lowQualScore                  :                                                       333333333333333333         22                 11                3333333                                                                    111                   111111111            111                   888888888888888888888888888888888888888888888888888888         11111111           444444                                             1111                                                                                                                                                                            
lowQualScore                  :                                               1       111111111111111111 1  1 1  88     1 1  1    5 33         33     0000000     1 222 777777  1    555 1    1  11   9 1 1   88888   555 22 1   222 3  3 666666666 3  222222222   6  3 3   333  44 1   5   3     333333333333333333333333333333333333333333333333333333  1  55  66666666      666  555555   66   66  999999 1  1 1 1  3333     1 1  1 0000     444 3  1         22      1 1 2   2  1 1 1 11 33 66    55555555 1 1 1  33      333   1 1 1 333  1  1 1  1     1     3333   1 1    1 5555 1 44  1 22   1 222   1         
lowQualScore                  :                                               .       .................. .  . .  ..     . .  .    . ..         ..     .......     . ... ......  .    ... .    .  ..   . . .   .....   ... .. .   ... .  . ......... .  .........   .  . .   ...  .. .   .   .     ......................................................  .  ..  ........      ...  ......   ..   ..  ...... .  . . .  ....     . .  . ....     ... .  .         ..      . . .   .  . . . .. .. ..    ........ . . .  ..      ...   . . . ...  .  . .  .     .     ....   . .    . .... . ..  . ..   . ...   .         
lowQualScore                  :                                               4       333333333333333333 3  3 3  33     3 3  3    0 33         00     0000000     2 333 333333  3    222 2    2  77   0 3 4   22222   000 44 7   555 6  3 222222222 3  333333333   7  3 3   888  66 6   7   1     555555555555555555555555555555555555555555555555555555  4  00  88888888      444  555555   11   11  666666 6  5 5 5  1111     5 5  5 3333     111 0  5         00      4 4 8   8  4 4 4 99 44 22    22222222 4 4 4  55      777   6 6 7 000  7  2 7  7     6     5555   7 7    7 2222 7 00  7 33   7 999   7         
consensus                     :                                   AGTTTTCCAAAT-CAAATGT--GG---AG-T-G-----C-CA-G-AC-ATTTTG-T-CT-GCCA-T--TTTTTCAAA--TTCTG-C----CAGACA-C---C------AA-AAAA--GT-ATGG-CA--GACAA-A-TTT-N---TAAG--A--A-TTA-TTA-TC-T--C--T---A-AA--C------TGG-TA-C-CGT---AA--ATTTTAGAC-CGGTT------------------T-------A---------------A-----------AACCA--AA--------CGTTTA---TT-ATG--TTT--TTT--TT--C--GA-TA-A-G-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-G-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--ACA-G---GAT-TTGGAAAAC
Reference ( gi|5 )            :                                   AGTTTTCCAAAT-CAAATGT--A----AG-T-G-----C-CA-G-ACGATTTTG-T-CT-GCCA-T--TTTTTCAAA--TTCTGCC----CAGACA-C---C------AA-AAAA--GT-ATGG-CA--GACAA-A-TTT-T---TAAA--A--A-TTA-TTA-TC-T--C--T---A-AA--C------TGG-TA-C-CGT---AA--ATTTTAGAC-CAGTT------------------T-------A---------------A-----------AACCA--AA--------CGTTTA---TT-ATGGGTTT--TTT--TT--C--GA-TA-A-G-AA----TTACA-A-CT-A---CTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-G-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--ACA-G---GAT-TTGGAAAAC
gi|4                          :                                   AGTTTTTCAA-T-CTATGGC--A----GT-T-A-----C-CA-G--C-ATTTTG-T-CT-GCCA-T--TTTTTCAAA--TTCTGCC----T-GACA-G---C------AA-AAAG--TT-ATGG-CA--GACAA-C-TTT-T---TAAA--AAAA-TTA-TTA-TC-T--C--T---A-AA--C------TGG-TG-C-CGT---AG--ATTTTAAACACAGTTAAAGACGTATCG------C-------A---------------A-----------AACCA--AA--------CGTTTA------------TT--TTT--TT--C--AA-TA-A-GAAA----TTACA-A-CT-A---TTTGGGA--A-AA-ACGTTGTCA--GACATT-T-T-GAC-TG-G-T-T--T--A--ATAA--------G-A-G--A--TCTGTC-G-GAC-A-T-T---AT-TTTT-TT-TAGGT-AGAC-----TTT-G-GCCA-T----G-A--TT-G--ACA-G---GAT-TTGGAAAA
gi|6                          :                                  gAGTTTTCCAAAT-CAAATGT--G----AT-C-GAGTTCC-CA-G-AC-ATTTTA-T-CT-GCCA-T--TTTTTCAAA--TTCTGCC-----AGACA-C---C------AA-AACA--GT-ATGG-CA--GA-AA-A-CTT-T---T---------------------------T---A-AA--C------TGG-TA-C-CGT---AA--ATTTCTGAC-CAGTC------------------C-------A---------------A-----------AACCA--AA--------TGTTTAGTTTT-ACTTATTT--TTT--TT--C--AA-TA-A-G-AA----TT---------------TGGG---A-AA-ATGT---CA--GACATT-T-TTGAC-TA-T-C-A--T--AC-ATCATGTATTATG-A-A-AA--TCTGTC-G-GAC-A-T-C---AT-TGTT-TT-T-TGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--ACA-G---GAT-TTGGAAAAC
gi|10                         :                                  gAGTTTTCCAAAT-CAAATGTG-G----AGTT-G-----C-CA-G-ACA---------------------TTTTCGAT--TTCTG-C----CAGACA-A---C------AA-AAAA--GT-ATAA-CA--GA
gi|13                         :                                 agAGTTTTCCAAAT-CAAGCGT--GG---AG-TTG-----C-CA-G-AC-AGTTTG-T-CT-GCCATT--TTTTTCAAA--TTCTG-C----GAGACA-C---C------AA-AAAA--GT-ATGG-CA--GAC-A-A-CTT-A---TAAG--A--A-TTA-ttagaccagttaaagatgtgttcataaccaaacgtttatttttttttttcaataagaattaaaactatttgttgtcagacattttgactgacataataagagaatctgtcggacattattgtttttaggcagacttttgcccatgtccgtcaggatttggaaaactc
gi|13                         :                                 agAATTTCCTAAAT--AGTTGT--A----AT-T-C-----T-TA-T-AAG---TTG-T-CT-GCCA-TACTTTTTTGGT--GTCT-CG----CAGA-A-T---TTG----AA-AAAA-----ATGG-CA--GACAA-A-CTcaactatttaggaaattgttgtcagatattttgactggcataataagagaatctgtcggacattattgtttttaggcagacttttgcccatgtctgaaaggatttggaaaac
gi|14                         : agagttttccaaatcaagcgtggagttgccagacAGTTTTCCAAAT-CAAATGTGGA----AC-T-G-----C-CA-G-TC-ATTTTG-T-CT-GACA-T--TTTTTCAAA--TTCTG-C----CAGACA-C---C------AA-TATA--CT-ATGG-CA--GAC-A-A-TTT-A---TAAG--A--A-TTA-gttgtcagatattttgactggcataataagagaatctgtcggacattattgtttttaggcagacttttgcccatgtctgaaaggatttggaaaac
gi|15                         :                                 agAGTTTTCCAAAT-CAAATGTGGA----AT-T-G-----C-CAAG-AC-ATTTTG-T-CT-GACA-T--TTTTTCAAA--TTCTG------CAGACA-C---C------AA-TAAA--GT-AT-G-CA--GAC-A-A-TAC-A---TAAG--A--A-TTA--CA-AC-T--T--TGGCA-AA--A------TGT-TG-T-CAG---AC--ATTTT-GAC-TGGCA------------------T-------A---------------A-----------TA-CA--AA--------CATCTG---TC-Acaactatttgggaaaatgttgtcagacattttgactggtataagaagagaatctgtcagacattattgtttttagacagacttttgcccacgtctgacaggatttgaaaacc
gi|9                          :                                  gAGTTTTCCAAAT-AAAATGT--GGAACAT-T-G-----CGCA-G-AC-ATTTT------------T--TTTTTAAAAAATTCTGTC------GACA-C-------------AAAA--AT-ATGG-CA--GACAA-C-TTT-T---TAA----------A-TTA-TC-T--C--T---A-AAAGCTGTGCATGG-TA-C-CGTCA-AA--GATTTAGAC-CAGTT------------------T-------A---------------A-----------AACCA--AAACCAAAACCTTTTA---TTCATGGTTTT--TTT--TTC-C--GA-TA-A-G-AA----ATACA-A-AT-ATCGTTTGGG---A-AA-----TGTCA--AACATT-TCT-GACTTG-G-C-A--T--A--ATAA--------G-A-G-gacattattgtttttaggcagactttcgcccatgtctgacaggatttggaaaact
