lowQualScore : 1111111111111111111111111111111111111111111111111111 11111111111111111111111111111 111111111111111111111 1111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111 111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 3333333 333333333333 22 3333 666666 222 11 222222 111111 11111 111 77777777777777777777777777777 1 22222 111 22222 3333 1111111111111111111111111111111111111111111111111111 111 11 1 2 22 55555555555555555555555555555555555555 111 555555555555555 1 33333333333 1 11 11 1111 2222222 00000000000000000000000000000 2 11 22222 11 33333333 11 44444444 1 1 33333 999999999999999999999999999999999 22222 22 6666666666666666 111 1 666666666666666666 1 3333333333333333 111 44444444444 11 11 11 1 1 1 222222 44444444 1 1 111 11111 1 1 1 222 11 111111111111111111111 1 11 1 33 1 3333333333333333333 33 4 1 1 1 33333333 1 1 444444 1 11111 11111 66666666666666666666666666666 222222 1111 1 1111 11 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 44444444444444 1 1 1 333 22222222 1 1 8888888888 1 33 1 1 11 11 1 111 1 1 2 4444444444444444444444444 1 44444444444444444 1 6666666 4444444 3333333 11 11 22222 111111111111111111111111111111111111111111111111 11 11 2222222 111 55555555555555555555555555555555555555555555555555555555555555555555555555 111 22222222222222222222222 1 1 44 11111 222 1 44 44444
lowQualScore : 33 4 4 4 55 0000000 44 55 4 4 4 555555555555 66 7 9999 33 888 5 2222 222222 888 33 5 5 5 5 5 5 666666 666666 5 44444 555 6 99 1 11111111111111111111111111111 9 1 44444 6 000 00000 1111 1 9999999999999999999999999999999999999999999999999999 6 6 111 6 6 22 5 5 1 7 1 0 2 6 0 22 6 66666666666666666666666666666666666666 111 6 444444444444444 0 8 88888888888 7 33 11 5 7777 7777777 88888888888888888888888888888 5 0 33 3 44444 33 22222222 22 00000000 3 3 33333 4 000000000000000000000000000000000 22222 00 2222222222222222 777 77 0 222222222222222222 0 6666666666666666 777 66666666666 33 3 33 3 88 0 0 0 555555 8 66666666 8 8 6 0 5 777 77777 5 6 8 8 1 9 444 33 9 444444444444444444444 3 33 3 6 22 3 7777777777777777777 00 0 3 3 6 00000000 3 3 333333 3 88888 77777 00000000000000000000000000000 66 9 3 888888 4444 0 4444 33 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 22222222222222 3 3 0 111 3 22222222 0 0 2 5555555555 33 11 9 0 4 2 66 5 0 33 3 22 0 777 3 0 0 3 5555555555555555555555555 3 88888888888888888 3 1 9999999 0000000 8888888 0 33 99 3 00000 8 8 333333333333333333333333333333333333333333333333 11 11 0 3333333 5 0 8 444 66666666666666666666666666666666666666666666666666666666666666666666666666 8 8 444 8 77777777777777777777777 0 0 0 33 0 44444 999 0 0 11 11111 6 3 6
lowQualScore : .. . . . .. ....... .. .. . . . ............ .. . .... .. ... . .... ...... ... .. . . . . . . ...... ...... . ..... ... . .. . ............................. . . ..... . ... ..... .... . .................................................... . . ... . . .. . . . . . . . . . .. . ...................................... ... . ............... . . ........... . .. .. . .... ....... ............................. . . .. . ..... .. ........ .. ........ . . ..... . ................................. ..... .. ................ ... .. . .................. . ................ ... ........... .. . .. . .. . . . ...... . ........ . . . . . ... ..... . . . . . . ... .. . ..................... . .. . . .. . ................... .. . . . . ........ . . ...... . ..... ..... ............................. .. . . ...... .... . .... .. ................................................................................................................................................................................................................................................................. . .............. . . . ... . ........ . . . .......... .. .. . . . . .. . . .. . .. . ... . . . . ......................... . ................. . . ....... ....... ....... . .. .. . ..... . . ................................................ .. .. . ....... . . . ... .......................................................................... . . ... . ....................... . . . .. . ..... ... . . .. ..... . . .
