lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111 1111111111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 111 2222222222 22222 111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 33333333 2 333 1 1 4 666666 555 55555555555 1 1 1 1 0000000000000000000 1 777 4 4 1 11 1 555555 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1 33 222 1 333 3333 1 222222 1 1 22222 2 1 2 2 22 1 2 2 2 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111 22 2222 222 6666 11 6666666666 22 22 1 4 444 1 1 4 22 1 22 4 11 22 4 1 1 1 222 7777 11 1 5555 1 1 2 1 1 333 222 22 1
lowQualScore : 3 0 5 55 6 111 5555555555 6 6 888 0 22222 6 222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55555555 0 555 2 5 7 0 6 777777 6 222 88888888888 5 7 6 7 5 7777777777777777777 4 2 5 000 0 0 5 22 6 5 6 999999 6 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 66 1 0 2 4 00 4 6 666 4 2 6 3 3 3 111 5555 6 3 7 444444 6 4 2 5 2 3 33333 0 5 0 0 77 888 7 0 6 0 0 5 3 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 8888 4 3 2 11 5555 555 6 6 2222 22 6 2222222222 6 33 33 6 5 0 000 5 6 7 0 6 33 5 33 6 0 22 11 0 6 6 5 6 6 6 6 7 5 6 111 7777 22 5 2222 5 5 6 6 6 3 6 7 6 55 2 6 5 88 6 333 6 999 6 99 5
lowQualScore : . . . .. . ... .......... . . ... . ..... . ... .............................................................................................................................................................................................................................................................. ........ . ... . . . . . ...... . ... ........... . . . . . ................... . . . ... . . . .. . . . ...... . ................................................................................................................................ .. . . . . .. . . ... . . . . . . ... .... . . . ...... . . . . . . ..... . . . . .. ... . . . . . . . ........................................................................................................................................... . .... . . . .. .... ... . . .... .. . .......... . .. .. . . . ... . . . . . .. . .. . . .. .. . . . . . . . . . . . ... .... .. . .... . . . . . . . . . .. . . . .. . ... . ... . .. .
lowQualScore : 2 8 0 88 7 333 8888888888 7 7 777 3 88888 7 333 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 00000000 0 000 5 0 0 0 0 000000 0 000 00000000000 0 0 0 0 0 0000000000000000000 0 5 0 000 0 0 0 00 0 0 0 000000 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 55 5 5 5 0 55 0 0 555 0 5 0 0 3 7 000 3333 7 3 3 555555 0 0 5 5 5 0 00000 0 0 0 0 55 000 0 0 0 0 0 5 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 5555 0 0 5 00 0000 555 0 0 0000 00 0 0000000000 0 00 00 0 0 0 000 0 0 0 0 0 00 0 00 0 0 00 00 0 0 0 0 0 0 0 0 0 0 0 000 0000 00 0 0000 0 0 0 0 0 0 0 0 0 55 5 0 0 55 0 555 0 555 0 00 0
consensus : GAAATAATTATCTACATT--TA-T-C-ACAN-TTA-G---C-GCT-TT-C-GCCTT--GT-C-GGC--TCTTCA-A------GAG--------TGTAACGNTTT-CA----A-A-TA----CA---AGTCT-TTGNTA----TGACGA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGN---CAGCGTAT--A--A-TAAT-TG-GCG-CAAG-TTAAA-GTTCAT--A-AGGCGCCACAA--A-TAAN--GCA-NCGG--NTA-T---A-AATATTGACAACTTGNTCNGATGTCNGTGAAGTGACGTTNACATAGCATCTCAGGTACTTNGGTTTAAATTATATTTACAAGAT--TCTCTCTTTCGTTCTATTGTAAATGATATAAATTGTATTTTTTCTAATACTTTGTAAATACGGCAATAATCGTAGTTAGGTTACATCCANTGGCANATACATCAAAATATGTTTTACTGCAGGGTGTTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGACAGGTCATACAATATAGTAGATTTTGTAGATTTGCAC---------TTC-ATTGGTGAA--TTT----ACA-TTAAATTT-----CAT-TCCGTTTTTTGTAT-----TAGTTAACCGCATCGTGGATTCTCGCATCTGGAAACTGCATGTATTTTCTTCTTAATCGNNTGNGAATTTGGCTCTNGTNAGNANTTNTCTTCAGGTTTNNGNGNTTAANGTCGACTGTAGAT-AACGTTCTTNA--NTTCGATGA-CGTTCCTTAGAT-TTTCGGATTGTGTGNACAATCGGAAAGCANTNTTTAACANAATNATTGCATATTACATATTACGGGGATTGTGAGTTACGAACGGAAGGNNNATTTGTTTTTCTGATTTCATCCTGGGTTCCCGATTTTTCTGGAGTTCCGAAGTTCTGNGATTGGTATACGANTNTATGCCTTTTCTATAGCGATATNTATTAAATTTTCCGGATATCTTCTGTCTAAGTAAAGAGGAAACTATGTTGCTAATTTTTATATGACGTTTTTCCCCTCCTGTTTTNAATATACTCANNCGTTCCACNATANNGCANACNCGTCTNGCCTNGTTGAACGGTATGCTGCGTCTAGCATGTGCNNGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTACCG-TCCCTTGCAAAATATGTCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTCATGTGGAATGGACCAAAACATAAAACAATCGTCTAAAAAT-CGCTTCCAATTAGACATTATGTATTGCGCAAATTATTTTCCATAATAACTTGTCTGTGTTTCGAAATAATTTCTCTTTTCGAAATCCCAATATTTGGTTAGCATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTGTAAGACGTGTTATA-TGTTAAACATACAATAGTTA-TATCGAGTACTAATTGTAATCTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCATANNANGAATGTTCANCCACTAGGGTCCGTTCTTNNTTTCTTTGGGCTTGTTAATCTTT
Reference ( gi|1 ) : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-C-GCCTT--GT-C-GGC--TCTTCAAA------GAG--------TGTAATGATTT-CA----A-A-TA----CAC--AGTCT-TTGTTA----TGACAA-TGTAA--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGCATA---A--A--AAT-TG-GCG-CAAG-TTAAA-GTCAAT--A-AGGCGCCATAA--A-TAAA--GCA-ATGG--ATA-T---A-AATA-TGACAA-TTGA--GGA-GT-----AAATGA--TTAAAATAGCAT-TCA---ACTTCGTTTTAAATAAT-TTTACAAAATAGTCT-TCTTTCGCTCT-CCGTAAATG-------TT-CATTGTTTCTAAAACTTTGTAGAAACGGAAA-AATTAAA---AAGTT---TCCATTAGCACATAAATCAAA---TGTTT-ACTGCAGGGTG-TATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGTACAAATCATGCAATATATTAAATCATG--GATTTACATGACATATTGTTCGAATGGTGAAAGTTTTGCCACATTTAAACGTGAAAGTATCTCCTGTTTTTAAATAAGGGCAGGT-ACTGCAACGGGGATCCATACATTTGGAAACTGTA-GT-TTTTCCTTTTA-TTGGTTGAAAATTTGGCTCTGGTCAGTAG-TTTCTTTAGATT-AGGAGGTTGAAGTCGACTGTAGAT-AATGTTCTTCA--TTTCAATGA-TGCTCCTTAGAT-TTTCGGATTGT-TATA-AATAGGAAAGCATTGTTTAACAGAATTAT-ACATATTA-ATATTACCGG-ATTGTGAGTTACGA-CG--AGGTGGATTTGATTT-CTGATTCCATCCTGAGTTCCCGA-TTT-CTGAAGTTCCGAAGTTCTGAGATTGGTATA-GAATCTA-GCCTTCTCTATAGCGATATATATTAAATTTGTCGGATAT-TTGTGTCTAAGTAAAAA-------ATGTTGTTAATTCCTGTA-GACGTTTATTCTCTTCTGTTTTCA------TCAAACG----ACGATGGTACAAACACGTCTCGCCATGTTAAACGGTATGTTGCGTTT-ACATGTG-AGGGATGACAAGAATTGAATAT-CAGGTACTGGTGTGAGTCCGTTTTCTTGTAGTATAAATCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATATT-ATGTGATTTGGACCAAAAAATGAAACAATCGTCTAAATATGCGCTTCCAGTTAGATTTTATGTATTGCGCAACTTGATTTTCA-AATAATCTGTCTGTGTTTTCAAATAATTT-TCCTCTAGGAATCCTAGTACTAGGGTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAATAAGTGTT-TGTTGTCGAACATAGAATAGTTGTTCTCTAGTACTAATTTTAATCCCTCTAAGATGTCTTTGGAAAATCTAGGATTAATTTCGCTTTGGTGTTTATCGATCCAGAATGCAATTGCTTCTGTATGTGGTATGTTGTATACAGAGAGTGACATCAAAAAGCCATTTTTGGTATCAACCTCAACTTGTTCTGGGGATATGGCTGAGGAAATTCTAAAATCGTTAAGAAGTATGTCTAATAAATTGCTGAGTATGTGGGTGGAACAAGCAGGTCCGGCTACAATTGGTCTTAGCTTTAAATCTGATGGTTGTGGTAATTTGGCGTAACACGAGTTTTCACTTATTA--ATCTGTTCTGGATCTCTTTGGATTTGTGAATCTTT
gi|2 : GAAATA-TTATCTA-ATTC-TA-T-C-ACACATTA-AAGAC-GCT-TTTC-GCCTCTAGTAC-GAC---CGTCATATTACCCGAGATATCATACGTAATGATATACA----A-AATAGCAACA---AGTCT-TTAGTAGTACTGACGAGTGTAG--T-AA--GACGTCAAGTATTTT--TGCTGAC-GCTCTTTTAT--A--AAGG---CAGCATATTTA--AATAATATGTGCG-CAAGTTTAAA-GCTCAT--ACCGGCGCC-CAATTA-TAAA----A-ACGGTAGTA-TCTAA-AATATTGACA---TGATCTGA-GTCTGTGAAATGACGTTTACATAGCAT-TCAGGTACTTCG
gi|11 : tGATATTATTATCTACATT--TA-T-C-ACAG-ATC-G---C-GCT-TT-T-GCATT--GT-C-GGC--TCTTC--A------GGG--------TGTAACATTTT-CA----A-A-gaggtattcccattattaacacattatatttctctcttaaacaaatcgagtatccttttcgctctccagcagtatacatgattcttattcgctctttctctacaacttaaggaattttttggtatccaggataaaatcataactattataagttttctctgacatactttttaatgacaaatacatcaaaatatgttttactgcagggtgttattt
gi|3 : gagacggggtnnnnnnnnnnnnnnnnnnnnnnnnnagagagagagagagagagagagaggacgggactctaaagatggctgAATAATTATTTACATTGTTAGTGC-ACAC-TTA-G---CAGCTGTT-T-GCAAT--GT-TAGGCCGTCTTCAGA-------AG--------T-TAATGTTTT-CATCCGACA-TA----CAA--AGTCT-TTGATT----TG-CAG-TGTAGGTTTAA--GACATCG----TTATATTG-TGACAG-----TCATGTA--AAGCTCTCAGCGTAT--ACTA--AAT-TG-GCGTCAAG-TTAAA-GTCCAT--A-AGCTCCCACAA--GCTAAGTGGTA-TTTG--TTAGT---ACAAT--TGACAACTTGT--GGATGTTA---AAGTGA--TTAA--TAGCATCTCA---ACTTGGGTTTAAATTATATTTACAAGAT--TCTCTCTTTCGTTCTATTGTAAATGATATAAATTGTATTTTTTCTAATACTTTGTAAATACGGCAATAATCGTAGTTAGGTTACATCCATTAGCACATA
gi|23 : gagatcgagattgactactctggcgatgatagtaggggaaagactgagagagagacggagagaggacggaataaatccatacgatagatttgactcgATTATC---ATT--TA-T-T-CCAG---A-G---C-GCT-TT-C-GCCCT--A--C-GGC--TCTTta
gi|13 : gaagatttcacTAGCTACATT--TC-T-TTACAC-TTAAG---C-GCT-T--C-GCCTT--GA-C-GGC--GCTTCA--------TAG--------TGTAACAATTT-CA----A-A-TG----CACTGAGTATATTGTTA----TGAC-A-TGTAG--TTAA--GAtgacatgggatttctaataacaacaaat
gi|6 : ATT--TA-T-T-CCAG---A-G---C-GCT-TT-CCGCCCT--A--C-GGC--TCTTCA----------G--------TGGAAT---TT-CA----A-A------------A----------A----TAACAA-TATCA--TAAATTGACGTCG----CTAT--TA-TGAC-G-----TCAT--AGTAAGA---CAACGTT---A--ATTTTT-TG-GCG-CAA---TAAATGTTAATGAA-ATGCACCA-AA--A-TAAT--GCCTGTGG--CTC-T---A-AATtt
gi|2 : atatataataattgagttgaagatttcacattTT---TTTAATGACAAATACATCAAAATATGTTTTACTGCAGGGTGTTATTtataattttcaaacattttttttaaggaagaaattaaaaat
gi|7 : tgaaatattatctaattctatcacacattaaagacgcttttcgcctctagtacgaccgtcatattacccgagatatcatacgtaatgatatacaaaatagcaacaagtctttagtagtactgacgagtgtagtaagacgtcaagtatttttgctgacgctcttttataaaggcagcatatttaaataatatgtgcgcaagtttaaagctcataccggcgcccaattataaaaacggtagtatctaaaatattgacatgatctgagtctgtgaaatgacgtttacatagcattcaggtacttcggaggtattcccattattaacacattatatttctctcttaaacaaatcgagtatccttttcgctctccagcagtatacatgattcttattcgctctttctctacaacttaaggaattttttggtatccaggataaaatcataactattataagttttctctgacatacAGGACAGGTCATACAATATAGTAGATTTTGTAGATTTGCAC---------TTC-ATTGGTGAA--TTT----ACA-TTAAATTT-----CAT-TCCGTTTTTTGTAT-----TAGTTAACCGCATCGTGGATTCTCGCATCTGAAAAC----------TTC-------TTGTTTGTGAATTTAGTTTTAGTGAGAAATTTTCTTCAAATT-TTGTGGTTAAAGTCTACTGTGGAG-TATATTCGTGG--ACTGGATGA-GATTCTTTA-ATGTTTCTGACTGt
gi|4 : tTGGAAACTGCATGTATTTTTTTCTTAATCAGATGGAAATTTGGCTCTTGTCAGTAT-TATTTTCAGGTTTAGGAGCTTAACGTCGACTGTAGAT-AACGGTCTTTA--GTTCAATGA-CATCTCTTAGAT-GTTGGGATTGT-TGTACAATTGAAAAACAATTTTTAACATAATGAT-GTATATTA-ATATTACGGGGATTGTGAGTTACGA-CG--AGGTTGATTTATTTT-CTGATTTCATCCTGGGTTCCCAATTTT-CTGGAGTTCTGAAGTTCTGCGATT---------ATGTA-GC---------------ATATATT---TTTTCCGGATAT-TTCTGT------------------ATGT--CTAATT--------AC----------TCCTGTTTTAA------TC-ATCG----ACGATACTGCAAACACGTCTCGCCTTGTTAAACGGTATGCTGCGTTTAACATGTG-AGGG
gi|5 : GTCGACTGTAAATTAATGTTCTTCAATCTTCAATGAATG-TCCTTAGAT-TTTCGGAT-GTGTAAA-AATCGGAAAGCATTGTT-AACAGAATTATTACA-ATTACATATTACGGG-ATTGTGAGTTACGAACGGAAGGGGCATTTGTTTTTCTGATTTCATCCTGAGTTTCCGA-TTTTCTGA-GTTCCGAAGTTCTGAGATTGGTATACGACTCTATGCCTTTTCTATAGCGATATCT-TTAAATTT-TC-GATATCTTCTGTCTAAGTAAAGAGGAAACTATGTTGTg
gi|9 : acTTTTTATATGATGTTTTTCCCCTTCT----TCAATATACTCACACGTTCCACTATAGAGCATATCCGTCTGGCTTAGTTGAATGGTATGTTACG-CT-GTATGTGCCCGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTACCG-TCCCTTGCAAAATATGTCTGTaa
gi|8 : AATCTTCATGTGGAATGGACCAAAACATAAAACAATCGTCTAAAAAT-CGCTTCCAATTAGACATTATGTATTGCGCAAATTATTTTCCATAATAACTTGTCTGTGTTTCGAAATAATTTCTCTTTTCGAAATCCCAATATTTGGTTAGCATATATacttgtttcat
gi|8 : TATTTGTAAGACGTGTTATA-TGTTAAACATACAATAGTTA-TATCGAGTACTAATTGTAATCTCTCTttgtaagacgtgttatatgttaaacatacaatagttatatcgagtactaattgtaatctctcttat
gi|14 : aatcttcatgtggaatggaccaaaacataaaacaatcgtctaaaaatcgcttccaattagacattatgtattgcgcaaattattttccataataacttgtctgtgtttcgaaataatttctcttttcgaaatcccaatatttggttagcataAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCATACAACGAATGTTCACCTACTA--GTCCGTTCTTTATTTCTTTGGGCTTGTTAATCTTTtat
gi|15 : AATTAGCCTTAG-TTTAAATCTGATGGTTGTAGTAATATGGCATAACAAGAATGTTCAACCACTAGGGTCCGTTCTTATTTTCTTTGG-CTTGTTAATCTTT
13 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CATTTAATCCAGATAGCGTTCCCCTACGGCGATGCAGTGCATTTGCGAATAATAGCAATCTCATAAATAGACGTATATATTATGGCGTCATAGTAAGTCAAAGTTAATTTTATTTAGCAATGTATGGCAATGAAATGCACCAAAATAATAAAACAT
Unaligned ( gi|12 ): TAATTGAAGTTGAACGTATATATCCCATCATTTCATTCCAGCAGCGCTTTTCGGCCCTACGGCTCTCTTTCAGTCGTGAATTTCACAATCAATAACAATATTACTATCACTACTATACTATATTAATATAATAATCGTTACTT
Unaligned ( gi|16 ): TTGAGTAGAAGATTTCGCATCATTTTATTCCAGAGCACTTTCGCCCTACGGTTTTTACTGGAATTTCAAATAACAATATCATAAATCGACCTCAC
Unaligned ( gi|17 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|18 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|19 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|20 ): ATATATATATATAAGAACAGGTATTTAAAGTAGGGTATTTCACATTTAATTTCTTCCGAAGCGCTATCGCGCTACACGGCTCATCAGTGGA
Unaligned ( gi|21 ): TATATAAATACATATATAGAAAAATTGAGTTGAAGATTTCACATTATTTATTCCAGAGCGCTTTCGCCCTAGCGCTCTGGAATAAAATAA
Unaligned ( gi|22 ): AGTATGTGTTGATGGCAAGATTTAAAAGCCAAATACTGATGTGTTATCCGTCTTCCTTGCAAAATATGTAATTGAACTTTT
Unaligned ( gi|24 ): ACCATATTGAAATAACGTTGCAATTTAATGATGTCATAGTAGCAGACGTCCGTCGATTTTTGGCGCAATAGATTT
Unaligned ( gi|25 ): ATATATATATATATTCAAATGAAAAAAACTGAGTTGAAGATTTCACATTATCTATTCCAGAGCGCTT
Unaligned ( gi|26 ): TATGTCTATAGTTATATGTAGAAAATATTGAGTTGAAGATTTCACATTATTTATT
Unaligned ( gi|27 ): AAAAAATTGAGTTGAAGATTTTCACATTATTTTATTCCAGAGCGCT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 11111 111 11111 11 111 333333333333333 1111 3333333333333 1111 111 11 11 2222 11 1 1 22222 11111 1111 111111111111 1 1 1 1 11 1 1111 333333333333333333333 6666666666666666 1 33 1 2 333 1 22 1 1 3333333 1 1 222 222 222 1 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 888888888 2 444444444 2 55555 2 55555 1 33333333 2222222 1 1 222 1 11 111 1 333333 2 2 2 33 2 4 2222222222222 2 3333333 2 1 66666666666666666 222 1 1 1 11 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 2 1 1 333333333333333333333333333333333 2222 2 33
lowQualScore : 0 2 33 1 5 99999 000 5 5 666 66666 5 55 000 333333333333333 1 888 5 2222 5 0000000000000 6 8 3 7777 0 111 11 6 11 1111 33 0 0 55555 88888 8888 666 999999999999 0 0 2 0 0 2 33 0 0 99 8888 555555555555555555555 3 7 2222222222222222 0 2 00 1 5 3 777 1 4 5 77 5 5 3333333 5 3 4 4 2 5 4 111 111 1 0 1 3 111 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 2 4 88 000000000 0 4 333333333 0 3 00000 0 55 4 00000 3 5 4 3 4 66666666 7777777 22 11 1 1 1 4 4 0 222 1 1 1 0 2 1 1 33 2 111 2 0 3 000000 3 1 1 7 1 1 3 0 7 3 6 6 3 00 333 3 0 0 6 1 2222222222222 7 77777 6 1 7 7 6 3 2222222 3 5 4 0 6 1 66666666666666666 1 22 1 1 1 1 0 0 88 99 444 3 6 3 3 88 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 5 88 2 4 0 4 3 4 5 2 5 2 4 3 333333333333333333333333333333333 2 2 5555 2 0 3 2 2 7 22 1 1 0 00 22 6
lowQualScore : . . .. . . ..... ... . . ... ..... . .. ... ............... . ... . .... . ............. . . . .... . ... .. . .. .... .. . . ..... ..... .... ... ............ . . . . . . .. . . .. .... ..................... . . ................ . . .. . . . ... . . . .. . . ....... . . . . . . . ... ... . . . . ... . . .......................................................................................... . . . .. ......... . . ......... . . ..... . .. . ..... . . . . . ........ ....... .. .. . . . . . . ... . . . . . . . .. . ... . . . ...... . . . . . . . . . . . . . .. ... . . . . . ............. . ..... . . . . . . ....... . . . . . . ................. . .. . . . . . . .. .. ... . . . . .. .......................................................................................................................... . . .. . . . . . . . . . . . . ................................. . . .... . . . . . . .. . . . .. .. .