gi|17                         :                                  gAGTTTTCCAAAT-CAAATGTGGA----AT-T-G-----C-CA-G-ACA--TTTG-T-CT-GACA-T--TTTTTCAA---TTCTGCC-----AGACA-C---C------AA-TAAA--GT-ATGG-CA--GAC-A-A-TAC-A---TAAG--A--A-TTA-CAA-TT-TGGC------A-AA--A------TGT-TG-T-CAG---AC--ATTTT-GAC-TGGCA------------------T-------A---------------A-----------TA-CA--AA--------CATCTG---TC-A
gi|20                         :                                  gAGTTTTTGAAAT-CAAATGT--GG---AG-TTG-----C-CA-G-AC-ATTTTG-T-CT-GCCA-T--TTTTGCAAA--TTCTG-C----CAGACA-C---C------AA-AAAA--GT-ATGG-CA--GAC-A-A-CTT-T---TAAG--A--A-TTA-gacattattgtttttaggcagactttcgcccatgtctgacaggatttggaaaa
gi|19                         :                                  gAGTTTTTCAAAT-CAAATGT--GG---AG-TTG-----C-CA-G-AC-ATTATG-T-CT-GCCA-T--TTTTTCAAA--TTCTG-C----CAGACA-C---C------AC-AAAA--GT-TCGG-CA--GAC-A-A-CTT-A---TAAG--A--A-TTA-caactatttgggaaaatacattttgactggcataataagataatctgtcggacattattgtttttaggcagacttttacccatgtctgacagggtttt
gi|22                         :                                  gAGTTTTCCAAAT-CAAATGT--GG---AG-T-G-----C-CA-GGACAATTT--------G---------TTCCAAA--TTCT--------------T---C------AA-TAAA--GT-ATGG-CA--GAC-A-A-TTT-A---TAAG--A--A-TTA-caactatttgggaaaatgttgtcagatgtttagagaatctgtcagacattattgtttttaggcagacttttgcccatgtctgacaagatttggaaaac
gi|27                         :                                  gAGTTTTCCAAAT-CAAATGT--GG---AG-T-TT----C-CA-G-AC-ATTTTG-T-CT-GCCA-T--TTTTTCAAA--TTCTG-T----CAGACA-C---C------AA-AAAA--GT-ATGG-CA--GAC-A-A-CTT-T---TAAG--A--A-TTA-caaattatttgggaaaatgtcagacattttgactggcaacagataagagaatctgtcagacatttattgttttataggcagacttttgcccatattgacaggatttgaaact
gi|12                         :                                   AGTTTTCCGAAT-CAAAAGT--GG---AG-TTG-----C-CA---AC-ATTTTA-T-CT-GACA-T--TTTTTCAAAT-TTCTG-C----CATACA-----C------AA-TAAA--GTAATGG-C---GACAA-caactatttgggaaaatgtcagacattttgactggca
gi|29                         :                                cagAGTTTTCCAAAT-CAAATGT--GG---AG-TTG-----C-CA-G-AC-ATTTTG-T-CT-GCCA-TA-TTTTGCAAA--TTCTG-C----CAGACA-C---C------AA-AAAA--GT-ATGG-CA--tacattaagaataaactatttgggaaaatgttgtcagacattttgacttggcatttactacaaaaaaatctgtcaagacattattgttgtaggctgactttgtccatgtctgacggattagaaaact
gi|11                         :                                 agAGTTTTCCAAAT-CAAATGTGGA----AG-T-G-----C-CA-G-ACATTTTTGCT-CT-GACA-T--TTTTGCACA--TTCTG-C----TAGACA-C---C------AATAAAA--GT-ATGGACAAGAACAG-A-TTT-A---T-AG--A--A-TTA-
gi|21                         :                                   AGTTTTCCAAATTCAAGCGT--A-----T-T-G-----C-CA-G-ACAGTT--G-T-CT-GCCATT--TTTTTCAAA---TCTGGC----GAGACA-C---A------CA-AAAA--GT-A--G-CA---ACAA----TC-A---TGAA--G--A-TTA-CAACTA-T--T--T---AGAA--T------TGT-TG-C--------A--ATTTTTGAC-TGGCA------------------T-------A---------------A-----------Acaactattcgggaaatagttgtcagcgacttttgactgtgcataaaataagagaatctgtcaagacattatatgttctaggcaagatttgttccattgtctgacaagccgatattggaaa
gi|28                         :                                 agAGTTTTCCAAAT-CAAATGT--GG---AG-TTG-----C-CA-G-AC-ATTTTG-GGCT-GACA-T--TTTCTCAAA--TTCTG-T----CAGACA-C---T------AA-TGAA--GT-ATGG-CA--GACAATA-TTTATATATAAG--A--A-TTA-taaagaatctgtcggacatattgtttttaggaactttcccagtctattaaaggatttggaaaac
gi|8                          :                                  gAGTTTTCCAAAT-CAAACGTG-G----AGTT-G-----G-CA-G-ACAACTTTcaactatttgggagaa
gi|26                         :                                 agAGTTTTCCAA-T-CAAATGT--GG---AG-TTG-----C-CA-G-AC-ATTTTG-T-CT-GACATT--TTTTTCGAA--ATCTGCCAGAACAGACA-ttaaaaaaaatatctctaaattggtatgtaataaagttaatgtgtcgagaaacaactttattttgtttgttttagttcaaggtaaagaattatccctattttgaaaattgtgtcgttttggatggcatagataagtacatctagcagactgttgtttttggtcagactgttacctatacaagtgatcgacaggatttggaaa
gi|18                         :                                   gGTTTTCATAAT-CAATGGT--G----GG-T-T-----C-CT-A-ACA--TTTG-T-TT-GCCA-T--TTTTCCAAA---TCTGC-------GAAC-C---C------AA-CGAAT-GT-ATTG-CA--GACA-----TG-T---TAAAAGA--A-TTA-atttatatagaatatcaactatttgggaaatgttgtcagaaattttgactggcataataagagaaatctgtcagacat
gi|7                          :                                     TTTTCCAAAT-CAAATGT--GG---AG-TTG-----C-CA-G-AC-ATTTTG-T-CT-GCCA-T--TTTTTCAAA--TTCTGCC-----AGACA-C---A------AA-AAAA--GT-ATGG-CA--GACAA-C-TTT-T---TAAA--A--AATTA-TTA-TC-T--C--T---A-AA--C------TGG-TA-C-CGT---AA--ATTTCTGAC-CAGTTAAAGATGACTC-------C-------A---------------A-----------AACCA--AA--------CGTTTA---TT-----------TTT--TT--C--AAATA-A-G-AA----CTACA-A-CT-A---TTTGGG---A-AA-ATATTGTCA--GACATT-T-T-GAC-TG-A-C-A--T--T--AT----------G-A-A-AA--TCTGTT-G-GAC-A-T-T---AT-T----------------CT----TTT-G-CCCA-T----G-T--CC-G--ACA-G---GAT-TTGGAAAACcaactatttggaacaatatgtttaagacatgttgactggataagagaatctgtcgaccattatgttttaggcagattaaaatttgtccattctacaagattttgaaa
gi|2                          :                                     TTTTCGCAAT-CAAACGT--G----AG-T-G-----C-CA-G-AC-ATTTTG-T-CT-GC-A-T--TTTTCCAAA--TTCTGC------AGACAAC---C------AA-AAAAAAGT-ATGG-CA--GACAA-C-TAT-T---AAAA--A--A-TTA-TTA-TC-T--C--T---A-AT--C------TGG-TAAC-CGTG--AA--ATTGTAGAC-CAGTTAAAGATCGTCAAATAAAGTG------A---------------A-----------AACCA--AAA-------CGGTTG---TT-TTG--TTT--TTT--TT--T---A-TA-A-G-AA----TTACA-A-C--A----TTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-GGC-A--T--A--ATAA--------G-AAG-AAATCCTGTC-G-GAC-A-A-TGTAAT-TGTT-TT--AGGC-AGACT----TTT-G-CCCA-T----G-T--CC-G--ACA-G---GAT-TTGGGAAA
gi|24                         :                                     TTTCCCAAAT--AGTTGT--A----AT-T-C-----T-TA-T-AAG---TTG-T-CT-GCCA-TACTTTTTTGGT--GTCTGGC-----AGA-A-T---TTG----AA-AAAA-----ATGG-CA--GACAA-A-ta
gi|20                         :                        agttgccagacatTTTCCCAAAT--AGTTGT--A----AT-T-C-----T-TA-A-AAG---TTG-T-CT-GCCA-TACTTTTTTGGT--GTCTGGC-----AGA-A-TTTGC------AA-AAA-------TGG-CA--GACAA-A-atgttgtcagacattttgactggcatagtaagacaatctgtcggacattattgtttttaggcagacttttgcccatgtctgacacgatttggaaaact
gi|25                         :  gagtttttgaaatcaaatgtggagttgccagacatTTTTCCAAAT-CAAACGT--GG---AG-TTG-----C-CA-G-AC-ATTTTG-T-CT-GCCA-T--TTTTTCAAA--TTCTG-C----CAGACA-C---C------AA-ACAA--GT-ATGG-CA--GAC-A-A-CTT-A---TAAG--A--A-TTA-atacattttgactggcataataagataatctgtcggacattattgtttttaggcagacttttacccatgtctgacagggtttt
gi|25                         :                                     TTTCCCAAAT--AGTTGT--A----AT-T-C-----T-TA-T-AAG---TTG-T-CT-GCCA-TACTTGTTTGGT--GTCTGGC-----AGAAT-T---T------GA-AAAA-----ATGG-CA--GACAA-A-caactatttgggaaaatgttgtcagacattttgactggcataataagagaatctgtcggacattattgcttttatgcaga
gi|27                         :     ttttccaaatcaaacgtggagttgccagacatTTTCCCAAAT--AGTTGT--A----AT-T-C-----T-TA-A-AAG---TTG-T-CT-GCCA-TACTTTTTTGGT--GTCTGAC-----AGAAT-T---T------GA-AAAA-----ATGG-CA--GACAA-A-atgttgtcagacattttgactggcataataagagaatctgtcggacattattgcttttatgcaga
