lowQualScore : 333333333333333333333333333333333333333
lowQualScore : 11 4444 11 33 55555555555555 1 111 1111 11 1 444444 3333333333 111 333 333 222 1 1111 111 1 1 1 1 11 11 1 111111 11 6666666666 22 1 4 1 1 1 1 1 11111 2 55555 2 000000000000000000000000000000000000000 1 88888888888 4 1 4 4 2 444 4 2 4 4 44 11 44444444 777 222 1 1 66666 222 5555 4 4
lowQualScore : 8 8 88 3333 2 33 33 00000000000000 3 8 6 999 0 8 8 8 0 7777 33 3 0 3 777777 8888888888 8 111 5 7 111 8 3 111 222 2 0 9999 6 0 000 0 0 3 3 88 88 3 888888 88 7 6 0000000000 77 9 3 0 2 5 5 5 0 999 4 0 77777 4 8 4 44444 2 0 777777777777777777777777777777777777777 5 11111111111 0 5 0 0 0 555 0 0 0 0 22 2 88 66666666 6 000 111 5 5 55555 777 1111 0 0
lowQualScore : . . .. .... . .. .. .............. . . . ... . . . . . .... .. . . . ...... .......... . ... . . ... . . ... ... . . .... . . ... . . . . .. .. . ...... .. . . .......... .. . . . . . . . . ... . . ..... . . . ..... . . ....................................... . ........... . . . . . ... . . . . .. . .. ........ . ... ... . . ..... ... .... . .
lowQualScore : 0 0 22 8888 2 88 88 88888888888888 2 0 0 000 8 0 0 0 8 0000 88 2 0 2 000000 8888888888 0 888 0 8 000 0 8 444 000 5 0 2222 0 2 000 0 0 3 3 33 33 3 777777 33 3 7 2222222222 00 0 3 0 5 5 5 0 5 555 0 5 55555 0 5 0 00000 5 0 555555555555555555555555555555555555555 0 55555555555 0 0 0 0 0 555 0 0 0 0 55 5 00 55555555 0 000 000 0 0 00000 000 0000 0 0
consensus : TTCTCCCATTACT-ACCC-AT-GTGAGATAGGTT-TCTCCC--ATG-TGAGAAAGA-G-CCT-CGTT-GAGATCCGCCT-ATTCT-C-ACATG-AGCACG-TG-ACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTTTT--AAAAAAAA----CTTTCAAAAG-AAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGNCCCTGTCC-TCCCCGAATGTACGCAAATCCC-C-GGCGAGCTCG-ATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACAATAACGTTACAG-CAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTNTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATGNAANNNTNTAGNTAAAAACGNCTGGCTTACCNGAAGATCGAAAANTCACNCTTTAACACGAGCNTCGAGCAAACAAATTAGCCCAGAACATTA-GGC-----CAT----TGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTTA-CGGGTCACAAAAATCCA-GGACCA-CTGGAACAACC-TATCGTA-CACTGAAATAACACTCATA-AACATGCAATTTCC-TCTATTN-TGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCGGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGC-CACGCAGC-AAACGCAGTCAG
Reference ( gi|2 ) : TTCTCCCATTACT-ACCC-AT-TTGAGATAGGTTGTTTCTC--AT--TGAGAAAAAAG-CCTGCGT--GAGATCCGCCT-AT-CT-T-ACATG-AGCACG-TG-ACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTTTTTTACAAAAAA----CT-C--AAAG-AAT--ATGGCCATCTCCCGTT-T-ACGA-ACAAATTTACG---AAACACAAGGCCCTGTCC-TCCCGAAGTATACGCAAATCCC-C-AGCGAGCTCG-ATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACATTA-TGT-ACAGGCAACCCCGATAATCTATTTTACTTGGCGG-TTGTTACAAACAACAAAA-TCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATACAAAGTTTTAGCTAAAAAAGCTTGGCTTACCTGAAGATCGAATATTCACA---TAACACGAGCGTC-AGCAAACA--TTAGTCCAGAAAATGACGGCAAAGACATACAATGTCCCAGATTCCCTCCTTGTTAAAAGCTGTATGTTAACGGGTCACAAAAATCCAAGGATCAACTGAA-CAACCCTATCGTAACACTAAA-TAACACTCATATAACATGCAATTTCCCTCTATTCCTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCCACCCCCCCTCCTGTCGCCCCCA-CCGGTGATGCATCTGTGGGACGGAACAAATATGCTAGTACTTACTGCTCCTGCAGCAAAACGC-GTCAG
gi|4 : TTCTCCTATTACT-ACCC-AT-GTGAGATAGGTT-TCTCCC--ATG-TGAGAAA---G-CCT-CGC--GAGACCCACCT-AT-CT-C-ACATG-AGCACG-TG-ACTCGATAAGCCG----GGACTAC--TTTTAGGGGAAA-TTCGTCTGCTATTTTT---A-AAAAAA----CTTC--AAAGGAAT--ATGGCCACCTTCCGTT-TTACTA-ACGA---TACG---AAACACAAGTCCCTGTCC-TCCCTGAATGTACCCAA-TCCC-C-GGCGAGTTCA-ATGTCC-TATC--ACCAC--GTACA-ATTTTT--AT--CGCT--CAATGATACCCCAGA----A-T-T-ACA---------------CCATTTTACTTGGCGG-TTGTTATAAAAAACAAAAATCCTCGGATCGATGAAAGATGGTTTGTAAGTGGACCGGAAAGAATAAAATTGAGTCTCCCATGTAACTATATAGTTAAAAACGCT-GGCTTACCAGAAGATCGAAAAATCACT---TAACACGAGCCTC-AGC--------------AAAACATTA-GGC------------TATCC-AGATTCCCTTC-------AAG-TGTATGTTA-CAGGTCACAAAAATTCA-GGATCA-CTGGA-CAACC--ATCGTA-CACTGAA-TAACACTCATA-AACATGCAATTTCC-TCTATTG-TGTCAGCAAATACATCTTGTGAAAACCAACGTACAC-----CC-CTCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGT
gi|5 : TTCTCCCATTACTTACCC-ATGTTGAGATAG--T-TTTCCC--ATGTTGAGAAA---G-CCT-CTTTTGAGATCCGCCT-AT-CT-CCACATG-AGCACG-TG-AC-CGATAAGTCGTAGGAGACTAC--TTTTAGGGGAAAATCCGTCTGCTATTTTTA--ATAAAAAA----CT-TCAAAAG-AATTGATGGCCACCTCCCGTTAT-ACGATACAA-TTTACGCGAAAACACAGGTCCCTGTCC-TCCCCGAATGTACACCAATCCCAC-AGCGAGCTCG-ATGTCCCTATCTGGCCACAATTACGCATCTTTCTATTACGCTTCCAATGAGACCCCAGACAATAACGTTACAG-CAACCCCGATAACCTATTTTACTTGGCGGTTTGTTACAAACAAgac
gi|6 : ctTTCTCCCATTACT-ACCC-AT-GTGAGATAGGTT-TCTCCC--ATG-TGAGAAAGA-G-CCTCCGTT-GAGATCCGCCT-ATTCT-C-ACATGGAGCACG-TGGACTCGATAAGTCG----GGACTACATTTTTAGGGGAAA-TCCGTCTGCTATTTT----AAAAAAAAAAACTT-T--AAAG-AAT--ATG-CCACCTCCCGTTAT-ACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCCTCCCGAA-TGTACGCAATTCCC-CCAGCGAGCTTGGATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATG-GACCCCA-ACA
gi|10 : TTCTCCCATAACT-ACCCCAT-GTGAGATAG----TTTCTCCAAT--TGTGAGAGAAGGCCT-CGT--G-GATCCGCCTCAT-CT-C-AC-TG-AGCACGCTG-ACTCGATAAGTCG----GGACTAC--TTT--AGGGAAA-TCCGTCTGCTA--TTTTAAAAAAAAAA----CT-TCAAAAG-AAT--ATGGCCACCTCCCGTTAT-ACGA-AC-AATTTACGA--AAACACA
gi|16 : ttTTCTCCCATTACT-ACCC-AT-GTGAGATAGGgc
gi|15 : CT-ATTCTAT-ACATG-AGCACG-TG-ACTCGATAAGTCG----GGAC
gi|14 : TTTTTAAAAAAAA----CTTC--AAAG-GAT------------CCTGTT-TTACAA-ACAA---TACG---AAACACAAGGTCCTGTCC-TCCCCTAATGTACGC-AATCCC-C-GGCGA
gi|1 : CAAGCAACCCCGATAACCTATTTTACTTTGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAG-GGACCGGGAAGAATAAAAT-GAGTCTCC-ATAAAAAGTTTTAGGTAAAAAAAGCTGGCTTACCTGAAGATCGAA-ATTCA-ACTTTAACACGAGCGTCGAGCAAACAAATTAGCCCAGAA--------------CAT----TGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTTA-CGG-TCACAAAAATCCA-GGACCA-CTGAAACAAC--TATCGTA-CACTAAAATAACACTCATA-AACATGCAATTTCC-TCTATTC-TGTCCACAAATACATCTTGTGAAAACCAACGT--ACACATGCC-CCCCCCCTTC---CGCCCCAG-CC-GTGATGCATCTGT-GGACGGAA-AA--ATGCTAGTGACTACTGC-CACGCAGC-AAACGCAGTCAGtaga
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TCTGCAAGCAAATGCAGTCAGTCCTAGAAGTAGGTCTGAGAACTGTTATGGTCTTTTCGCTGGAAAGTCACCATCCAGAATTGCAATTTAGGTATATCCACAACAATCCCCACAGAAACGGAGAGTTGACTATTCCGATTGAAACGTGTTTTTAGTGATGCCGGCGTTTTATGTGACTACACGGGAATAAATAGTACGCTTGATGTTTTTTCTGAATTCTTAATTCAAAATTGTTGGTTAATATTTTTTCTCAATTTGGTTATATTTACTATCTGCGCTCAAATGCGCATTAATTATGATTTAAACAACATATAATCATATTATTACATTTCATTTATCTCCCAAGCTTGCCTGTTAGAATAATTTATCTTCCCTGTACATACATACAGTATTCTACTGAAAAAAGTACGGTCTGTTGAAAATATATGGTTACAAATTTTTTCAACGATTTTAAATTTTCGAGTTTATTTTTAATCCTATTGAATTCGTAGAATGAAGCTTAATGGGAGAAAAAGAATCGATCATGAGTCAATCCAATTGGGAATATGGAAATCTACCCTCGGGTTGGAAATTTCGGTCAGGGGCGGAGGCTGCCTTGGGTGAGATTTCCCTATTCCCACATGGATACTCATGATGGATTCTTATAATCCTTTGTTCCTTGAATGCTTCATATAGA