lowQualScore : 8 5 66 4 7 00000 000 7 7 000 99999 7 77 000 444444444444444 4 777 7 1111 7 7777777777777 7 0 8 0000 8 666 00 0 00 2222 88 0 0 00000 55555 5555 888 000000000000 0 0 5 0 0 5 88 0 2 88 5555 000000000000000000000 2 3 0000000000000000 7 0 00 0 0 3 000 0 0 5 55 0 5 5555555 0 0 0 0 5 5 0 000 000 0 7 0 7 555 5 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 5 0 55 000000000 0 0 000000000 0 0 00000 0 55 0 00000 0 5 0 0 0 33333333 0000000 00 77 0 0 0 0 0 7 333 0 0 0 0 0 0 0 88 0 555 5 0 2 333333 7 0 0 3 0 0 7 7 3 3 7 7 7 33 000 7 7 0 7 0 7777777777777 3 00000 7 0 3 3 7 3 0000000 0 5 0 7 7 0 00000000000000000 0 00 0 0 0 0 7 7 00 88 555 3 7 3 3 33 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 00 5 0 0 0 0 0 5 5 0 5 0 0 000000000000000000000000000000000 5 5 0000 5 0 0 5 5 3 00 0 0 7 00 00 7
consensus : GAAATAATTATCTACATT--TA-T-CACAC-TT-AG---C-GCT-TT-C-GCCTT--GT-C-GGC--TC---TT---CGA-GA------GTGTAACGATTT-CA----A-A-T-A----CA---A-GTCT-TTGNTA----TGACAA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGCGTAT---AA-TAA-T-TG-GCG-CAAGTT-AAA-GTCNAT--AA-GGCGCCACAA--A-TAAA--GCA-ATGGT--TA-T---AAATATTGACAA-TTGA--GGA-GT--GTAAAGTGA--TTTA-ATAGCAT-TCA---ACTTCGGTTTAAATNATATTTACAAGATAGTCTCTCTTTCGCTCTACCGTAAATGATATAAATTGCATTNTTTCTAANACTTTGTAGANACGGNAATAATCGNAGTTAGGTTACATCCATTAGCACATANATCAAAATATGTTTTACTGCAGGGTGTTATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGNACAGGTCATGCAATATANTAGATCNTGTAGATTTGCACGACATATTGTTCGANTGGTGAAAGTTTTGCCACATTTAAACGTGAAAGCATCTCCNNTTTTTGNATAAGGGCAGNTAACCGCANCGNGGATCCNCGCATCTGGAAACTGCA-GT-TTTTCTTCTTA-TCGGTTGNAAATTTGGCTCTNGTCAGTAGTT-TCTTCAGATTTAGGAGGTTAANGTCGACTGTAGAT-AATGTTCTTCAAT--TCAATGANATTCCTTAGAT-TTTCGGATTGT-TATA-AATCGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTACGGGGATTGTGAGTTACG-ACG--AGGTGGATTTG-TTTTCTGATTTCATCCTGAGTTCCCGA-TTTTCTGGAGTTCCGAAGTTCTGAGATTGGTATA-GA-TCTATGCCTTCTCTATAGCGATATATATTAAATTTTCCGGATAT-TTCTGTCTAAGTAAAGAGGAAACTATGTTGTTAATTCCTGTATGACGTTTNTCCCCTTCTGTTTTCA------TCA-ACG-TC-ACGATAGTGCAAACACGTCTCGCCTTGTTAAACGGTATGTTGCGTTTAGCATGTGNNGGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATNTTCATGTGGNNTGGACCAAAANATGAAACAATCGTCTAAANATGCGCTTCCAGTTAGACNTTATGTATTGCGCAANTTGNTTTCCATAATAACCTGTCTGTGTTTCGAAATAATTTCTCCTCTNGGAATCCCAGTACTNGGNTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAANANGTGTTATGTTGTCGAACATANAATAGTTGTTNTCNAGTACTAATTNTAATCCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCGTAACACGAATGTTCACCTACTA--GTCCGTTCTTNATTTCTTTGGGCTTGTTAATCTTT
Reference ( family-437 ) : GAAATAATTATCTACATT--TA-T-CACAN-TT-AG---C-GCT-TT-C-GCCTT--GT-C-GGC--TC---TT---CAA-GA------GTGTAACGNTTT-CA----A-A-T-A----CA---A-GTCT-TTGNTA----TGACGA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGN---CAGCGTAT---AA-TAA-T-TG-GCG-CAAGTT-AAA-GTTCAT--AA-GGCGCCACAA--A-TAAN--GCA-NCGGN--TA-T---AAATATTGACAACTTGNTCNGATGTCNGTGAAGTGACGTTNACATAGCATCTCAGGTACTTNGGTTTAAATTATATTTACAAGAT--TCTCTCTTTCGTTCTATTGTAAATGATATAAATTGTATTTTTTCTAATACTTTGTAAATACGGCAATAATCGTAGTTAGGTTACATCCANTGGCANATACATCAAAATATGTTTTACTGCAGGGTGTTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGACAGGTCATACAATATAGTAGATTTTGTAGATTTGCAC---------TTC-ATTGGTGAA---TTT---ACATT-AAATTT-----CAT-TCCGTTTTTTGTAT-----TAGTTAACCGCATCGTGGATTCTCGCATCTGGAAACTGCATGTATTTTCTTCTTAATCGNNTGNGAATTTGGCTCTNGTNAGNANTTNTCTTCAGGTTTNNGNGNTTAANGTCGACTGTAGAT-AACGTTCTTNANT--TCGATGACGTTCCTTAGAT-TTTCGGATTGTGTGNACAATCGGAAAGCANTNTTTAACANAATNATTGCATATTACATATTACGGGGATTGTGAGTTACGAACGGAAGGNNNATTTGTTTTTCTGATTTCATCCTGGGTTCCCGATTTTTCTGGAGTTCCGAAGTTCTGNGATTGGTATACGANTNTATGCCTTTTCTATAGCGATATNTATTAAATTTTCCGGATATCTTCTGTCTAAGTAAAGAGGAAACTATGTTGCTAATTTTTATATGACGTTTTTCCCCTCCTGTTTTNAATATACTCANNCGTTCCACNATANNGCANACNCGTCTNGCCTNGTTGAACGGTATGCTGCGTCTAGCATGTGCNNGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTCATGTGGAATGGACCAAAACATAAAACAATCGTCTAAAAAT-CGCTTCCAATTAGACATTATGTATTGCGCAAATTATTTTCCATAATAACTTGTCTGTGTTTCGAAATAATTTCTCTTTTCGAAATCCCAATATTTGGTTAGCATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTGTAAGACGTGTTATA-TGTTAAACATACAATAGTTA-TATCGAGTACTAATTGTAATCTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCATANNANGAATGTTCANCCACTAGGGTCCGTTCTTNNTTTCTTTGGGCTTGTTAATCTTT
gi|1 : GAAATAATTATCTACATT--TA-T-CACAC-TT-AG---C-GCT-TT-C-GCCTT--GT-C-GGC--TC---TT---CAAAGA------GTGTAATGATTT-CA----A-A-T-A----CAC--A-GTCT-TTGTTA----TGACAA-TGTAA--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGC--AT---AA-AAA-T-TG-GCG-CAAGTT-AAA-GTCAAT--AA-GGCGCCATAA--A-TAAA--GCA-ATGGA--TA-T---AAATAT-GACAA-TTGA--GGA-----GTAAA-TGA--TTAAAATAGCAT-TCA---ACTTCGTTTTAAATAAT-TTTACAAAATAGTCT-TCTTTCGCTCT-CCGTAAATG-------TT-CATTGTTTCTAAAACTTTGTAGAAACGGAAA-AATTAAA---AAGTT---TCCATTAGCACATAAATCAAA---TGTTT-ACTGCAGGGTGT-ATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGTACAAATCATGCAATATATTAAATCATG--GATTTACATGACATATTGTTCGAATGGTGAAAGTTTTGCCACATTTAAACGTGAAAGTATCTCCTGTTTTTAAATAAGGGCAGGTA-CTGCAACGGGGATCCATACATTTGGAAACTGTA-GT-TTTTCCTTTTA-TTGGTTGAAAATTTGGCTCTGGTCAGTAGTT-TCTTTAGATT-AGGAGGTTGAAGTCGACTGTAGAT-AATGTTCTTCATT--TCAATGATGCTCCTTAGAT-TTTCGGATTGT-TATA-AATAGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTAC-CGGATTGTGAGTTACG-ACG--AGGTGGATTTG-ATTTCTGATTCCATCCTGAGTTCCCGA--TTTCTGAAGTTCCGAAGTTCTGAGATTGGTATA-GAATCTA-GCCTTCTCTATAGCGATATATATTAAATTTGTCGGATAT-TTGTGTCTAAGTAAAAA-------ATGTTGTTAATTCCTGTA-GACGTTTATTCTCTTCTGTTTTCA------TCAAACG----ACGATGGTACAAACACGTCTCGCCATGTTAAACGGTATGTTGCGTTTA-CATGTG-AGGGATGACAAGAATTGAATAT-CAGGTACTGGTGTGAGT-CCGTTT--TCTTGTAGTATAAATCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATATT-ATGTGATTTGGACCAAAAAATGAAACAATCGTCTAAATATGCGCTTCCAGTTAGATTTTATGTATTGCGCAACTTGATTTTCA-AATAATCTGTCTGTGTTTTCAAATAATTT-TCCTCTAGGAATCCTAGTACTAGGGTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAATAAGTGTT-TGTTGTCGAACATAGAATAGTTGTTCTCTAGTACTAATTTTAATCCCTCT
gi|1 : AATTGGTCTTAGCTTTAAATCTGATGGTTGTGGTAATTTGGCGTAACACGAGTTTTCACTTATTA--ATCTGTTCTGGATCTCTTTGGATTTGTGAATCTTTaagatgtctttggaaaatctaggattaatttcgctttggtgtttatcgatccagaatgcaattgcttctgtatgtggtatgttgtatacagagagtgacatcaaaaagccatttttggtatcaacctcaacttgttctggggatatggctgaggaaattctaaaatcgttaagaagtatgtctaataaattgctgagtatgtgggtggaacaagcaggtccggctacaattggtcttagctttaaatctgatggttgtggtaatttggcgtaacacgagttttcacttattaatctgttctggatctctttggatttgtgaatcttt
gi|11 : gaaataattatctacatttatcacacttagcgctttcgccttgtcggctcttcaaagagtgtaatgatttcaaatacacagtctttgttatgacaatgtaattaagacgtcgttattgtgacgtcataaaggcagcataaaaattggcgcaagttaaagtcaataaggcgccataaataaagcaatggatataaatatgacaattgaggagtaaatgattaaaatagcattcaacttcgttttaaataattttacaaaatagtcttctttcgctctccgtaaatgttcattgtttctaaaactttgtagaaacggaaaaattaaaaagtttccattagcacataaatcaaatgtttactgcagggtgtattcctgacggatgggtcccgtgtcggttgctgtggactctcacacggtcagctaacttagttcggtctgtcctatgtaattttctccgcaggagtacaaatcatgcaatatattaaatcatggatttacatgacatattgttcgaatggtgaaagttttgccacatttaaacgtgaaagtatctcctgtttttaaataagggcaggtactgcaacggggatccatacatttggaaactgtagtttttccttttattggttgaaaatttggctctggtcagtagtttctttagattaggaggttgaagtcgactgtagataatgttcttcatttcaatgatgctccttagattttcggattgttataaataggaaagcattgtttaacagaattatacatattaatattaccggattgtgagttacgacgaggtggatttgatttctgattccatcctgagttcccgatttctgaagttccgaagttctgagattggtatagaatctagccttctctatagcgatatatattaaatttgtcggatatttgtgtctaagtaaaaaatgttgttaattcctgtagacgtttattctcttctgttttcatcaaacgacgatggtacaaacacgtctcgccatgttaaacggtatgttgcgtttacatgtgagggatgacaagaattgaatatcaggtactggtgtgagtccgttttcttgtagtataaatccgttgtaattttcctgttcttcttttttacgaggatatccaaaaaaagtagttctgtgctgcttgtttccaccgtaaattgaatcgagggatgtaaactgttcaaacacattatgaaagctctctaatattatgtgatttggaccaaaaaatgaaacaatcgtctaaatatgcgcttccagttagattttatgtattgcgcaacttgattttcaaataatctgtctgtgttttcaaataattttcctctaggaatcctagtactagggtagcatatgtggggcgactagtagtacccatggctgttccttttatttgtaataagtgtttgttgtcgaacatagaatagttgttctctagtactaattttaatccctctaagatgtctttggaaaatctaggattaatttcgctttggtgtttatcgatccagaatgcaattgcttctgtatgtggtatgttgtatacagagagtgacatcaaaaagccatttttggtatcaacctcaacttgttctggggatatggctgaggaaattctaaaatcgttaagaagtatgtctaataaattgctgagtatgtgggtggaacaagcaggtccggctacGATATTATTATCTACATT--TA-T-CACAG-AT-CG---C-GCT-TT-T-GCATT--GT-C-GGC--TC---TT---C-A-GG------GTGTAACATTTT-CA----A-A-
gi|13 : gagacggggtnnnnnnnnnnnnnnnnnnnnnnnnnagagagagagagagagagagagaggacgggactctaaagatggctgTAGCTACATT--TCTT-TACAC-TTAAG---C-GC--TT-C-GCCTT--GA-C-GGC--GC---TT---C-A-TA------GTGTAACAATTT-CA----A-A-T-G----CACTGA-GTATATTGTTA----TGAC-A-TGTAG--TTAA--GA
gi|14 : AATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCATACAACGAATGTTCACCTACTA--GTCCGTTCTTTATTTCTTTGGGCTTGTTAATCTTTtt
gi|15 : AATTAGCCTTAGTTT-AAATCTGATGGTTGTAGTAATATGGCATAACAAGAATGTTCAACCACTAGGGTCCGTTCTTATTTTCTTT-GGCTTGTTAATCTTT
gi|2 : GAAATA-TTATCTA-ATTC-TA-T-CACACATT-AAAGAC-GCT-TTTC-GCCTCTAGTAC-GACCGTCATATTACCCGA-GATATCATACGTAATGATATACA----A-AAT-AGCAACA---A-GTCT-TTAGTAGTACTGACGAGTGTAG--T-AA--GACGTCAAGTATTTT--TGCTGAC-GCTCTTTTAT--A--AAGG---CAGCATATTTAAA-TAA-TATGTGCG-CAAGTTTAAA-GCTCAT--ACCGGCGCC-CAATTA-TAAA----A-ACGGTAGTA-TCTAAAATATTGACA---TGATCTGA-GTCTGTGAAATGACGTTTACATAGCAT-TCAGGTACTTCGG
gi|2 : tAATGACAAATACATCAAAATATGTTTTACTGCAGGGTGTTATTaggtattcccattattaacacattatatttctctcttaaacaaatcgagtatccttttcgctctccagcagtatacatgattcttattcgctctttctctacaacttaaggaattttttggtatccaggataaaatcataactattataagttttctctgacatactttttaatgacaaatacatcaaaatatgttttactgcagggtgttattt
gi|22 : tgaaatattatctaattctatcacacattaaagacgcttttcgcctctagtacgaccgtcatattacccgagatatcatacgtaatgatatacaaaatagcaacaagtctttagtagtactgacgagtgtagtaagacgtcaagtatttttgctgacgctcttttataaaggcagcatatttaaataatatgtgcgcaagtttaaagctcataccggcgcccaattataaaaacggtagtatctaaaatattgacatgatctgagtctgtgaaatgacgtttacatagcattcaggtacttcggaggtattcccattattaacacattatatttctctcttaaacaaatcgagtatccttttcgctctccagcagtatacatgattcttattcgctctttctctacaacttaaggaattttttggtatccaggataaaatcataactattataagttttctctgacatactttttAGTATGTGTT--GATGGCAAGATTTAAA-AGCCAAATACTGATGTGTTATCCG-TCTTCCTTGCAAAATATGTt
gi|23 : ATTATC---ATT--TA-T-TCCAG----AG---C-GCT-TT-C-GCCCT--A--C-GGC--TC---TT---TGA-CA-------TG---GGATTT-CT----A-A-TAA----CA---A-aattgaactttt
gi|3 : gaagatttcacAATAATTATTTACATTGTTAGTGCACAC-TT-AG---CAGCTGTT-T-GCAAT--GT-TAGGCCGTC---TT---CAG-AA------GT-TAATGTTTT-CATCCGACA-T-A----CA---AAGTCT-TTGATT----TG-CAG-TGTAGGTTTAA--GACATCG----TTATATTG-TGACAG-----TCATGTA--AAGCTCTCAGCGTAT---AC-TAAAT-TG-GCGTCAAGTT-AAA-GTCCAT--AA-GCTCCCACAA--GCTAAGTGGTA-TTTGT--TAGT---ACA-ATTGACAACTTGT--GGATGT---TAAAGTGA---TTA-ATAGCATCTCA---ACTTGGGTTTAAATTATATTTACAAGAT--TCTCTCTTTCGTTCTATTGTAAATGATATAAATTGTATTTTTTCTAATACTTTGTAAATACGGCAATAATCGTAGTTAGGTTACATCCATTAGCACATATAcaaat