gi|3                          :                              agttttccaaatcaaatgtggagtttccagacat-T-G-----C-CA-G-ACCATTT-G-T-CTCGCCA-T--TTTTTCAAA--TTCTG-C----CAGACA-C---CAAAGAAAA-AAAA--GT-ATGG-CA--GACAA-ACTTT-T---TTAA--A--A-TTATTTA-TC-T--TCAT---A-AA--C------TGGTTA-C-CGT---AA--A-TTTAGAC-CAGTT------------------TAAATGCCA---------------A-----------AACCA--AA--------CGTTTA---TT-ATGATTTT--TTT--TTTCC--GA-TA-T-G-AA----TTACACA-CT-A---TTTGGGCCAA-AA-ATGTTGTTA--AACA-G-T-T-GAC-T--G-C-A--T--A--ATAA--------GCA-G-AA--TCTATC-GAAACAA-TGT---AT-TGTT-TT-TAGAC-AGAC-----GTT-A-CCCA-T----GCT--CT-G--ACA-G---GAT-TTGGTAAatgtcagacattttgactggca
gi|24                         :                                                            gagt-T-G-----C-CA-G-AC-ATTTTG-T-CT-GCCATT--TTTTTCAAA--TTCTG-C----CAGACA-C---C------AA-AAAA--GT-ATGG-CA--GAC-A-A-CTT-A---TAAG--A--A-TTA-
gi|7                          :                                                                                   agtTTG-T-CT-GCCA-TACTTTTT------TTGTGTCTGG-CAGAAT-T---T------GA-AAAA-----ATGG-CA--GACAA-A-caactatttgggaaaatgttgtcagacattttgactggcatagtaagacaatctgtcggacattattgtttttaggcagacttttgcccatgtctgacacgatttggaaaact
gi|4                          :                                                      ttttccaaatcaaatgtggagttgccagacatTTG-T-CT-GCCA-TAACTTTT------TGCTGTCAGG-CAGAAT-T---T------GA-AAAA-----ATGG-CA--GACAA-A-ctttttaaaaaattattatctctaaactggtaccgtaaatttctgaccagttaaagatgactccaaaaccaaacgtttatttttttcaaataagaactacaactatttgggaaaatattgtcagacattttgactgacattatgaaaatctgttggacattattcttttgcccatgtccgacaggatttggaaaac
gi|23                         :                                                                    gagtttttcaatctatggcagttaccagcat-T--TTTCCCAAA--TTC-GTC----TAGACA-C---C------AA-TAAA--GT-ATGG-CA--GAC-A-A-TAC-A---TAAG--A--A-TTA-ctttttaaaaaaattattatctctaaactggtgccgtagattttaaacacagttaaagacgtatcgcaaaaccaaacgtttatttttttcaataagaaattacaactatttgggaaaaacgttgtcagacattttgactggtttaataagagatctgtcggacattattttttttaggtagactttggccatgattgacaggatttggaaaa
gi|8                          :                                                                                                                       aatttaaggtcggtccctactgtgacatatA--GT--TGG-CA--GACAA-C-TTT-T---TAAA--A--A-AAA-T-A-TC-T--C--T---A-AA--T------TGG-TA-T--GT---AATAAAGTTA-AT-GTGTC------------------G-------A---------------G-----------AAACA--A---------C-TTTA---TT-TTGTTTGT--TTTAGTT--CAAGG-TA-AAG-AA----TTATC-C-CT-A---TTTTGA---A-AA-TTGT-GTCG------TT-T-T-GGA-TG-G-C-A--T--AG-ATAA--------G-T-A-CA--TCTAGC-A-GAC-----T---GT-TGTT-TT-TGGTC-AGACT----GTT-A-CCTA-TACAAG-TGATC-G--ACA-G---GAT-TTGGAAAcaactatttgggaaaatgttgtcagacattgttgactggcgtaatacaaaaatctgtcaacattattgttttaggcaaacttttgacctgtctgacaggatttggaaaac
gi|16                         :                                                                                                                                                      agagttttccaaatcaaacgtggTT-T---TAAA--C--G-GTA---A-TCCT--C--T---A-AA--T------TGGGTA-CGCGTTAAAA--ATTTAGGAC-CAGCT------------------T-------AGAATGATGCCGCCGAA-----------AACCACAAA--------CGTTTA---TT--CGCATTTATTTT--TT--C--AA-TA-A---AC----TTACA-A-CTCA---TATGGG---AGAA-ATCTTGTTC--AACA------------------------A--ATAA--------G-A-G-AA--TTTGTC-G-GAC-A-T-G---AT-TGTTCTT-TAGGC--GACG----TTT-G--CCA-T----A-----A-G--ACG-G---TAT-TTGGAAAAC
gi|31                         :                                                                                                                                                                                                        C-T--C--T---A-AA--C------TGG-TA-C-CGT---AA--AATTTAGAC-CAGCT------------------A-------A---------------A-----------GA
gi|10                         :                                                                                                                                                                                                                                                       TTAGAC-CAGTT------------------A-------A---------------AGATGTGTTCATAACCA--AA--------CGTTTA---TT--T---TTT--TTT--TT--C--AA-TA-A-G-AA----TTAAA-A-CT-A---TTTG-------------TTGTCA--GACATT-T-T-GAC-TG-A-C-A--T--A--ATAA--------G-A-G-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CC-G--TCA-G---GAT-TTGGAAAACtgcgccgaaaa
gi|30                         :                                                                                                                                                                                                                                                                                              agagttttccaaatcaaatgtggagttgccagacattttcgatttctgccagacaacaaaaaagtataacaga--C--GT-TA-A-G-AACAATTTGCA-A-AT-A---CNTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-T--C--A--AAAA--------G-A-G-AA--TCTGTC-tc
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                 ggcagttggtaaA-TA-A-G-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--GTAA--------G-A-C-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--ACA-C---GAT-TTGGAAAAC
gi|13                         :                                                                                                                                                                                                                                                                                                      agttgccagacattttgtctgccatttttttcaaattctgccagacaccaaaaaagtatggcagacaacttA-TA-A-G-AA----TTACA-A-CT-A---TTTAGG---A-AA-TTGTTGTCA--GATATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-G-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--AAA-G---GAT-TTGGAAAACt
gi|14                         :                                                                                                                                                                                                                                                                               agagttttccaaatcaagcgtggagttgccagacagtttgtctgccatttttttcaaattctgcgagacaccaaaaaagtatggcagacaacttA-TA-A-G-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-T-A--T--A--AGAA--------G-A-G-AA--TCTGTC-A-GAC-A-T-T---AT-TGTT-TT-TAGAC-AGACT----TTT-G-CCCA-C----G-T--CT-G--ACA-G---GAT-TTGAAAA
gi|15                         :                                                                                                                                                                                                                                                                                agagttttccaaatcaaatgtggaactgccagtcattttgtctgacattttttcaaattctgccagacaccaatatactatggcagacaatttA-TA-A-G-AA----TTACA-A-CT------TTGGC---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--ATAC--------A-A-A-CA--TCTGTC-A-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTC-G-CCCA-T----G-T--CT-G--ACA-G---GAT-TTGGAAAACcc
gi|17                         :                                                                                                                                                                                                                                                                                  gagttttccaaatcaaatgtggaattgccaagacattttgtctgacattttttcaaattctgcagacaccaataaagtatgcagacaatacA-TA-A-G-AA----TTACA-A-TT-------TGGC---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--ATAC--------A-A-A-CA--TCTGTC-A-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTC-G-CCCA-T----G-T--CT-G--ACA-G---GAT-TTGGAAAAt
