCCGACNTCAANCNCCNAGCCTAAAAAGAAACTNCTGACCAGAGCCAAATTCTCANCGAATNAGGGNAAAACTACAGTNTCAACAAATGTATGGTGACCCNCGCTGCGGNACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTTCTAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATCTCA-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAGTTATCATAT-TTAAACCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTTAT-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAACG------------------------TAC--AC----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATT
gi|1 : AGTTGCGCAATACATAAAATCTAACTGGAAGCGATAT-TTAGACGATTGTTTCATTTTTTGGTCCAAATCACATAAATATTAGAAGAC-TTTCATA-ATGTG-TTGAACAGTTTA-CATCCT-CGATTCAATTTACGGTGGAAACAAGCAGCAC----AGAACTA----CTTTTTTTGGATATCCTC-GTAATAAAAGAAGACAGGAA-------AATTACAACGGATTTATACTACAAGA--A----------------AAACGGA-CTCACAC----C--AGTACCTGATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAA-C-GC-AACATACCGTTTAACA-TGGCGAGACG--TGTTTTGT-ACCATCG-TCGTTTGATGAAAAC--AGAAGA--ATA-AACGTCTACAGGA----ATTAACAACATT-TTTACTTAGACACAAATATCCGAC-AAATTTAATATATATCGCTA--T--AGAGAGGCTAGATCTATACCAATCTCAGAACTTC-GGAACTTCAGAAAAT-CGGGAACT-CAGGATGGAATCAGA-AAT-CAAATCCACCTC--GTCG----TAACTCACAATCCGCGTAATATTAATATG-TATAATTCTGTTAAACAATGCTTTCCTATTTTATAAC-AA--TCCGAAAAATCTAAGGAGCATCATTGAAAT--GAAGAACATTATCTACAGTCGACTTCAACCTCCTAATCTAAAAAGAAACTACTGACCAGAGCCAAATTTTCAACCAATAAAGGAAAAACTACAGTTTC--CAAATGTATG--GATCCCCGTTGCAGTAC
gi|1 : cgattagatttcctcagccatatcccagaaacagttgaggttgataccaaaaatggctagttttgatgtcactcttgtataccaacataccacatacagaagcaattgcattctggatcgataaacaccaaagcgaaataatcctagattttccaaagactatcttagagggataaaattagtactagagaacaactattctatgttcggacaacaaacacttattacaaataaaaggaacagccatgggtactaaagtcgccccaacatatgctaccctagtactaggattcctagaggagaaattatttgaaaacacagacagattatttgaaaatcaGTCCACAAGCAACCGACACGGGACCCATCCGTCAGGAATACACCCTGCAGTAAACATTTTGATTTATGTGCTAATGGAAACTTTT-TAATTTTTTCCGTTCTACAAAGTTTTAGAAAACAATGAAACATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTATTT-A-AACCGAAGTTGAATGCT-ATTTAATCATTTACTCTCAATTGTCATAT-TTATATCCATT-GCTT--------TATTT-ATGGCG-CCTTATTG--ACTTTAACTTGCGCCAA---TTT-T-TATGC-T-GCCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT-CT-TAANNNNNNNNNNNNNNNNNNNNNNNNNTTAC--AT----TGT-CATAA--CAAAGAC-----T--GT-G----------TA-TTTGA-AATC-AT-TAC-A-----CT-CTGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTATTctgccttatttaaaaaacaggagatactttcacgtttaaatgtggcaaaaactttcaccattcgaacaaattgtcatgtaaatccatgatttaatatattgcatgattttacctcctgcggagaaaattacataggagaccggaactaagttagctgaccgtgtgagagtccacaagcaaccgacacgggacccatccgtcaggaatacaccctgcagtaaacattttgatttatgtgctaatggaaactttttaattttttccgttctacaaagttttagaaaacaatgaaacatttacggagagcgaaagaagactattttgtaaaattatttaaaccgaagttgaatgctatttaatcatttactctcaattgtcatatttatatccattgctttatttatggcgccttattgactttaacttgcgccaatttttatgctgcctttatgacgtcacaataacgacgtcttaannnnnnnnnnnnnnnnnnnnnnnnnttacattgtcataacaaagactgtgtatttgaaatcattacactctgaagagccgacaaggcgaaagcgctaagtgtgataaatgtagataattatt
gi|10 : cgattagatttcctcagccatatcccagaaacagttgaggttgataccaaaaatggctagttttgatgtcactcttgtataccaacataccacatacagaagcaattgcattctggatcgataaacaccaaagcgaaataatcctagattttccaaagactatcttagagggataaaattagtactagagaacaactattctatgttcggacaacaaacacttattacaaataaaaggaacagccatgggtactaaagtcgccccaacatatgctaccctagtactaggattcctagaggagaaattatttgaaaacacagacagattatttgaaaatcaagttgcgcaatacataaaatctaactggaagcgatatttagacgattgtttcattttttggtccaaatcacataaatattagaagactttcataatgtgttgaacagtttacatcctcgattcaatttacggtggaaacaagcagcacagaactactttttttggatatcctcgtaataaaagaagacaggaaaattacaacggatttatactacaagaaaaacggactcacaccagtacctgatattcaattcttgtcatccctcacatgttaacgcaacataccgtttaacatggcgagacgtgttttgtaccatcgtcgtttgatgaaaacagaagaataaacgtctacaggaattaacaacatttttacttagacacaaatatccgacaaatttaatatatatcgctatagagaggctagatctataccaatctcagaacttcggaacttcagaaaatcgggaactcaggatggaatcagaaatcaaatccacctcgtcgtaactcacaatccgcgtaatattaatatgtataattctgttaaacaatgctttcctattttataacaatccgaaaaatctaaggagcatcattgaaatgaagaacattatctacagtcgacttcaacctcctaatctaaaaagaaactactgaccagagccaaattttcaaccaataaaggaaaaactacagtttccaaatgtatggatccccgttgcagtacctgccttatttaaaaaacaggagatactttcacgtttaaatgtggcaaaaactttcaccattcgaacaaattgtcatgtaaatccatgatttaatatattgcatgattttacctcctgcggagaaaattacataggagaccggaactaagttagctgaccgtgtgaga---TTTAT-TATGC---GCCTT-A---TCGACCTCATCC-ACT-A-------------------ACG-ACCT-CT-TAACG------------------------TAC--AC----T-T-CATAAA-CAAAGACC----T--GTCG----------TACTTTGT-AATCCAT-TAC-A-----CT-CATAAGA--CCCGACAAT-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-TAAAA-T-GTAAA
gi|11 : caagacAGTTATCATAT-CTAAACCTTTTAGCTTATCGATCTTATTTTATGGCG-CCTTATTG--ACTTTAACGTGCGCCAT---TTTAT-TATGCTT-ACCTTTA---T-GACGTCA--C-AAT-A-------------------ACG-ACGT--T-TAAC-------------------------TAC--GA----TGT-CG------GAAGAT-----T--AA-G----------T--TTTAACAATG-AT-Tattttcatcatctgaat
gi|12 : TAAAATCAGCAGAA-ATTATCAACAACCGACGTCAAGCGCCAAGCCTAAAAA--AACTCCTAACTAGAGCCAAATTCTCACTGAATCAGGGTAAA--T---GTGTCAACAAA--TATGGTGACCCACGCTGCGGGACcat