Unaligned ( gi|7 ): GTTGAAAACAAAAATGGTAAACATTTAACGATTTGCTCAACCATCTTAATAAATTTTTAGGAGTTTACTATATATGTGATAATTAGATAGAGATGAACTTTAATGGGAGAACGAACTAATCCTAGTCCATAGCCAAAAGTCCATCCCTGTGGAATAGGAAAAATCTCAGCCCCCCGGTGGGAAAGTCTTCCGGTGAGCGGACTCGGCAGCCTCTTCTGACGAAATACCTCCAACCCCTTGCCGGTGAAGTTTCGCCTATCCCCACATGGCATGAGCTCATTCAGGATTTATA
Unaligned ( gi|8 ): ATAAAATTTCGATTCTTTAATTTCTGTTAAGTTCTTTCTTTGTAAACAGCAAACAATGAATAAATTTGTTTGTATATATATAGATATATATTCTCAATTTTGCTATATAATTCTTTTCTACTTGGCTAGAAAGACGTATTAATTTATGATTTAAAAAAAATTAATGTATTTAAATTTCTCCCAGTAACTTGTTAGAAATAATTTATTTCCGCGGATTATACATACATACACTATGTTAGTATGTACTTGAAAATTATCTGTGAAAAATATTTCTTA
Unaligned ( gi|9 ): TTTTCCCCCTACTTGCTAAAATATTTAATCGCGGTGCATACATACAGTTTGTATTTAAATTTACGATCATCTAAAAAATAATCTTAAAATTTTCAATAATTTAAATTTTCGGATTTATTCTTCTAGTGAACTTACGTAGAATGAAACTTTTTAATGTAAAAAATAATGCATATGAGTCATCCATGTTTGAATTAGGACACTCACCTCGAGGTTGGATATTTTGGTCAAGGAACTCGGCTGCCT
Unaligned ( gi|11 ): ATGGGAGAAAAATGCCTCATCATGAGTTCATTAGTTTAAAGATGAAGGGGTGGGGATATTTTTGGTCAGGGACTGAACAAACTATCCCAGAAGAAAATTTTCCACCCCCCAACAAAAATACTCGTGTTGAATTCTTATACCCTGTTC
Unaligned ( gi|12 ): CTTATTGGGAGAAAAAAATCTTTAATCATGAGTAGATTGCTGTGGGATAAGGGAGGTCTCATCCTTGGGGAAGAAGATTTTGGTCAGGGTGAGAGTTCCCCATCCCACATAGTTTTTCATGGTGGATTCTTACAATGCTT
Unaligned ( gi|13 ): TTTCAGTTTCTCCCTACTTGCTGTAGAAATCATTTATTTCCGCGGTACATACATACAGTATGTACTGTAAAATTACGATCTGTTTGAAAAATAATCTTAAAATTTTCAATTTTAAACC
Alignments
lowQualScore : 22 1 22 1111 11 22222 33 22 111 1 1 11 11 1 11 11 11 222222222 11 1 111 4444 2 222 999999999999999999 22222 1 1 1 1 1111 1 1 1 1 11 1 222 1 1 1 2 2 1
lowQualScore : 6 6 6 6 8 8 8 11 6 88 9 6 6 6 6 4444 11 0 8 77777 44 99 2 66 6 6 7 888 1 5 6 8 8 0 0 33 33 0 33 33 33 3 2 222222222 22 0 0 7 1 7 7 6 11 333 1 1 666 1 88 2222 1 3 999 3 444444444444444444 33333 3 3 6 3 0 3 6 7 7777 3 2 7 3 3 44 7 7 3 333 6 7 6 6 7 3 3 0 3 0 5
lowQualScore : . . . . . . . .. . .. . . . . . .... .. . . ..... .. .. . .. . . . ... . . . . . . . .. .. . .. .. .. . . ......... .. . . . . . . . .. ... . . ... . .. .... . . ... . .................. ..... . . . . . . . . .... . . . . . .. . . . ... . . . . . . . . . . .
lowQualScore : 7 7 7 7 0 0 0 66 0 44 8 7 7 7 7 2222 00 8 0 77777 33 22 5 88 7 7 3 333 0 6 0 0 0 0 0 88 88 0 88 88 88 2 5 888888888 55 2 0 3 0 3 3 7 77 000 0 0 000 0 33 7777 0 3 000 7 333333333333333333 00000 3 3 7 3 7 3 7 3 3333 3 0 3 3 3 33 3 3 3 333 7 3 7 7 3 3 3 0 0 0 5
consensus : TTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCT-CGTT-GAGATCCGCCTATTCT-CACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TA--AAAAAAAACTT-CAAAAGAAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCTCCCCGAATGTACGCAAAT-CCC-CGGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACAAT-ACGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATANAAAGTTTTAGNTAAAAAAG-CTGGCTTACCTGAAGATCGAAAATTCACA--TTAACACGAGCGTC-AGCAAAC--ATTAGCCCAGAACATTA-GGC-----CAT-----GTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGGGTCACAAAAATCC-AGGATC-ACTGGAACAA-CCTATCGT-ACACTGAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGCTCNCGCAGCAAAACGCAGTCAG
Reference ( family-433 ) : TTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCT-CGTT-GAGATCCGCCTATTCT-CACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TT--AAAAAAAACTTTCAAAAGAAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGNCCCTGTCCTCCCCGAATGTACGCAAAT-CCC-CGGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACAATAACGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTNTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATGNAANNNTNTAGNTAAAAACGNCTGGCTTACCNGAAGATCGAAAANTCACNCTTTAACACGAGCNTCGAGCAAACAAATTAGCCCAGAACATTA-GGC-----CAT----TGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGGGTCACAAAAATCC-AGGACC-ACTGGAACAA-CCTATCGT-ACACTGAAATAACACTCATA-AACATGCAATTT-CCTCTATT-NTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCGGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGC-CACGCAGC-AAACGCAGTCAG
gi|1 : A-GCAACCCCGATAACCTATTTTACTTTGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAG-GGACCGGGAAGAATAAAAT-GAGTCTCC-ATAAAAAGTTTTAGGTAAAAAAAGCTGGCTTACCTGAAGATCGAAA-TTCA-ACTTTAACACGAGCGTCGAGCAAACAAATTAGCCCAGAACATT------------------GTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGG-TCACAAAAATCC-AGGACC-ACTGAAACAA-C-TATCGT-ACACTAAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCACAAATACATCTTGTGAAAACCAACGT--ACACATGCC-CCCCCCCTTC---CG-CCCCAGCC-GTGATGCATCTGT-GGACGG-A-AAA-ATGCTAGTGACTACTGC-CACGCAGC-AAACGCAGTCAG
gi|10 : caTTCTCCCATAACT-ACCCCATGT-GAGATAG-TT-TCTCCAATTGT-GAGAGAAG-GCCT-CGT---GGATCCGCCTCATCT-CAC-T-GAGCACGCT-GACTCGATAAGTCG----GGACTAC--TTT--AGGGAAA-TCCGTCTGCTATTTT-AA--AAAAAAAACTT-CAAAAGAAT--ATGGCCACCTCCCGTTA-TACGA-ACAA-TTTACGA--AAACACAtcactagaaagtaggtctgagaacattgttaagggtctttttcgctggaagtaccatccagaatccaatttgaggttaatatccacaacaatccttcaaagaaacggagacgtttgattccgattaaacgttgttagtgatgcggtttttgtggactacacgaataaaatagtacgctgtgattttttcttgaattcttcataaaatttcgatttttctttattctattgagttgtttctttgtaaacagcaaaaatgaaataaaatttgttgattaatgtttttttctttcaatttcgttattattttacaattactttcaaaggcgcattaatttaatttgattaaaaaaaacaaacattaaaatatttaattttctccctacttgctgtagaaaatcatttatttccgggtacatacatacagtatgtactgaaaattacgatctgttttgaaaataagttaaaaattttcaattttcaacaatttaaattttttagttttatttctatctagtgaaattacgtagaaataacttaatgggaaaaaaatccatcatgagtcaatccatgtggaattaggaaatctcacccctcgggttggaaatttcggtcagggaaacctcggggcaaagccgtcggtcccctgggacccggaaaattccaaaaccctccttaatcacatgtatacctccattgatggaattcttatattctcacgtttggaaaactcttgtagat
gi|14 : ttTTT-TT--AAAAAAAACTT-CAAAGGA-------------TCCTGTT-TTACAA-ACAA-T--ACG---AAACACAAGGTCCTGTCCTCCCCTAATGTACGC-AAT-CCC-CGGCGAgc
gi|15 : CTATTCTATACAT-GAGCACG-T-GACTCGATAAGTCG----GGACtaga
gi|16 : TTCTCCCATTACT-ACCC-ATGT-GAGATAGG
gi|2 : TTCTCCCATTACT-ACCC-ATTT-GAGATAGGTTGTTTCTCAT--T-GAGAAAAAAGCCTGCGT--GAGATCCGCCTAT-CT-TACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TTTTACAAAAAACTC---AAAGAAT--ATGGCCATCTCCCGTT--TACGA-ACAAATTTACG---AAACACAAGGCCCTGTCCTCCCGAAGTATACGCAAAT-CCC-CAGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGAC-ATTATG-TACAGGCAACCCCGATAATCTATTTTACTTGGCGG-TTGTTACAAACAAC-AAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATACAAAGTTTTAGCTAAAAAAGCTTGGCTTACCTGAAGATCGAATATTCACA---TAACACGAGCGTC-AGCAAAC--ATTAGTCCAGAAAATGACGGCAAAGACATACAATGTCCCAGATTCCCTCCTTGTTAAAAGCTGTATGTTAACGGGTCACAAAAATCCAAGGATCAACT-GAACAACCCTATCGTAACACT-AAATAACACTCATATAACATGCAATTTCCCTCTATTCCTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCCACCCCCCCTCCTGTCGCCCCC-ACCGGTGATGCATCTGTGGGACGGAACAAATATGCTAGTACTTACTGCTCCTGCAGCAAAACGC-GTCAG