gi|23                         :                                                                                                                                                                                                                                                                                   gagttttccaaatcaaatgtggaattgccagacatttgtctgacattttttcaattctgccagacaccaataaagtatggcagacaatacA-TA-A-G-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATTGT-T-GAC-TG-G-C-G--T--A--ATAC--------A-A-A-AA--TCTGTC---AAC-A-T-T---AT-TG-T-TT-TAGGC-AAACT----TTT-G-ACC--T----G-T--CT-G--ACA-G---GAT-TTGGAAAAC
gi|19                         :                                                                                                                                                                                                                                                                                                 aatttaaggtcggtccctactgtgacatatttttcccaaattcgtctagacaccaataaagtatggcagacaatacA-TA-A-G-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GATGTT-T--------------------------A--------G-A-G-AA--TCTGTC-A-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--ACA-A---GAT-TTGGAAAAC
gi|22                         :                                                                                                                                                                                                                                                                                 gagtttttcaaatcaaatgtggagttgccagacattatgtctgccattttttcaaattctgccagacaccacaaaagttcggcagacaacttA-TA-A-G-AA----TTACA-AATT-A---TTTGGG---A-AA-ATGT---CA--GACATT-T-T-GAC-TG-G-CAA--C--AG-ATAA--------G-A-G-AA--TCTGTC-A-GAC-ATT-T---AT-TGTT-TTATAGGC-AGACT----TTT-G-CCCA-T----A-T---T-G--ACA-G---GAT-TTGAAA
gi|25                         :                                                                                                                                                                                                                                                                                                   gagttttccaaatcaaatgtggagtgccaggacaatttgttccaaattcttcaataaagtatggcagacaatttA-TA-A-G-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-G-AA--TCTGTC-G-GAC-A-T-T---AT-TGCT-TT-TATGC-AGAct
gi|21                         :                                                                                                                                                                                                                                                                                    ttttccaaatcaaacgtggagttgccagacattttgtctgccattttttcaaattctgccagacaccaaacaagtatggcagacaacttA-TG-A-A-GA----TTACA-A-CT-A---TTTAG------AA-TTGTTG-CA---AT-TT-T-T-GAC-TG-G-C-A--TA-A--ATAA----------A-G-AA--TCTGTC-G-GAC-A---T---AT-TGTT-TT-TAGG---AACT----TT----CCCA------G-T--CT-ATTAAA-G---GAT-TTGGAAAAC
gi|28                         :                                                                                                                                                                                                                                                                                      agagttttccaaattcaagcgtattgccagacagttgtctgccatttttttcaaatctggcgagacacacaaaaagtagcaacaatcA-TA-A-G-AA----TTACA-A-CT-A---TTTGGG---A-GA-A
gi|26                         :                                                                                                                                                                                                                                                                          gagttttccaaatcaaatgtggagttgccagacattttgggctgacattttctcaaattctgtcagacactaatgaagtatggcagacaatatttatatA-TATA-G-AA----TATCA-A-CT-A---TTTGGG---A-AA--TGTTGTCA--GAAATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-GAAA--TCTGTC-A-GAC-A-T-
gi|20                         :                                                                                                                                                                                                                                                                                                 gagttttccaatcaaatgtggagttgccagacattttgtctgacatttttttcgaaatctgccagaacagacaattt-TA-A-G-AA----TTACA-A-CT-A---TTTGGG---A-AA-AT----------ACATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-T-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-A-CCCA-T----G-T--CT-G--ACA-G---GGT-TT
gi|27                         :                                                                                                                                                                                                                                                                                 gagtttttgaaatcaaatgtggagttgccagacattttgtctgccatttttgcaaattctgccagacaccaaaaaagtatggcagacaacttt-TA-A-G-AA----TTACA-A-CT-A---TTTGGG---A-AA-A---TGTCA--GACATT-T-T-GAC-TG-G-C-A--t
gi|12                         :                                                                                                                                                                                                                                                                                  agttttccaaatcaaatgtggagtttccagacattttgtctgccattttttcaaattctgtcagacaccaaaaaagtatggcagacaacttt-TA-A-G-AA----T-A-A-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GACTTG-G-C-ATTT--ACTACAA--------A-A-A-AA--TCTGTCAA-GAC-A-T-T---AT-TG-T-TG-TAGGC-TGAC-----TTT-G-TCCA-T----G-T--CT-G--AC--G---GA--TTAGAAAAC
gi|18                         :                                                                                                                                                                                                                                                                                 cagagttttccgaatcaaaagtggagttgccaacattttatctgacattttttcaaatttctgccatacacaataaagtaatggcgacaatacatA-A-G-AA----TTACA-A-CT-A---TTTGGA---ACAATATGTT-TAA--GACATG-T-T-GAC-TG-G------------ATAA--------G-A-G-AA--TCTGTC-G-ACC-A-T-T---A--TG-T-TT-TAGGC-AGATTAAAATTT-G-TCCA-T------T--CT----ACA-A---GAT-TTTGAAAt
gi|11                         :                                                                                                                                                                                                                                                                                          gttttcataatcaatggtgggttcctaacatttgtttgccatttttccaaatctgcgaacccaacgaatgtattgcagacatgttaa-A-G-AA----TTACA-A-CT-A---TTCGGG---A-AA-TAGTTGTCAGCGAC-TT-T-T-GAC-TGTG-C-A--TAAA--ATAA--------G-A-G-AA--TCTGTCAA-GAC-A-T-T---ATATG-T-TC-TAGGCAAGA------TTT-GTTCCATT----G-T--CT-G--ACA-AGCCGATATTGGAAA