gi|4 : gagatcgagattgactactctggcgatgatagtaggggaaagactgagagagagacggagagaggacggaataaatccatacgatagatttgactcgTGGAAACTGCATGTATTTTTTTCTTAATCAGATGGAAATTTGGCTCTTGTCAGTA-TTATTTTCAGGTTTAGGAGCTTAACGTCGACTGTAGAT-AACGGTCTTTAGT--TCAATGACATCTCTTAGAT-GTTGGGATTGT-TGTACAATTGAAAAACAATTTTTAACATAATGA-TGTATATTA-ATATTACGGGGATTGTGAGTTACG-ACG--AGGTTGATTTA-TTTTCTGATTTCATCCTGGGTTCCCAA-TTTTCTGGAGTTCTGAAGTTCTGCGAT-------------TATG---------TAGC---ATATATT---TTTTCCGGATAT-TTCTGT
gi|4 : CTCCTGTTTTAA------TCA-----TCGACGATACTGCAAACACGTCTCGCCTTGTTAAACGGTATGCTGCGTTTAACATGTGAGGGGatgtctaattactcctgttttaatcatcgacgatactgcaaacacgtctcgccttgttaaacggtatgctgcgtttaacatgtgagggg
gi|5 : tggaaactgcatgtatttttttcttaatcagatggaaatttggctcttgtcagtattattttcaggtttaggagcttaacgtcgactgtagataacggtctttagttcaatgacatctcttagatgttgggattgttgtacaattgaaaaacaatttttaacataatgatgtatattaatattacggggattgtgagttacgacgaggttgatttattttctgatttcatcctgggttcccaattttctggagttctgaagttctgcgattatgtagcatatattttttccggatatttctgtatgtctaattaACGTCGACTGTAAATTAATGTTCTTCAATCTTCAATGAATGTCCTTAGAT-TTTCGGAT-GTGTAAA-AATCGGAAAGCATTGTT-AACAGAATTATTACA-ATTACATATTACGGG-ATTGTGAGTTACGAACGGAAGGGGCATTTGTTTTTCTGATTTCATCCTGAGTTTCCGA-TTTTCT-GAGTTCCGAAGTTCTGAGATTGGTATACGACTCTATGCCTTTTCTATAGCGATATCT-TTAAATTTTC--GATATCTTCTGTCTAAGTAAAGAGGAAACTATGTTG-TAA
gi|6 : ATT--TA-T-TCCAG----AG---C-GCT-TT-CCGCCCT--A--C-GGC--TC---TT---CA----------GTGGAA---TTT-CA----A-A-------------A-----------A----TAACAA-TATCA--TAAATTGACGTCG----CTAT--TA-TGAC-G-----TCAT--AGTAAGA---CAACGT-T---AATTTT-T-TG-GCG-CAA--T-AAATGTTAATGAAA-TGCACCA-AA--A-TAAT--GCCTGTGGC--TC-T---AAAT
gi|7 : atatataataattgagttgaagatttcacattAGGACAGGTCATACAATATAGTAGATTTTGTAGATTTGCAC---------TTC-ATTGGTGAA---TTT---ACATT-AAATTT-----CAT-TCCGTTTTTTGTAT-----TAGTTAACCGCATCGTGGATTCTCGCATCTGAAAAC----------TTCTT-------GTTTGTGAATTTAGTTTTAGTGAGAAATTTTCTTCAAATTT-TGTGGTTAAAGTCTACTGTGGAG-TATATTCGTGGAC--TGGATGAGATTCTTTA-ATGTTTCTGACTGtataattttcaaacattttttttaaggaagaaattaaaaat
gi|8 : tAATCTTCATGTGGAATGGACCAAAACATAAAACAATCGTCTAAAAAT-CGCTTCCAATTAGACATTATGTATTGCGCAAATTATTTTCCATAATAACTTGTCTGTGTTTCGAAATAATTTCTCTTTTCGAAATCCCAATATTTGGTTAGCATATAT
gi|8 : TATTTGTAAGACGTGTTATA-TGTTAAACATACAATAGTTA-TATCGAGTACTAATTGTAATCTCTCTttgtaagacgtgttatatgttaaacatacaatagttatatcgagtactaattgtaatctctcttat
gi|9 : aatcttcatgtggaatggaccaaaacataaaacaatcgtctaaaaatcgcttccaattagacattatgtattgcgcaaattattttccataataacttgtctgtgtttcgaaataatttctcttttcgaaatcccaatatttggttagcataTTTTTATATGATGTTTTTCCCCTTCT----TCAATATACTCACACGTTCCACTATAGAGCATATCCGTCTGGCTTAGTTGAATGGTATGTTACG-CT-GTATGTGCCCGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCTGTtat
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CATTTAATCCAGATAGCGTTCCCCTACGGCGATGCAGTGCATTTGCGAATAATAGCAATCTCATAAATAGACGTATATATTATGGCGTCATAGTAAGTCAAAGTTAATTTTATTTAGCAATGTATGGCAATGAAATGCACCAAAATAATAAAACAT
Unaligned ( gi|12 ): TAATTGAAGTTGAACGTATATATCCCATCATTTCATTCCAGCAGCGCTTTTCGGCCCTACGGCTCTCTTTCAGTCGTGAATTTCACAATCAATAACAATATTACTATCACTACTATACTATATTAATATAATAATCGTTACTT
Unaligned ( gi|16 ): TTGAGTAGAAGATTTCGCATCATTTTATTCCAGAGCACTTTCGCCCTACGGTTTTTACTGGAATTTCAAATAACAATATCATAAATCGACCTCAC
Unaligned ( gi|17 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|18 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|19 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|20 ): ATATATATATATAAGAACAGGTATTTAAAGTAGGGTATTTCACATTTAATTTCTTCCGAAGCGCTATCGCGCTACACGGCTCATCAGTGGA
Unaligned ( gi|21 ): TATATAAATACATATATAGAAAAATTGAGTTGAAGATTTCACATTATTTATTCCAGAGCGCTTTCGCCCTAGCGCTCTGGAATAAAATAA
Unaligned ( gi|24 ): ACCATATTGAAATAACGTTGCAATTTAATGATGTCATAGTAGCAGACGTCCGTCGATTTTTGGCGCAATAGATTT
Unaligned ( gi|25 ): ATATATATATATATTCAAATGAAAAAAACTGAGTTGAAGATTTCACATTATCTATTCCAGAGCGCTT
Unaligned ( gi|26 ): TATGTCTATAGTTATATGTAGAAAATATTGAGTTGAAGATTTCACATTATTTATT
Unaligned ( gi|27 ): AAAAAATTGAGTTGAAGATTTTCACATTATTTTATTCCAGAGCGCT
Alignments
lowQualScore : 11 1111111111 11111 11 111 333333333333333 1111 3333333333333 1111 11 11 2222 11 1 1 22222 11111 1111 111111111111 1 1 1 1 11 1 11 1111 111 111 222 22 11 1 44444 222222222 1 222 6666666666666666 222 555555555 1 222 11 2222222 44444444 555555555 1 222 666666666666666666666 33333 222 1 1 11 333333333 1 11 2222 1 22222 1 22222 1 333333333 2222 11 11 1 11 1 1 1 1 1 1 1 2 1 11 1 1 33333333333 1 3333333 11 666666666666666666 111 11 1 1 2222 1 1 1 1 1 1 11 11
lowQualScore : 0 2 33 5 888 5555555555 5 5 666 66666 5 55 000 333333333333333 1 7 1 5 2222 5 0000000000000 6 8 3 7777 0 3 8 11 6 11 1111 33 0 0 55555 88888 7777 666 999999999999 0 0 2 0 0 1 33 0 0 99 33 3333 555 0 777 333 7 00 88 3 44444 0 555555555 3 333 1111111111111111 333 1 7 333333333 2 555 6 88 5555555 00000000 6 1 1 333333333 3 1 1 000 11 222222222222222222222 33333 1 111 5 5 1 1 1 88 888888888 5 1 88 3333 5 2 66666 5 22 1 66666 1 5 1 1 1 000000000 0000 1 1 77 44 1 0 0 1 33 0 0 2 0 0 7 3 3 7 3 7 3 3 3 88 3 7 2 77777777777 7 6 3 6 7 7 6 3 2222222 0 7 11 111 3 6 555555555555555555 000 11 2 3 6 3 7777 1 5 22 1 1 5 1 1 1 5 2 5 1 1 1 1 1 5 5 1 66 1 1 7 0 88 1 6
lowQualScore : . . .. . ... .......... . . ... ..... . .. ... ............... . . . . .... . ............. . . . .... . . . .. . .. .... .. . . ..... ..... .... ... ............ . . . . . . .. . . .. .. .... ... . ... ... . .. .. . ..... . ......... . ... ................ ... . . ......... . ... . .. ....... ........ . . . ......... . . . ... .. ..................... ..... . ... . . . . . .. ......... . . .. .... . . ..... . .. . ..... . . . . . ......... .... . . .. .. . . . . .. . . . . . . . . . . . . . . .. . . . ........... . . . . . . . . ....... . . .. ... . . .................. ... .. . . . . .... . . .. . . . . . . . . . . . . . . . . . .. . . . . .. . .
lowQualScore : 8 5 66 7 333 4444444444 7 7 000 99999 7 77 000 111111111111111 4 6 9 7 1111 7 7777777777777 7 0 8 0000 8 8 0 00 0 00 2222 88 0 0 00000 55555 8888 888 000000000000 0 0 5 0 0 0 88 0 2 88 88 5555 000 8 555 333 3 77 33 3 77777 7 000000000 3 333 0000000000000000 333 0 3 333333333 0 777 7 33 0000000 00000000 7 0 0 333333333 3 0 0 333 77 777777777777777777777 33333 0 555 5 5 0 0 0 55 000000000 0 0 00 0000 5 5 55555 0 00 0 00000 0 5 0 0 0 777777777 0000 0 0 00 77 0 0 2 2 88 8 0 5 0 0 3 3 7 3 3 3 3 3 3 33 3 3 0 33333333333 3 7 7 7 3 3 7 3 0000000 7 3 00 333 7 7 333333333333333333 888 88 5 3 7 3 0000 0 0 00 0 0 0 0 0 0 5 5 0 0 0 0 0 0 5 5 0 55 0 0 3 7 33 0 7
consensus : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-C-GCCTT--GT-C-GGC--TC---TT---CGA-GA------GTGTAACGATTT-CA----A-A-T-A----CA---A-GTCT-TTGNTA----TGACAA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGCGTAT---AA-TAA-T-TG-GCG-CAAGTT-AAA-GTCNAT--AA-GGCGCCACAA--ATAAAGCG-GTGGT--TAT---AAATA---TTGACAA-TTGAG--GA-GT---TGAAATGA--TT-A-A-TAGCAT-TCA---ACTTC---GGT----------TTAA---ATTATATTT---------ACAAGAT--AGTCTCTCTTTCGC--TCTANCG---TAAATGAT--T-A-TTGCATTTTTTCTAAAACT---------TTGTAG-ATACGGNA-A-AATCGTAGCTA-----AGTT-------ACATCCATT-----AGCACATANATCAAAATATGTTTTACTGCAGGGTGTTATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGNACAGGTCATGCAATATANTAGATCNTGTAGATTTGCACGACATATTGTTCGANTGGTGAAAGTTTTGCCACATTTAAACGTGAAAGCATCTCCNNTTTTTGNATAAGGGCAGNTAACCGCANCGNGGATCCNCGCATCTGGAAACTGCA-GT-TTTTCTTCTTA-TCGGTTGNAAATTTGGCTCTNGTCAGTAN-TTTCTTCAGATTTAGGAGGTTAANGTCGACTGTAGAT-AATGTTCTTCAAT--TCAATGANAT-TCCTTAGAT-TTTCGGAT-TGTTATA-AATCGGAAAGCATTGTTTAACAGAATTAT-ACATATTA-ATATTACGGG-ATTGTGAGTTACGA-CG--AGGTGGATTTGTTTT-CTGATTTCATCCTGAGTTCCCGATTTTCTGGAGTTCCGAAGTTCTGAGATTGGTATA-GA-TCTATGCCTTCTCTATAGCGATATATATTAAATTTTCCGGATAT-TTCTGTCTAAGTAAAGAGGAAACTATGTTGTTAATTTCTGTATGACGTTTATTCNCTTCTGTTTTCA------TCA-A-CG----ACGATAGTGCAAACACGTCTCGCCTTGTTAAACGGTATGTTGCGTTTAGCATGTGNCGGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCGTC--C-CTTGCAAAATATGTCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATNTTCATGTGGNNTGGACCAAAANATGAAACAATCGTCTAAANATGCGCTTCCAGTTAGACNTTATGTATTGCGCAANTTGNTTTCCATAATAACCTGTCTGTGTTTCGAAATAATTTCTCCTCTNGGAATCCCAGTACTNGGNTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAANANGTGTTATGTTGTCGAACATANAATAGTTGTTNTCNAGTACTAATTNTAATCCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCGTAACACGAATGTTCACCTACTA--GTCCGTTCTTNATTTCTTTGGGCTTGTTAATCTTT
Reference ( family-437 ) : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-C-GCCTT--GT-C-GGC--TC---TT---CGA-GA------GTGTAACGATTT-CA----A-A-T-A----CA---A-GTCT-TTGNTA----TGACAA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGCGTAT---AA-TAA-T-TG-GCG-CAAGTT-AAA-GTCNAT--AA-GGCGCCACAA--ATAAAGCA-ATGGT--TAT---AAATA---TTGACAA-TTGAG--GA-GT--GTAAAGTGA--TTTA-A-TAGCAT-TCA---ACTTC---GGT----------TTAA---ATNATATTT---------ACAAGAT--AGTCTCTCTTTCGC--TCTACCG---TAAATGAT-ATAAATTGCATTNTTTCTAANACT---------TTGTAG-ANACGGNA-ATAATCGNAGTTA-----GGTT-------ACATCCATT-----AGCACATANATCAAAATATGTTTTACTGCAGGGTGTTATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGNACAGGTCATGCAATATANTAGATCNTGTAGATTTGCACGACATATTGTTCGANTGGTGAAAGTTTTGCCACATTTAAACGTGAAAGCATCTCCNNTTTTTGNATAAGGGCAGNTAACCGCANCGNGGATCCNCGCATCTGGAAACTGCA-GT-TTTTCTTCTTA-TCGGTTGNAAATTTGGCTCTNGTCAGTAG-TTTCTTCAGATTTAGGAGGTTAANGTCGACTGTAGAT-AATGTTCTTCAAT--TCAATGANAT-TCCTTAGAT-TTTCGGAT-TGTTATA-AATCGGAAAGCATTGTTTAACAGAATTAT-ACATATTA-ATATTACGGGGATTGTGAGTTACGA-CG--AGGTGGATTTGTTTT-CTGATTTCATCCTGAGTTCCCGATTTTCTGGAGTTCCGAAGTTCTGAGATTGGTATA-GA-TCTATGCCTTCTCTATAGCGATATATATTAAATTTTCCGGATAT-TTCTGTCTAAGTAAAGAGGAAACTATGTTGTTAATTCCTGTATGACGTTTNTCCCCTTCTGTTTTCA------TCA-A-CGT--CACGATAGTGCAAACACGTCTCGCCTTGTTAAACGGTATGTTGCGTTTAGCATGTGNNGGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCGTC--C-CTTGCAAAATATGTCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATNTTCATGTGGNNTGGACCAAAANATGAAACAATCGTCTAAANATGCGCTTCCAGTTAGACNTTATGTATTGCGCAANTTGNTTTCCATAATAACCTGTCTGTGTTTCGAAATAATTTCTCCTCTNGGAATCCCAGTACTNGGNTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAANANGTGTTATGTTGTCGAACATANAATAGTTGTTNTCNAGTACTAATTNTAATCCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCGTAACACGAATGTTCACCTACTA--GTCCGTTCTTNATTTCTTTGGGCTTGTTAATCTTT
gi|1 : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-C-GCCTT--GT-C-GGC--TC---TT---CAAAGA------GTGTAATGATTT-CA----A-A-T-A----CAC--A-GTCT-TTGTTA----TGACAA-TGTAA--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGC--AT---AA-AAA-T-TG-GCG-CAAGTT-AAA-GTCAAT--AA-GGCGCCATAA--ATAAAGCA-ATGGA--TAT---AAATA---T-GACAA-TTGAG--GA-GT-----AAATGA--TTAA-AATAGCAT-TCA---ACTTC---GTT----------TTAA---ATAAT-TTT---------ACAAAAT--AGTCT-TCTTTCGC--TCT-CCG---TAAATG--------TT-CATTGTTTCTAAAACT---------TTGTAG-AAACGGAA-A-AATTAAA---A-----AGTT----------TCCATT-----AGCACATAAATCAAA---TGTTT-ACTGCAGGGTGT-ATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGTACAAATCATGCAATATATTAAATCATG--GATTTACATGACATATTGTTCGAATGGTGAAAGTTTTGCCACATTTAAACGTGAAAGTATCTCCTGTTTTTAAATAAGGGCAGGTA-CTGCAACGGGGATCCATACATTTGGAAACTGTA-GT-TTTTCCTTTTA-TTGGTTGAAAATTTGGCTCTGGTCAGTAG-TTTCTTTAGATT-AGGAGGTTGAAGTCGACTGTAGAT-AATGTTCTTCATT--TCAATGATGC-TCCTTAGAT-TTTCGGAT-TGTTATA-AATAGGAAAGCATTGTTTAACAGAATTAT-ACATATTA-ATATTACCGG-ATTGTGAGTTACGA-CG--AGGTGGATTTGATTT-CTGATTCCATCCTGAGTTCCCGATTT-CTGAAGTTCCGAAGTTCTGAGATTGGTATA-GAATCTA-GCCTTCTCTATAGCGATATATATTAAATTTGTCGGATAT-TTGTGTCTAAGTAAAAA-------ATGTTGTTAATTCCTGTA-GACGTTTATTCTCTTCTGTTTTCA------TCA-AACG----ACGATGGTACAAACACGTCTCGCCATGTTAAACGGTATGTTGCGTTTA-CATGTGA-GGGATGACAAGAATTGAATATC-AGGTACTGGTGTGAGT-CCGTT--TTCTTGTAGTATAAATCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATATT-ATGTGATTTGGACCAAAAAATGAAACAATCGTCTAAATATGCGCTTCCAGTTAGATTTTATGTATTGCGCAACTTGATTTTCA-AATAATCTGTCTGTGTTTTCAAATAATTT-TCCTCTAGGAATCCTAGTACTAGGGTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAATAAGTGTT-TGTTGTCGAACATAGAATAGTTGTTCTCTAGTACTAATTTTAATCCCTCT