gi|4 : TTCTCCTATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAG---CCT-CGC--GAGACCCACCTAT-CT-CACAT-GAGCACG-T-GACTCGATAAGCCG----GGACTAC--TTTTAGGGGAAA-TTCGTCTGCTATTTT-T----AAAAAAACTT-CAAAGGAAT--ATGGCCACCTTCCGTT-TTACTA-ACGA-T--ACG---AAACACAAGTCCCTGTCCTCCCTGAATGTACCCAA-T-CCC-CGGCGAGTTC-AATGTCC-TATC--ACCAC--GTACA-ATTTTT--AT--CGCT--CAATGATACCCCAGA-------ATTACA---------------CCATTTTACTTGGCGG-TTGTTATAAAAAACAAAAATCCTCGGATCGATGAAAGATGGTTTGTAAGTGGACCGGAAAGAATAAAATTGAGTCTCCCATGTAACTATATAGTTAAAAACG-CTGGCTTACCAGAAGATCGAAAAATCAC---TTAACACGAGCCTC-AGCAAA--------------ACATTA-GGC-----TAT--------CCAGATTCCCTTC-------AAG-TGTATGTT-ACAGGTCACAAAAATTC-AGGATC-ACTGGA-CAA-CC-ATCGT-ACACTGAA-TAACACTCATA-AACATGCAATTT-CCTCTATT-GTGTCAGCAAATACATCTTGTGAAAACCAACGTACAC-----CC-CTCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGAC
gi|5 : TTCTCCCATTACTTACCC-ATGTTGAGATAG--T-TTTCCCAT-GTTGAGAAAG---CCT-CTTTTGAGATCCGCCTATCTC-CACAT-GAGCACG-T-GAC-CGATAAGTCGTAGGAGACTAC--TTTTAGGGGAAAATCCGTCTGCTATTTT-TA--ATAAAAAACTT-CAAAAGAATTGATGGCCACCTCCCGTTAT-ACGATACAA-TTTACGCGAAAACACAGGTCCCTGTCCTCCCCGAATGTACACCAAT-CCCACAGCGAGCTC-GATGTCCCTATCTGGCCACAATTACGCATCTTTCTATTACGCTTCCAATGAGACCCCAGACAATAACGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGGTTTGTTACAAACAA
gi|6 : ctTTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCTCCGTT-GAGATCCGCCTATTCT-CACATGGAGCACG-TGGACTCGATAAGTCG----GGACTACATTTTTAGGGGAAA-TCCGTCTGCTATTTTAAA--AAAAAAAACTTT--AAAGAAT--AT-GCCACCTCCCGTTA-TACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCCTCCCGAATGTACGCAATTCCCC-CAGCGAGCTTGGATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATG-GACCCCA-ACA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCTGCAAGCAAATGCAGTCAGTCCTAGAAGTAGGTCTGAGAACTGTTATGGTCTTTTCGCTGGAAAGTCACCATCCAGAATTGCAATTTAGGTATATCCACAACAATCCCCACAGAAACGGAGAGTTGACTATTCCGATTGAAACGTGTTTTTAGTGATGCCGGCGTTTTATGTGACTACACGGGAATAAATAGTACGCTTGATGTTTTTTCTGAATTCTTAATTCAAAATTGTTGGTTAATATTTTTTCTCAATTTGGTTATATTTACTATCTGCGCTCAAATGCGCATTAATTATGATTTAAACAACATATAATCATATTATTACATTTCATTTATCTCCCAAGCTTGCCTGTTAGAATAATTTATCTTCCCTGTACATACATACAGTATTCTACTGAAAAAAGTACGGTCTGTTGAAAATATATGGTTACAAATTTTTTCAACGATTTTAAATTTTCGAGTTTATTTTTAATCCTATTGAATTCGTAGAATGAAGCTTAATGGGAGAAAAAGAATCGATCATGAGTCAATCCAATTGGGAATATGGAAATCTACCCTCGGGTTGGAAATTTCGGTCAGGGGCGGAGGCTGCCTTGGGTGAGATTTCCCTATTCCCACATGGATACTCATGATGGATTCTTATAATCCTTTGTTCCTTGAATGCTTCATATAGA
Unaligned ( gi|7 ): GTTGAAAACAAAAATGGTAAACATTTAACGATTTGCTCAACCATCTTAATAAATTTTTAGGAGTTTACTATATATGTGATAATTAGATAGAGATGAACTTTAATGGGAGAACGAACTAATCCTAGTCCATAGCCAAAAGTCCATCCCTGTGGAATAGGAAAAATCTCAGCCCCCCGGTGGGAAAGTCTTCCGGTGAGCGGACTCGGCAGCCTCTTCTGACGAAATACCTCCAACCCCTTGCCGGTGAAGTTTCGCCTATCCCCACATGGCATGAGCTCATTCAGGATTTATA
Unaligned ( gi|8 ): ATAAAATTTCGATTCTTTAATTTCTGTTAAGTTCTTTCTTTGTAAACAGCAAACAATGAATAAATTTGTTTGTATATATATAGATATATATTCTCAATTTTGCTATATAATTCTTTTCTACTTGGCTAGAAAGACGTATTAATTTATGATTTAAAAAAAATTAATGTATTTAAATTTCTCCCAGTAACTTGTTAGAAATAATTTATTTCCGCGGATTATACATACATACACTATGTTAGTATGTACTTGAAAATTATCTGTGAAAAATATTTCTTA
Unaligned ( gi|9 ): TTTTCCCCCTACTTGCTAAAATATTTAATCGCGGTGCATACATACAGTTTGTATTTAAATTTACGATCATCTAAAAAATAATCTTAAAATTTTCAATAATTTAAATTTTCGGATTTATTCTTCTAGTGAACTTACGTAGAATGAAACTTTTTAATGTAAAAAATAATGCATATGAGTCATCCATGTTTGAATTAGGACACTCACCTCGAGGTTGGATATTTTGGTCAAGGAACTCGGCTGCCT
Unaligned ( gi|11 ): ATGGGAGAAAAATGCCTCATCATGAGTTCATTAGTTTAAAGATGAAGGGGTGGGGATATTTTTGGTCAGGGACTGAACAAACTATCCCAGAAGAAAATTTTCCACCCCCCAACAAAAATACTCGTGTTGAATTCTTATACCCTGTTC
Unaligned ( gi|12 ): CTTATTGGGAGAAAAAAATCTTTAATCATGAGTAGATTGCTGTGGGATAAGGGAGGTCTCATCCTTGGGGAAGAAGATTTTGGTCAGGGTGAGAGTTCCCCATCCCACATAGTTTTTCATGGTGGATTCTTACAATGCTT
Unaligned ( gi|13 ): TTTCAGTTTCTCCCTACTTGCTGTAGAAATCATTTATTTCCGCGGTACATACATACAGTATGTACTGTAAAATTACGATCTGTTTGAAAAATAATCTTAAAATTTTCAATTTTAAACC
Alignments
lowQualScore : 22 1 22 1111 11 11111 22 111 1 1 1 11 11 1 11 11 11 2222222 11 1 1 1 2222 1 22222 9999999999999999999 22222 1 1 1 1 1111 1 11 1 1 1 1 222 1 1 1 1 1
lowQualScore : 6 6 6 6 8 8 8 11 6 88 9 6 6 6 6 4444 11 0 8 99999 44 99 2 66 6 999 888 3 0 8 8 0 0 33 33 0 33 33 33 3 2 2 5555555 22 0 0 7 7 7 6 1 1 3 3 7 6666 3 33333 3 0000000000000000000 33333 3 3 6 3 3 999 7777 3 99 3 3 3 7 7 3 333 6 6 6 6 7 3 3 5 1 5 5
lowQualScore : . . . . . . . .. . .. . . . . . .... .. . . ..... .. .. . .. . ... ... . . . . . . .. .. . .. .. .. . . . ....... .. . . . . . . . . . . . .... . ..... . ................... ..... . . . . . ... .... . .. . . . . . . ... . . . . . . . . . . .
lowQualScore : 7 7 7 7 0 0 0 66 0 44 8 7 7 7 7 2222 00 8 0 00000 22 22 5 88 7 000 333 2 4 0 0 0 0 88 88 0 88 88 88 2 5 5 3333333 55 2 0 3 3 3 7 0 0 3 3 3 7777 3 00000 7 7777777777777777777 00000 3 3 7 3 3 333 3333 3 33 3 3 3 3 3 3 333 7 7 7 7 3 3 3 5 0 5 5
consensus : TTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCT-CGTT-GAGATCCGCCTATTCT-CACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCTCCCCGAATGTACGCNAAT-CCC-CGGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACA-TA-CGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATANAAAGTTTTAGNTAAAAAA-GC-TGGCTTACCTGAAGATCGAAAATTCA-C-TTAACACGAGCGTC-AGCAAACA--TTAGCCCAGAACATTA-GGC-----C-----ATGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGGGTCACAAAAATCC-AGGATC-ACTGGAACAA-CCTATCGT-ACACTGAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGCTCNCGCAGCAAAACGCAGTCAG
Reference ( family-433 ) : TTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCT-CGTT-GAGATCCGCCTATTCT-CACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCTCCCCGAATGTACGCAAAT-CCC-CGGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACAATA-CGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATANAAAGTTTTAGNTAAAAAA-GC-TGGCTTACCTGAAGATCGAAAATTCA-CATTAACACGAGCGTC-AGCAAACA--TTAGCCCAGAACATTA-GGC-----C-----ATGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGGGTCACAAAAATCC-AGGATC-ACTGGAACAA-CCTATCGT-ACACTGAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGCTCNCGCAGCAAAACGCAGTCAG
gi|1 : A-GCAACCCCGATAACCTATTTTACTTTGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAG-GGACCGGGAAGAATAAAAT-GAGTCTCC-ATAAAAAGTTTTAGGTAAAAAAAGC-TGGCTTACCTGAAGATCGAAA-TTCAACTTTAACACGAGCGTCGAGCAAACAAATTAGCCCAGAACATT------------------GTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGG-TCACAAAAATCC-AGGACC-ACTGAAACAA-C-TATCGT-ACACTAAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCACAAATACATCTTGTGAAAACCAACGT--ACACATGCC-CCCCCCCTTC---CG-CCCCAGCC-GTGATGCATCTGT-GGACGG-A-AAA-ATGCTAGTGACTACTGC-CACGCAGC-AAACGCAGTCAG