gi|29                         :                                                                                                                                                                                                                                                                                                                       agttttccaaatcaaatgtggaagtgccagacatttttgctctgacatttttgcacattctgctagacaccaataaaagtatggacaagaacagatttatGTTGCCA--GACATT-T-T-GTC-TG-C-C-A--T--A--TTTT--------G-C-A-AAT-TCTGCC-A-GAC-A-
gi|28                         :                                                                                                                                                                                                                                                                                                                                                                                                   agagttttccaaatcaaatgtggaGTTGCCA--GACATT-T-TGGGC-TG-A-C-A--T--T--TTCT--------C-A-A-AT--TCTGTC-A-GAC-A-C-T---AA-TGccaaaaaagtatggca
gi|36                         :                                                                                                                                                                                                                                                                                                                                                                                                              gagttttccaaatcaaatgtggaACATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-G-AA--TCTATaagtatggcagacaatatttatatataagaattacaactatttgggagaa
gi|32                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  aTT-TT-TAGGC-AGACT----TTT-G-CCAA-TA---G-T--CTGG--ACA-G---GAT-TTGGAAA
gi|33                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    T-TT-TAGGC-AGA-T----TTT-G-CCCA-T----G-TC-CT-G--ACATG---GAT-TTGGAAAAC
gi|35                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             C-AGACT----TTTTG-GCCA-T----G-T--CC-G--ACA-G---GAT-TTGGGAAAC

Unaligned ( gi|1 ): TTTTTATGGAAATTTTACCTACAACATCGGATCAACAAAATTGATGCGAAAGTTAACAGAAAATTTATACAAAGCCCTAAAATTACCAATGACACAAACAATTGTAAAATTTGGGGGGAAACCAGTCTCTTCGGGACAAACAAAAAGATGAACACAATATAAACAAAAATATAATAAATAAAACTAACACTACAACAAAACTAAATATACAAACATATTTACATTGCAAGTCACTTTTTTGTGTTCAATTCAATGATCATAAGTGGAGTAAATTAGGACACGTCCCATTTCTCCCATGGGCTGATCCACAATGACAAACTAAAATCTAAACATATATATGTTTAGTCAGATTTATTTTAATTAT
Unaligned ( gi|34 ): AGAGTTTCAAATCAAATGTGGAGTTACGCAGAGACCATTTT

lowQualScore                  :                                                                                                                                      2                                                                                                 1                                        111111111                                     1        5555555555555555555555555555555555555555555          11111111     5555555555555555555555555                                                                                                                                                                                                                           
lowQualScore                  :                                                                                                                 1        222 1 1 777 0 1 3 1 1 1 222 1 22    1 1 1  1    1 1   3  1    33       1     1  444444  1    33  1    1  22   1 555555 333333 5 33 1     1 777 666 2   333333333 2  999999999   4 22 2   999  33 1   2   2 1  5555555555555555555555555555555555555555555   0  44  55555555     2222222222222222222222222         55  4444444 1  1  3333     1 1  1 222      333 2  1         22      1 1 1   2  1 1 1 22 33 66    55555555 1 1 1  22      3 1   1 1 1 333  1  0 1  1     1     3333   1 1    1 5555 1 33  1 22   1 222   1         
lowQualScore                  :                                                                                                                 .        ... . . ... . . . . . . ... . ..    . . .  .    . .   .  .    ..       .     .  ......  .    ..  .    .  ..   . ...... ...... . .. .     . ... ... .   ......... .  .........   . .. .   ...  .. .   .   . .  ...........................................   .  ..  ........     .........................         ..  ....... .  .  ....     . .  . ...      ... .  .         ..      . . .   .  . . . .. .. ..    ........ . . .  ..      . .   . . . ...  .  . .  .     .     ....   . .    . .... . ..  . ..   . ...   .         
lowQualScore                  :                                                                                                                 6        777 5 5 000 7 5 0 5 5 5 666 5 00    5 6 6  6    5 5   1  5    77       5     5  444444  5    55  5    5  00   7 777777 666666 1 77 5     5 888 000 7   666666666 4  666666666   7 44 4   777  22 4   3   4 4  7777777777777777777777777777777777777777777   4  66  44444444     0000000000000000000000000         55  8888888 4  4  0000     4 4  4 555      999 9  4         00      4 4 4   9  4 4 4 00 55 55    44444444 5 5 5  11      2 7   7 7 7 000  7  8 6  6     5     4444   6 6    6 0000 6 88  6 22   6 888   6         
consensus                     :                                                                                                     AGTTTTCCAAAT-CAAATGTG---G-A-G---TTG-C-C-A-G-A---C-A--TTTT-G-T-CT-GCCA-T-TTT-TT-CAAA--TTCTGCC-AGACA-CC------AA-AAAA--GT-ATGG-CA--GACAA---A--T-T----TAT--A-AGAAT-T---A-TTA-TCT--C--T---A-AA-------C-TGG-TG-C-CGT---AA--ATTTTAGAC-CGGTN------------------T-------A---------------AAACCA--AA--------CGTTT-------A---TT---A--TG----TTTTTTTTC-GAT-------A-AG-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-G-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--ACA-G---GAT-TTGGAAAAC
Reference ( family-431 )      :                                                                                                     AGTTTTCCAAAT-CAAATGTG---G-A-G---T-G-C-C-A-G-A---C-A--TTTT-G-T-CT-GCCA-T-TTT-TT-CAAA--TTCTGCC-AGACA-CC------AA-AAAA--GT-ATGG-CA--GACAA---A--T-T----TNT--A-AGAAT-T---A-TTA-TCT--C--T---A-AA-------C-TGG-TA-C-CGT---AA--ATTTTAGAC-CGGTT------------------T-------A---------------AAACCA--AA--------CGTTT-------A---TT---A--TG----TTTTTTTTC-GAT-------A-AG-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-G-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--ACA-G---GAT-TTGGAAAAC
gi|10                         :                                                                                                     AGTTTTCCAAAT-CAAATGTG---G-A-G---TTG-C-C-A-G-A---C-A--TTTT----------------------CGAT--TTCTGCC-AGACA-AC------AA-AAAA--GT-ATA-------ACAG---A--T-------------------------------------T---A-GA-------C-CAG-T------T---AA--A-----GAT-GTGTT------------------C-------A---------------TAACCA--AA--------CGTTT-------A---TT------T-----TTTTTTTTC-AAT-------A-AG-AA----TTAAA-A-CT-A---TTTG-------------TTGTCA--GACATT-T-T-GAC-TG-A-C-A--T--A--ATAA--------G-A-G-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CC-G--TCA-G---GAT-TTGGAAAAC
