lowQualScore : 1 2 1 1 11 11 11
lowQualScore : . . . . .. .. ..
lowQualScore : 3 5 2 2 77 77 77
consensus : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
Reference ( gi|15 ) : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
gi|10 : TCAGG-GA-TGTGA-A--GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
gi|4 : TCAGG-GC-TGTGA-CT-GAATATCTC--AGAAA--TCA--GAGGGAGACTGGt
gi|3 : TCAGG-GGGTGTAA-CT-GAATTCCTC--AGAGA--TAA--GAGGAAATCTGGt
gi|9 : tCAGG-GA-TGTGA-TT-GAGTTCCTC--ATAAA--TCA--GAGGAAAACTGG
gi|11 : CAGG-GA-TGTGA-AT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGGt
gi|13 : CAGG-GA-TGTGA-TG-GAGTTCCTC--AGAAA--TCA--GAGGAAAATTGGt
gi|14 : CAGG-GA-TGTAA-TT-GAATTCCTC--AGAAA--TCA--GAGGAAAATTGGt
gi|6 : CAGG-GA-TGTGA-TT-GAGTTCCTCAAAAAAA--TCA--GAGGAATACTGGt
gi|12 : CAGG-GA-TGCAA-TT-GAGTTCCTC--AGAAA--TTA--GAGGATAACTGG
gi|19 : CAGG-GA-TGCGA-TT-GAGTTCCTC--AGAAA--TC----AGGAAAAATGGt
gi|22 : aCAGG-GA-CGTGA-TT-GAATTCCAC--AGAAA--TTA--GAGGAAAACTt
gi|20 : CAAG-GA-TGTTA-TT-GAGTTTCTC--AGAAA--TCA--GAGG-AAACTGGtg
gi|7 : CAGG-GA-TGTTA-TT-GAATACCTC--AGAAA--TCAAGAAGGAAAACTGGt
gi|8 : CAGG-GAATGCAA-TT-GAGTTTCTC--AGAAA--TTA--GAGGATAACTGG
gi|24 : CAGG-CC-TGTGA-CT-GAATTCCTC--AAAGA--TCA--GAGGAAAACTGt
gi|16 : CAGG-GA-TGAGA-TC-GGATGCCTC--GGAAA--TCA--GAGGAAAACTG
gi|28 : CAGG-GA-TGTAA-TT-GAATTCCTT--AAAAA--TCA--GAAG-AAACTGct
gi|5 : CAGGAGA-TGT-A-TT-GAGTTCCTC--AGACA--TCA--G-GGAAAACTGa
gi|25 : tgCAGG-GA-TGTGACTT-AAG-TCCTC--ACAAA--TCA--GAGG-AAACTGGat
gi|17 : CAGG-GG-TGTGG-CT-GAATTCCTC--AGAAA--TCT--TAGGAGGACCGG
gi|2 : CAGG-GA-TGTGA-CT-GGAATTCTC--AGAGAATTCA--GAGGAGAATTGG
gi|18 : cAGG-GA-TGTGA-CT-AAGTTCCTC--AGAAA--TCA--GAGGAAAACTGGt
gi|33 : AGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGG-AAACTGt
gi|23 : AGG-GA-TATGA-TT-AAGTTCCTC--AAAAA--TCA--GAGGAAAACTGG
gi|31 : AGG-GA-TGTGA-TT-GAATTCCTC--AGAAA--TTG--GAGGAAAACTGt
gi|27 : AGG-GA-TGTGA-CTCGAGTTCCTC--AGAAA--TCA--GAGGAAAAC
gi|21 : AGG-GA-TGTGA-AA-GAGTTCCTC--AGAAA--TCT--GAGGAAAACTGGgg
gi|34 : AGG-GA-TGTGA-C---AGTTC-TC--AGAAA--TCA--GAGGAAAACTGGt
gi|29 : GG-GA-TGTGA-CT-GAATTCCTC--ACAAA--TCA--GAGGAAAATTGGt
gi|26 : G-GA-TGTGA-TT-GAGTTCCTC--A-AAA--TCA--GAGGAAAACTGG
gi|35 : ca-GA-TGTGA-TT-GAATTCCTC--AGAAA--TCA--GAGCAAt
gi|30 : -TGTGA-CT-GAATTCCTC--AAAAA--TCA--GAGGAAAATTGG
gi|32 : ggccGTGA-TT-GGATTCCTC--AGAAA--TCT--GAGG-AAACTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): AACATTCAGGATGGTGATTAAATTCTCTCAAAATTGGGAGGAACCTGG
Alignments
lowQualScore : 1 2 1 1 11 11 11
lowQualScore : . . . . .. .. ..