gi|10 : caTTCTCCCATAACT-ACCCCATGT-GAGATAG-TT-TCTCCAATTGT-GAGAGAAG-GCCT-CGT---GGATCCGCCTCATCT-CAC-T-GAGCACGCT-GACTCGATAAGTCG----GGACTAC--TTT--AGGGAAA-TCCGTCTGCTATTTT-AA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTA-TACGA-ACAA-TTTACGA--AAACACAtcactagaaagtaggtctgagaacattgttaagggtctttttcgctggaagtaccatccagaatccaatttgaggttaatatccacaacaatccttcaaagaaacggagacgtttgattccgattaaacgttgttagtgatgcggtttttgtggactacacgaataaaatagtacgctgtgattttttcttgaattcttcataaaatttcgatttttctttattctattgagttgtttctttgtaaacagcaaaaatgaaataaaatttgttgattaatgtttttttctttcaatttcgttattattttacaattactttcaaaggcgcattaatttaatttgattaaaaaaaacaaacattaaaatatttaattttctccctacttgctgtagaaaatcatttatttccgggtacatacatacagtatgtactgaaaattacgatctgttttgaaaataagttaaaaattttcaattttcaacaatttaaattttttagttttatttctatctagtgaaattacgtagaaataacttaatgggaaaaaaatccatcatgagtcaatccatgtggaattaggaaatctcacccctcgggttggaaatttcggtcagggaaacctcggggcaaagccgtcggtcccctgggacccggaaaattccaaaaccctccttaatcacatgtatacctccattgatggaattcttatattctcacgtttggaaaactcttgtagat
gi|14 : ttTTTT-TA--AAAAAAA-CTTCAAAGGA-------------TCCTGTT-TTACAA-ACAA-T--ACG---AAACACAAGGTCCTGTCCTCCCCTAATGTACGC-AAT-CCC-CGGCGAgc
gi|15 : CTATTCTATACAT-GAGCACG-T-GACTCGATAAGTCG----GGACtaga
gi|16 : TTCTCCCATTACT-ACCC-ATGT-GAGATAGG
gi|2 : TTCTCCCATTACT-ACCC-ATTT-GAGATAGGTTGTTTCTCAT--T-GAGAAAAAAGCCTGCGT--GAGATCCGCCTAT-CT-TACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TTTTACAAAAAACTC--AAAGAAT--ATGGCCATCTCCCGTT--TACGA-ACAAATTTACG---AAACACAAGGCCCTGTCCTCCCGAAGTATACGCAAAT-CCC-CAGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACATTA-TG-TACAGGCAACCCCGATAATCTATTTTACTTGGCGG-TTGTTACAAACAAC-AAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATACAAAGTTTTAGCTAAAAAA-GCTTGGCTTACCTGAAGATCGAATATTCA-CA-TAACACGAGCGTC-AGCAAACA--TTAGTCCAGAAAATGACGGCAAAGACATACAATGTCCCAGATTCCCTCCTTGTTAAAAGCTGTATGTTAACGGGTCACAAAAATCCAAGGATCAACT-GAACAACCCTATCGTAACACT-AAATAACACTCATATAACATGCAATTTCCCTCTATTCCTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCCACCCCCCCTCCTGTCGCCCCCA-CCGGTGATGCATCTGTGGGACGGAACAAATATGCTAGTACTTACTGCTCCTGCAGCAAAACGC-GTCAG
gi|4 : TTCTCCTATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAG---CCT-CGC--GAGACCCACCTAT-CT-CACAT-GAGCACG-T-GACTCGATAAGCCG----GGACTAC--TTTTAGGGGAAA-TTCGTCTGCTATTTT-T----AAAAAAACTTCAAAGGAAT--ATGGCCACCTTCCGTT-TTACTA-ACGA---TACG---AAACACAAGTCCCTGTCCTCCCTGAATGTAC-CCAAT-CCC-CGGCGAGTTC-AATGTCC-TATC--ACCAC--GTACA-ATTTTT--AT--CGCT--CAATGATACCCCAGA-------ATTACA---------------CCATTTTACTTGGCGG-TTGTTATAAAAAACAAAAATCCTCGGATCGATGAAAGATGGTTTGTAAGTGGACCGGAAAGAATAAAATTGAGTCTCCCATGTAACTATATAGTTAAAAAC-GC-TGGCTTACCAGAAGATCGAAAAATCA-C-TTAACACGAGCCTC-AGCAA--------------AACATTA-GGC-----T-----AT---CCAGATTCCCTTC-------AAG-TGTATGTT-ACAGGTCACAAAAATTC-AGGATC-ACTGG-ACAA-CC-ATCGT-ACACTG-AATAACACTCATA-AACATGCAATTT-CCTCTATT-GTGTCAGCAAATACATCTTGTGAAAACCAACGTACAC-----CC-CTCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGAC
gi|5 : TTCTCCCATTACTTACCC-ATGTTGAGATAG--T-TTTCCCAT-GTTGAGAAAG---CCT-CTTTTGAGATCCGCCTATCTC-CACAT-GAGCACG-T-GAC-CGATAAGTCGTAGGAGACTAC--TTTTAGGGGAAAATCCGTCTGCTATTTT-TA--ATAAAAAACTTCAAAAGAATTGATGGCCACCTCCCGTTAT-ACGATACAA-TTTACGCGAAAACACAGGTCCCTGTCCTCCCCGAATGTACACCAAT-CCCACAGCGAGCTC-GATGTCCCTATCTGGCCACAATTACGCATCTTTCTATTACGCTTCCAATGAGACCCCAGACAATAACGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGGTTTGTTACAAACAA
gi|6 : ctTTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCTCCGTT-GAGATCCGCCTATTCT-CACATGGAGCACG-TGGACTCGATAAGTCG----GGACTACATTTTTAGGGGAAA-TCCGTCTGCTATTTTAAA--AAAAAAAACTTT-AAAGAAT--AT-GCCACCTCCCGTTA-TACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCCTCCCGAATGTACGCAATTCCCC-CAGCGAGCTTGGATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATG-GACCCCA-ACA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCTGCAAGCAAATGCAGTCAGTCCTAGAAGTAGGTCTGAGAACTGTTATGGTCTTTTCGCTGGAAAGTCACCATCCAGAATTGCAATTTAGGTATATCCACAACAATCCCCACAGAAACGGAGAGTTGACTATTCCGATTGAAACGTGTTTTTAGTGATGCCGGCGTTTTATGTGACTACACGGGAATAAATAGTACGCTTGATGTTTTTTCTGAATTCTTAATTCAAAATTGTTGGTTAATATTTTTTCTCAATTTGGTTATATTTACTATCTGCGCTCAAATGCGCATTAATTATGATTTAAACAACATATAATCATATTATTACATTTCATTTATCTCCCAAGCTTGCCTGTTAGAATAATTTATCTTCCCTGTACATACATACAGTATTCTACTGAAAAAAGTACGGTCTGTTGAAAATATATGGTTACAAATTTTTTCAACGATTTTAAATTTTCGAGTTTATTTTTAATCCTATTGAATTCGTAGAATGAAGCTTAATGGGAGAAAAAGAATCGATCATGAGTCAATCCAATTGGGAATATGGAAATCTACCCTCGGGTTGGAAATTTCGGTCAGGGGCGGAGGCTGCCTTGGGTGAGATTTCCCTATTCCCACATGGATACTCATGATGGATTCTTATAATCCTTTGTTCCTTGAATGCTTCATATAGA
Unaligned ( gi|7 ): GTTGAAAACAAAAATGGTAAACATTTAACGATTTGCTCAACCATCTTAATAAATTTTTAGGAGTTTACTATATATGTGATAATTAGATAGAGATGAACTTTAATGGGAGAACGAACTAATCCTAGTCCATAGCCAAAAGTCCATCCCTGTGGAATAGGAAAAATCTCAGCCCCCCGGTGGGAAAGTCTTCCGGTGAGCGGACTCGGCAGCCTCTTCTGACGAAATACCTCCAACCCCTTGCCGGTGAAGTTTCGCCTATCCCCACATGGCATGAGCTCATTCAGGATTTATA
Unaligned ( gi|8 ): ATAAAATTTCGATTCTTTAATTTCTGTTAAGTTCTTTCTTTGTAAACAGCAAACAATGAATAAATTTGTTTGTATATATATAGATATATATTCTCAATTTTGCTATATAATTCTTTTCTACTTGGCTAGAAAGACGTATTAATTTATGATTTAAAAAAAATTAATGTATTTAAATTTCTCCCAGTAACTTGTTAGAAATAATTTATTTCCGCGGATTATACATACATACACTATGTTAGTATGTACTTGAAAATTATCTGTGAAAAATATTTCTTA
Unaligned ( gi|9 ): TTTTCCCCCTACTTGCTAAAATATTTAATCGCGGTGCATACATACAGTTTGTATTTAAATTTACGATCATCTAAAAAATAATCTTAAAATTTTCAATAATTTAAATTTTCGGATTTATTCTTCTAGTGAACTTACGTAGAATGAAACTTTTTAATGTAAAAAATAATGCATATGAGTCATCCATGTTTGAATTAGGACACTCACCTCGAGGTTGGATATTTTGGTCAAGGAACTCGGCTGCCT
Unaligned ( gi|11 ): ATGGGAGAAAAATGCCTCATCATGAGTTCATTAGTTTAAAGATGAAGGGGTGGGGATATTTTTGGTCAGGGACTGAACAAACTATCCCAGAAGAAAATTTTCCACCCCCCAACAAAAATACTCGTGTTGAATTCTTATACCCTGTTC
Unaligned ( gi|12 ): CTTATTGGGAGAAAAAAATCTTTAATCATGAGTAGATTGCTGTGGGATAAGGGAGGTCTCATCCTTGGGGAAGAAGATTTTGGTCAGGGTGAGAGTTCCCCATCCCACATAGTTTTTCATGGTGGATTCTTACAATGCTT
Unaligned ( gi|13 ): TTTCAGTTTCTCCCTACTTGCTGTAGAAATCATTTATTTCCGCGGTACATACATACAGTATGTACTGTAAAATTACGATCTGTTTGAAAAATAATCTTAAAATTTTCAATTTTAAACC
Alignments
lowQualScore : 22 1 22 1111 11 11111 22 111 1 1 11 11 1 11 11 11 3333333 11 1 1 1 11 1 22222 9999999999999999999 22222 1 1 1 1 1111 1 11 1 1 1 1 222 1 1 1 1 1
lowQualScore : 6 6 6 6 8 8 8 11 6 88 9 6 6 6 6 4444 11 0 8 99999 44 99 2 66 6 999 888 3 8 8 8 0 0 33 33 0 33 33 33 3 2 2 7777777 22 0 0 7 7 7 6 1 1 3 3 7 88 3 33333 3 0000000000000000000 33333 3 3 6 3 3 999 7777 3 99 3 3 3 7 7 3 333 6 6 6 6 7 3 3 5 1 5 5
lowQualScore : . . . . . . . .. . .. . . . . . .... .. . . ..... .. .. . .. . ... ... . . . . . . .. .. . .. .. .. . . . ....... .. . . . . . . . . . . . .. . ..... . ................... ..... . . . . . ... .... . .. . . . . . . ... . . . . . . . . . . .