gi|13 : AAAGAC-----T--GT-G----------TA-TTTG----TT-AC-TAC-ATACAGCT-C-GAA-A--GCCGACAAG-GCG-AA-AGGGC--G-C--T----AA-GT-GTGA-T-AAA-TGGCAGATAATTATT
gi|14 : atcttacattctgaagtGTCCACAAGCAACAAATACGGGACCCATTCGTCAGGAATACACCCTGCAGTAAATATTTTGATTTATGTGCTAATGCAAACTTTTTTAATTTTTT-CGTTCTACAAAGTTTTAGAAAActgtcaacgttggattttat
gi|15 : AAGA--GCCG-CAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATT
gi|16 : aA--GCCGACAAGTGCG-AACA--GC--GGC--T----AAAGT-GTGA-T-AAA-T-GTAGATAAATATTcctcagttcatcgttggattttattctttccctctacgttttacctataccatggacttttactacaaat
gi|17 : -AGTTCA-TGTCA-TCCTTC-ACGTAC-AAAAC-GT-AATACGCCATCAAATA-TAACAATACC--T--TTTcagtcatgcgttggattcttatcttttctctacgtaattacctatcacatggacagtt
gi|18 : tatATATGTACATG-TATAATTCTGTTAAACAATGCTtaatca
gi|18 : aAGCATCATTGAAAT--GAAGAACATTATCTACAagcatcattgaaatgaagaacattatctaca
gi|2 : aatatgtacatgtataattctgttaaacaatgctTTTCAAA-ATGT-ATTGAACAGTTTA-CATCCCTCAATTAAATTTACAGTGAAAACAAACAAAAC----AGA-A-A-TACCTCACATAGAA-ATCCTT-GTGCTAAAAGATTAAAGGAA-------A-TTACAATTTATTTGTACAGCAAAA--ACAAAAAACAAAACAAAAAACGAA-TTCGTA------TCAGTACCTAATATTC-AATTCT-TGTCA-TCCCTC-ACATGT-TAAAC-GC-AATATACCGTTAAACA-TGACGATACGT-T--TTTGC-ATCATCG-TCG-TTGATGAAA----AAAATA--ATA-GATGTC
gi|2 : gatGAAAAAAAT-AATAGATGTCACTA--TTGAAAAAG-CTAGATCTATACCAATGGCATAACT-CTGGAACTCCAGAAAAT-CAAGGATT-CAGTATGAAATCAGAAAAAA---ATCCGCCTCCTGTTG----TAACTCACAATCCCCGTGATATTAACATG-TATAATTATATTAAACATTACTTTCCAACTTTACAGC-AA--TCCG-AGAACCTAAGGAGCGTCATactattgaaaaagctagatctataccaatggcataactctggaactccagaaaatcaaggattcagtatgaaatcagaaaaaaatccgcctcctgttgtaactcacaatccccgtgatattaacatgtataattatattaaacattactttccaactttacagcaatccgagaacctaaggagcgtcat
gi|20 : gattttcaaaatgtattgaacagtttacatccctcaattaaatttacagtgaaaacaaacaaaacagaaatacctcacatagaaatccttgtgctaaaagattaaaggaaattacaatttatttgtacagcaaaaacaaaaaacaaaacaaaaaacgaattcgtatcagtacctaatattcaattcttgtcatccctcacatgttaaacgcaatataccgttaaacatgacgatacgtttttgcatcatcgtcgttgatAGTTGCGCAATACATAAAATCTAACTGATAG-GATATATTTGATG-TTTTTACACTT
gi|21 : -TAC-A-----CT-CTGAAGA--GCCGGCAA--GCA-AA-A--GC--G-CTAT----AA-GA-GTGA-A-GAA-T-G-AGAccttta
gi|22 : -GCCTTTA---T-GACGTCA--C-AAT-A-------------------GCG-ACGT-CT-TTAC
gi|3 : AATACACCCTGCAGTGAACATTTTGATTTATATGCTAATGGAAACATT-CTAATTTTT-CCGTTCTATAAAGGTTTAGAAAACAATGAA-CATTTACGGAGAGCGAAAGAAGA--CTATTTTGTAAAATTAT-TCA-AACCCAAGTTGAATGTT-ATTTAATCATTTGCATCCAGTGATCATAA-TTGAACCCATT-ACCT--------CATTT-ATGGAA-CCTTTTTG--ACTTTACGTTGCGCCAA---TCTAT-TTTGC-T-GCTTTTA---T-GACGTCA--C-AAT-A-------------------GCG-ATGT-CT-TAACA-------------------------AC--AA----TGG-CATAA--CAAATAC-----TACGT-G----------TA-TTTGA-AGTT-GT-TAC-A-----TT-CTGAATA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGA-T-AAA-T-GTAGATAATTTTTcaaa