lowQualScore : 2 4 2 2 66 66 66
consensus : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
Reference ( family-4322 ) : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
gi|10 : TCAGG-GA-TGTGA-A--GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
gi|11 : CAGG-GA-TGTGA-AT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGGt
gi|12 : CAGG-GA-TGCAA-TT-GAGTTCCTC--AGAAA--TTA--GAGGATAACTGGt
gi|13 : CAGG-GA-TGTGA-TG-GAGTTCCTC--AGAAA--TCA--GAGGAAAATTGGt
gi|14 : CAGG-GA-TGTAA-TT-GAATTCCTC--AGAAA--TCA--GAGGAAAATTGGt
gi|15 : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGGt
gi|16 : CAGG-GA-TGAGA-TC-GGATGCCTC--GGAAA--TCA--GAGGAAAACTG
gi|17 : CAGG-GG-TGTGG-CT-GAATTCCTC--AGAAA--TCT--TAGGAGGACCGGct
gi|18 : AGG-GA-TGTGA-CT-AAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
gi|19 : CAGG-GA-TGCGA-TT-GAGTTCCTC--AGAAA--TC----AGGAAAAATGGt
gi|2 : aCAGG-GA-TGTGA-CT-GGAATTCTC--AGAGAATTCA--GAGGAGAATTGGt
gi|20 : cCAAG-GA-TGTTA-TT-GAGTTTCTC--AGAAA--TCA--GAGG-AAACTGGt
gi|21 : AGG-GA-TGTGA-AA-GAGTTCCTC--AGAAA--TCT--GAGGAAAACTGGt
gi|22 : CAGG-GA-CGTGA-TT-GAATTCCAC--AGAAA--TTA--GAGGAAAACTt
gi|23 : AGG-GA-TATGA-TT-AAGTTCCTC--AAAAA--TCA--GAGGAAAACTGGtg
gi|24 : CAGG-CC-TGTGA-CT-GAATTCCTC--AAAGA--TCA--GAGGAAAACTGt
gi|25 : CAGG-GA-TGTGACTT-AAG-TCCTC--ACAAA--TCA--GAGG-AAACTGG
gi|26 : G-GA-TGTGA-TT-GAGTTCCTC--A-AAA--TCA--GAGGAAAACTGG
gi|27 : caAGG-GA-TGTGA-CTCGAGTTCCTC--AGAAA--TCA--GAGGAAAACt
gi|28 : CAGG-GA-TGTAA-TT-GAATTCCTT--AAAAA--TCA--GAAG-AAACTGgg
gi|29 : GG-GA-TGTGA-CT-GAATTCCTC--ACAAA--TCA--GAGGAAAATTGGa
gi|3 : TCAGG-GGGTGTAA-CT-GAATTCCTC--AGAGA--TAA--GAGGAAATCTGG
gi|30 : t-TGTGA-CT-GAATTCCTC--AAAAA--TCA--GAGGAAAATTGG
gi|31 : ggccAGG-GA-TGTGA-TT-GAATTCCTC--AGAAA--TTG--GAGGAAAACTG
gi|32 : GTGA-TT-GGATTCCTC--AGAAA--TCT--GAGG-AAACTG
gi|33 : cagaagaAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGG-AAACTG
gi|34 : AGG-GA-TGTGA-C---AGTTC-TC--AGAAA--TCA--GAGGAAAACTGG
gi|35 : -GA-TGTGA-TT-GAATTCCTC--AGAAA--TCA--GAGCAAt
gi|4 : TCAGG-GC-TGTGA-CT-GAATATCTC--AGAAA--TCA--GAGGGAGACTGG
gi|5 : CAGGAGA-TGT-A-TT-GAGTTCCTC--AGACA--TCA--G-GGAAAACTGt
gi|6 : tgCAGG-GA-TGTGA-TT-GAGTTCCTCAAAAAAA--TCA--GAGGAATACTGGat
gi|7 : CAGG-GA-TGTTA-TT-GAATACCTC--AGAAA--TCAAGAAGGAAAACTGG
gi|8 : CAGG-GAATGCAA-TT-GAGTTTCTC--AGAAA--TTA--GAGGATAACTGG
gi|9 : CAGG-GA-TGTGA-TT-GAGTTCCTC--ATAAA--TCA--GAGGAAAACTGGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AACATTCAGGATGGTGATTAAATTCTCTCAAAATTGGGAGGAACCTGG
Alignments
lowQualScore : 1 2 1 1 11 11 11
lowQualScore : . . . . .. .. ..