gi|1 : AATTGGTCTTAGCTTTAAATCTGATGGTTGTGGTAATTTGGCGTAACACGAGTTTTCACTTATTA--ATCTGTTCTGGATCTCTTTGGATTTGTGAATCTTTaagatgtctttggaaaatctaggattaatttcgctttggtgtttatcgatccagaatgcaattgcttctgtatgtggtatgttgtatacagagagtgacatcaaaaagccatttttggtatcaacctcaacttgttctggggatatggctgaggaaattctaaaatcgttaagaagtatgtctaataaattgctgagtatgtgggtggaacaagcaggtccggctacaattggtcttagctttaaatctgatggttgtggtaatttggcgtaacacgagttttcacttattaatctgttctggatctctttggatttgtgaatcttt
gi|11 : gaaataattatctacatttatcacacttagcgctttcgccttgtcggctcttcaaagagtgtaatgatttcaaatacacagtctttgttatgacaatgtaattaagacgtcgttattgtgacgtcataaaggcagcataaaaattggcgcaagttaaagtcaataaggcgccataaataaagcaatggatataaatatgacaattgaggagtaaatgattaaaatagcattcaacttcgttttaaataattttacaaaatagtcttctttcgctctccgtaaatgttcattgtttctaaaactttgtagaaacggaaaaattaaaaagtttccattagcacataaatcaaatgtttactgcagggtgtattcctgacggatgggtcccgtgtcggttgctgtggactctcacacggtcagctaacttagttcggtctgtcctatgtaattttctccgcaggagtacaaatcatgcaatatattaaatcatggatttacatgacatattgttcgaatggtgaaagttttgccacatttaaacgtgaaagtatctcctgtttttaaataagggcaggtactgcaacggggatccatacatttggaaactgtagtttttccttttattggttgaaaatttggctctggtcagtagtttctttagattaggaggttgaagtcgactgtagataatgttcttcatttcaatgatgctccttagattttcggattgttataaataggaaagcattgtttaacagaattatacatattaatattaccggattgtgagttacgacgaggtggatttgatttctgattccatcctgagttcccgatttctgaagttccgaagttctgagattggtatagaatctagccttctctatagcgatatatattaaatttgtcggatatttgtgtctaagtaaaaaatgttgttaattcctgtagacgtttattctcttctgttttcatcaaacgacgatggtacaaacacgtctcgccatgttaaacggtatgttgcgtttacatgtgagggatgacaagaattgaatatcaggtactggtgtgagtccgttttcttgtagtataaatccgttgtaattttcctgttcttcttttttacgaggatatccaaaaaaagtagttctgtgctgcttgtttccaccgtaaattgaatcgagggatgtaaactgttcaaacacattatgaaagctctctaatattatgtgatttggaccaaaaaatgaaacaatcgtctaaatatgcgcttccagttagattttatgtattgcgcaacttgattttcaaataatctgtctgtgttttcaaataattttcctctaggaatcctagtactagggtagcatatgtggggcgactagtagtacccatggctgttccttttatttgtaataagtgtttgttgtcgaacatagaatagttgttctctagtactaattttaatccctctaagatgtctttggaaaatctaggattaatttcgctttggtgtttatcgatccagaatgcaattgcttctgtatgtggtatgttgtatacagagagtgacatcaaaaagccatttttggtatcaacctcaacttgttctggggatatggctgaggaaattctaaaatcgttaagaagtatgtctaataaattgctgagtatgtgggtggaacaagcaggtccggctacGATATTATTATCTACATT--TA-T-C-ACAG-ATC-G---C-GCT-TT-T-GCATT--GT-C-GGC--TC---TT---C-A-GG------GTGTAACATTTT-CA----A-A-
gi|13 : gagacggggtnnnnnnnnnnnnnnnnnnnnnnnnnagagagagagagagagagagagaggacgggactctaaagatggctgTAGCTACATT--TC-T-TTACAC-TTAAG---C-GCT-T--C-GCCTT--GA-C-GGC--GC---TT---C-A-TA------GTGTAACAATTT-CA----A-A-T-G----CACTGA-GTATATTGTTA----TGAC-A-TGTAG--TTAA--GA
gi|14 : AATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCATACAACGAATGTTCACCTACTA--GTCCGTTCTTTATTTCTTTGGGCTTGTTAATCTTTtt
gi|15 : AATTAGCCTTAGTTT-AAATCTGATGGTTGTAGTAATATGGCATAACAAGAATGTTCAACCACTAGGGTCCGTTCTTATTTTCTTT-GGCTTGTTAATCTTT
gi|2 : GAAATA-TTATCTA-ATTC-TA-T-C-ACACATTA-AAGAC-GCT-TTTC-GCCTCTAGTAC-GACCGTCATATTACCCGA-GATATCATACGTAATGATATACA----A-AAT-AGCAACA---A-GTCT-TTAGTAGTACTGACGAGTGTAG--T-AA--GACGTCAAGTATTTT--TGCTGAC-GCTCTTTTAT--A--AAGG---CAGCATATTTAAA-TAA-TATGTGCG-CAAGTTTAAA-GCTCAT--ACCGGCGCC-CAATTATAAA--A-ACGGTAGTATCTAAAATA---TTGACA---TGATCTGA-GTCTGTGAAATGACGTTTACA-TAGCAT-TCAGGTACTTCGGAGGTATTCCCATTATTAACACATTATATTTCTCTCTTAAACAA-ATCGAGTATCCTTTTCGCTCTCCAGCAGTATACATGATTCTTATTCGCTCTTTCTCTACAACTTAAGGAATTTTTTGGTATCCAGGATAAAATCATAACTATTATAAGTTTTCTCTGACATACTTTTTAATGACAAATACATCAAAATATGTTTTACTGCAGGGTGTTATT
gi|22 : tAGTATGTGTTG--ATGGCAAGATTTAAA-AGCCAAATACTGATGTGTTATCCGTCTTC-CTTGCAAAATATGTt
gi|23 : ATTATC---ATT--TA-T-T-CCAG---A-G---C-GCT-TT-C-GCCCT--A--C-GGC--TC---TT---TGA-CA-------TG---GGATTT-CT----A-A-TAA----CA---A-aattgaactttt
gi|3 : gaagatttcacAATAATTATTTACATTGTTAGTGC-ACAC-TTA-G---CAGCTGTT-T-GCAAT--GT-TAGGCCGTC---TT---CAG-AA------GT-TAATGTTTT-CATCCGACA-T-A----CA---AAGTCT-TTGATT----TG-CAG-TGTAGGTTTAA--GACATCG----TTATATTG-TGACAG-----TCATGTA--AAGCTCTCAGCGTAT---AC-TAAAT-TG-GCGTCAAGTT-AAA-GTCCAT--AA-GCTCCCACAA--GCTAAGTG-GTATT--TGT---TAGTACAATTGACAACTTGTG--GATGT---TAAAGTGA--TT-A-A-TAGCATCTCA---ACTTG---GGT----------TTAA---ATTATATTT---------ACAAGAT----TCTCTCTTTCGT--TCTATTG---TAAATGAT-ATAAATTGTATTTTTTCTAATACT---------TTGTAA-ATACGGCA-ATAATCGTAGTTA-----GGTT-------ACATCCATT-----AGCACATATAcaaat
gi|4 : gagatcgagattgactactctggcgatgatagtaggggaaagactgagagagagacggagagaggacggaataaatccatacgatagatttgactcgTGGAAACTGCATGTATTTTTTTCTTAATCAGATGGAAATTTGGCTCTTGTCAGTAT-TATTTTCAGGTTTAGGAGCTTAACGTCGACTGTAGAT-AACGGTCTTTAGT--TCAATGACAT-CTCTTAGAT-GTTGGGAT-TGTTGTACAATTGAAAAACAATTTTTAACATAATGAT-GTATATTA-ATATTACGGGGATTGTGAGTTACGA-CG--AGGTTGATTTATTTT-CTGATTTCATCCTGGGTTCCCAATTTTCTGGAGTTCTGAAGTTCTGCGAT-------------TATG---------TAGC---ATATATT---TTTTCCGGATAT-TTCTGT
gi|4 : ATTTCTGTATG---TCTAATTACTCCTGTTTTAA------TCA-T-CG----ACGATACTGCAAACACGTCTCGCCTTGTTAAACGGTATGCTGCGTTTAACATGTGAGGGGatgtctaattactcctgttttaatcatcgacgatactgcaaacacgtctcgccttgttaaacggtatgctgcgtttaacatgtgagggg
gi|5 : tggaaactgcatgtatttttttcttaatcagatggaaatttggctcttgtcagtattattttcaggtttaggagcttaacgtcgactgtagataacggtctttagttcaatgacatctcttagatgttgggattgttgtacaattgaaaaacaatttttaacataatgatgtatattaatattacggggattgtgagttacgacgaggttgatttattttctgatttcatcctgggttcccaattttctggagttctgaagttctgcgattatgtagcatatattttttccggatACGTCGACTGTAAATTAATGTTCTTCAATCTTCAATGA-ATGTCCTTAGAT-TTTCGGATGTGTAA-A-AATCGGAAAGCATTGTT-AACAGAATTATTACA-ATTACATATTACGGG-ATTGTGAGTTACGAACGGAAGGGGCATTTGTTTTTCTGATTTCATCCTGAGTTTCCGATTTTCTG-AGTTCCGAAGTTCTGAGATTGGTATACGACTCTATGCCTTTTCTATAGCGATATCT-TTAAATTTTC--GATATCTTCTGTCTAAGTAAAGAGGAAACTATGTTGT
gi|6 : ATT--TA-T-T-CCAG---A-G---C-GCT-TT-CCGCCCT--A--C-GGC--TC---TT---C----A------GTGGAA---TTT-CA----A-A-------------A-----------A----TAACAA-TATCA--TAAATTGACGTCG----CTAT--TA-TGAC-G-----TCAT--AGTAAGA---CAACGT-T---AATTTT-T-TG-GCG-CAA--T-AAATGTTAATGAAA-TGCACCA-AA--ATAATGCCTGTGGC--TCT---AAATaa
gi|7 : atatataataattgagttgaagatttcacattAGGACAGGTCATACAATATAGTAGATTTTGTAGATTTGCAC---------TTC-ATTGGTGAA--TTT----ACA-TTAAATTT-----CAT-TCCGTTTTTTGTAT-----TAGTTAACCGCATCGTGGATTCTCGCATCTGAAAA-------------CTTCTTG-T---TTGTGAATTTAGTTTTAGTGAGAAATTTTCTTCAAATTT-TGTGGTTAAAGTCTACTGTGGAG-TATATTCGTGGAC--TGGATGAGAT-TCTTTA-ATGTTTCTGAC-TGtataattttcaaacattttttttaaggaagaaattaaaaat
gi|8 : tAATCTTCATGTGGAATGGACCAAAACATAAAACAATCGTCTAAAAAT-CGCTTCCAATTAGACATTATGTATTGCGCAAATTATTTTCCATAATAACTTGTCTGTGTTTCGAAATAATTTCTCTTTTCGAAATCCCAATATTTGGTTAGCATATAT
gi|8 : TATTTGTAAGACGTGTTATAT-GTTAAACATACAATAGTTAT-ATCGAGTACTAATTGTAATCTCTCTttgtaagacgtgttatatgttaaacatacaatagttatatcgagtactaattgtaatctctcttat
gi|9 : aatcttcatgtggaatggaccaaaacataaaacaatcgtctaaaaatcgcttccaattagacattatgtattgcgcaaattattttccataataacttgtctgtgtttcgaaataatttctcttttcgaaatcccaatatttggttagcataTTTTTATATGATGTTTTTCCCCTTCT----TCAATATACTCACA-CGTTCCACTATAGAGCATATCCGTCTGGCTTAGTTGAATGGTATGTTACGCT--GTATGTGCCCGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCGTC--C-CTTGCAAAATATGTCTGTtat
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CATTTAATCCAGATAGCGTTCCCCTACGGCGATGCAGTGCATTTGCGAATAATAGCAATCTCATAAATAGACGTATATATTATGGCGTCATAGTAAGTCAAAGTTAATTTTATTTAGCAATGTATGGCAATGAAATGCACCAAAATAATAAAACAT
Unaligned ( gi|12 ): TAATTGAAGTTGAACGTATATATCCCATCATTTCATTCCAGCAGCGCTTTTCGGCCCTACGGCTCTCTTTCAGTCGTGAATTTCACAATCAATAACAATATTACTATCACTACTATACTATATTAATATAATAATCGTTACTT
Unaligned ( gi|16 ): TTGAGTAGAAGATTTCGCATCATTTTATTCCAGAGCACTTTCGCCCTACGGTTTTTACTGGAATTTCAAATAACAATATCATAAATCGACCTCAC
Unaligned ( gi|17 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|18 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|19 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|20 ): ATATATATATATAAGAACAGGTATTTAAAGTAGGGTATTTCACATTTAATTTCTTCCGAAGCGCTATCGCGCTACACGGCTCATCAGTGGA
Unaligned ( gi|21 ): TATATAAATACATATATAGAAAAATTGAGTTGAAGATTTCACATTATTTATTCCAGAGCGCTTTCGCCCTAGCGCTCTGGAATAAAATAA
Unaligned ( gi|24 ): ACCATATTGAAATAACGTTGCAATTTAATGATGTCATAGTAGCAGACGTCCGTCGATTTTTGGCGCAATAGATTT
Unaligned ( gi|25 ): ATATATATATATATTCAAATGAAAAAAACTGAGTTGAAGATTTCACATTATCTATTCCAGAGCGCTT
Unaligned ( gi|26 ): TATGTCTATAGTTATATGTAGAAAATATTGAGTTGAAGATTTCACATTATTTATT
Unaligned ( gi|27 ): AAAAAATTGAGTTGAAGATTTTCACATTATTTTATTCCAGAGCGCT
Alignments
lowQualScore : 11 1111111111 1 11111 11 111 333333333333333 1111 333333333333333 1111 11 11 2222 11 1 1 22222 11111 1111 111111111111 1 1 11 1 1111 11 1 1 1 111 222 22 11 1 33333 222 2222 1 222 6666666666666666 222 555555555 1 222 44444444 44444444 22222 44444444 2222 1 6666666666666666666666666666666 222 1 1 11 333333333 1 11 2222 1 22222 1 22222 1 333333333 2222 1 11 1 11 1 1 1 1 1 1 1 1 1 11 1 333333333333 1 3333333 11 444444444444444444 111 11 1 1 1 11 1 1 1 1 1 1 11 11
lowQualScore : 0 2 33 5 888 5555555555 5 5 1 66666 5 55 000 333333333333333 1 55 5 2222 5 222222222222222 8 3 7777 0 3 8 11 6 11 1111 33 0 0 55555 88888 7777 666 999999999999 0 0 22 0 1 4444 0 99 33 0 0 0 3 0 777 333 7 00 88 3 44444 333 2222 3 333 1111111111111111 333 7 333333333 2 555 6 22222222 22222222 77777 88888888 8888 1 3 0 7777777777777777777777777777777 1 111 5 5 1 1 1 88 888888888 5 1 88 3333 5 2 66666 5 22 1 66666 1 5 1 1 1 000000000 0000 1 1 3 1 44 1 0 0 1 33 0 0 2 0 7 3 3 3 7 3 7 3 3 3 88 3 7 6 777777777777 7 6 3 6 7 7 6 3 2222222 7 11 1 6 555555555555555555 000 33 2 3 6 3 3 88 1 5 22 1 1 5 1 1 1 5 2 5 1 1 1 1 1 5 5 1 66 1 1 7 0 88 1 6
lowQualScore : . . .. . ... .......... . . . ..... . .. ... ............... . .. . .... . ............... . . .... . . . .. . .. .... .. . . ..... ..... .... ... ............ . . .. . . .... . .. .. . . . . . ... ... . .. .. . ..... ... .... . ... ................ ... . ......... . ... . ........ ........ ..... ........ .... . . . ............................... . ... . . . . . .. ......... . . .. .... . . ..... . .. . ..... . . . . . ......... .... . . . . .. . . . . .. . . . . . . . . . . . . . . .. . . . ............ . . . . . . . . ....... . .. . . .................. ... .. . . . . . .. . . .. . . . . . . . . . . . . . . . . . .. . . . . .. . .