gi|11                         :                                                                                                   agAGTTTTCCAAAT-CAAATGTG---G-AAG---T-G-C-C-A-G-A---C-A--TTTTTGCT-CT-GACA-T-TTT-TG-CACA--TTCTGCT-AGACA-CC------AATAAAA--GT-ATGGACAAGAACAG---A--T-T----TAT----AGAAT-T---A-tc
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                        -AG-AA----TTACA-A-CT-A---TTCGGG---A-AA-TAGTTGTCAGCGAC-TT-T-T-GAC-TGTG-C-A--TAAA--ATAA--------G-A-G-AA--TCTGTCAA-GAC-A-T-T---ATATG-T-TC-TAGGCAAGA------TTT-GTTCCATT----G-T--CT-G--ACA-AGCCGATATTGGAAAcaactattcgggaaatagttgtcagcgacttttgactgtgcataaaataagagaatctgtcaagacattatatgttctaggcaagatttgttccattgtctgacaagccgatattggaaa
gi|12                         : agttttccaaatcaaatgtggaagtgccagacatttttgctctgacatttttgcacattctgctagacaccaataaaagtatggacaagaacagatttatAGTTTTCCGAAT-CAAAAGTG---G-A-G---TTG-C-C-A---A---C-A--TTTT-A-T-CT-GACA-T-TTT-TT-CAAAT-TTCTGCC-ATACA--C------AA-TAAA--GTAATGG-C---GACAATACA--T--------T--A-AGAAT-
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                            cagT-------A-AG-AA----T-A-A-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GACTTG-G-C-ATTT--ACTACAA--------A-A-A-AA--TCTGTCAA-GAC-A-T-T---AT-TG-T-TG-TAGGC-TGAC-----TTT-G-TCCA-T----G-T--CT-G--AC--G---GA--TTAGAAAACaaactatttgggaaaatgttgtcagacattttgacttggcatttactacaaaaaaatctgtcaagacattattgttgtaggctgactttgtccatgtctgacggattagaaaact
gi|13                         :      cagagttttccgaatcaaaagtggagttgccaacattttatctgacattttttcaaatttctgccatacacaataaagtaatggcgacaatacatAGTTTTCCAAAT-CAAGCGTG---G-A-G---TTG-C-C-A-G-A---C-A--GTTT-G-T-CT-GCCA-T-TTTTTT-CAAA--TTCTGCG-AGACA-CC------AA-AAAA--GT-ATGG-CA--GAC-A---A--C-T----TAT--A-AGAAT-TACAA-CTA-TTTA-G--G---A-AA-------T-TGT-TG-T-CAG---AT--ATTTT-GAC-TGGCA------------------T-------A---------------At
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                            agAT-------A-AG-AA----TTACA-A-CT-A---TTTAGG---A-AA-TTGTTGTCA--GATATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-G-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--AAA-G---GAT-TTGGAAAACtaagagaatctgtcggacattattgtttttaggcagacttttgcccatgtctgaaaggatttggaaaac
gi|14                         :       agagttttccaaatcaagcgtggagttgccagacagtttgtctgccatttttttcaaattctgcgagacaccaaaaaagtatggcagacaacttAGTTTTCCAAAT-CAAATGTG---G-A-AC--T-G-C-C-A-G-T---C-A--TTTT-G-T-CT-GACA-T-TTT-TT-CAAA--TTCTGCC-AGACA-CC------AA-TATA--CT-ATGG-CA--GAC-A---A--T-T----TAT--A-AGAAT-TACAA-CTA-TTTG-G--G---A-AA-------A-TGT-TG-T-CAG---AC--ATTTT-GAC-TGGTA------------------T-------A---------------AGA
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                            agAT-------A-AG-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-T-A--T--A--AGAA--------G-A-G-AA--TCTGTC-A-GAC-A-T-T---AT-TGTT-TT-TAGAC-AGACT----TTT-G-CCCA-C----G-T--CT-G--ACA-G---GAT-TTGAAAAagagaatctgtcagacattattgtttttagacagacttttgcccacgtctgacaggatttgaaaacc
gi|15                         :        agagttttccaaatcaaatgtggaactgccagtcattttgtctgacattttttcaaattctgccagacaccaatatactatggcagacaatttAGTTTTCCAAAT-CAAATGTG---G-A-A---TTG-C-C-AAG-A---C-A--TTTT-G-T-CT-GACA-T-TTT-TT-CAAA--TTCTG-C-AGACA-CC------AA-TAAA--GT-AT-G-CA--GAC-A---A--T-A----CAT--A-AGAAT-T---A--CA-ACT--T--TGGCA-AA-------A-TGT-TG-T-CAG---AC--ATTTT-GAC-TGGCA------------------T-------A---------------ATA-CA--AA--------CATCTGTCAGACA---TT---AT-TG----TTTTTcc
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                             gAT-------A-AG-AA----TTACA-A-CT------TTGGC---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--ATAC--------A-A-A-CA--TCTGTC-A-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTC-G-CCCA-T----G-T--CT-G--ACA-G---GAT-TTGGAAAACaggcagactttcgcccatgtctgacaggatttggaaaact
gi|16                         :                                                                                                                                                                                    gagttttccaaatcaaatgtggaattgccaagacattttgtctgacattttttcaaattctgcagacaccaataaagtatgcagacaatacCT--C--T---A-AA-------T-TGGGTA-CGCGTTAAAA--ATTTAGGAC-CAGCT------------------T-------AGAATGATGCCGCCGAAAACCACAAA--------CGTTT-------A---TTCGCA--TT----TATTTTTTC-AAT-------A-A--AC----TTACA-A-CTCA---TATGGG---AGAA-ATCTTGTTC--AACA------------------------A--ATAA--------G-A-G-AA--TTTGTC-G-GAC-A-T-G---AT-TGTTCTT-TAGGC--GACG----TTT-G--CCA-T----A-----A-G--ACG-G---TAT-TTGGAAAACt
gi|17                         :                                                                                      ttttaaacggtaatcAGTTTTCCAAAT-CAAATGTG---G-A-A---TTG-C-C-A-G-A---C-A--TTT--G-T-CT-GACA-T-TTT-TT-CAA---TTCTGCC-AGACA-CC------AA-TAAA--GT-ATGG-CA--GAC-A---A--T-A----CAT--A-AGAAT-T---A-CAA-TTTGGC------A-AA-------A-TGT-TG-T-CAG---AC--ATTTT-GAC-TGGCA------------------T-------A---------------ATA-CA--AA--------CATCTGTCAGACA---TT---AT-TG----TTTTT
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                             gAT-------A-AG-AA----TTACA-A--------TTTGGC---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--ATAC--------A-A-A-CA--TCTGTC-A-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTC-G-CCCA-T----G-T--CT-G--ACA-G---GAT-TTGGAAAAaggcagactttcgcccatgtctgacaggatttggaaaa
gi|18                         :            gagttttccaaatcaaatgtggaattgccagacatttgtctgacattttttcaattctgccagacaccaataaagtatggcagacaatacGTTTTCATAAT-CAATGGTG---G---G---T-T-C-C-T-A-A---C-A--TTT--G-T-TT-GCCA-T-TTT-TC-CAAA---TCTGCG-A-AC--CC------AA-CGAAT-GT-ATTG-CA--GAC-----A--TGT----TAA--A-AGAAT-T---A-
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                -------A-AG-AA----TTACA-A-CT-A---TTTGGA---ACAATATGTT-TAA--GACATG-T-T-GAC-TG-G------------ATAA--------G-A-G-AA--TCTGTC-G-ACC-A-T-T---A--TG-T-TT-TAGGC-AGATTAAAATTT-G-TCCA-T------T--CT----ACA-A---GAT-TTTGAAAcaactatttggaacaatatgtttaagacatgttgactggataagagaatctgtcgaccattatgttttaggcagattaaaatttgtccattctacaagattttgaaa
gi|19                         :              gttttcataatcaatggtgggttcctaacatttgtttgccatttttccaaatctgcgaacccaacgaatgtattgcagacatgttaaAGTTTTTCAAAT-CAAATGTG---G-A-G---TTG-C-C-A-G-A---C-A--TTAT-G-T-CT-GCCA-T-TTT-TT-CAAA--TTCTGCC-AGACA-CC------AC-AAAA--GT-TCGG-CA--GAC-A---A--C-T----TAT--A-AGAAT-T---A-
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                             gAT-------A-AG-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GATGTT-T--------------------------A--------G-A-G-AA--TCTGTC-A-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--ACA-A---GAT-TTGGAAAACcaactatttgggaaaatgttgtcagatgtttagagaatctgtcagacattattgtttttaggcagacttttgcccatgtctgacaagatttggaaaac