lowQualScore : 2 4 2 2 66 66 66
consensus : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
Reference ( family-4322 ) : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
gi|10 : TCAGG-GA-TGTGA-A--GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
gi|11 : CAGG-GA-TGTGA-AT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGGt
gi|12 : CAGG-GA-TGCAA-TT-GAGTTCCTC--AGAAA--TTA--GAGGATAACTGGt
gi|13 : CAGG-GA-TGTGA-TG-GAGTTCCTC--AGAAA--TCA--GAGGAAAATTGGt
gi|14 : CAGG-GA-TGTAA-TT-GAATTCCTC--AGAAA--TCA--GAGGAAAATTGGt
gi|15 : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGGt
gi|16 : CAGG-GA-TGAGA-TC-GGATGCCTC--GGAAA--TCA--GAGGAAAACTG
gi|17 : CAGG-GG-TGTGG-CT-GAATTCCTC--AGAAA--TCT--TAGGAGGACCGGct
gi|18 : AGG-GA-TGTGA-CT-AAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
gi|19 : CAGG-GA-TGCGA-TT-GAGTTCCTC--AGAAA--TC----AGGAAAAATGGt
gi|2 : aCAGG-GA-TGTGA-CT-GGAATTCTC--AGAGAATTCA--GAGGAGAATTGGt
gi|20 : cCAAG-GA-TGTTA-TT-GAGTTTCTC--AGAAA--TCA--GAGG-AAACTGGt
gi|21 : AGG-GA-TGTGA-AA-GAGTTCCTC--AGAAA--TCT--GAGGAAAACTGGt
gi|22 : CAGG-GA-CGTGA-TT-GAATTCCAC--AGAAA--TTA--GAGGAAAACTt
gi|23 : AGG-GA-TATGA-TT-AAGTTCCTC--AAAAA--TCA--GAGGAAAACTGGtg
gi|24 : CAGG-CC-TGTGA-CT-GAATTCCTC--AAAGA--TCA--GAGGAAAACTGt
gi|25 : CAGG-GA-TGTGACTT-AAG-TCCTC--ACAAA--TCA--GAGG-AAACTGG
gi|26 : G-GA-TGTGA-TT-GAGTTCCTC--A-AAA--TCA--GAGGAAAACTGG
gi|27 : caAGG-GA-TGTGA-CTCGAGTTCCTC--AGAAA--TCA--GAGGAAAACt
gi|28 : CAGG-GA-TGTAA-TT-GAATTCCTT--AAAAA--TCA--GAAG-AAACTGgg
gi|29 : GG-GA-TGTGA-CT-GAATTCCTC--ACAAA--TCA--GAGGAAAATTGGa
gi|3 : TCAGG-GGGTGTAA-CT-GAATTCCTC--AGAGA--TAA--GAGGAAATCTGG
gi|30 : t-TGTGA-CT-GAATTCCTC--AAAAA--TCA--GAGGAAAATTGG
gi|31 : ggccAGG-GA-TGTGA-TT-GAATTCCTC--AGAAA--TTG--GAGGAAAACTG
gi|32 : GTGA-TT-GGATTCCTC--AGAAA--TCT--GAGG-AAACTG
gi|33 : cagaagaAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGG-AAACTG
gi|34 : AGG-GA-TGTGA-C---AGTTC-TC--AGAAA--TCA--GAGGAAAACTGG
gi|35 : -GA-TGTGA-TT-GAATTCCTC--AGAAA--TCA--GAGCAAt
gi|4 : TCAGG-GC-TGTGA-CT-GAATATCTC--AGAAA--TCA--GAGGGAGACTGG
gi|5 : CAGGAGA-TGT-A-TT-GAGTTCCTC--AGACA--TCA--G-GGAAAACTGt
gi|6 : tgCAGG-GA-TGTGA-TT-GAGTTCCTCAAAAAAA--TCA--GAGGAATACTGGat
gi|7 : CAGG-GA-TGTTA-TT-GAATACCTC--AGAAA--TCAAGAAGGAAAACTGG
gi|8 : CAGG-GAATGCAA-TT-GAGTTTCTC--AGAAA--TTA--GAGGATAACTGG
gi|9 : CAGG-GA-TGTGA-TT-GAGTTCCTC--ATAAA--TCA--GAGGAAAACTGGt
blockSeqs : A G C C AA AT AG
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blockSeqCons :
originalCons : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
finalCons : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AACATTCAGGATGGTGATTAAATTCTCTCAAAATTGGGAGGAACCTGG
Alignments
lowQualScore : 1 2 1 1 11 11 11
lowQualScore : . . . . .. .. ..