lowQualScore : 8 5 66 7 333 4444444444 7 7 4 99999 7 77 000 111111111111111 4 44 7 1111 7 555555555555555 0 8 0000 8 8 0 00 0 00 2222 88 0 0 00000 55555 8888 888 000000000000 0 0 55 0 0 8888 2 88 88 0 0 2 5 8 555 333 3 77 33 3 33333 333 7777 3 333 0000000000000000 333 3 333333333 0 777 7 33333333 00000000 00000 33333333 3333 0 3 7 7777777777777777777777777777777 0 555 5 5 0 0 0 55 000000000 0 0 00 0000 5 5 55555 0 00 0 00000 0 5 0 0 0 777777777 0000 0 0 3 0 77 0 0 2 2 88 8 0 5 0 0 3 3 7 3 3 3 3 3 3 33 3 3 7 333333333333 3 7 7 7 3 3 7 3 0000000 3 00 0 7 000000000000000000 888 88 5 3 7 3 3 33 0 0 00 0 0 0 0 0 0 5 5 0 0 0 0 0 0 5 5 0 55 0 0 3 7 33 0 7
consensus : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-CGCCTT--GT-C-GGC--TC---TT---CGA-GA------GTGTAACGATTT-CA----A-A-T-A----CA---A-GTCT-TTGNTA----TGACAA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGCGTAT---AA-TAA-T-TG-GCG-CAAG-TTAAA-GTCNAT--A-AGGCGCCACAA--AT-AAAG-CGGTGGNTAT---AAATA---TTGACAA-TTGA--GGA-GT---TGAAATGA---TTA-A--TAGCAT-TCA---ACTTC---GGT----------TTAA---ATTATATTT---------ACAAGAT--AGTCTCTCTTTCGCTCT-----ANCGTAAATGA---T-T--ATT-GC-CTTTTTCTAAAAC--------TTTGTAGATAC----GGNAA-AATCGTAGC-----TAAGTT-------ACATCC-----ATTAGCACATANATCAAAATATGTTTTACTGCAGGGTGTTATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGNACAGGTCATGCAATATANTAGATCNTGTAGATTTGCACGACATATTGTTCGANTGGTGAAAGTTTTGCCACATTTAAACGTGAAAGCATCTCCNNTTTTTGNATAAGGGCAGNTAACCGCANCGNGGATCCNCGCATCTGGAAACTGCA-GT-TTTTCTTCTTA-TCGGTTGNAAATTTGGCTCTNGTCAG-TATTTTCTTCAGATTTAGGAGGTTAANGTCGACTGTAGAT-AATGTTCTTCAAT--TCAATGANAT-TCCTTAGAT-TTTCGGATTGT-TATA-AATCGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTAC-GGGATTGTGAGTTACG-ACG--AGGTGGATTTG-TTTTCTGATTTCATCCTGAGTTCCCGATTTTCTGGAGTTCCGAAGTTCTGAGATTGGTATA-G-A-TCTATGCCTTCTCTATAGCGATATATATTAAATTTTCCGGATAT-TTCTGTCTAAGTAAAGAGGAAACTATGTTGTTAATTTCTGTATGACGTTTATTCNCTTCTGTTTTCA------TC-A-ACG----ACGATAGTGCAAACACGTCTCGCCTTGTTAAACGGTATGTTGCGTTTAGCATGTGNCGGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATNTTCATGTGGNNTGGACCAAAANATGAAACAATCGTCTAAANATGCGCTTCCAGTTAGACNTTATGTATTGCGCAANTTGNTTTCCATAATAACCTGTCTGTGTTTCGAAATAATTTCTCCTCTNGGAATCCCAGTACTNGGNTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAANANGTGTTATGTTGTCGAACATANAATAGTTGTTNTCNAGTACTAATTNTAATCCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCGTAACACGAATGTTCACCTACTA--GTCCGTTCTTNATTTCTTTGGGCTTGTTAATCTTT
Reference ( family-437 ) : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-CGCCTT--GT-C-GGC--TC---TT---CGA-GA------GTGTAACGATTT-CA----A-A-T-A----CA---A-GTCT-TTGNTA----TGACAA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGCGTAT---AA-TAA-T-TG-GCG-CAAG-TTAAA-GTCNAT--A-AGGCGCCACAA--AT-AAAG-CGGTGGTTAT---AAATA---TTGACAA-TTGA--GGA-GT---TGAAATGA---TTA-A--TAGCAT-TCA---ACTTC---GGT----------TTAA---ATTATATTT---------ACAAGAT--AGTCTCTCTTTCGCTCT-----ANCGTAAATGA---T-T--ATT-GCATTTTTTCTAAAAC--------TTTGTAGATAC----GGNAA-AATCGTAGC-----TAAGTT-------ACATCC-----ATTAGCACATANATCAAAATATGTTTTACTGCAGGGTGTTATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGNACAGGTCATGCAATATANTAGATCNTGTAGATTTGCACGACATATTGTTCGANTGGTGAAAGTTTTGCCACATTTAAACGTGAAAGCATCTCCNNTTTTTGNATAAGGGCAGNTAACCGCANCGNGGATCCNCGCATCTGGAAACTGCA-GT-TTTTCTTCTTA-TCGGTTGNAAATTTGGCTCTNGTCAG-TANTTTCTTCAGATTTAGGAGGTTAANGTCGACTGTAGAT-AATGTTCTTCAAT--TCAATGANAT-TCCTTAGAT-TTTCGGATTGT-TATA-AATCGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTAC-GGGATTGTGAGTTACG-ACG--AGGTGGATTTG-TTTTCTGATTTCATCCTGAGTTCCCGATTTTCTGGAGTTCCGAAGTTCTGAGATTGGTATA-G-A-TCTATGCCTTCTCTATAGCGATATATATTAAATTTTCCGGATAT-TTCTGTCTAAGTAAAGAGGAAACTATGTTGTTAATTTCTGTATGACGTTTATTCNCTTCTGTTTTCA------TC-A-ACG----ACGATAGTGCAAACACGTCTCGCCTTGTTAAACGGTATGTTGCGTTTAGCATGTGNCGGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATNTTCATGTGGNNTGGACCAAAANATGAAACAATCGTCTAAANATGCGCTTCCAGTTAGACNTTATGTATTGCGCAANTTGNTTTCCATAATAACCTGTCTGTGTTTCGAAATAATTTCTCCTCTNGGAATCCCAGTACTNGGNTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAANANGTGTTATGTTGTCGAACATANAATAGTTGTTNTCNAGTACTAATTNTAATCCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCGTAACACGAATGTTCACCTACTA--GTCCGTTCTTNATTTCTTTGGGCTTGTTAATCTTT
gi|1 : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-CGCCTT--GT-C-GGC--TC---TT---CAAAGA------GTGTAATGATTT-CA----A-A-T-A----CAC--A-GTCT-TTGTTA----TGACAA-TGTAA--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGC--AT---AA-AAA-T-TG-GCG-CAAG-TTAAA-GTCAAT--A-AGGCGCCATAA--AT-AAAG-CAATGGATAT---AAATA---T-GACAA-TTGA--GGA-GT-----AAATGA---TTA-AAATAGCAT-TCA---ACTTC---GTT----------TTAA---ATAAT-TTT---------ACAAAAT--AGTCT-TCTTTCGCTCT------CCGTAAATGT---T-C--ATT-G-----TTTCTAAAAC--------TTTGTAGAAAC----GGAAA-AATTAAA--------AAGTT----------TCC-----ATTAGCACATAAATCAAA---TGTTT-ACTGCAGGGTGT-ATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGTACAAATCATGCAATATATTAAATCATG--GATTTACATGACATATTGTTCGAATGGTGAAAGTTTTGCCACATTTAAACGTGAAAGTATCTCCTGTTTTTAAATAAGGGCAGGTA-CTGCAACGGGGATCCATACATTTGGAAACTGTA-GT-TTTTCCTTTTA-TTGGTTGAAAATTTGGCTCTGGTCAG-TAGTTTCTTTAGATT-AGGAGGTTGAAGTCGACTGTAGAT-AATGTTCTTCATT--TCAATGATGC-TCCTTAGAT-TTTCGGATTGT-TATA-AATAGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTAC-CGGATTGTGAGTTACG-ACG--AGGTGGATTTG-ATTTCTGATTCCATCCTGAGTTCCCGA-TTTCTGAAGTTCCGAAGTTCTGAGATTGGTATA-GAA-TCTA-GCCTTCTCTATAGCGATATATATTAAATTTGTCGGATAT-TTGTGTCTAAGTAAAAA-------ATGTTGTTAATTCCTGTA-GACGTTTATTCTCTTCTGTTTTCA------TCAA-ACG----ACGATGGTACAAACACGTCTCGCCATGTTAAACGGTATGTTGCGTTTA-CATGTGA-GGGATGACAAGAATTGAATAT-CAGGTACTGGTGTGAGT-CCGTTT--TCTTGTAGTATAAATCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATATT-ATGTGATTTGGACCAAAAAATGAAACAATCGTCTAAATATGCGCTTCCAGTTAGATTTTATGTATTGCGCAACTTGATTTTCA-AATAATCTGTCTGTGTTTTCAAATAATTT-TCCTCTAGGAATCCTAGTACTAGGGTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAATAAGTGTT-TGTTGTCGAACATAGAATAGTTGTTCTCTAGTACTAATTTTAATCCCTCT
gi|1 : AATTGGTCTTAGCTTTAAATCTGATGGTTGTGGTAATTTGGCGTAACACGAGTTTTCACTTATTA--ATCTGTTCTGGATCTCTTTGGATTTGTGAATCTTTaagatgtctttggaaaatctaggattaatttcgctttggtgtttatcgatccagaatgcaattgcttctgtatgtggtatgttgtatacagagagtgacatcaaaaagccatttttggtatcaacctcaacttgttctggggatatggctgaggaaattctaaaatcgttaagaagtatgtctaataaattgctgagtatgtgggtggaacaagcaggtccggctacaattggtcttagctttaaatctgatggttgtggtaatttggcgtaacacgagttttcacttattaatctgttctggatctctttggatttgtgaatcttt
gi|11 : gaaataattatctacatttatcacacttagcgctttcgccttgtcggctcttcaaagagtgtaatgatttcaaatacacagtctttgttatgacaatgtaattaagacgtcgttattgtgacgtcataaaggcagcataaaaattggcgcaagttaaagtcaataaggcgccataaataaagcaatggatataaatatgacaattgaggagtaaatgattaaaatagcattcaacttcgttttaaataattttacaaaatagtcttctttcgctctccgtaaatgttcattgtttctaaaactttgtagaaacggaaaaattaaaaagtttccattagcacataaatcaaatgtttactgcagggtgtattcctgacggatgggtcccgtgtcggttgctgtggactctcacacggtcagctaacttagttcggtctgtcctatgtaattttctccgcaggagtacaaatcatgcaatatattaaatcatggatttacatgacatattgttcgaatggtgaaagttttgccacatttaaacgtgaaagtatctcctgtttttaaataagggcaggtactgcaacggggatccatacatttggaaactgtagtttttccttttattggttgaaaatttggctctggtcagtagtttctttagattaggaggttgaagtcgactgtagataatgttcttcatttcaatgatgctccttagattttcggattgttataaataggaaagcattgtttaacagaattatacatattaatattaccggattgtgagttacgacgaggtggatttgatttctgattccatcctgagttcccgatttctgaagttccgaagttctgagattggtatagaatctagccttctctatagcgatatatattaaatttgtcggatatttgtgtctaagtaaaaaatgttgttaattcctgtagacgtttattctcttctgttttcatcaaacgacgatggtacaaacacgtctcgccatgttaaacggtatgttgcgtttacatgtgagggatgacaagaattgaatatcaggtactggtgtgagtccgttttcttgtagtataaatccgttgtaattttcctgttcttcttttttacgaggatatccaaaaaaagtagttctgtgctgcttgtttccaccgtaaattgaatcgagggatgtaaactgttcaaacacattatgaaagctctctaatattatgtgatttggaccaaaaaatgaaacaatcgtctaaatatgcgcttccagttagattttatgtattgcgcaacttgattttcaaataatctgtctgtgttttcaaataattttcctctaggaatcctagtactagggtagcatatgtggggcgactagtagtacccatggctgttccttttatttgtaataagtgtttgttgtcgaacatagaatagttgttctctagtactaattttaatccctctaagatgtctttggaaaatctaggattaatttcgctttggtgtttatcgatccagaatgcaattgcttctgtatgtggtatgttgtatacagagagtgacatcaaaaagccatttttggtatcaacctcaacttgttctggggatatggctgaggaaattctaaaatcgttaagaagtatgtctaataaattgctgagtatgtgggtggaacaagcaggtccggctacGATATTATTATCTACATT--TA-T-C-ACAG-ATC-G---C-GCT-TT-TGCATT--GT-C-GGC--TC---TT---C-A-GG------GTGTAACATTTT-CA----A-A-
gi|13 : gagacggggtnnnnnnnnnnnnnnnnnnnnnnnnnagagagagagagagagagagagaggacgggactctaaagatggctgTAGCTACATT--TC-T-TTACAC-TTAAG---C-GCT-T--CGCCTT--GA-C-GGC--GC---TT---C-A-TA------GTGTAACAATTT-CA----A-A-T-G----CACTGA-GTATATTGTTA----TGAC-A-TGTAG--TTAA--GA
gi|14 : AATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCATACAACGAATGTTCACCTACTA--GTCCGTTCTTTATTTCTTTGGGCTTGTTAATCTTTtt
gi|15 : AATTAGCCTTAGTTT-AAATCTGATGGTTGTAGTAATATGGCATAACAAGAATGTTCAACCACTAGGGTCCGTTCTTATTTTCTTT-GGCTTGTTAATCTTT
gi|2 : GAAATA-TTATCTA-ATTC-TA-T-C-ACACATTA-AAGAC-GCT-TTTCGCCTCTAGTAC-GACCGTCATATTACCCGA-GATATCATACGTAATGATATACA----A-AAT-AGCAACA---A-GTCT-TTAGTAGTACTGACGAGTGTAG--T-AA--GACGTCAAGTATTTT--TGCTGAC-GCTCTTTTAT--A--AAGG---CAGCATATTTAAA-TAA-TATGTGCG-CAAGTTTAAA-GCTCAT--ACCGGCGCC-CAATTATAAAAA-CGGTAG-TATCTAAAATA---TTGACA---TGATCTGA-GTCTGTGAAATGACGTTTACA--TAGCAT-TCAGGTACTTCGGAGGTATTCCCATTATTAACACATTATATTTCTCTCTTAAACAA-ATCGAGTATCCTTTTCGCTCTCCAGCAGTATACATGATTCT-T--ATTCGCTCTTTCTCTACAACTTAAGGAATTTTTTGGTATCCAGGATAA-AATCATAACTATTATAAGTTTTCTCTGACATACTTTTTAATGACAAATACATCAAAATATGTTTTACTGCAGGGTGTTATT
gi|22 : tAGTATGTGTTG--ATGGCAAGATTTAAA-AGCCAAATACTGATGTGTTATCCG-TCTTCCTTGCAAAATATGTt
gi|23 : ATTATC---ATT--TA-T-T-CCAG---A-G---C-GCT-TT-CGCCCT--A--C-GGC--TC---TT---TGA-CA-------TG---GGATTT-CT----A-A-TAA----CA---A-aattgaactttt
gi|3 : gaagatttcacAATAATTATTTACATTGTTAGTGC-ACAC-TTA-G---CAGCTGTT-TGCAAT--GT-TAGGCCGTC---TT---CAG-AA------GT-TAATGTTTT-CATCCGACA-T-A----CA---AAGTCT-TTGATT----TG-CAG-TGTAGGTTTAA--GACATCG----TTATATTG-TGACAG-----TCATGTA--AAGCTCTCAGCGTAT---AC-TAAAT-TG-GCGTCAAG-TTAAA-GTCCAT--A-AGCTCCCACAA--GC-TAAG-TGGTATTTGT---TAGTACAATTGACAACTTGT--GGATGT---TAAAGTGA---TTA-A--TAGCATCTCA---ACTTG---GGT----------TTAA---ATTATATTT---------ACAAGAT----TCTCTCTTTCGTTCT-----ATTGTAAATGA---TATAAATT-GTATTTTTTCTAATAC--------TTTGTAAATAC----GGCAATAATCGTAGT-----TAGGTT-------ACATCC-----ATTAGCACATATAcaaat
gi|4 : gagatcgagattgactactctggcgatgatagtaggggaaagactgagagagagacggagagaggacggaataaatccatacgatagatttgactcgTGGAAACTGCATGTATTTTTTTCTTAATCAGATGGAAATTTGGCTCTTGTCAG-TATTATTTTCAGGTTTAGGAGCTTAACGTCGACTGTAGAT-AACGGTCTTTAGT--TCAATGACAT-CTCTTAGAT-GTTGGGATTGT-TGTACAATTGAAAAACAATTTTTAACATAATGA-TGTATATTA-ATATTACGGGGATTGTGAGTTACG-ACG--AGGTTGATTTA-TTTTCTGATTTCATCCTGGGTTCCCAATTTTCTGGAGTTCTGAAGTTCTGCGAT--------------TATG---------TAGC---ATATATT---TTTTCCGGATAT-TTCTGT
gi|4 : ATTTCTGTATG---TCTAATTACTCCTGTTTTAA------TC-A-TCG----ACGATACTGCAAACACGTCTCGCCTTGTTAAACGGTATGCTGCGTTTAACATGTGAGGGGatgtctaattactcctgttttaatcatcgacgatactgcaaacacgtctcgccttgttaaacggtatgctgcgtttaacatgtgagggg
gi|5 : tggaaactgcatgtatttttttcttaatcagatggaaatttggctcttgtcagtattattttcaggtttaggagcttaacgtcgactgtagataacggtctttagttcaatgacatctcttagatgttgggattgttgtacaattgaaaaacaatttttaacataatgatgtatattaatattacggggattgtgagttacgacgaggttgatttattttctgatttcatcctgggttcccaattttctggagttctgaagttctgcgattatgtagcatatattttttccggatACGTCGACTGTAAATTAATGTTCTTCAATCTTCAATGA-ATGTCCTTAGAT-TTTCGGA-TGTGTAAA-AATCGGAAAGCATTG-TTAACAGAATTATTACA-ATTACATATTAC-GGGATTGTGAGTTACGAACGGAAGGGGCATTTGTTTTTCTGATTTCATCCTGAGTTTCCGATTTTCT-GAGTTCCGAAGTTCTGAGATTGGTATACG-ACTCTATGCCTTTTCTATAGCGATATCT-TTAAATTTTC--GATATCTTCTGTCTAAGTAAAGAGGAAACTATGTTGT
gi|6 : ATT--TA-T-T-CCAG---A-G---C-GCT-TTCCGCCCT--A--C-GGC--TC---TT---C----A------GTGGA---ATTT-CA----A-A---A---------------------A----TAACAA-TATCA--TAAATTGACGTCG----CTAT--TA-TGAC-G-----TCAT--AGTAAGA---CAACGT-T---AATTTT-T-TG-GCG-CAA---TAAATGTTAATGAA-ATGCACCA-AA--AT-AATGCCTGTGGCTCT---AAATaa
gi|7 : atatataataattgagttgaagatttcacattAGGACAGGTCATACAATATAGTAGATTTTGTAGATTTGCAC---------TTC-ATTGGTGAA--TTT----ACA-TTAAATTT-----CAT-TCCGTTTTTTGTAT-----TAGTTAACCGCATCGTGGATTCTCGCATCTGAAAA-------------CTTCTTG-T---TTGTGAATTTAGTTTTAGTGAGAAATTTTCTTCAAATTT-TGTGGTTAAAGTCTACTGTGGAG-TATATTCGTGGAC--TGGATGAGAT-TCTTTA-ATGTTTCTGACTGtataattttcaaacattttttttaaggaagaaattaaaaat
gi|8 : tAATCTTCATGTGGAATGGACCAAAACATAAAACAATCGTCTAAAAAT-CGCTTCCAATTAGACATTATGTATTGCGCAAATTATTTTCCATAATAACTTGTCTGTGTTTCGAAATAATTTCTCTTTTCGAAATCCCAATATTTGGTTAGCATATAT
gi|8 : TATTTGTAAGACGTGTTATAT-GTTAAACATACAATAGTTAT-ATCGAGTACTAATTGTAATCTCTCTttgtaagacgtgttatatgttaaacatacaatagttatatcgagtactaattgtaatctctcttat
gi|9 : aatcttcatgtggaatggaccaaaacataaaacaatcgtctaaaaatcgcttccaattagacattatgtattgcgcaaattattttccataataacttgtctgtgtttcgaaataatttctcttttcgaaatcccaatatttggttagcataTTTTTATATGATGTTTTTCCCCTTCT----TCAATATACTC-ACACGTTCCACTATAGAGCATATCCGTCTGGCTTAGTTGAATGGTATGTTACGCT--GTATGTGCCCGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCTGTtat
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CATTTAATCCAGATAGCGTTCCCCTACGGCGATGCAGTGCATTTGCGAATAATAGCAATCTCATAAATAGACGTATATATTATGGCGTCATAGTAAGTCAAAGTTAATTTTATTTAGCAATGTATGGCAATGAAATGCACCAAAATAATAAAACAT
Unaligned ( gi|12 ): TAATTGAAGTTGAACGTATATATCCCATCATTTCATTCCAGCAGCGCTTTTCGGCCCTACGGCTCTCTTTCAGTCGTGAATTTCACAATCAATAACAATATTACTATCACTACTATACTATATTAATATAATAATCGTTACTT
Unaligned ( gi|16 ): TTGAGTAGAAGATTTCGCATCATTTTATTCCAGAGCACTTTCGCCCTACGGTTTTTACTGGAATTTCAAATAACAATATCATAAATCGACCTCAC
Unaligned ( gi|17 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|18 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|19 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|20 ): ATATATATATATAAGAACAGGTATTTAAAGTAGGGTATTTCACATTTAATTTCTTCCGAAGCGCTATCGCGCTACACGGCTCATCAGTGGA
Unaligned ( gi|21 ): TATATAAATACATATATAGAAAAATTGAGTTGAAGATTTCACATTATTTATTCCAGAGCGCTTTCGCCCTAGCGCTCTGGAATAAAATAA
Unaligned ( gi|24 ): ACCATATTGAAATAACGTTGCAATTTAATGATGTCATAGTAGCAGACGTCCGTCGATTTTTGGCGCAATAGATTT
Unaligned ( gi|25 ): ATATATATATATATTCAAATGAAAAAAACTGAGTTGAAGATTTCACATTATCTATTCCAGAGCGCTT
Unaligned ( gi|26 ): TATGTCTATAGTTATATGTAGAAAATATTGAGTTGAAGATTTCACATTATTTATT
Unaligned ( gi|27 ): AAAAAATTGAGTTGAAGATTTTCACATTATTTTATTCCAGAGCGCT
Alignments
lowQualScore : 11 1111111111 1 11111 11 111 333333333333333 1111 333333333333333 1111 11 11 2222 11 1 1 22222 11111 1111 111111111111 1 1 11 1 1111 11 1 1 1 111 222 22 11 1 33333 222 2222 1 222 6666666666666666 222 555555555 1 222 44444444 6666666666666666 44444444 2222 1 6666666666666666666666666666666 222 1 1 11 333333333 1 11 2222 1 22222 1 22222 1 333333333 2222 1 11 1 11 1 1 1 1 1 1 1 1 1 11 1 333333333333 1 3333333 11 444444444444444444 111 11 1 1 1 11 1 1 1 1 1 1 11 11
lowQualScore : 0 2 33 5 888 5555555555 5 5 1 66666 5 55 000 333333333333333 1 55 5 2222 5 222222222222222 8 3 7777 0 3 8 11 6 11 1111 33 0 0 55555 88888 7777 666 999999999999 0 0 22 0 1 4444 0 99 33 0 0 0 0 0 777 333 7 00 88 3 44444 333 2222 3 333 1111111111111111 333 7 333333333 2 555 6 22222222 0000000000000000 88888888 8888 1 3 0 7777777777777777777777777777777 1 111 5 5 1 1 1 88 888888888 5 1 88 3333 5 2 66666 5 22 1 66666 1 5 1 1 1 000000000 0000 1 1 3 44 1 0 0 1 33 0 0 2 0 7 3 3 3 7 3 7 3 3 3 88 3 7 6 777777777777 7 6 3 6 7 7 6 3 2222222 7 11 1 6 555555555555555555 000 33 2 3 6 3 3 88 1 5 22 1 1 5 1 1 1 5 2 5 1 1 1 1 1 5 5 1 66 1 1 7 0 88 1 6
lowQualScore : . . .. . ... .......... . . . ..... . .. ... ............... . .. . .... . ............... . . .... . . . .. . .. .... .. . . ..... ..... .... ... ............ . . .. . . .... . .. .. . . . . . ... ... . .. .. . ..... ... .... . ... ................ ... . ......... . ... . ........ ................ ........ .... . . . ............................... . ... . . . . . .. ......... . . .. .... . . ..... . .. . ..... . . . . . ......... .... . . . .. . . . . .. . . . . . . . . . . . . . . .. . . . ............ . . . . . . . . ....... . .. . . .................. ... .. . . . . . .. . . .. . . . . . . . . . . . . . . . . . .. . . . . .. . .