gi|2                          :           gagtttttcaaatcaaatgtggagttgccagacattatgtctgccattttttcaaattctgccagacaccacaaaagttcggcagacaacttTTTTCGCAAT-CAAACGTG-----A-G---T-G-C-C-A-G-A---C-A--TTTT-G-T-CT-GC-A-T-TTT-TC-CAAA--TTCTGC--AGACAACC------AA-AAAAAAGT-ATGG-CA--GACAA---C--T-A----TTA--A-AAAAT-T---A-TTA-TCT--C--T---A-AT-------C-TGG-TAAC-CGTG--AA--ATTGTAGAC-CAGTTAAAGATCGTCAAATAAAGTG------A---------------AAACCA--AAA-------CGGTT-------G---TT---T--TG----TTTTTTTTT--AT-------A-AG-AA----TTACA-A-C--A---TT-GGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-GGC-A--T--A--ATAA--------G-AAG-AAATCCTGTC-G-GAC-A-A-TGTAAT-TGTT-TT--AGGC-AGACT----TTT-G-CCCA-T----G-T--CC-G--ACA-G---GAT-TTGGGAAA
gi|20                         :                                                                                                     AGTTTTTGAAAT-CAAATGTG---G-A-G---TTG-C-C-A-G-A---C-A--TTTT-G-T-CT-GCCA-T-TTT-TG-CAAA--TTCTGCC-AGACA-CC------AA-AAAA--GT-ATGG-CA--GACAA---C--T-T----T-T--A-AGAAT-T---A-ta
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                              gT-------A-AG-AA----TTACA-A-CT-A---TTTGGG---A-AA-AT----------ACATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-T-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-A-CCCA-T----G-T--CT-G--ACA-G---GGT-TTcaactatttgggaaaatacattttgactggcataataagataatctgtcggacattattgtttttaggcagacttttacccatgtctgacagggtttt
gi|21                         :        gagtttttgaaatcaaatgtggagttgccagacattttgtctgccatttttgcaaattctgccagacaccaaaaaagtatggcagacaactttAGTTTTCCAAATTCAAGCGT------A-T---T-G-C-C-A-G-A---C-A--GTT--G-T-CT-GCCA-T-TTT-TTTCAAA--TCTGGCG-AGACA-CA------CA-AAAA--GT-A--G-CA---ACAA--------T----CAT--G-AAGAT-T---A-CAACTAT--T--T---AGAA-------T-TGT-TG-C--------A--ATTTTTGAC-TGGCA------------------T-------A---------------AAt
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                                                            agAT-------G-AA-GA----TTACA-A-CT-A---TTTAG------AA-TTGTTG-CA---AT-TT-T-T-GAC-TG-G-C-A--TA-A--ATAA----------A-G-AA--TCTGTC-G-GAC-A---T---AT-TGTT-TT-TAGG---AACT----TT----CCCA------G-T--CT-ATTAAA-G---GAT-TTGGAAAACtaaagaatctgtcggacatattgtttttaggaactttcccagtctattaaaggatttggaaaac
gi|22                         :              agagttttccaaattcaagcgtattgccagacagttgtctgccatttttttcaaatctggcgagacacacaaaaagtagcaacaatcAGTTTTCCAAAT-CAAATGTG---G-A-G---T-G-C-C-A-GGA---C-A--ATTT-G-T---------------TC-CAAA--TTCT----------TC------AA-TAAA--GT-ATGG-CA--GAC-A---A--T-T----TAT--A-AGAAT-T---A-
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                             gAT-------A-AG-AA----TTACA-AATT-A---TTTGGG---A-AA-ATGT---CA--GACATT-T-T-GAC-TG-G-CAA--C--AG-ATAA--------G-A-G-AA--TCTGTC-A-GAC-ATT-T---AT-TGTT-TTATAGGC-AGACT----TTT-G-CCCA-T----A-T---T-G--ACA-G---GAT-TTGAAAcaaattatttgggaaaatgtcagacattttgactggcaacagataagagaatctgtcagacatttattgttttataggcagacttttgcccatattgacaggatttgaaact
gi|23                         :                                                                                                gagttttccaaatcaaatgtggagtgccaggacaatttgttccaaattcttcaataaagtatggcagacaattt-T-TTT-CC-CAAA--TTCGTCT-AGACA-CC------AA-TAAA--GT-ATGG-CA--GAC-A---A--T-A----CAT--A-AGAAT-T---A-ct
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                aatttaaggtcggtccctactgtgacatatAT-------A-AG-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATTGT-T-GAC-TG-G-C-G--T--A--ATAC--------A-A-A-AA--TCTGTC---AAC-A-T-T---AT-TG-T-TT-TAGGC-AAACT----TTT-G-ACC--T----G-T--CT-G--ACA-G---GAT-TTGGAAAACcaactatttgggaaaatgttgtcagacattgttgactggcgtaatacaaaaatctgtcaacattattgttttaggcaaacttttgacctgtctgacaggatttggaaaac
gi|24                         :                                                      aatttaaggtcggtccctactgtgacatatttttcccaaattcgtctagacaccaataaagtatggcagacaatac---T-G-C-C-A-G-A---C-A--TTTT-G-T-CT-GCCA-T-TTTTTT-CAAA--TTCTGCC-AGACA-CC------AA-AAAA--GT-ATGG-CA--GAC-A---A--C-T----TAT--A-AGAAT-T---A-
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                           agtAT-------A-AG-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--GTAA--------G-A-C-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--ACA-C---GAT-TTGGAAAACcaactatttgggaaaatgttgtcagacattttgactggcatagtaagacaatctgtcggacattattgtttttaggcagacttttgcccatgtctgacacgatttggaaaact
gi|25                         :                                agttgccagacattttgtctgccatttttttcaaattctgccagacaccaaaaaagtatggcagacaacttTTTTCCAAAT-CAAACGTG---G-A-G---TTG-C-C-A-G-A---C-A--TTTT-G-T-CT-GCCA-T-TTT-TT-CAAA--TTCTGCC-AGACA-CC------AA-ACAA--GT-ATGG-CA--GAC-A---A--C-T----TAT--A-AGAAT-T---A-t
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                              AT-------A-AG-AA----TTACA-A-CT-A---TTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-G-AA--TCTGTC-G-GAC-A-T-T---AT-TGCT-TT-TATGC-AGAcaactatttgggaaaatgttgtcagacattttgactggcataataagagaatctgtcggacattattgcttttatgcaga
gi|26                         :            ttttccaaatcaaacgtggagttgccagacattttgtctgccattttttcaaattctgccagacaccaaacaagtatggcagacaacttAGTTTTCCAA-T-CAAATGTG---G-A-G---TTG-C-C-A-G-A---C-A--TTTT-G-T-CT-GACATT-TTT-TT-CGAA--ATCTGCC-AGA--------------------------A-CA--GAC-A---A--T-T----TAT--ATAGAATATCA-A-CTA-TTT--G--G---G-AA-------A-TGT-TG-T-CAG---AA--ATTTT-GAC-TGGCA------------------T-------A---------------A
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                                             gAT-------ATAG-AA----TATCA-A-CT-A---TTTGGG---A-AA--TGTTGTCA--GAAATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-GAAA--TCTGTC-A-GAC-A-T-taagagaaatctgtcagacat
gi|27                         :                        gagttttccaatcaaatgtggagttgccagacattttgtctgacatttttttcgaaatctgccagaacagacaatttAGTTTTCCAAAT-CAAATGTG---G-A-G---T-TTC-C-A-G-A---C-A--TTTT-G-T-CT-GCCA-T-TTT-TT-CAAA--TTCTGTC-AGACA-CC------AA-AAAA--GT-ATGG-CA--GACAA---C--T-T----T-T--A-AGAAT-T---A-
gi|27                         :                                                                                                                                                                                                                                                                                                                                                                                                                                               T-------A-AG-AA----TTACA-A-CT-A---TTTGGG---A-AA-A---TGTCA--GACATT-T-T-GAC-TG-G-C-A--caactatttgggaaaatgtcagacattttgactggca
gi|28                         :         agttttccaaatcaaatgtggagtttccagacattttgtctgccattttttcaaattctgtcagacaccaaaaaagtatggcagacaactttAGTTTTCCAAAT-CAAATGTG---G-A-G---TTG-C-C-A-G-A---C-A--TTTT-G-GGCT-GACA-T-TTT-CT-CAAA--TTCTGTC-AGACA-CT------AA-TGAA--GT-ATGG-CA--GACAAT--A--T-TTATATAT--A-AGAAT-T---A-
gi|28                         :                                                                                                                                                                                                                                                                                                                                                                                                                                             gAT-------A-AG-AA----TTACA-A-CT-A---TTTGGG---A-GA-Acaactatttgggagaa