lowQualScore : 2 4 2 2 66 66 66
consensus : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
Reference ( family-4322 ) : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
gi|10 : TCAGG-GA-TGTGA-A--GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
gi|11 : CAGG-GA-TGTGA-AT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGGt
gi|12 : CAGG-GA-TGCAA-TT-GAGTTCCTC--AGAAA--TTA--GAGGATAACTGGt
gi|13 : CAGG-GA-TGTGA-TG-GAGTTCCTC--AGAAA--TCA--GAGGAAAATTGGt
gi|14 : CAGG-GA-TGTAA-TT-GAATTCCTC--AGAAA--TCA--GAGGAAAATTGGt
gi|15 : TCAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGGAAAACTGGt
gi|16 : CAGG-GA-TGAGA-TC-GGATGCCTC--GGAAA--TCA--GAGGAAAACTG
gi|17 : CAGG-GG-TGTGG-CT-GAATTCCTC--AGAAA--TCT--TAGGAGGACCGGct
gi|18 : AGG-GA-TGTGA-CT-AAGTTCCTC--AGAAA--TCA--GAGGAAAACTGG
gi|19 : CAGG-GA-TGCGA-TT-GAGTTCCTC--AGAAA--TC----AGGAAAAATGGt
gi|2 : aCAGG-GA-TGTGA-CT-GGAATTCTC--AGAGAATTCA--GAGGAGAATTGGt
gi|20 : cCAAG-GA-TGTTA-TT-GAGTTTCTC--AGAAA--TCA--GAGG-AAACTGGt
gi|21 : AGG-GA-TGTGA-AA-GAGTTCCTC--AGAAA--TCT--GAGGAAAACTGGt
gi|22 : CAGG-GA-CGTGA-TT-GAATTCCAC--AGAAA--TTA--GAGGAAAACTt
gi|23 : AGG-GA-TATGA-TT-AAGTTCCTC--AAAAA--TCA--GAGGAAAACTGGtg
gi|24 : CAGG-CC-TGTGA-CT-GAATTCCTC--AAAGA--TCA--GAGGAAAACTGt
gi|25 : CAGG-GA-TGTGACTT-AAG-TCCTC--ACAAA--TCA--GAGG-AAACTGG
gi|26 : G-GA-TGTGA-TT-GAGTTCCTC--A-AAA--TCA--GAGGAAAACTGG
gi|27 : caAGG-GA-TGTGA-CTCGAGTTCCTC--AGAAA--TCA--GAGGAAAACt
gi|28 : CAGG-GA-TGTAA-TT-GAATTCCTT--AAAAA--TCA--GAAG-AAACTGgg
gi|29 : GG-GA-TGTGA-CT-GAATTCCTC--ACAAA--TCA--GAGGAAAATTGGa
gi|3 : TCAGG-GGGTGTAA-CT-GAATTCCTC--AGAGA--TAA--GAGGAAATCTGG
gi|30 : t-TGTGA-CT-GAATTCCTC--AAAAA--TCA--GAGGAAAATTGG
gi|31 : ggccAGG-GA-TGTGA-TT-GAATTCCTC--AGAAA--TTG--GAGGAAAACTG
gi|32 : GTGA-TT-GGATTCCTC--AGAAA--TCT--GAGG-AAACTG
gi|33 : cagaagaAGG-GA-TGTGA-TT-GAGTTCCTC--AGAAA--TCA--GAGG-AAACTG
gi|34 : AGG-GA-TGTGA-C---AGTTC-TC--AGAAA--TCA--GAGGAAAACTGG
gi|35 : -GA-TGTGA-TT-GAATTCCTC--AGAAA--TCA--GAGCAAt
gi|4 : TCAGG-GC-TGTGA-CT-GAATATCTC--AGAAA--TCA--GAGGGAGACTGG
gi|5 : CAGGAGA-TGT-A-TT-GAGTTCCTC--AGACA--TCA--G-GGAAAACTGt
gi|6 : tgCAGG-GA-TGTGA-TT-GAGTTCCTCAAAAAAA--TCA--GAGGAATACTGGat
gi|7 : CAGG-GA-TGTTA-TT-GAATACCTC--AGAAA--TCAAGAAGGAAAACTGG
gi|8 : CAGG-GAATGCAA-TT-GAGTTTCTC--AGAAA--TTA--GAGGATAACTGG
gi|9 : CAGG-GA-TGTGA-TT-GAGTTCCTC--ATAAA--TCA--GAGGAAAACTGGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AACATTCAGGATGGTGATTAAATTCTCTCAAAATTGGGAGGAACCTGG