lowQualScore : 8 5 66 7 333 4444444444 7 7 4 99999 7 77 000 111111111111111 4 44 7 1111 7 555555555555555 0 8 0000 8 8 0 00 0 00 2222 88 0 0 00000 55555 8888 888 000000000000 0 0 55 0 0 8888 2 88 88 0 0 2 8 8 555 333 3 77 33 3 33333 333 7777 3 333 0000000000000000 333 3 333333333 0 777 7 33333333 7777777777777777 33333333 3333 0 3 7 7777777777777777777777777777777 0 555 5 5 0 0 0 55 000000000 0 0 00 0000 5 5 55555 0 00 0 00000 0 5 0 0 0 777777777 0000 0 0 3 77 0 0 2 2 88 8 0 5 0 0 3 3 7 3 3 3 3 3 3 33 3 3 7 333333333333 3 7 7 7 3 3 7 3 0000000 3 00 0 7 000000000000000000 888 88 5 3 7 3 3 33 0 0 00 0 0 0 0 0 0 5 5 0 0 0 0 0 0 5 5 0 55 0 0 3 7 33 0 7
consensus : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-CGCCTT--GT-C-GGC--TC---TT---CGA-GA------GTGTAACGATTT-CA----A-A-T-A----CA---A-GTCT-TTGNTA----TGACAA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGCGTAT---AA-TAA-T-TG-GCG-CAAG-TTAAA-GTCNAT--A-AGGCGCCACAA--AT-AAAG-CGGTGGNTAT---AAATA---TTGACAA-TTGA--GGA-GT---TGAAATGA---TTA-A--TAGCAT-TCA---ACTTC---GGT----------TTAA---ATTATATTT---------ACAAGAT--AGTCTCTCTTTCGCTCT-----ANCGTAAATGA---T-T--ATT-GC-CTTTTTCTAAAAC--------TTTGTAGATAC----GGNAA-AATCGTAGC-----TAAGTT-------ACATCC-----ATTAGCACATANATCAAAATATGTTTTACTGCAGGGTGTTATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGNACAGGTCATGCAATATANTAGATCNTGTAGATTTGCACGACATATTGTTCGANTGGTGAAAGTTTTGCCACATTTAAACGTGAAAGCATCTCCNNTTTTTGNATAAGGGCAGNTAACCGCANCGNGGATCCNCGCATCTGGAAACTGCA-GT-TTTTCTTCTTA-TCGGTTGNAAATTTGGCTCTNGTCAG-TATTTTCTTCAGATTTAGGAGGTTAANGTCGACTGTAGAT-AATGTTCTTCAAT--TCAATGANAT-TCCTTAGAT-TTTCGGATTGT-TATA-AATCGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTAC-GGGATTGTGAGTTACG-ACG--AGGTGGATTTG-TTTTCTGATTTCATCCTGAGTTCCCGATTTTCTGGAGTTCCGAAGTTCTGAGATTGGTATA-G-A-TCTATGCCTTCTCTATAGCGATATATATTAAATTTTCCGGATAT-TTCTGTCTAAGTAAAGAGGAAACTATGTTGTTAATTTCTGTATGACGTTTATTCNCTTCTGTTTTCA------TC-A-ACG----ACGATAGTGCAAACACGTCTCGCCTTGTTAAACGGTATGTTGCGTTTAGCATGTGNCGGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATNTTCATGTGGNNTGGACCAAAANATGAAACAATCGTCTAAANATGCGCTTCCAGTTAGACNTTATGTATTGCGCAANTTGNTTTCCATAATAACCTGTCTGTGTTTCGAAATAATTTCTCCTCTNGGAATCCCAGTACTNGGNTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAANANGTGTTATGTTGTCGAACATANAATAGTTGTTNTCNAGTACTAATTNTAATCCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCGTAACACGAATGTTCACCTACTA--GTCCGTTCTTNATTTCTTTGGGCTTGTTAATCTTT
Reference ( family-437 ) : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-CGCCTT--GT-C-GGC--TC---TT---CGA-GA------GTGTAACGATTT-CA----A-A-T-A----CA---A-GTCT-TTGNTA----TGACAA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGCGTAT---AA-TAA-T-TG-GCG-CAAG-TTAAA-GTCNAT--A-AGGCGCCACAA--AT-AAAG-CGGTGGNTAT---AAATA---TTGACAA-TTGA--GGA-GT---TGAAATGA---TTA-A--TAGCAT-TCA---ACTTC---GGT----------TTAA---ATTATATTT---------ACAAGAT--AGTCTCTCTTTCGCTCT-----ANCGTAAATGA---T-T--ATT-GC-CTTTTTCTAAAAC--------TTTGTAGATAC----GGNAA-AATCGTAGC-----TAAGTT-------ACATCC-----ATTAGCACATANATCAAAATATGTTTTACTGCAGGGTGTTATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGNACAGGTCATGCAATATANTAGATCNTGTAGATTTGCACGACATATTGTTCGANTGGTGAAAGTTTTGCCACATTTAAACGTGAAAGCATCTCCNNTTTTTGNATAAGGGCAGNTAACCGCANCGNGGATCCNCGCATCTGGAAACTGCA-GT-TTTTCTTCTTA-TCGGTTGNAAATTTGGCTCTNGTCAG-TATTTTCTTCAGATTTAGGAGGTTAANGTCGACTGTAGAT-AATGTTCTTCAAT--TCAATGANAT-TCCTTAGAT-TTTCGGATTGT-TATA-AATCGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTAC-GGGATTGTGAGTTACG-ACG--AGGTGGATTTG-TTTTCTGATTTCATCCTGAGTTCCCGATTTTCTGGAGTTCCGAAGTTCTGAGATTGGTATA-G-A-TCTATGCCTTCTCTATAGCGATATATATTAAATTTTCCGGATAT-TTCTGTCTAAGTAAAGAGGAAACTATGTTGTTAATTTCTGTATGACGTTTATTCNCTTCTGTTTTCA------TC-A-ACG----ACGATAGTGCAAACACGTCTCGCCTTGTTAAACGGTATGTTGCGTTTAGCATGTGNCGGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATNTTCATGTGGNNTGGACCAAAANATGAAACAATCGTCTAAANATGCGCTTCCAGTTAGACNTTATGTATTGCGCAANTTGNTTTCCATAATAACCTGTCTGTGTTTCGAAATAATTTCTCCTCTNGGAATCCCAGTACTNGGNTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAANANGTGTTATGTTGTCGAACATANAATAGTTGTTNTCNAGTACTAATTNTAATCCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCGTAACACGAATGTTCACCTACTA--GTCCGTTCTTNATTTCTTTGGGCTTGTTAATCTTT
gi|1 : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-CGCCTT--GT-C-GGC--TC---TT---CAAAGA------GTGTAATGATTT-CA----A-A-T-A----CAC--A-GTCT-TTGTTA----TGACAA-TGTAA--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGC--AT---AA-AAA-T-TG-GCG-CAAG-TTAAA-GTCAAT--A-AGGCGCCATAA--AT-AAAG-CAATGGATAT---AAATA---T-GACAA-TTGA--GGA-GT-----AAATGA---TTA-AAATAGCAT-TCA---ACTTC---GTT----------TTAA---ATAAT-TTT---------ACAAAAT--AGTCT-TCTTTCGCTCT------CCGTAAATGT---T-C--ATT-G-----TTTCTAAAAC--------TTTGTAGAAAC----GGAAA-AATTAAA--------AAGTT----------TCC-----ATTAGCACATAAATCAAA---TGTTT-ACTGCAGGGTGT-ATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGTACAAATCATGCAATATATTAAATCATG--GATTTACATGACATATTGTTCGAATGGTGAAAGTTTTGCCACATTTAAACGTGAAAGTATCTCCTGTTTTTAAATAAGGGCAGGTA-CTGCAACGGGGATCCATACATTTGGAAACTGTA-GT-TTTTCCTTTTA-TTGGTTGAAAATTTGGCTCTGGTCAG-TAGTTTCTTTAGATT-AGGAGGTTGAAGTCGACTGTAGAT-AATGTTCTTCATT--TCAATGATGC-TCCTTAGAT-TTTCGGATTGT-TATA-AATAGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTAC-CGGATTGTGAGTTACG-ACG--AGGTGGATTTG-ATTTCTGATTCCATCCTGAGTTCCCGA-TTTCTGAAGTTCCGAAGTTCTGAGATTGGTATA-GAA-TCTA-GCCTTCTCTATAGCGATATATATTAAATTTGTCGGATAT-TTGTGTCTAAGTAAAAA-------ATGTTGTTAATTCCTGTA-GACGTTTATTCTCTTCTGTTTTCA------TCAA-ACG----ACGATGGTACAAACACGTCTCGCCATGTTAAACGGTATGTTGCGTTTA-CATGTGA-GGGATGACAAGAATTGAATAT-CAGGTACTGGTGTGAGT-CCGTTT--TCTTGTAGTATAAATCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATATT-ATGTGATTTGGACCAAAAAATGAAACAATCGTCTAAATATGCGCTTCCAGTTAGATTTTATGTATTGCGCAACTTGATTTTCA-AATAATCTGTCTGTGTTTTCAAATAATTT-TCCTCTAGGAATCCTAGTACTAGGGTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAATAAGTGTT-TGTTGTCGAACATAGAATAGTTGTTCTCTAGTACTAATTTTAATCCCTCT
gi|1 : AATTGGTCTTAGCTTTAAATCTGATGGTTGTGGTAATTTGGCGTAACACGAGTTTTCACTTATTA--ATCTGTTCTGGATCTCTTTGGATTTGTGAATCTTTaagatgtctttggaaaatctaggattaatttcgctttggtgtttatcgatccagaatgcaattgcttctgtatgtggtatgttgtatacagagagtgacatcaaaaagccatttttggtatcaacctcaacttgttctggggatatggctgaggaaattctaaaatcgttaagaagtatgtctaataaattgctgagtatgtgggtggaacaagcaggtccggctacaattggtcttagctttaaatctgatggttgtggtaatttggcgtaacacgagttttcacttattaatctgttctggatctctttggatttgtgaatcttt
gi|11 : gaaataattatctacatttatcacacttagcgctttcgccttgtcggctcttcaaagagtgtaatgatttcaaatacacagtctttgttatgacaatgtaattaagacgtcgttattgtgacgtcataaaggcagcataaaaattggcgcaagttaaagtcaataaggcgccataaataaagcaatggatataaatatgacaattgaggagtaaatgattaaaatagcattcaacttcgttttaaataattttacaaaatagtcttctttcgctctccgtaaatgttcattgtttctaaaactttgtagaaacggaaaaattaaaaagtttccattagcacataaatcaaatgtttactgcagggtgtattcctgacggatgggtcccgtgtcggttgctgtggactctcacacggtcagctaacttagttcggtctgtcctatgtaattttctccgcaggagtacaaatcatgcaatatattaaatcatggatttacatgacatattgttcgaatggtgaaagttttgccacatttaaacgtgaaagtatctcctgtttttaaataagggcaggtactgcaacggggatccatacatttggaaactgtagtttttccttttattggttgaaaatttggctctggtcagtagtttctttagattaggaggttgaagtcgactgtagataatgttcttcatttcaatgatgctccttagattttcggattgttataaataggaaagcattgtttaacagaattatacatattaatattaccggattgtgagttacgacgaggtggatttgatttctgattccatcctgagttcccgatttctgaagttccgaagttctgagattggtatagaatctagccttctctatagcgatatatattaaatttgtcggatatttgtgtctaagtaaaaaatgttgttaattcctgtagacgtttattctcttctgttttcatcaaacgacgatggtacaaacacgtctcgccatgttaaacggtatgttgcgtttacatgtgagggatgacaagaattgaatatcaggtactggtgtgagtccgttttcttgtagtataaatccgttgtaattttcctgttcttcttttttacgaggatatccaaaaaaagtagttctgtgctgcttgtttccaccgtaaattgaatcgagggatgtaaactgttcaaacacattatgaaagctctctaatattatgtgatttggaccaaaaaatgaaacaatcgtctaaatatgcgcttccagttagattttatgtattgcgcaacttgattttcaaataatctgtctgtgttttcaaataattttcctctaggaatcctagtactagggtagcatatgtggggcgactagtagtacccatggctgttccttttatttgtaataagtgtttgttgtcgaacatagaatagttgttctctagtactaattttaatccctctaagatgtctttggaaaatctaggattaatttcgctttggtgtttatcgatccagaatgcaattgcttctgtatgtggtatgttgtatacagagagtgacatcaaaaagccatttttggtatcaacctcaacttgttctggggatatggctgaggaaattctaaaatcgttaagaagtatgtctaataaattgctgagtatgtgggtggaacaagcaggtccggctacGATATTATTATCTACATT--TA-T-C-ACAG-ATC-G---C-GCT-TT-TGCATT--GT-C-GGC--TC---TT---C-A-GG------GTGTAACATTTT-CA----A-A-
gi|13 : gagacggggtnnnnnnnnnnnnnnnnnnnnnnnnnagagagagagagagagagagagaggacgggactctaaagatggctgTAGCTACATT--TC-T-TTACAC-TTAAG---C-GCT-T--CGCCTT--GA-C-GGC--GC---TT---C-A-TA------GTGTAACAATTT-CA----A-A-T-G----CACTGA-GTATATTGTTA----TGAC-A-TGTAG--TTAA--GA
gi|14 : AATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCATACAACGAATGTTCACCTACTA--GTCCGTTCTTTATTTCTTTGGGCTTGTTAATCTTTtt
gi|15 : AATTAGCCTTAGTTT-AAATCTGATGGTTGTAGTAATATGGCATAACAAGAATGTTCAACCACTAGGGTCCGTTCTTATTTTCTTT-GGCTTGTTAATCTTT
gi|2 : GAAATA-TTATCTA-ATTC-TA-T-C-ACACATTA-AAGAC-GCT-TTTCGCCTCTAGTAC-GACCGTCATATTACCCGA-GATATCATACGTAATGATATACA----A-AAT-AGCAACA---A-GTCT-TTAGTAGTACTGACGAGTGTAG--T-AA--GACGTCAAGTATTTT--TGCTGAC-GCTCTTTTAT--A--AAGG---CAGCATATTTAAA-TAA-TATGTGCG-CAAGTTTAAA-GCTCAT--ACCGGCGCC-CAATTATAAAAA-CGGTAG-TATCTAAAATA---TTGACA---TGATCTGA-GTCTGTGAAATGACGTTTACA--TAGCAT-TCAGGTACTTCGGAGGTATTCCCATTATTAACACATTATATTTCTCTCTTAAACAA-ATCGAGTATCCTTTTCGCTCTCCAGCAGTATACATGATTCT-T--ATTCGCTCTTTCTCTACAACTTAAGGAATTTTTTGGTATCCAGGATAA-AATCATAACTATTATAAGTTTTCTCTGACATACTTTTTAATGACAAATACATCAAAATATGTTTTACTGCAGGGTGTTATT
gi|22 : tAGTATGTGTTG--ATGGCAAGATTTAAA-AGCCAAATACTGATGTGTTATCCG-TCTTCCTTGCAAAATATGTt
gi|23 : ATTATC---ATT--TA-T-T-CCAG---A-G---C-GCT-TT-CGCCCT--A--C-GGC--TC---TT---TGA-CA-------TG---GGATTT-CT----A-A-TAA----CA---A-aattgaactttt
gi|3 : gaagatttcacAATAATTATTTACATTGTTAGTGC-ACAC-TTA-G---CAGCTGTT-TGCAAT--GT-TAGGCCGTC---TT---CAG-AA------GT-TAATGTTTT-CATCCGACA-T-A----CA---AAGTCT-TTGATT----TG-CAG-TGTAGGTTTAA--GACATCG----TTATATTG-TGACAG-----TCATGTA--AAGCTCTCAGCGTAT---AC-TAAAT-TG-GCGTCAAG-TTAAA-GTCCAT--A-AGCTCCCACAA--GC-TAAG-TGGTATTTGT---TAGTACAATTGACAACTTGT--GGATGT---TAAAGTGA---TTA-A--TAGCATCTCA---ACTTG---GGT----------TTAA---ATTATATTT---------ACAAGAT----TCTCTCTTTCGTTCT-----ATTGTAAATGA---TATAAATT-GTATTTTTTCTAATAC--------TTTGTAAATAC----GGCAATAATCGTAGT-----TAGGTT-------ACATCC-----ATTAGCACATATAcaaat
gi|4 : gagatcgagattgactactctggcgatgatagtaggggaaagactgagagagagacggagagaggacggaataaatccatacgatagatttgactcgTGGAAACTGCATGTATTTTTTTCTTAATCAGATGGAAATTTGGCTCTTGTCAG-TATTATTTTCAGGTTTAGGAGCTTAACGTCGACTGTAGAT-AACGGTCTTTAGT--TCAATGACAT-CTCTTAGAT-GTTGGGATTGT-TGTACAATTGAAAAACAATTTTTAACATAATGA-TGTATATTA-ATATTACGGGGATTGTGAGTTACG-ACG--AGGTTGATTTA-TTTTCTGATTTCATCCTGGGTTCCCAATTTTCTGGAGTTCTGAAGTTCTGCGAT--------------TATG---------TAGC---ATATATT---TTTTCCGGATAT-TTCTGT
gi|4 : ATTTCTGTATG---TCTAATTACTCCTGTTTTAA------TC-A-TCG----ACGATACTGCAAACACGTCTCGCCTTGTTAAACGGTATGCTGCGTTTAACATGTGAGGGGatgtctaattactcctgttttaatcatcgacgatactgcaaacacgtctcgccttgttaaacggtatgctgcgtttaacatgtgagggg
gi|5 : tggaaactgcatgtatttttttcttaatcagatggaaatttggctcttgtcagtattattttcaggtttaggagcttaacgtcgactgtagataacggtctttagttcaatgacatctcttagatgttgggattgttgtacaattgaaaaacaatttttaacataatgatgtatattaatattacggggattgtgagttacgacgaggttgatttattttctgatttcatcctgggttcccaattttctggagttctgaagttctgcgattatgtagcatatattttttccggatACGTCGACTGTAAATTAATGTTCTTCAATCTTCAATGA-ATGTCCTTAGAT-TTTCGGA-TGTGTAAA-AATCGGAAAGCATTG-TTAACAGAATTATTACA-ATTACATATTAC-GGGATTGTGAGTTACGAACGGAAGGGGCATTTGTTTTTCTGATTTCATCCTGAGTTTCCGATTTTCT-GAGTTCCGAAGTTCTGAGATTGGTATACG-ACTCTATGCCTTTTCTATAGCGATATCT-TTAAATTTTC--GATATCTTCTGTCTAAGTAAAGAGGAAACTATGTTGT
gi|6 : ATT--TA-T-T-CCAG---A-G---C-GCT-TTCCGCCCT--A--C-GGC--TC---TT---C----A------GTGGA---ATTT-CA----A-A---A---------------------A----TAACAA-TATCA--TAAATTGACGTCG----CTAT--TA-TGAC-G-----TCAT--AGTAAGA---CAACGT-T---AATTTT-T-TG-GCG-CAA---TAAATGTTAATGAA-ATGCACCA-AA--AT-AATGCCTGTGGCTCT---AAATaa
gi|7 : atatataataattgagttgaagatttcacattAGGACAGGTCATACAATATAGTAGATTTTGTAGATTTGCAC---------TTC-ATTGGTGAA--TTT----ACA-TTAAATTT-----CAT-TCCGTTTTTTGTAT-----TAGTTAACCGCATCGTGGATTCTCGCATCTGAAAA-------------CTTCTTG-T---TTGTGAATTTAGTTTTAGTGAGAAATTTTCTTCAAATTT-TGTGGTTAAAGTCTACTGTGGAG-TATATTCGTGGAC--TGGATGAGAT-TCTTTA-ATGTTTCTGACTGtataattttcaaacattttttttaaggaagaaattaaaaat
gi|8 : tAATCTTCATGTGGAATGGACCAAAACATAAAACAATCGTCTAAAAAT-CGCTTCCAATTAGACATTATGTATTGCGCAAATTATTTTCCATAATAACTTGTCTGTGTTTCGAAATAATTTCTCTTTTCGAAATCCCAATATTTGGTTAGCATATAT
gi|8 : TATTTGTAAGACGTGTTATAT-GTTAAACATACAATAGTTAT-ATCGAGTACTAATTGTAATCTCTCTttgtaagacgtgttatatgttaaacatacaatagttatatcgagtactaattgtaatctctcttat
gi|9 : aatcttcatgtggaatggaccaaaacataaaacaatcgtctaaaaatcgcttccaattagacattatgtattgcgcaaattattttccataataacttgtctgtgtttcgaaataatttctcttttcgaaatcccaatatttggttagcataTTTTTATATGATGTTTTTCCCCTTCT----TCAATATACTC-ACACGTTCCACTATAGAGCATATCCGTCTGGCTTAGTTGAATGGTATGTTACGCT--GTATGTGCCCGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCTGTtat
blockSeqs : C GT G TT CATTAAAGA A G T TAGTA A CG ATA ACCCGAGATATCAT T AC A TCCG C ATAGCAACAA A T GTAC G G GT T TT AGTA AT C A CTCTT GTA CTCT ATA TTAAATAATA T T GT T C GAA AC TT A C T CTA CAA T AC TC T CTGTG CGT CA C GGT GGAGGTATTCCCATTA CAC A CTCTCTTAA G CGA C CCAGCAGT TTCTTATTCGCTC TTAAGGAA CCAG T T ACTATTATAAGTTTTCTCTGACATACTTTTT C ATA T T G G T TA . . T . . . T . . GT T . T A T T T CTGCATGTA ATCA G T A TA C T G CT C G G G T G C T T T T C G A GA T T G TGGTATACGAC T C T G A A C C GGAAACT T AT A G ATATACTCACACGTTCC TAA TT G . C T . TT C C AA C A . A A T T G C C T T G C A . C A G G T GG T G
blockSeqs : C C . GC CTTAAG . . C GT . CG . TGACA T AC . . . TGCACTGA . G . A . . T . . . . . . AGT G GTA ACTAAAT . . G . C AC C . . . C . . T . . . TA . A . . GGT . A . . . C ATT TATAAATTGTAT . . C . GTTAGGTTACATCC T . T T A . T C . A . G . G . C . . C . . . . . . . . T . . T . . . . . . . T . C . TCATCG G AG G . C . . . . . A .