lowQualScore : 7 7 7 7 0 0 0 66 0 44 8 7 7 7 7 2222 00 8 0 00000 22 22 5 88 7 000 333 2 8 0 0 0 0 88 88 0 88 88 88 2 5 5 7777777 55 2 0 3 3 3 7 0 0 3 3 3 33 3 00000 7 7777777777777777777 00000 3 3 7 3 3 333 3333 3 33 3 3 3 3 3 3 333 7 7 7 7 3 3 3 5 0 5 5
consensus : TTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCT-CGTT-GAGATCCGCCTATTCT-CACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCTCCCCGAATGTACGCNAAT-CCC-CGGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACA-TA-CGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATANAAAGTTTTAGNTAAAAAA-GC-TGGCTTACCTGAAGATCGAAAATTCA--CTTAACACGAGCGTC-AGCAAACA--TTAGCCCAGAACATTA-GGC-----C-----ATGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGGGTCACAAAAATCC-AGGATC-ACTGGAACAA-CCTATCGT-ACACTGAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGCTCNCGCAGCAAAACGCAGTCAG
Reference ( family-433 ) : TTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCT-CGTT-GAGATCCGCCTATTCT-CACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCTCCCCGAATGTACGCNAAT-CCC-CGGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACA-TA-CGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATANAAAGTTTTAGNTAAAAAA-GC-TGGCTTACCTGAAGATCGAAAATTCA--CTTAACACGAGCGTC-AGCAAACA--TTAGCCCAGAACATTA-GGC-----C-----ATGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGGGTCACAAAAATCC-AGGATC-ACTGGAACAA-CCTATCGT-ACACTGAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGCTCNCGCAGCAAAACGCAGTCAG
gi|1 : A-GCAACCCCGATAACCTATTTTACTTTGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAG-GGACCGGGAAGAATAAAAT-GAGTCTCC-ATAAAAAGTTTTAGGTAAAAAAAGC-TGGCTTACCTGAAGATCGAAA-TTCAACTTTAACACGAGCGTCGAGCAAACAAATTAGCCCAGAACATT------------------GTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGG-TCACAAAAATCC-AGGACC-ACTGAAACAA-C-TATCGT-ACACTAAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCACAAATACATCTTGTGAAAACCAACGT--ACACATGCC-CCCCCCCTTC---CG-CCCCAGCC-GTGATGCATCTGT-GGACGG-A-AAA-ATGCTAGTGACTACTGC-CACGCAGC-AAACGCAGTCAG
gi|10 : caTTCTCCCATAACT-ACCCCATGT-GAGATAG-TT-TCTCCAATTGT-GAGAGAAG-GCCT-CGT---GGATCCGCCTCATCT-CAC-T-GAGCACGCT-GACTCGATAAGTCG----GGACTAC--TTT--AGGGAAA-TCCGTCTGCTATTTT-AA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTA-TACGA-ACAA-TTTACGA--AAACACAtcactagaaagtaggtctgagaacattgttaagggtctttttcgctggaagtaccatccagaatccaatttgaggttaatatccacaacaatccttcaaagaaacggagacgtttgattccgattaaacgttgttagtgatgcggtttttgtggactacacgaataaaatagtacgctgtgattttttcttgaattcttcataaaatttcgatttttctttattctattgagttgtttctttgtaaacagcaaaaatgaaataaaatttgttgattaatgtttttttctttcaatttcgttattattttacaattactttcaaaggcgcattaatttaatttgattaaaaaaaacaaacattaaaatatttaattttctccctacttgctgtagaaaatcatttatttccgggtacatacatacagtatgtactgaaaattacgatctgttttgaaaataagttaaaaattttcaattttcaacaatttaaattttttagttttatttctatctagtgaaattacgtagaaataacttaatgggaaaaaaatccatcatgagtcaatccatgtggaattaggaaatctcacccctcgggttggaaatttcggtcagggaaacctcggggcaaagccgtcggtcccctgggacccggaaaattccaaaaccctccttaatcacatgtatacctccattgatggaattcttatattctcacgtttggaaaactcttgtagat
gi|14 : ttTTTT-TA--AAAAAAA-CTTCAAAGGA-------------TCCTGTT-TTACAA-ACAA-T--ACG---AAACACAAGGTCCTGTCCTCCCCTAATGTACGC-AAT-CCC-CGGCGAgc
gi|15 : CTATTCTATACAT-GAGCACG-T-GACTCGATAAGTCG----GGACtaga
gi|16 : TTCTCCCATTACT-ACCC-ATGT-GAGATAGG
gi|2 : TTCTCCCATTACT-ACCC-ATTT-GAGATAGGTTGTTTCTCAT--T-GAGAAAAAAGCCTGCGT--GAGATCCGCCTAT-CT-TACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TTTTACAAAAAACTC--AAAGAAT--ATGGCCATCTCCCGTT--TACGA-ACAAATTTACG---AAACACAAGGCCCTGTCCTCCCGAAGTATACGCAAAT-CCC-CAGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACATTA-TG-TACAGGCAACCCCGATAATCTATTTTACTTGGCGG-TTGTTACAAACAAC-AAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATACAAAGTTTTAGCTAAAAAA-GCTTGGCTTACCTGAAGATCGAATATTCA--CATAACACGAGCGTC-AGCAAACA--TTAGTCCAGAAAATGACGGCAAAGACATACAATGTCCCAGATTCCCTCCTTGTTAAAAGCTGTATGTTAACGGGTCACAAAAATCCAAGGATCAACT-GAACAACCCTATCGTAACACT-AAATAACACTCATATAACATGCAATTTCCCTCTATTCCTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCCACCCCCCCTCCTGTCGCCCCCA-CCGGTGATGCATCTGTGGGACGGAACAAATATGCTAGTACTTACTGCTCCTGCAGCAAAACGC-GTCAG
gi|4 : TTCTCCTATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAG---CCT-CGC--GAGACCCACCTAT-CT-CACAT-GAGCACG-T-GACTCGATAAGCCG----GGACTAC--TTTTAGGGGAAA-TTCGTCTGCTATTTT-T----AAAAAAACTTCAAAGGAAT--ATGGCCACCTTCCGTT-TTACTA-ACGA---TACG---AAACACAAGTCCCTGTCCTCCCTGAATGTAC-CCAAT-CCC-CGGCGAGTTC-AATGTCC-TATC--ACCAC--GTACA-ATTTTT--AT--CGCT--CAATGATACCCCAGA-------ATTACA---------------CCATTTTACTTGGCGG-TTGTTATAAAAAACAAAAATCCTCGGATCGATGAAAGATGGTTTGTAAGTGGACCGGAAAGAATAAAATTGAGTCTCCCATGTAACTATATAGTTAAAAAC-GC-TGGCTTACCAGAAGATCGAAAAATCA--CTTAACACGAGCCTC-AGCAA--------------AACATTA-GGC-----T-----AT---CCAGATTCCCTTC-------AAG-TGTATGTT-ACAGGTCACAAAAATTC-AGGATC-ACTGG-ACAA-CC-ATCGT-ACACTG-AATAACACTCATA-AACATGCAATTT-CCTCTATT-GTGTCAGCAAATACATCTTGTGAAAACCAACGTACAC-----CC-CTCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGAC
gi|5 : TTCTCCCATTACTTACCC-ATGTTGAGATAG--T-TTTCCCAT-GTTGAGAAAG---CCT-CTTTTGAGATCCGCCTATCTC-CACAT-GAGCACG-T-GAC-CGATAAGTCGTAGGAGACTAC--TTTTAGGGGAAAATCCGTCTGCTATTTT-TA--ATAAAAAACTTCAAAAGAATTGATGGCCACCTCCCGTTAT-ACGATACAA-TTTACGCGAAAACACAGGTCCCTGTCCTCCCCGAATGTACACCAAT-CCCACAGCGAGCTC-GATGTCCCTATCTGGCCACAATTACGCATCTTTCTATTACGCTTCCAATGAGACCCCAGACAATAACGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGGTTTGTTACAAACAA
gi|6 : ctTTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCTCCGTT-GAGATCCGCCTATTCT-CACATGGAGCACG-TGGACTCGATAAGTCG----GGACTACATTTTTAGGGGAAA-TCCGTCTGCTATTTTAAA--AAAAAAAACTTT-AAAGAAT--AT-GCCACCTCCCGTTA-TACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCCTCCCGAATGTACGCAATTCCCC-CAGCGAGCTTGGATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATG-GACCCCA-ACA-
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCTGCAAGCAAATGCAGTCAGTCCTAGAAGTAGGTCTGAGAACTGTTATGGTCTTTTCGCTGGAAAGTCACCATCCAGAATTGCAATTTAGGTATATCCACAACAATCCCCACAGAAACGGAGAGTTGACTATTCCGATTGAAACGTGTTTTTAGTGATGCCGGCGTTTTATGTGACTACACGGGAATAAATAGTACGCTTGATGTTTTTTCTGAATTCTTAATTCAAAATTGTTGGTTAATATTTTTTCTCAATTTGGTTATATTTACTATCTGCGCTCAAATGCGCATTAATTATGATTTAAACAACATATAATCATATTATTACATTTCATTTATCTCCCAAGCTTGCCTGTTAGAATAATTTATCTTCCCTGTACATACATACAGTATTCTACTGAAAAAAGTACGGTCTGTTGAAAATATATGGTTACAAATTTTTTCAACGATTTTAAATTTTCGAGTTTATTTTTAATCCTATTGAATTCGTAGAATGAAGCTTAATGGGAGAAAAAGAATCGATCATGAGTCAATCCAATTGGGAATATGGAAATCTACCCTCGGGTTGGAAATTTCGGTCAGGGGCGGAGGCTGCCTTGGGTGAGATTTCCCTATTCCCACATGGATACTCATGATGGATTCTTATAATCCTTTGTTCCTTGAATGCTTCATATAGA
Unaligned ( gi|7 ): GTTGAAAACAAAAATGGTAAACATTTAACGATTTGCTCAACCATCTTAATAAATTTTTAGGAGTTTACTATATATGTGATAATTAGATAGAGATGAACTTTAATGGGAGAACGAACTAATCCTAGTCCATAGCCAAAAGTCCATCCCTGTGGAATAGGAAAAATCTCAGCCCCCCGGTGGGAAAGTCTTCCGGTGAGCGGACTCGGCAGCCTCTTCTGACGAAATACCTCCAACCCCTTGCCGGTGAAGTTTCGCCTATCCCCACATGGCATGAGCTCATTCAGGATTTATA
Unaligned ( gi|8 ): ATAAAATTTCGATTCTTTAATTTCTGTTAAGTTCTTTCTTTGTAAACAGCAAACAATGAATAAATTTGTTTGTATATATATAGATATATATTCTCAATTTTGCTATATAATTCTTTTCTACTTGGCTAGAAAGACGTATTAATTTATGATTTAAAAAAAATTAATGTATTTAAATTTCTCCCAGTAACTTGTTAGAAATAATTTATTTCCGCGGATTATACATACATACACTATGTTAGTATGTACTTGAAAATTATCTGTGAAAAATATTTCTTA
Unaligned ( gi|9 ): TTTTCCCCCTACTTGCTAAAATATTTAATCGCGGTGCATACATACAGTTTGTATTTAAATTTACGATCATCTAAAAAATAATCTTAAAATTTTCAATAATTTAAATTTTCGGATTTATTCTTCTAGTGAACTTACGTAGAATGAAACTTTTTAATGTAAAAAATAATGCATATGAGTCATCCATGTTTGAATTAGGACACTCACCTCGAGGTTGGATATTTTGGTCAAGGAACTCGGCTGCCT
Unaligned ( gi|11 ): ATGGGAGAAAAATGCCTCATCATGAGTTCATTAGTTTAAAGATGAAGGGGTGGGGATATTTTTGGTCAGGGACTGAACAAACTATCCCAGAAGAAAATTTTCCACCCCCCAACAAAAATACTCGTGTTGAATTCTTATACCCTGTTC
Unaligned ( gi|12 ): CTTATTGGGAGAAAAAAATCTTTAATCATGAGTAGATTGCTGTGGGATAAGGGAGGTCTCATCCTTGGGGAAGAAGATTTTGGTCAGGGTGAGAGTTCCCCATCCCACATAGTTTTTCATGGTGGATTCTTACAATGCTT
Unaligned ( gi|13 ): TTTCAGTTTCTCCCTACTTGCTGTAGAAATCATTTATTTCCGCGGTACATACATACAGTATGTACTGTAAAATTACGATCTGTTTGAAAAATAATCTTAAAATTTTCAATTTTAAACC
Alignments
lowQualScore : 22 1 22 1111 11 11111 22 111 1 1 11 11 1 11 11 11 3333333 11 1 1 1 11 1 22222 9999999999999999999 22222 1 1 1 1 1111 1 11 1 1 1 1 222 1 1 1 1 1
lowQualScore : 6 6 6 6 8 8 8 11 6 88 9 6 6 6 6 4444 11 0 8 99999 44 99 2 66 6 999 888 3 8 8 8 0 0 33 33 0 33 33 33 3 2 2 7777777 22 0 0 7 7 7 6 1 1 3 3 7 88 3 33333 3 0000000000000000000 33333 3 3 6 3 3 999 7777 3 99 3 3 3 7 7 3 333 6 6 6 6 7 3 3 5 1 5 5
lowQualScore : . . . . . . . .. . .. . . . . . .... .. . . ..... .. .. . .. . ... ... . . . . . . .. .. . .. .. .. . . . ....... .. . . . . . . . . . . . .. . ..... . ................... ..... . . . . . ... .... . .. . . . . . . ... . . . . . . . . . . .