gi|4 : ATAT-C-AATTCT-C-TCA-ACCCTC-CCATGGATAA---TC-AA-ATAC-GTGTAACC-CGATGGAACGGGT--GTTGT-AGCACCGATCACTTTCTGAAA-TCAAGAAGAGAATACAACGTCTA----ATTTTATTAA-AACATTATTTA---AGAGA--GATATCTAAAGAAAATTAATAGATGATGTTAATTT-AAAG-G-CTA-ACCTATTCCAATTACAGAGCTTTTGAAACTTT----AATACGGGATCCACAAGAC--AAT-AGAGAACACGAATGGATACCCTATTGAACCTAATTAGC-ATGCGCGC-ATA-TAATATACTAT-ATTATGTTAAAAGATTCCTTCAGATTTTACAACTAAGTTCCGAAAAcagcaatcgttggatttt
gi|5 : ttAAGACGTTTCATAGATGTGATTGAACAGTTTAACATCCC-TGAT-CAATGTACGGTGAAA-CGAGCAGCATCATTAGATCTACTACTTCTCTTTGGATATCCTCCGTAATAAAAGAAGAACGGAACAGATCGAATTACAACGGATTTATACTACAAGACGA----------------AGACGGAGCTCACACCGCACTCAGTACCT-ATATTCGAATTCTATGTCATTCCCTCGACATGT-TAAACGGCAAACATA-CGTTAAACATTGGCG--ACG-----TTTGTGACCATCG-TCGTTTGATG-AA-C--AGAAGA--ATA-AACGT
gi|6 : AAAGAGGAAACTATGTTGTAAAATTATCTTATAACAGAAGTTGAATGCTTATTTA-TCATTTACTCT-----A--ATAT-TTTTACTC-TT-GCTT---------ATTT-ATGGCGCCCTTATTG--A-TTTAACTTGCGCCAA---TTTAT-TATGC-T-GGCTTTA---T-GACGTCA--C-AAT-A-------------------ACGAACGT-CT-TAA--------------------------TACCAAC----TGTCCAACA--CAAAGAC-----T--GT-G----------TA-TTTGT-AATC-ATCTAC-A-----CT-CGGAAGA--GCCGACAAG-GCG-AA-A--GC--G-C--T----AA-GT-GTGAGT-AAACT-GTAGATAATTATT
gi|7 : A-AACCAAATTTGAATGCT-ATTTAATCA-TTACT-TCAATTGTCATATGTGAAACCCATT-GCTA--------TA-TT-ATAGCG-CCTTATTG--AC--TAACTTGCGCCAA---CTTATAGATGC-TGGCCTTTA---T-GACGTCA--CAAATGA-------------------ACG-ACTT-TTGTAACG------------------------TAC--AC----AGT-CATAAACTAAAGAC-----T--GT-A----------T--TTTAA-AATC-A---ACAA-----TT-CTGAAGAAGGCCGACGAA-GTGTAA-A--GCTTT-C--T----AA----GTGG-T-TAA-T-GTAGATAATTAcagtcttcgttggaattt
gi|8 : a-ATGGTG-CCTCCTTGTGACATTCGTTTGCGCTAAAAGTTTAT----GC-T-AACTTTACTAT-GACGTCA--C-AAT-ATTTATTGTTCTAAAAGTTTACG-TTGTCCT-TAATA------------------------TAC--ATGTAATGT-CACAA--TAGCGACTTTAAT--AT-GTTATTGTTGTTG-TTTGA-AATT--------------CTGCTGAAGA--GCCG-TAAT-ACG-AA-A--GC--G-C--TTTAGAA------AA-T-AAA-T-GTgtcagtcatcgttgga
gi|9 : AAATAC-----T---T-G----------TA-TAT----AT---T-TAC-A-----CT-CTGAA-A--GC-GACAAG-GCG-AACA--AC--G-C--A----AA-GTGGCGATT-AAA-T-GTAGATTATTgaaatctttaactgactaatctttttctatactcttcctatgcctaggacttatttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAAGGCGAAAGCTCTCTAAATGTGAAATCTTCAGTCAACTTATTTTTTTCTATACTCTACCTAT