gi|29                         :  gagttttccaaatcaaatgtggagttgccagacattttgggctgacattttctcaaattctgtcagacactaatgaagtatggcagacaatatttatatAGTTTTCCAAAT-CAAATGTG---G-A-G---TTG-C-C-A-G-A---C-A--TTTT-G-T-CT-GCCA-TATTT-TG-CAAA--TTCTGCC-AGACA-CC------AA-AAAA--GT-ATGG-CA--
gi|3                          :                                                                                                                        ag---G-A-G---TTG-C-C-A-G-A---C-C--ATTT-G-T-CTCGCCA-T-TTT-TT-CAAA--TTCTGCC-AGACA-CCAAAGAAAA-AAAA--GT-ATGG-CA--GACAA---ACTT-T----TTT--A-A-AAT-T---ATTTA-TCT--TCAT---A-AA-------C-TGGTTA-C-CGT---AA--A-TTTAGAC-CAGTT------------------TAAATGCCA---------------AAACCA--AA--------CGTTT-------A---TT---A--TGATTTTTTTTTTCC-GAT-------A-TG-AA----TTACACA-CT-A---TTTGGGCCAA-AA-ATGTTGTTA--AACA-G-T-T-GAC-T--G-C-A--T--A--ATAA--------GCA-G-AA--TCTATC-GAAACAA-TGT---AT-TGTT-TT-TAGAC-AGAC-----GTT-A-CCCA-T----GCT--CT-G--ACA-G---GAT-TTGGTAA
gi|30                         :                                                                                                                                                                                                                                                                                                                                                                                                                                           C-GTT-------A-AG-AACAATTTGCA-A-AT-A---CNTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-T--C--A--AAAA--------G-A-G-AA--TCTGTC-
gi|31                         :                                                                                                                                                                                                                                                                   ggcagttggtaaCT--C--T---A-AA-------C-TGG-TA-C-CGT---AA--AATTTAGAC-CAGCT------------------A-------A---------------AGA
gi|32                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TT-TT-TAGGC-AGACT----TTT-G-CCAA-TA---G-T--CTGG--ACA-G---GAT-TTGGAAAtgcgccgaaaa
gi|33                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          T-TT-TAGGC-AGA-T----TTT-G-CCCA-T----G-TC-CT-G--ACATG---GAT-TTGGAAAAC
gi|34                         :                                                                                                     AGTTT--CAAAT-CAAATGTG---G-A-GT--T-A-CGC-A-G-AGACC-A--TTTT-
gi|35                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 agC-AGACT----TTTTG-GCCA-T----G-T--CC-G--ACA-G---GAT-TTGGGAAAC
gi|36                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-G-AA--TCTATt
gi|4                          :                                                                                                    aAGTTTTTCAA-T-C---TATG---GCA-G---TTA-C-C-A-G-----C-A--TTTT-G-T-CT-GCCA-T-TTT-TT-CAAA--TTCTGCC-TGACA-GC------AA-AAAG--TT-ATGG-CA--GACAA---C--T-T----TTTAAA-AAAAT-T---A-TTA-TCT--C--T---A-AA-------C-TGG-TG-C-CGT---AG--ATTTTAAACACAGTTAAAGACGTATCG------C-------A---------------AAACCA--AA--------CGTTT-------A------------------TTTTTTTC-AAT-------A-AGAAA----TTACA-A-CT-A---TTTGGGA--A-AA-ACGTTGTCA--GACATT-T-T-GAC-TG-G-T-T--T--A--ATAA--------G-A-G--A--TCTGTC-G-GAC-A-T-T---AT-TTTT-TT-TAGGT-AGAC-----TTT-G-GCCA-T----G-A--TT-G--ACA-G---GAT-TTGGAAAA
gi|5                          :                                                                                                    gAGTTTTCCAAAT-CAAATGTA-----A-G---T-G-C-C-A-G-A---CGA--TTTT-G-T-CT-GCCA-T-TTT-TT-CAAA--TTCTGCCCAGACA-CC------AA-AAAA--GT-ATGG-CA--GACAA---A--T-T----TTT--A-AAAAT-T---A-TTA-TCT--C--T---A-AA-------C-TGG-TA-C-CGT---AA--ATTTTAGAC-CAGTT------------------T-------A---------------AAACCA--AA--------CGTTT-------A---TT---A--TGGG--TTTTTTTTC-GAT-------A-AG-AA----TTACA-A-CT-A---CTTGGG---A-AA-ATGTTGTCA--GACATT-T-T-GAC-TG-G-C-A--T--A--ATAA--------G-A-G-AA--TCTGTC-G-GAC-A-T-T---AT-TGTT-TT-TAGGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--ACA-G---GAT-TTGGAAAAC
gi|6                          :                                                                                                     AGTTTTCCAAAT-CAAATGTGATCG-A-G---T-T-C-CCA-G-A---C-A--TTTT-A-T-CT-GCCA-T-TTT-TT-CAAA--TTCTGCC-AGACA-CC------AA-AACA--GT-ATGG-CA--GA-AA---A--C-T----TTT----------------------------T---A-AA-------C-TGG-TA-C-CGT---AA--ATTTCTGAC-CAGTC------------------C-------A---------------AAACCA--AA--------TGTTT-------AGTTTT---ACTTA----TTTTTTTTC-AAT-------A-AG-AA----TT---------------TGGG---A-AA-ATGT---CA--GACATT-T-TTGAC-TA-T-C-A--T--AC-ATCATGTATTATG-A-A-AA--TCTGTC-G-GAC-A-T-C---AT-TGTT-TT-T-TGC-AGACT----TTT-G-CCCA-T----G-T--CT-G--ACA-G---GAT-TTGGAAAAC
gi|7                          :                                                                                                      gTTTTCCAAAT-CAAATGTG---G-A-G---TTG-C-C-A-G-A---C-A--TTTT-G-T-CT-GCCA-T-TTT-TT-CAAA--TTCTGCC-AGACA-CA------AA-AAAA--GT-ATGG-CA--GACAA---C--T-T----TTTA-A-AAAAT-T---A-TTA-TCT--C--T---A-AA-------C-TGG-TA-C-CGT---AA--ATTTCTGAC-CAGTTAAAGATGACTC-------C-------A---------------AAACCA--AA--------CGTTT-------A------------------TTTTTTTCAAAT-------A-AG-AA----CTACA-A-CT-A---TTTGGG---A-AA-ATATTGTCA--GACATT-T-T-GAC-TG-A-C-A--T------TAT--------G-A-A-AA--TCTGTT-G-GAC-A-T-T---AT-T----------------CT----TTT-G-CCCA-T----G-T--CC-G--ACA-G---GAT-TTGGAAAAC
gi|8                          :                                                                                                     AGTTTTCCAAAT-CAAACGTG---G-A-GT--T-G-G-C-A-G-A---C-AACTTTT-
gi|8                          :                                                                                                                                                                                                                    agA--GT--TGG-CA--GACAA---C--T-T----TTT--A-AAAAA-A---A-T-A-TCT--C--T---A-AA-------T-TGG-TA-T--GT---AATAAAGTTA-AT-GTGTC------------------G-------A---------------GAAACA--A---------C-TTT-------A---TT---T--TG----TTTGTTTTA-GTTCAAGGTAA-AG-AA----TTATC-C-CT-A---TTTTGA---A-AA-TTGT-GTCG------TT-T-T-GGA-TG-G-C-A--T--AG-ATAA--------G-T-A-CA--TCTAGC-A-GAC-----T---GT-TGTT-TT-TGGTC-AGACT----GTT-A-CCTA-TACAAG-TGATC-G--ACA-G---GAT-TTGGAAAtaaaaaaaatatctctaaattggtatgtaataaagttaatgtgtcgagaaacaactttattttgtttgttttagttcaaggtaaagaattatccctattttgaaaattgtgtcgttttggatggcatagataagtacatctagcagactgttgtttttggtcagactgttacctatacaagtgatcgacaggatttggaaa
gi|9                          :                                                                              agagttttccaaatcaaacgtggAGTTTTCCAAAT-AAAATGTG---G-A-ACATT-G-CGC-A-G-A---C-A--TTTT-------------T-TTT-TT-AAAAAATTCTGTC--GACA-C----------AAAA--AT-ATGG-CA--GACAA---C--T-T----TTT--A-A---------A-TTA-TCT--C--T---A-AAAGCTGTGCATGG-TA-C-CGTCA-AA--GATTTAGAC-CAGTT------------------T-------A---------------AAACCA--AAACCAAAACCTTTT-------A---TTC--A--TGGTT-TTTTTTTCC-GAT-------A-AG-AA----ATACA-A-AT-ATCGTTTGGG---A-AA-----TGTCA--AACATT-TCT-GACTTG-G-C-A--T--A--ATAA--------G-A-G-