lowQualScore : 7 7 7 7 0 0 0 66 0 44 8 7 7 7 7 2222 00 8 0 00000 22 22 5 88 7 000 333 2 8 0 0 0 0 88 88 0 88 88 88 2 5 5 7777777 55 2 0 3 3 3 7 0 0 3 3 3 33 3 00000 7 7777777777777777777 00000 3 3 7 3 3 333 3333 3 33 3 3 3 3 3 3 333 7 7 7 7 3 3 3 5 0 5 5
consensus : TTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCT-CGTT-GAGATCCGCCTATTCT-CACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCTCCCCGAATGTACGCNAAT-CCC-CGGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACA-TA-CGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATANAAAGTTTTAGNTAAAAAA-GC-TGGCTTACCTGAAGATCGAAAATTCA--CTTAACACGAGCGTC-AGCAAACA--TTAGCCCAGAACATTA-GGC-----C-----ATGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGGGTCACAAAAATCC-AGGATC-ACTGGAACAA-CCTATCGT-ACACTGAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGCTCNCGCAGCAAAACGCAGTCAG
Reference ( family-433 ) : TTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCT-CGTT-GAGATCCGCCTATTCT-CACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCTCCCCGAATGTACGCNAAT-CCC-CGGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACA-TA-CGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATANAAAGTTTTAGNTAAAAAA-GC-TGGCTTACCTGAAGATCGAAAATTCA--CTTAACACGAGCGTC-AGCAAACA--TTAGCCCAGAACATTA-GGC-----C-----ATGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGGGTCACAAAAATCC-AGGATC-ACTGGAACAA-CCTATCGT-ACACTGAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGCTCNCGCAGCAAAACGCAGTCAG
gi|1 : A-GCAACCCCGATAACCTATTTTACTTTGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAG-GGACCGGGAAGAATAAAAT-GAGTCTCC-ATAAAAAGTTTTAGGTAAAAAAAGC-TGGCTTACCTGAAGATCGAAA-TTCAACTTTAACACGAGCGTCGAGCAAACAAATTAGCCCAGAACATT------------------GTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGG-TCACAAAAATCC-AGGACC-ACTGAAACAA-C-TATCGT-ACACTAAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCACAAATACATCTTGTGAAAACCAACGT--ACACATGCC-CCCCCCCTTC---CG-CCCCAGCC-GTGATGCATCTGT-GGACGG-A-AAA-ATGCTAGTGACTACTGC-CACGCAGC-AAACGCAGTCAG
gi|10 : caTTCTCCCATAACT-ACCCCATGT-GAGATAG-TT-TCTCCAATTGT-GAGAGAAG-GCCT-CGT---GGATCCGCCTCATCT-CAC-T-GAGCACGCT-GACTCGATAAGTCG----GGACTAC--TTT--AGGGAAA-TCCGTCTGCTATTTT-AA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTA-TACGA-ACAA-TTTACGA--AAACACAtcactagaaagtaggtctgagaacattgttaagggtctttttcgctggaagtaccatccagaatccaatttgaggttaatatccacaacaatccttcaaagaaacggagacgtttgattccgattaaacgttgttagtgatgcggtttttgtggactacacgaataaaatagtacgctgtgattttttcttgaattcttcataaaatttcgatttttctttattctattgagttgtttctttgtaaacagcaaaaatgaaataaaatttgttgattaatgtttttttctttcaatttcgttattattttacaattactttcaaaggcgcattaatttaatttgattaaaaaaaacaaacattaaaatatttaattttctccctacttgctgtagaaaatcatttatttccgggtacatacatacagtatgtactgaaaattacgatctgttttgaaaataagttaaaaattttcaattttcaacaatttaaattttttagttttatttctatctagtgaaattacgtagaaataacttaatgggaaaaaaatccatcatgagtcaatccatgtggaattaggaaatctcacccctcgggttggaaatttcggtcagggaaacctcggggcaaagccgtcggtcccctgggacccggaaaattccaaaaccctccttaatcacatgtatacctccattgatggaattcttatattctcacgtttggaaaactcttgtagat
gi|14 : ttTTTT-TA--AAAAAAA-CTTCAAAGGA-------------TCCTGTT-TTACAA-ACAA-T--ACG---AAACACAAGGTCCTGTCCTCCCCTAATGTACGC-AAT-CCC-CGGCGAgc
gi|15 : CTATTCTATACAT-GAGCACG-T-GACTCGATAAGTCG----GGACtaga
gi|16 : TTCTCCCATTACT-ACCC-ATGT-GAGATAGG
gi|2 : TTCTCCCATTACT-ACCC-ATTT-GAGATAGGTTGTTTCTCAT--T-GAGAAAAAAGCCTGCGT--GAGATCCGCCTAT-CT-TACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TTTTACAAAAAACTC--AAAGAAT--ATGGCCATCTCCCGTT--TACGA-ACAAATTTACG---AAACACAAGGCCCTGTCCTCCCGAAGTATACGCAAAT-CCC-CAGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACATTA-TG-TACAGGCAACCCCGATAATCTATTTTACTTGGCGG-TTGTTACAAACAAC-AAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATACAAAGTTTTAGCTAAAAAA-GCTTGGCTTACCTGAAGATCGAATATTCA--CATAACACGAGCGTC-AGCAAACA--TTAGTCCAGAAAATGACGGCAAAGACATACAATGTCCCAGATTCCCTCCTTGTTAAAAGCTGTATGTTAACGGGTCACAAAAATCCAAGGATCAACT-GAACAACCCTATCGTAACACT-AAATAACACTCATATAACATGCAATTTCCCTCTATTCCTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCCACCCCCCCTCCTGTCGCCCCCA-CCGGTGATGCATCTGTGGGACGGAACAAATATGCTAGTACTTACTGCTCCTGCAGCAAAACGC-GTCAG
gi|4 : TTCTCCTATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAG---CCT-CGC--GAGACCCACCTAT-CT-CACAT-GAGCACG-T-GACTCGATAAGCCG----GGACTAC--TTTTAGGGGAAA-TTCGTCTGCTATTTT-T----AAAAAAACTTCAAAGGAAT--ATGGCCACCTTCCGTT-TTACTA-ACGA---TACG---AAACACAAGTCCCTGTCCTCCCTGAATGTAC-CCAAT-CCC-CGGCGAGTTC-AATGTCC-TATC--ACCAC--GTACA-ATTTTT--AT--CGCT--CAATGATACCCCAGA-------ATTACA---------------CCATTTTACTTGGCGG-TTGTTATAAAAAACAAAAATCCTCGGATCGATGAAAGATGGTTTGTAAGTGGACCGGAAAGAATAAAATTGAGTCTCCCATGTAACTATATAGTTAAAAAC-GC-TGGCTTACCAGAAGATCGAAAAATCA--CTTAACACGAGCCTC-AGCAA--------------AACATTA-GGC-----T-----AT---CCAGATTCCCTTC-------AAG-TGTATGTT-ACAGGTCACAAAAATTC-AGGATC-ACTGG-ACAA-CC-ATCGT-ACACTG-AATAACACTCATA-AACATGCAATTT-CCTCTATT-GTGTCAGCAAATACATCTTGTGAAAACCAACGTACAC-----CC-CTCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGAC
gi|5 : TTCTCCCATTACTTACCC-ATGTTGAGATAG--T-TTTCCCAT-GTTGAGAAAG---CCT-CTTTTGAGATCCGCCTATCTC-CACAT-GAGCACG-T-GAC-CGATAAGTCGTAGGAGACTAC--TTTTAGGGGAAAATCCGTCTGCTATTTT-TA--ATAAAAAACTTCAAAAGAATTGATGGCCACCTCCCGTTAT-ACGATACAA-TTTACGCGAAAACACAGGTCCCTGTCCTCCCCGAATGTACACCAAT-CCCACAGCGAGCTC-GATGTCCCTATCTGGCCACAATTACGCATCTTTCTATTACGCTTCCAATGAGACCCCAGACAATAACGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGGTTTGTTACAAACAA
gi|6 : ctTTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCTCCGTT-GAGATCCGCCTATTCT-CACATGGAGCACG-TGGACTCGATAAGTCG----GGACTACATTTTTAGGGGAAA-TCCGTCTGCTATTTTAAA--AAAAAAAACTTT-AAAGAAT--AT-GCCACCTCCCGTTA-TACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCCTCCCGAATGTACGCAATTCCCC-CAGCGAGCTTGGATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATG-GACCCCA-ACA-
blockSeqs : T . T G G . T AA G TT T A G . G TAGG AT A TTTT CA TG G AT T ATT CGA G A C A G C TG AA C CT TA TC A G C ATAACGT GG T A T T C C C . T A . . ACA T ACGGCAAAGACATACAATG TTGTT C A G A A GA CCCT A A T C C A A A TGT C G G G A C T T C A .