blockSeqs : C . . C GATCG . . . GA . . . CAGAA T AT . . . TAACAA . A . A . . A . . . . . . A A GT AATTTTT . . . . A A A . . . . . A . A . . . . . . CC .
blockSeqs : . . . C CTTAG . . . GT . . . CAGG T AT . . . TACAAA . . . . . . . .
blockSeqs : . . . T GAG . . . A . . . CATA G G . . . A
blockSeqs : . . T GAG . . . A . . . CA . . . . .
blockSeqCons : CANA***********
originalCons : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-CGCCTT--GT-C-GGC--TC---TT---CGA-GA------GTGTAACGATTT-CA----A-A-T-A----CA---A-GTCT-TTGNTA----TGACAA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGCGTAT---AA-TAA-T-TG-GCG-CAAG-TTAAA-GTCNAT--A-AGGCGCCACAA--AT-AAAG-CGGTGGNTAT---AAATA---TTGACAA-TTGA--GGA-GT---TGAAATGA---TTA-A--TAGCAT-TCA---ACTTC---GGT----------TTAA---ATTATATTT---------ACAAGAT--AGTCTCTCTTTCGCTCT-----ANCGTAAATGA---T-T--ATT-GC-CTTTTTCTAAAAC--------TTTGTAGATAC----GGNAA-AATCGTAGC-----TAAGTT-------ACATCC-----ATTAGCACATANATCAAAATATGTTTTACTGCAGGGTGTTATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGNACAGGTCATGCAATATANTAGATCNTGTAGATTTGCACGACATATTGTTCGANTGGTGAAAGTTTTGCCACATTTAAACGTGAAAGCATCTCCNNTTTTTGNATAAGGGCAGNTAACCGCANCGNGGATCCNCGCATCTGGAAACTGCA-GT-TTTTCTTCTTA-TCGGTTGNAAATTTGGCTCTNGTCAG-TATTTTCTTCAGATTTAGGAGGTTAANGTCGACTGTAGAT-AATGTTCTTCAAT--TCAATGANAT-TCCTTAGAT-TTTCGGATTGT-TATA-AATCGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTAC-GGGATTGTGAGTTACG-ACG--AGGTGGATTTG-TTTTCTGATTTCATCCTGAGTTCCCGATTTTCTGGAGTTCCGAAGTTCTGAGATTGGTATA-G-A-TCTATGCCTTCTCTATAGCGATATATATTAAATTTTCCGGATAT-TTCTGTCTAAGTAAAGAGGAAACTATGTTGTTAATTTCTGTATGACGTTTATTCNCTTCTGTTTTCA------TC-A-ACG----ACGATAGTGCAAACACGTCTCGCCTTGTTAAACGGTATGTTGCGTTTAGCATGTGNCGGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATNTTCATGTGGNNTGGACCAAAANATGAAACAATCGTCTAAANATGCGCTTCCAGTTAGACNTTATGTATTGCGCAANTTGNTTTCCATAATAACCTGTCTGTGTTTCGAAATAATTTCTCCTCTNGGAATCCCAGTACTNGGNTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAANANGTGTTATGTTGTCGAACATANAATAGTTGTTNTCNAGTACTAATTNTAATCCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCGTAACACGAATGTTCACCTACTA--GTCCGTTCTTNATTTCTTTGGGCTTGTTAATCTTT
finalCons : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-CGCCTT--GT-C-GGC--TC---TTCANA-----------GTGTAACGATTT-CA----A-A-T-A----CA---A-GTCT-TTGNTA----TGACAA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGCGTAT---AA-TAA-T-TG-GCG-CAAG-TTAAA-GTCNAT--A-AGGCGCCACAA--AT-AAAG-CGGTGGNTAT---AAATA---TTGACAA-TTGA--GGA-GT---TGAAATGA---TTA-A--TAGCAT-TCA---ACTTC---GGT----------TTAA---ATTATATTT---------ACAAGAT--AGTCTCTCTTTCGCTCT-----ANCGTAAATGA---T-T--ATT-GC-CTTTTTCTAAAAC--------TTTGTAGATAC----GGNAA-AATCGTAGC-----TAAGTT-------ACATCC-----ATTAGCACATANATCAAAATATGTTTTACTGCAGGGTGTTATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGNACAGGTCATGCAATATANTAGATCNTGTAGATTTGCACGACATATTGTTCGANTGGTGAAAGTTTTGCCACATTTAAACGTGAAAGCATCTCCNNTTTTTGNATAAGGGCAGNTAACCGCANCGNGGATCCNCGCATCTGGAAACTGCA-GT-TTTTCTTCTTA-TCGGTTGNAAATTTGGCTCTNGTCAG-TATTTTCTTCAGATTTAGGAGGTTAANGTCGACTGTAGAT-AATGTTCTTCAAT--TCAATGANAT-TCCTTAGAT-TTTCGGATTGT-TATA-AATCGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTAC-GGGATTGTGAGTTACG-ACG--AGGTGGATTTG-TTTTCTGATTTCATCCTGAGTTCCCGATTTTCTGGAGTTCCGAAGTTCTGAGATTGGTATA-G-A-TCTATGCCTTCTCTATAGCGATATATATTAAATTTTCCGGATAT-TTCTGTCTAAGTAAAGAGGAAACTATGTTGTTAATTTCTGTATGACGTTTATTCNCTTCTGTTTTCA------TC-A-ACG----ACGATAGTGCAAACACGTCTCGCCTTGTTAAACGGTATGTTGCGTTTAGCATGTGNCGGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATNTTCATGTGGNNTGGACCAAAANATGAAACAATCGTCTAAANATGCGCTTCCAGTTAGACNTTATGTATTGCGCAANTTGNTTTCCATAATAACCTGTCTGTGTTTCGAAATAATTTCTCCTCTNGGAATCCCAGTACTNGGNTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAANANGTGTTATGTTGTCGAACATANAATAGTTGTTNTCNAGTACTAATTNTAATCCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCGTAACACGAATGTTCACCTACTA--GTCCGTTCTTNATTTCTTTGGGCTTGTTAATCTTT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CATTTAATCCAGATAGCGTTCCCCTACGGCGATGCAGTGCATTTGCGAATAATAGCAATCTCATAAATAGACGTATATATTATGGCGTCATAGTAAGTCAAAGTTAATTTTATTTAGCAATGTATGGCAATGAAATGCACCAAAATAATAAAACAT
Unaligned ( gi|12 ): TAATTGAAGTTGAACGTATATATCCCATCATTTCATTCCAGCAGCGCTTTTCGGCCCTACGGCTCTCTTTCAGTCGTGAATTTCACAATCAATAACAATATTACTATCACTACTATACTATATTAATATAATAATCGTTACTT
Unaligned ( gi|16 ): TTGAGTAGAAGATTTCGCATCATTTTATTCCAGAGCACTTTCGCCCTACGGTTTTTACTGGAATTTCAAATAACAATATCATAAATCGACCTCAC
Unaligned ( gi|17 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|18 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|19 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|20 ): ATATATATATATAAGAACAGGTATTTAAAGTAGGGTATTTCACATTTAATTTCTTCCGAAGCGCTATCGCGCTACACGGCTCATCAGTGGA
Unaligned ( gi|21 ): TATATAAATACATATATAGAAAAATTGAGTTGAAGATTTCACATTATTTATTCCAGAGCGCTTTCGCCCTAGCGCTCTGGAATAAAATAA
Unaligned ( gi|24 ): ACCATATTGAAATAACGTTGCAATTTAATGATGTCATAGTAGCAGACGTCCGTCGATTTTTGGCGCAATAGATTT
Unaligned ( gi|25 ): ATATATATATATATTCAAATGAAAAAAACTGAGTTGAAGATTTCACATTATCTATTCCAGAGCGCTT
Unaligned ( gi|26 ): TATGTCTATAGTTATATGTAGAAAATATTGAGTTGAAGATTTCACATTATTTATT
Unaligned ( gi|27 ): AAAAAATTGAGTTGAAGATTTTCACATTATTTTATTCCAGAGCGCT
Alignments
lowQualScore : 11 1111111111 11111 111 444444444444444444444444 1111 3333333333333 1111 11 11 2222 11 1 1 22222 11111 1111 111111111111 1 1 11 1 1111 11 1 1 1 111 222 22 11 1 33333 222 2222 1 222 6666666666666666 222 555555555 1 222 44444444 6666666666666666 44444444 2222 1 6666666666666666666666666666666 222 1 1 11 333333333 1 11 2222 1 22222 1 22222 1 333333333 2222 1 11 1 11 1 1 1 1 1 1 1 1 1 11 1 333333333333 1 3333333 11 444444444444444444 111 11 1 1 1 11 1 1 1 1 1 1 11 11
lowQualScore : 0 2 33 5 888 5555555555 5 5 666 66666 5 999 000 999999999999999999999999 7 1 5 2222 5 0000000000000 6 8 3 7777 0 3 8 11 6 11 1111 33 0 0 55555 88888 7777 666 999999999999 0 0 22 0 1 4444 0 99 33 0 0 0 0 0 777 333 7 00 88 3 44444 333 2222 3 333 1111111111111111 333 7 333333333 2 555 6 22222222 0000000000000000 88888888 8888 1 3 0 7777777777777777777777777777777 1 111 5 5 1 1 1 88 888888888 5 1 88 3333 5 2 66666 5 22 1 66666 1 5 1 1 1 000000000 0000 1 1 3 44 1 0 0 1 33 0 0 2 0 7 3 3 3 7 3 7 3 3 3 88 3 7 6 777777777777 7 6 3 6 7 7 6 3 2222222 7 11 1 6 555555555555555555 000 33 2 3 6 3 3 88 1 5 22 1 1 5 1 1 1 5 2 5 1 1 1 1 1 5 5 1 66 1 1 7 0 88 1 6
lowQualScore : . . .. . ... .......... . . ... ..... . ... ... ........................ . . . .... . ............. . . . .... . . . .. . .. .... .. . . ..... ..... .... ... ............ . . .. . . .... . .. .. . . . . . ... ... . .. .. . ..... ... .... . ... ................ ... . ......... . ... . ........ ................ ........ .... . . . ............................... . ... . . . . . .. ......... . . .. .... . . ..... . .. . ..... . . . . . ......... .... . . . .. . . . . .. . . . . . . . . . . . . . . .. . . . ............ . . . . . . . . ....... . .. . . .................. ... .. . . . . . .. . . .. . . . . . . . . . . . . . . . . . .. . . . . .. . .