blockSeqs : . . . G . . . A C T C . . . . . . . AAA CA . G T . TT . A C . . . . . . . . . . A G C AT G . . T T C T T . . A . . . . AGGCTAT . . . G . . GG CC . G . . . A . . . C . G G A . .
blockSeqs : . . . G . . . . . . T . . . . . . . TA CA . G T . TT . G C . . . . . . . . . . . . . . .
blockSeqs : . . . G . . . . . . . . . . . . . . TA T . . A . T . . A . .
blockSeqs : . . . . . . . . . . T . . . . . . .
blockSeqCons : A* ***
originalCons : TTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCT-CGTT-GAGATCCGCCTATTCT-CACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCTCCCCGAATGTACGCNAAT-CCC-CGGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACA-TA-CGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATANAAAGTTTTAGNTAAAAAA-GC-TGGCTTACCTGAAGATCGAAAATTCA--CTTAACACGAGCGTC-AGCAAACA--TTAGCCCAGAACATTA-GGC-----C-----ATGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGGGTCACAAAAATCC-AGGATC-ACTGGAACAA-CCTATCGT-ACACTGAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGCTCNCGCAGCAAAACGCAGTCAG
finalCons : TTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCT-CGTT-GAGATCCGCCTATTCT-CACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCTCCCCGAATGTACGCNAAT-CCC-CGGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACA-TA-CGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATANAAAGTTTTAGNTAAAAAA-GC-TGGCTTACCTGAAGATCGAAAATTCA--CTTAACACGAGCGTC-AGCAAACA--TTAGCCCAGAACATTA-GGC-----C-----ATGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGGGTCACAAAAATCC-AGGATC-ACTGGAACAA-CCTATCGT-ACACTGAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGCTCNCGCAGCAAAACGCAGTCAG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCTGCAAGCAAATGCAGTCAGTCCTAGAAGTAGGTCTGAGAACTGTTATGGTCTTTTCGCTGGAAAGTCACCATCCAGAATTGCAATTTAGGTATATCCACAACAATCCCCACAGAAACGGAGAGTTGACTATTCCGATTGAAACGTGTTTTTAGTGATGCCGGCGTTTTATGTGACTACACGGGAATAAATAGTACGCTTGATGTTTTTTCTGAATTCTTAATTCAAAATTGTTGGTTAATATTTTTTCTCAATTTGGTTATATTTACTATCTGCGCTCAAATGCGCATTAATTATGATTTAAACAACATATAATCATATTATTACATTTCATTTATCTCCCAAGCTTGCCTGTTAGAATAATTTATCTTCCCTGTACATACATACAGTATTCTACTGAAAAAAGTACGGTCTGTTGAAAATATATGGTTACAAATTTTTTCAACGATTTTAAATTTTCGAGTTTATTTTTAATCCTATTGAATTCGTAGAATGAAGCTTAATGGGAGAAAAAGAATCGATCATGAGTCAATCCAATTGGGAATATGGAAATCTACCCTCGGGTTGGAAATTTCGGTCAGGGGCGGAGGCTGCCTTGGGTGAGATTTCCCTATTCCCACATGGATACTCATGATGGATTCTTATAATCCTTTGTTCCTTGAATGCTTCATATAGA
Unaligned ( gi|7 ): GTTGAAAACAAAAATGGTAAACATTTAACGATTTGCTCAACCATCTTAATAAATTTTTAGGAGTTTACTATATATGTGATAATTAGATAGAGATGAACTTTAATGGGAGAACGAACTAATCCTAGTCCATAGCCAAAAGTCCATCCCTGTGGAATAGGAAAAATCTCAGCCCCCCGGTGGGAAAGTCTTCCGGTGAGCGGACTCGGCAGCCTCTTCTGACGAAATACCTCCAACCCCTTGCCGGTGAAGTTTCGCCTATCCCCACATGGCATGAGCTCATTCAGGATTTATA
Unaligned ( gi|8 ): ATAAAATTTCGATTCTTTAATTTCTGTTAAGTTCTTTCTTTGTAAACAGCAAACAATGAATAAATTTGTTTGTATATATATAGATATATATTCTCAATTTTGCTATATAATTCTTTTCTACTTGGCTAGAAAGACGTATTAATTTATGATTTAAAAAAAATTAATGTATTTAAATTTCTCCCAGTAACTTGTTAGAAATAATTTATTTCCGCGGATTATACATACATACACTATGTTAGTATGTACTTGAAAATTATCTGTGAAAAATATTTCTTA
Unaligned ( gi|9 ): TTTTCCCCCTACTTGCTAAAATATTTAATCGCGGTGCATACATACAGTTTGTATTTAAATTTACGATCATCTAAAAAATAATCTTAAAATTTTCAATAATTTAAATTTTCGGATTTATTCTTCTAGTGAACTTACGTAGAATGAAACTTTTTAATGTAAAAAATAATGCATATGAGTCATCCATGTTTGAATTAGGACACTCACCTCGAGGTTGGATATTTTGGTCAAGGAACTCGGCTGCCT
Unaligned ( gi|11 ): ATGGGAGAAAAATGCCTCATCATGAGTTCATTAGTTTAAAGATGAAGGGGTGGGGATATTTTTGGTCAGGGACTGAACAAACTATCCCAGAAGAAAATTTTCCACCCCCCAACAAAAATACTCGTGTTGAATTCTTATACCCTGTTC
Unaligned ( gi|12 ): CTTATTGGGAGAAAAAAATCTTTAATCATGAGTAGATTGCTGTGGGATAAGGGAGGTCTCATCCTTGGGGAAGAAGATTTTGGTCAGGGTGAGAGTTCCCCATCCCACATAGTTTTTCATGGTGGATTCTTACAATGCTT
Unaligned ( gi|13 ): TTTCAGTTTCTCCCTACTTGCTGTAGAAATCATTTATTTCCGCGGTACATACATACAGTATGTACTGTAAAATTACGATCTGTTTGAAAAATAATCTTAAAATTTTCAATTTTAAACC
Alignments
lowQualScore : 22 1 22 1111 11 11111 22 111 1 1 11 11 1 11 11 11 3333333 11 1 1 1 11 1 22222 9999999999999999999 22222 1 1 1 1 1111 1 11 1 1 1 1 222 1 1 1 1 1
lowQualScore : 6 6 6 6 8 8 8 11 6 88 9 6 6 6 6 4444 11 0 8 99999 44 99 2 66 6 999 888 3 8 8 8 0 0 33 33 0 33 33 33 3 2 2 7777777 22 0 0 7 7 7 6 1 1 3 3 7 88 3 33333 3 0000000000000000000 33333 3 3 6 3 3 999 7777 3 99 3 3 3 7 7 3 333 6 6 6 6 7 3 3 5 1 5 5
lowQualScore : . . . . . . . .. . .. . . . . . .... .. . . ..... .. .. . .. . ... ... . . . . . . .. .. . .. .. .. . . . ....... .. . . . . . . . . . . . .. . ..... . ................... ..... . . . . . ... .... . .. . . . . . . ... . . . . . . . . . . .
lowQualScore : 7 7 7 7 0 0 0 66 0 44 8 7 7 7 7 2222 00 8 0 00000 22 22 5 88 7 000 333 2 8 0 0 0 0 88 88 0 88 88 88 2 5 5 7777777 55 2 0 3 3 3 7 0 0 3 3 3 33 3 00000 7 7777777777777777777 00000 3 3 7 3 3 333 3333 3 33 3 3 3 3 3 3 333 7 7 7 7 3 3 3 5 0 5 5
consensus : TTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCT-CGTT-GAGATCCGCCTATTCT-CACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCTCCCCGAATGTACGCNAAT-CCC-CGGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACA-TA-CGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATANAAAGTTTTAGNTAAAAAA-GC-TGGCTTACCTGAAGATCGAAAATTCA--CTTAACACGAGCGTC-AGCAAACA--TTAGCCCAGAACATTA-GGC-----C-----ATGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGGGTCACAAAAATCC-AGGATC-ACTGGAACAA-CCTATCGT-ACACTGAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGCTCNCGCAGCAAAACGCAGTCAG
Reference ( family-433 ) : TTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCT-CGTT-GAGATCCGCCTATTCT-CACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTATTACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCTCCCCGAATGTACGCNAAT-CCC-CGGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACA-TA-CGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATANAAAGTTTTAGNTAAAAAA-GC-TGGCTTACCTGAAGATCGAAAATTCA--CTTAACACGAGCGTC-AGCAAACA--TTAGCCCAGAACATTA-GGC-----C-----ATGTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGGGTCACAAAAATCC-AGGATC-ACTGGAACAA-CCTATCGT-ACACTGAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCC-CCCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGACTACTGCTCNCGCAGCAAAACGCAGTCAG
gi|1 : A-GCAACCCCGATAACCTATTTTACTTTGCGG-TTGTTACAAACAACAAAAATCCTCGGATCGATGAAAGATGGTTTCTAAG-GGACCGGGAAGAATAAAAT-GAGTCTCC-ATAAAAAGTTTTAGGTAAAAAAAGC-TGGCTTACCTGAAGATCGAAA-TTCAACTTTAACACGAGCGTCGAGCAAACAAATTAGCCCAGAACATT------------------GTCCCAGATTCCCTCCTTG--AAAAG-TGTATGTT-ACGG-TCACAAAAATCC-AGGACC-ACTGAAACAA-C-TATCGT-ACACTAAAATAACACTCATA-AACATGCAATTT-CCTCTATT-CTGTCCACAAATACATCTTGTGAAAACCAACGT--ACACATGCC-CCCCCCCTTC---CG-CCCCAGCC-GTGATGCATCTGT-GGACGG-A-AAA-ATGCTAGTGACTACTGC-CACGCAGC-AAACGCAGTCAG
gi|10 : caTTCTCCCATAACT-ACCCCATGT-GAGATAG-TT-TCTCCAATTGT-GAGAGAAG-GCCT-CGT---GGATCCGCCTCATCT-CAC-T-GAGCACGCT-GACTCGATAAGTCG----GGACTAC--TTT--AGGGAAA-TCCGTCTGCTATTTT-AA--AAAAAAAACTTCAAAAGAAT--ATGGCCACCTCCCGTTA-TACGA-ACAA-TTTACGA--AAACACAtcactagaaagtaggtctgagaacattgttaagggtctttttcgctggaagtaccatccagaatccaatttgaggttaatatccacaacaatccttcaaagaaacggagacgtttgattccgattaaacgttgttagtgatgcggtttttgtggactacacgaataaaatagtacgctgtgattttttcttgaattcttcataaaatttcgatttttctttattctattgagttgtttctttgtaaacagcaaaaatgaaataaaatttgttgattaatgtttttttctttcaatttcgttattattttacaattactttcaaaggcgcattaatttaatttgattaaaaaaaacaaacattaaaatatttaattttctccctacttgctgtagaaaatcatttatttccgggtacatacatacagtatgtactgaaaattacgatctgttttgaaaataagttaaaaattttcaattttcaacaatttaaattttttagttttatttctatctagtgaaattacgtagaaataacttaatgggaaaaaaatccatcatgagtcaatccatgtggaattaggaaatctcacccctcgggttggaaatttcggtcagggaaacctcggggcaaagccgtcggtcccctgggacccggaaaattccaaaaccctccttaatcacatgtatacctccattgatggaattcttatattctcacgtttggaaaactcttgtagat
gi|14 : ttTTTT-TA--AAAAAAA-CTTCAAAGGA-------------TCCTGTT-TTACAA-ACAA-T--ACG---AAACACAAGGTCCTGTCCTCCCCTAATGTACGC-AAT-CCC-CGGCGAgc
gi|15 : CTATTCTATACAT-GAGCACG-T-GACTCGATAAGTCG----GGACtaga
gi|16 : TTCTCCCATTACT-ACCC-ATGT-GAGATAGG
gi|2 : TTCTCCCATTACT-ACCC-ATTT-GAGATAGGTTGTTTCTCAT--T-GAGAAAAAAGCCTGCGT--GAGATCCGCCTAT-CT-TACAT-GAGCACG-T-GACTCGATAAGTCG----GGACTAC--TTTTAGGGGAAA-TCCGTCTGCTATTTT-TTTTACAAAAAACTC--AAAGAAT--ATGGCCATCTCCCGTT--TACGA-ACAAATTTACG---AAACACAAGGCCCTGTCCTCCCGAAGTATACGCAAAT-CCC-CAGCGAGCTC-GATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATGAGACCCCAGACATTA-TG-TACAGGCAACCCCGATAATCTATTTTACTTGGCGG-TTGTTACAAACAAC-AAAATCCTCGGATCGATGAAAGATGGTTTCTAAGTGGACCGGGAAGAATAAAATTGAGTCTCCCATACAAAGTTTTAGCTAAAAAA-GCTTGGCTTACCTGAAGATCGAATATTCA--CATAACACGAGCGTC-AGCAAACA--TTAGTCCAGAAAATGACGGCAAAGACATACAATGTCCCAGATTCCCTCCTTGTTAAAAGCTGTATGTTAACGGGTCACAAAAATCCAAGGATCAACT-GAACAACCCTATCGTAACACT-AAATAACACTCATATAACATGCAATTTCCCTCTATTCCTGTCCGCAAATACATCTTGTGAAAACCAACGTACACACATGCCACCCCCCCTCCTGTCGCCCCCA-CCGGTGATGCATCTGTGGGACGGAACAAATATGCTAGTACTTACTGCTCCTGCAGCAAAACGC-GTCAG
gi|4 : TTCTCCTATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAG---CCT-CGC--GAGACCCACCTAT-CT-CACAT-GAGCACG-T-GACTCGATAAGCCG----GGACTAC--TTTTAGGGGAAA-TTCGTCTGCTATTTT-T----AAAAAAACTTCAAAGGAAT--ATGGCCACCTTCCGTT-TTACTA-ACGA---TACG---AAACACAAGTCCCTGTCCTCCCTGAATGTAC-CCAAT-CCC-CGGCGAGTTC-AATGTCC-TATC--ACCAC--GTACA-ATTTTT--AT--CGCT--CAATGATACCCCAGA-------ATTACA---------------CCATTTTACTTGGCGG-TTGTTATAAAAAACAAAAATCCTCGGATCGATGAAAGATGGTTTGTAAGTGGACCGGAAAGAATAAAATTGAGTCTCCCATGTAACTATATAGTTAAAAAC-GC-TGGCTTACCAGAAGATCGAAAAATCA--CTTAACACGAGCCTC-AGCAA--------------AACATTA-GGC-----T-----AT---CCAGATTCCCTTC-------AAG-TGTATGTT-ACAGGTCACAAAAATTC-AGGATC-ACTGG-ACAA-CC-ATCGT-ACACTG-AATAACACTCATA-AACATGCAATTT-CCTCTATT-GTGTCAGCAAATACATCTTGTGAAAACCAACGTACAC-----CC-CTCCCCCTTC---CGCCCCCAGCCGGTGATGCATCTGTGGGACGGAA-AAA-ATGCTAGTGAC
gi|5 : TTCTCCCATTACTTACCC-ATGTTGAGATAG--T-TTTCCCAT-GTTGAGAAAG---CCT-CTTTTGAGATCCGCCTATCTC-CACAT-GAGCACG-T-GAC-CGATAAGTCGTAGGAGACTAC--TTTTAGGGGAAAATCCGTCTGCTATTTT-TA--ATAAAAAACTTCAAAAGAATTGATGGCCACCTCCCGTTAT-ACGATACAA-TTTACGCGAAAACACAGGTCCCTGTCCTCCCCGAATGTACACCAAT-CCCACAGCGAGCTC-GATGTCCCTATCTGGCCACAATTACGCATCTTTCTATTACGCTTCCAATGAGACCCCAGACAATAACGTTACA-GCAACCCCGATAACCTATTTTACTTGGCGGTTTGTTACAAACAA
gi|6 : ctTTCTCCCATTACT-ACCC-ATGT-GAGATAGGTT-TCTCCCAT-GT-GAGAAAGA-GCCTCCGTT-GAGATCCGCCTATTCT-CACATGGAGCACG-TGGACTCGATAAGTCG----GGACTACATTTTTAGGGGAAA-TCCGTCTGCTATTTTAAA--AAAAAAAACTTT-AAAGAAT--AT-GCCACCTCCCGTTA-TACGA-ACAA-TTTACG---AAACACAAGGCCCTGTCCCTCCCGAATGTACGCAATTCCCC-CAGCGAGCTTGGATGTCC-TATC--GCCAC--TTACG-ATTTTT--AT--CGCT--CAATG-GACCCCA-ACA-
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCTGCAAGCAAATGCAGTCAGTCCTAGAAGTAGGTCTGAGAACTGTTATGGTCTTTTCGCTGGAAAGTCACCATCCAGAATTGCAATTTAGGTATATCCACAACAATCCCCACAGAAACGGAGAGTTGACTATTCCGATTGAAACGTGTTTTTAGTGATGCCGGCGTTTTATGTGACTACACGGGAATAAATAGTACGCTTGATGTTTTTTCTGAATTCTTAATTCAAAATTGTTGGTTAATATTTTTTCTCAATTTGGTTATATTTACTATCTGCGCTCAAATGCGCATTAATTATGATTTAAACAACATATAATCATATTATTACATTTCATTTATCTCCCAAGCTTGCCTGTTAGAATAATTTATCTTCCCTGTACATACATACAGTATTCTACTGAAAAAAGTACGGTCTGTTGAAAATATATGGTTACAAATTTTTTCAACGATTTTAAATTTTCGAGTTTATTTTTAATCCTATTGAATTCGTAGAATGAAGCTTAATGGGAGAAAAAGAATCGATCATGAGTCAATCCAATTGGGAATATGGAAATCTACCCTCGGGTTGGAAATTTCGGTCAGGGGCGGAGGCTGCCTTGGGTGAGATTTCCCTATTCCCACATGGATACTCATGATGGATTCTTATAATCCTTTGTTCCTTGAATGCTTCATATAGA
Unaligned ( gi|7 ): GTTGAAAACAAAAATGGTAAACATTTAACGATTTGCTCAACCATCTTAATAAATTTTTAGGAGTTTACTATATATGTGATAATTAGATAGAGATGAACTTTAATGGGAGAACGAACTAATCCTAGTCCATAGCCAAAAGTCCATCCCTGTGGAATAGGAAAAATCTCAGCCCCCCGGTGGGAAAGTCTTCCGGTGAGCGGACTCGGCAGCCTCTTCTGACGAAATACCTCCAACCCCTTGCCGGTGAAGTTTCGCCTATCCCCACATGGCATGAGCTCATTCAGGATTTATA
Unaligned ( gi|8 ): ATAAAATTTCGATTCTTTAATTTCTGTTAAGTTCTTTCTTTGTAAACAGCAAACAATGAATAAATTTGTTTGTATATATATAGATATATATTCTCAATTTTGCTATATAATTCTTTTCTACTTGGCTAGAAAGACGTATTAATTTATGATTTAAAAAAAATTAATGTATTTAAATTTCTCCCAGTAACTTGTTAGAAATAATTTATTTCCGCGGATTATACATACATACACTATGTTAGTATGTACTTGAAAATTATCTGTGAAAAATATTTCTTA
Unaligned ( gi|9 ): TTTTCCCCCTACTTGCTAAAATATTTAATCGCGGTGCATACATACAGTTTGTATTTAAATTTACGATCATCTAAAAAATAATCTTAAAATTTTCAATAATTTAAATTTTCGGATTTATTCTTCTAGTGAACTTACGTAGAATGAAACTTTTTAATGTAAAAAATAATGCATATGAGTCATCCATGTTTGAATTAGGACACTCACCTCGAGGTTGGATATTTTGGTCAAGGAACTCGGCTGCCT
Unaligned ( gi|11 ): ATGGGAGAAAAATGCCTCATCATGAGTTCATTAGTTTAAAGATGAAGGGGTGGGGATATTTTTGGTCAGGGACTGAACAAACTATCCCAGAAGAAAATTTTCCACCCCCCAACAAAAATACTCGTGTTGAATTCTTATACCCTGTTC
Unaligned ( gi|12 ): CTTATTGGGAGAAAAAAATCTTTAATCATGAGTAGATTGCTGTGGGATAAGGGAGGTCTCATCCTTGGGGAAGAAGATTTTGGTCAGGGTGAGAGTTCCCCATCCCACATAGTTTTTCATGGTGGATTCTTACAATGCTT
Unaligned ( gi|13 ): TTTCAGTTTCTCCCTACTTGCTGTAGAAATCATTTATTTCCGCGGTACATACATACAGTATGTACTGTAAAATTACGATCTGTTTGAAAAATAATCTTAAAATTTTCAATTTTAAACC