lowQualScore : 8 5 66 7 333 4444444444 7 7 000 99999 7 333 000 000000000000000000000000 6 9 7 1111 7 7777777777777 7 0 8 0000 8 8 0 00 0 00 2222 88 0 0 00000 55555 8888 888 000000000000 0 0 55 0 0 8888 2 88 88 0 0 2 8 8 555 333 3 77 33 3 33333 333 7777 3 333 0000000000000000 333 3 333333333 0 777 7 33333333 7777777777777777 33333333 3333 0 3 7 7777777777777777777777777777777 0 555 5 5 0 0 0 55 000000000 0 0 00 0000 5 5 55555 0 00 0 00000 0 5 0 0 0 777777777 0000 0 0 3 77 0 0 2 2 88 8 0 5 0 0 3 3 7 3 3 3 3 3 3 33 3 3 7 333333333333 3 7 7 7 3 3 7 3 0000000 3 00 0 7 000000000000000000 888 88 5 3 7 3 3 33 0 0 00 0 0 0 0 0 0 5 5 0 0 0 0 0 0 5 5 0 55 0 0 3 7 33 0 7
consensus : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-C-GCCTT--GT-C-GGC--TCTT---CANA-G--T----------------GTAACGATTT-CA----A-A-T-A----CA---A-GTCT-TTGNTA----TGACAA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGCGTAT---AA-TAA-T-TG-GCG-CAAG-TTAAA-GTCNAT--A-AGGCGCCACAA--AT-AAAG-CGGTGGNTAT---AAATA---TTGACAA-TTGA--GGA-GT---TGAAATGA---TTA-A--TAGCAT-TCA---ACTTC---GGT----------TTAA---ATTATATTT---------ACAAGAT--AGTCTCTCTTTCGCTCT-----ANCGTAAATGA---T-T--ATT-GC-CTTTTTCTAAAAC--------TTTGTAGATAC----GGNAA-AATCGTAGC-----TAAGTT-------ACATCC-----ATTAGCACATANATCAAAATATGTTTTACTGCAGGGTGTTATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGNACAGGTCATGCAATATANTAGATCNTGTAGATTTGCACGACATATTGTTCGANTGGTGAAAGTTTTGCCACATTTAAACGTGAAAGCATCTCCNNTTTTTGNATAAGGGCAGNTAACCGCANCGNGGATCCNCGCATCTGGAAACTGCA-GT-TTTTCTTCTTA-TCGGTTGNAAATTTGGCTCTNGTCAG-TATTTTCTTCAGATTTAGGAGGTTAANGTCGACTGTAGAT-AATGTTCTTCAAT--TCAATGANAT-TCCTTAGAT-TTTCGGATTGT-TATA-AATCGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTAC-GGGATTGTGAGTTACG-ACG--AGGTGGATTTG-TTTTCTGATTTCATCCTGAGTTCCCGATTTTCTGGAGTTCCGAAGTTCTGAGATTGGTATA-G-A-TCTATGCCTTCTCTATAGCGATATATATTAAATTTTCCGGATAT-TTCTGTCTAAGTAAAGAGGAAACTATGTTGTTAATTTCTGTATGACGTTTATTCNCTTCTGTTTTCA------TC-A-ACG----ACGATAGTGCAAACACGTCTCGCCTTGTTAAACGGTATGTTGCGTTTAGCATGTGNCGGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATNTTCATGTGGNNTGGACCAAAANATGAAACAATCGTCTAAANATGCGCTTCCAGTTAGACNTTATGTATTGCGCAANTTGNTTTCCATAATAACCTGTCTGTGTTTCGAAATAATTTCTCCTCTNGGAATCCCAGTACTNGGNTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAANANGTGTTATGTTGTCGAACATANAATAGTTGTTNTCNAGTACTAATTNTAATCCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCGTAACACGAATGTTCACCTACTA--GTCCGTTCTTNATTTCTTTGGGCTTGTTAATCTTT
Reference ( family-437 ) : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-C-GCCTT--GT-C-GGC--TCTT---CANA-G--T----------------GTAACGATTT-CA----A-A-T-A----CA---A-GTCT-TTGNTA----TGACAA-TGTAG--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGCGTAT---AA-TAA-T-TG-GCG-CAAG-TTAAA-GTCNAT--A-AGGCGCCACAA--AT-AAAG-CGGTGGNTAT---AAATA---TTGACAA-TTGA--GGA-GT---TGAAATGA---TTA-A--TAGCAT-TCA---ACTTC---GGT----------TTAA---ATTATATTT---------ACAAGAT--AGTCTCTCTTTCGCTCT-----ANCGTAAATGA---T-T--ATT-GC-CTTTTTCTAAAAC--------TTTGTAGATAC----GGNAA-AATCGTAGC-----TAAGTT-------ACATCC-----ATTAGCACATANATCAAAATATGTTTTACTGCAGGGTGTTATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGNACAGGTCATGCAATATANTAGATCNTGTAGATTTGCACGACATATTGTTCGANTGGTGAAAGTTTTGCCACATTTAAACGTGAAAGCATCTCCNNTTTTTGNATAAGGGCAGNTAACCGCANCGNGGATCCNCGCATCTGGAAACTGCA-GT-TTTTCTTCTTA-TCGGTTGNAAATTTGGCTCTNGTCAG-TATTTTCTTCAGATTTAGGAGGTTAANGTCGACTGTAGAT-AATGTTCTTCAAT--TCAATGANAT-TCCTTAGAT-TTTCGGATTGT-TATA-AATCGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTAC-GGGATTGTGAGTTACG-ACG--AGGTGGATTTG-TTTTCTGATTTCATCCTGAGTTCCCGATTTTCTGGAGTTCCGAAGTTCTGAGATTGGTATA-G-A-TCTATGCCTTCTCTATAGCGATATATATTAAATTTTCCGGATAT-TTCTGTCTAAGTAAAGAGGAAACTATGTTGTTAATTTCTGTATGACGTTTATTCNCTTCTGTTTTCA------TC-A-ACG----ACGATAGTGCAAACACGTCTCGCCTTGTTAAACGGTATGTTGCGTTTAGCATGTGNCGGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATNTTCATGTGGNNTGGACCAAAANATGAAACAATCGTCTAAANATGCGCTTCCAGTTAGACNTTATGTATTGCGCAANTTGNTTTCCATAATAACCTGTCTGTGTTTCGAAATAATTTCTCCTCTNGGAATCCCAGTACTNGGNTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAANANGTGTTATGTTGTCGAACATANAATAGTTGTTNTCNAGTACTAATTNTAATCCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCGTAACACGAATGTTCACCTACTA--GTCCGTTCTTNATTTCTTTGGGCTTGTTAATCTTT
gi|1 : GAAATAATTATCTACATT--TA-T-C-ACAC-TTA-G---C-GCT-TT-C-GCCTT--GT-C-GGC--TCTT---CAAA-GAGT----------------GTAATGATTT-CA----A-A-T-A----CAC--A-GTCT-TTGTTA----TGACAA-TGTAA--TTAA--GACGTCG----TTAT--TG-TGAC-G-----TCAT--A--AAGG---CAGC--AT---AA-AAA-T-TG-GCG-CAAG-TTAAA-GTCAAT--A-AGGCGCCATAA--AT-AAAG-CAATGGATAT---AAATA---T-GACAA-TTGA--GGA-GT-----AAATGA---TTA-AAATAGCAT-TCA---ACTTC---GTT----------TTAA---ATAAT-TTT---------ACAAAAT--AGTCT-TCTTTCGCTCT------CCGTAAATGT---T-C--ATT-G-----TTTCTAAAAC--------TTTGTAGAAAC----GGAAA-AATTAAA--------AAGTT----------TCC-----ATTAGCACATAAATCAAA---TGTTT-ACTGCAGGGTGT-ATTCCTGACGGATGGGTCCCGTGTCGGTTGCTGTGGACTCTCACACGGTCAGCTAACTTAGTTCGGTCTGTCCTATGTAATTTTCTCCGCAGGAGTACAAATCATGCAATATATTAAATCATG--GATTTACATGACATATTGTTCGAATGGTGAAAGTTTTGCCACATTTAAACGTGAAAGTATCTCCTGTTTTTAAATAAGGGCAGGTA-CTGCAACGGGGATCCATACATTTGGAAACTGTA-GT-TTTTCCTTTTA-TTGGTTGAAAATTTGGCTCTGGTCAG-TAGTTTCTTTAGATT-AGGAGGTTGAAGTCGACTGTAGAT-AATGTTCTTCATT--TCAATGATGC-TCCTTAGAT-TTTCGGATTGT-TATA-AATAGGAAAGCATTGTTTAACAGAATTA-TACATATTA-ATATTAC-CGGATTGTGAGTTACG-ACG--AGGTGGATTTG-ATTTCTGATTCCATCCTGAGTTCCCGA-TTTCTGAAGTTCCGAAGTTCTGAGATTGGTATA-GAA-TCTA-GCCTTCTCTATAGCGATATATATTAAATTTGTCGGATAT-TTGTGTCTAAGTAAAAA-------ATGTTGTTAATTCCTGTA-GACGTTTATTCTCTTCTGTTTTCA------TCAA-ACG----ACGATGGTACAAACACGTCTCGCCATGTTAAACGGTATGTTGCGTTTA-CATGTGA-GGGATGACAAGAATTGAATAT-CAGGTACTGGTGTGAGT-CCGTTT--TCTTGTAGTATAAATCCGTTGTAATTTTCCTGTTCTTCTTTTTTACGAGGATATCCAAAAAAAGTAGTTCTGTGCTGCTTGTTTCCACCGTAAATTGAATCGAGGGATGTAAACTGTTCAAACACATTATGAAAGCTCTCTAATATT-ATGTGATTTGGACCAAAAAATGAAACAATCGTCTAAATATGCGCTTCCAGTTAGATTTTATGTATTGCGCAACTTGATTTTCA-AATAATCTGTCTGTGTTTTCAAATAATTT-TCCTCTAGGAATCCTAGTACTAGGGTAGCATATGTGGGGCGACTAGTAGTACCCATGGCTGTTCCTTTTATTTGTAATAAGTGTT-TGTTGTCGAACATAGAATAGTTGTTCTCTAGTACTAATTTTAATCCCTCT
gi|1 : AATTGGTCTTAGCTTTAAATCTGATGGTTGTGGTAATTTGGCGTAACACGAGTTTTCACTTATTA--ATCTGTTCTGGATCTCTTTGGATTTGTGAATCTTTaagatgtctttggaaaatctaggattaatttcgctttggtgtttatcgatccagaatgcaattgcttctgtatgtggtatgttgtatacagagagtgacatcaaaaagccatttttggtatcaacctcaacttgttctggggatatggctgaggaaattctaaaatcgttaagaagtatgtctaataaattgctgagtatgtgggtggaacaagcaggtccggctacaattggtcttagctttaaatctgatggttgtggtaatttggcgtaacacgagttttcacttattaatctgttctggatctctttggatttgtgaatcttt
gi|11 : gaaataattatctacatttatcacacttagcgctttcgccttgtcggctcttcaaagagtgtaatgatttcaaatacacagtctttgttatgacaatgtaattaagacgtcgttattgtgacgtcataaaggcagcataaaaattggcgcaagttaaagtcaataaggcgccataaataaagcaatggatataaatatgacaattgaggagtaaatgattaaaatagcattcaacttcgttttaaataattttacaaaatagtcttctttcgctctccgtaaatgttcattgtttctaaaactttgtagaaacggaaaaattaaaaagtttccattagcacataaatcaaatgtttactgcagggtgtattcctgacggatgggtcccgtgtcggttgctgtggactctcacacggtcagctaacttagttcggtctgtcctatgtaattttctccgcaggagtacaaatcatgcaatatattaaatcatggatttacatgacatattgttcgaatggtgaaagttttgccacatttaaacgtgaaagtatctcctgtttttaaataagggcaggtactgcaacggggatccatacatttggaaactgtagtttttccttttattggttgaaaatttggctctggtcagtagtttctttagattaggaggttgaagtcgactgtagataatgttcttcatttcaatgatgctccttagattttcggattgttataaataggaaagcattgtttaacagaattatacatattaatattaccggattgtgagttacgacgaggtggatttgatttctgattccatcctgagttcccgatttctgaagttccgaagttctgagattggtatagaatctagccttctctatagcgatatatattaaatttgtcggatatttgtgtctaagtaaaaaatgttgttaattcctgtagacgtttattctcttctgttttcatcaaacgacgatggtacaaacacgtctcgccatgttaaacggtatgttgcgtttacatgtgagggatgacaagaattgaatatcaggtactggtgtgagtccgttttcttgtagtataaatccgttgtaattttcctgttcttcttttttacgaggatatccaaaaaaagtagttctgtgctgcttgtttccaccgtaaattgaatcgagggatgtaaactgttcaaacacattatgaaagctctctaatattatgtgatttggaccaaaaaatgaaacaatcgtctaaatatgcgcttccagttagattttatgtattgcgcaacttgattttcaaataatctgtctgtgttttcaaataattttcctctaggaatcctagtactagggtagcatatgtggggcgactagtagtacccatggctgttccttttatttgtaataagtgtttgttgtcgaacatagaatagttgttctctagtactaattttaatccctctaagatgtctttggaaaatctaggattaatttcgctttggtgtttatcgatccagaatgcaattgcttctgtatgtggtatgttgtatacagagagtgacatcaaaaagccatttttggtatcaacctcaacttgttctggggatatggctgaggaaattctaaaatcgttaagaagtatgtctaataaattgctgagtatgtgggtggaacaagcaggtccggctacGATATTATTATCTACATT--TA-T-C-ACAG-ATC-G---C-GCT-TT-T-GCATT--GT-C-GGC--TCTT---CAGG-G--T----------------GTAACATTTT-CA----A-A-
gi|13 : gagacggggtnnnnnnnnnnnnnnnnnnnnnnnnnagagagagagagagagagagagaggacgggactctaaagatggctgTAGCTACATT--TC-T-TTACAC-TTAAG---C-GCT-T--C-GCCTT--GA-C-GGC--GCTT---CATA-G--T----------------GTAACAATTT-CA----A-A-T-G----CACTGA-GTATATTGTTA----TGAC-A-TGTAG--TTAA--GA
gi|14 : AATTAGCCTTAGTTTTAAATCTGATGGTTGTAGTAATATGGCATACAACGAATGTTCACCTACTA--GTCCGTTCTTTATTTCTTTGGGCTTGTTAATCTTTtt
gi|15 : AATTAGCCTTAGTTT-AAATCTGATGGTTGTAGTAATATGGCATAACAAGAATGTTCAACCACTAGGGTCCGTTCTTATTTTCTTT-GGCTTGTTAATCTTT
gi|2 : GAAATA-TTATCTA-ATTC-TA-T-C-ACACATTA-AAGAC-GCT-TTTC-GCCTCTAGTAC-GAC---CGT---CATA-T--TACCCGAGATATCATACGTAATGATATACA----A-AAT-AGCAACA---A-GTCT-TTAGTAGTACTGACGAGTGTAG--T-AA--GACGTCAAGTATTTT--TGCTGAC-GCTCTTTTAT--A--AAGG---CAGCATATTTAAA-TAA-TATGTGCG-CAAGTTTAAA-GCTCAT--ACCGGCGCC-CAATTATAAAAA-CGGTAG-TATCTAAAATA---TTGACA---TGATCTGA-GTCTGTGAAATGACGTTTACA--TAGCAT-TCAGGTACTTCGGAGGTATTCCCATTATTAACACATTATATTTCTCTCTTAAACAA-ATCGAGTATCCTTTTCGCTCTCCAGCAGTATACATGATTCT-T--ATTCGCTCTTTCTCTACAACTTAAGGAATTTTTTGGTATCCAGGATAA-AATCATAACTATTATAAGTTTTCTCTGACATACTTTTTAATGACAAATACATCAAAATATGTTTTACTGCAGGGTGTTATT
gi|22 : tAGTATGTGTTG--ATGGCAAGATTTAAA-AGCCAAATACTGATGTGTTATCCG-TCTTCCTTGCAAAATATGTt
gi|23 : ATTATC---ATT--TA-T-T-CCAG---A-G---C-GCT-TT-C-GCCCT--A--C-GGC--TCTTTGACATG-G------------------------GATTT-CT----A-A-TAA----CA---A-aattgaactttt
gi|3 : gaagatttcacAATAATTATTTACATTGTTAGTGC-ACAC-TTA-G---CAGCTGTT-T-GCAAT--GT-TAGGCCGTCTT---CAGAAG--T-----------------TAATGTTTT-CATCCGACA-T-A----CA---AAGTCT-TTGATT----TG-CAG-TGTAGGTTTAA--GACATCG----TTATATTG-TGACAG-----TCATGTA--AAGCTCTCAGCGTAT---AC-TAAAT-TG-GCGTCAAG-TTAAA-GTCCAT--A-AGCTCCCACAA--GC-TAAG-TGGTATTTGT---TAGTACAATTGACAACTTGT--GGATGT---TAAAGTGA---TTA-A--TAGCATCTCA---ACTTG---GGT----------TTAA---ATTATATTT---------ACAAGAT----TCTCTCTTTCGTTCT-----ATTGTAAATGA---TATAAATT-GTATTTTTTCTAATAC--------TTTGTAAATAC----GGCAATAATCGTAGT-----TAGGTT-------ACATCC-----ATTAGCACATATAcaaat
gi|4 : gagatcgagattgactactctggcgatgatagtaggggaaagactgagagagagacggagagaggacggaataaatccatacgatagatttgactcgTGGAAACTGCATGTATTTTTTTCTTAATCAGATGGAAATTTGGCTCTTGTCAG-TATTATTTTCAGGTTTAGGAGCTTAACGTCGACTGTAGAT-AACGGTCTTTAGT--TCAATGACAT-CTCTTAGAT-GTTGGGATTGT-TGTACAATTGAAAAACAATTTTTAACATAATGA-TGTATATTA-ATATTACGGGGATTGTGAGTTACG-ACG--AGGTTGATTTA-TTTTCTGATTTCATCCTGGGTTCCCAATTTTCTGGAGTTCTGAAGTTCTGCGAT--------------TATG---------TAGC---ATATATT---TTTTCCGGATAT-TTCTGT
gi|4 : ATTTCTGTATG---TCTAATTACTCCTGTTTTAA------TC-A-TCG----ACGATACTGCAAACACGTCTCGCCTTGTTAAACGGTATGCTGCGTTTAACATGTGAGGGGatgtctaattactcctgttttaatcatcgacgatactgcaaacacgtctcgccttgttaaacggtatgctgcgtttaacatgtgagggg
gi|5 : tggaaactgcatgtatttttttcttaatcagatggaaatttggctcttgtcagtattattttcaggtttaggagcttaacgtcgactgtagataacggtctttagttcaatgacatctcttagatgttgggattgttgtacaattgaaaaacaatttttaacataatgatgtatattaatattacggggattgtgagttacgacgaggttgatttattttctgatttcatcctgggttcccaattttctggagttctgaagttctgcgattatgtagcatatattttttccggatACGTCGACTGTAAATTAATGTTCTTCAATCTTCAATGA-ATGTCCTTAGAT-TTTCGGA-TGTGTAAA-AATCGGAAAGCATTG-TTAACAGAATTATTACA-ATTACATATTAC-GGGATTGTGAGTTACGAACGGAAGGGGCATTTGTTTTTCTGATTTCATCCTGAGTTTCCGATTTTCT-GAGTTCCGAAGTTCTGAGATTGGTATACG-ACTCTATGCCTTTTCTATAGCGATATCT-TTAAATTTTC--GATATCTTCTGTCTAAGTAAAGAGGAAACTATGTTGT
gi|6 : ATT--TA-T-T-CCAG---A-G---C-GCT-TT-CCGCCCT--A--C-GGC--TCTT---CA---G--T----------------GGAA---TTT-CA----A-A-------------A-----------A----TAACAA-TATCA--TAAATTGACGTCG----CTAT--TA-TGAC-G-----TCAT--AGTAAGA---CAACGT-T---AATTTT-T-TG-GCG-CAA---TAAATGTTAATGAA-ATGCACCA-AA--AT-AATGCCTGTGGCTCT---AAATaa
gi|7 : atatataataattgagttgaagatttcacattAGGACAGGTCATACAATATAGTAGATTTTGTAGATTTGCAC---------TTC-ATTGGTGAA--TTT----ACA-TTAAATTT-----CAT-TCCGTTTTTTGTAT-----TAGTTAACCGCATCGTGGATTCTCGCATCTGAAAA-------------CTTCTTG-T---TTGTGAATTTAGTTTTAGTGAGAAATTTTCTTCAAATTT-TGTGGTTAAAGTCTACTGTGGAG-TATATTCGTGGAC--TGGATGAGAT-TCTTTA-ATGTTTCTGACTGtataattttcaaacattttttttaaggaagaaattaaaaat
gi|8 : tAATCTTCATGTGGAATGGACCAAAACATAAAACAATCGTCTAAAAAT-CGCTTCCAATTAGACATTATGTATTGCGCAAATTATTTTCCATAATAACTTGTCTGTGTTTCGAAATAATTTCTCTTTTCGAAATCCCAATATTTGGTTAGCATATAT
gi|8 : TATTTGTAAGACGTGTTATAT-GTTAAACATACAATAGTTAT-ATCGAGTACTAATTGTAATCTCTCTttgtaagacgtgttatatgttaaacatacaatagttatatcgagtactaattgtaatctctcttat
gi|9 : aatcttcatgtggaatggaccaaaacataaaacaatcgtctaaaaatcgcttccaattagacattatgtattgcgcaaattattttccataataacttgtctgtgtttcgaaataatttctcttttcgaaatcccaatatttggttagcataTTTTTATATGATGTTTTTCCCCTTCT----TCAATATACTC-ACACGTTCCACTATAGAGCATATCCGTCTGGCTTAGTTGAATGGTATGTTACGCT--GTATGTGCCCGGATGGCAAGAATTAAA-ATCCAAATACTGATGTGTTA-CCG-TC--CCTTGCAAAATATGTCTGTtat
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CATTTAATCCAGATAGCGTTCCCCTACGGCGATGCAGTGCATTTGCGAATAATAGCAATCTCATAAATAGACGTATATATTATGGCGTCATAGTAAGTCAAAGTTAATTTTATTTAGCAATGTATGGCAATGAAATGCACCAAAATAATAAAACAT
Unaligned ( gi|12 ): TAATTGAAGTTGAACGTATATATCCCATCATTTCATTCCAGCAGCGCTTTTCGGCCCTACGGCTCTCTTTCAGTCGTGAATTTCACAATCAATAACAATATTACTATCACTACTATACTATATTAATATAATAATCGTTACTT
Unaligned ( gi|16 ): TTGAGTAGAAGATTTCGCATCATTTTATTCCAGAGCACTTTCGCCCTACGGTTTTTACTGGAATTTCAAATAACAATATCATAAATCGACCTCAC
Unaligned ( gi|17 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|18 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|19 ): AGATTTCACATTGTATTCGCAAGAAGAGCTTTGCGCGCAGCGGCTTTTGCGGTTGAATTTGATAAAATAACGATATCATATTGGCTTTTATACAT
Unaligned ( gi|20 ): ATATATATATATAAGAACAGGTATTTAAAGTAGGGTATTTCACATTTAATTTCTTCCGAAGCGCTATCGCGCTACACGGCTCATCAGTGGA
Unaligned ( gi|21 ): TATATAAATACATATATAGAAAAATTGAGTTGAAGATTTCACATTATTTATTCCAGAGCGCTTTCGCCCTAGCGCTCTGGAATAAAATAA
Unaligned ( gi|24 ): ACCATATTGAAATAACGTTGCAATTTAATGATGTCATAGTAGCAGACGTCCGTCGATTTTTGGCGCAATAGATTT
Unaligned ( gi|25 ): ATATATATATATATTCAAATGAAAAAAACTGAGTTGAAGATTTCACATTATCTATTCCAGAGCGCTT
Unaligned ( gi|26 ): TATGTCTATAGTTATATGTAGAAAATATTGAGTTGAAGATTTCACATTATTTATT
Unaligned ( gi|27 ): AAAAAATTGAGTTGAAGATTTTCACATTATTTTATTCCAGAGCGCT