lowQualScore : 88 0 0 0 55 0000000 11 55 0 0 0 111111111111 11 0 4444 44 888 7 1111 444444 333 66 7 7 7 7 7 7 999999 444444 7 33333 666 7 22 7 11111111111111111111111111111 8 7 55555 7 222 33333 3333 7 7777777777777777777777777777777777777777777777777777 7 7 777 7 7 55 0 0 4 3 7 8 5 7 3 55 7 88888888888888888888888888888888888888 777 7 000000000000000 0 0 00000000000 0 88 00 0 0000 0000000 88888888888888888888888888888 2 2 88 2 55555 88 00000000 22 00000000 3 3 33333 0 333333333333333333333333333333333 00000 77 8888888888888888 555 88 0 888888888888888888 0 0000000000000000 555 22222222222 88 2 88 2 88 0 0 0 000000 0 00000000 0 0 0 8 4 222 66666 8 0 0 0 0 0 000 88 8 000000000000000000000 3 33 3 7 77 3 3333333333333333333 00 0 3 3 0 33333333 3 3 000000 3 55555 22222 55555555555555555555555555555 55 2 2 888888 8888 0 8888 88 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 77777777777777 3 3 0 222 2 88888888 0 0 5 8888888888 55 00 2 5 2 5 22 0 5 88 0 00 0 555 2 0 0 7 0000000000000000000000000 3 00000000000000000 3 0 3333333 0000000 2222222 2 88 22 2 00000 0 0 000000000000000000000000000000000000000000000000 00 00 8 8888888 0 8 0 000 44444444444444444444444444444444444444444444444444444444444444444444444444 0 0 000 0 44444444444444444444444 8 0 0 00 2 88888 888 0 2 22 00000 7 7 7
consensus : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TTGTGAAC-TGC--AAAG--GATTTTCT----TCACTG-AGT---TAA-AC-C--GTAAAAAAA-----CCGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G--A-T-CCC------G-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------ATC--C--CAATCG--GA--GCAAAAAATAG--AAACG-ACCGGAAA--CGAGGCA--T-TTTT--C-TGTGACG-TCA-TGGA-ACGTTCTAT----GTAG-A-GC--G--CTAC-----------TAT-GGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTNG-TTAA-TGG--AGTGACG-N-A-A-GC-NT--------TGTTTC----ATC-CGATTTCAGA---A-GTATNAAG--ACAA-TT--CTAA-TATC-GAATTA-----------GGTCAACAACCG--CAATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT------------CCC-GGT---GTGTAC-ATCTT-GTCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----AA-GAAA-CCTTTTG----AT-GCT-TT-ATA-----ATNCCGCGT-AG-TAC-ACCGCAGCAA-GATAA-CG-A-A--AATGGT-A-A-TAG-AAAAATT-A-N-GAC--TTTG--AAAT---ACATNTATT-GTT-TC---GCAAAT-GA-G-ATTA-ATAAA--TT--A--TGA-TG-GGTTGT---GAT----AAATAAAT--TTGATTT--TTTTATAACGAA-AGA-G-AAAGT--A--CGAC-TA---TT---CTTG-AAT-G-ATGAAAACTATATNT-TGGTTTTGGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAAT--GA-ATA--ATTA-CATCA-GCTTA-TGAATCCATAAT-AGGTTGTTG-GATTA-GGA-A-----TACG--CA---ATTTCAA--AGACATCGAA-TT-TAG-AAGAGA--AAG---TA-CTGAC-AGTA----ATTGAT-AGAAAA---A-GTA-T--GGCTTCG-T-A--CACA--ATCTA-ATTGCTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TNA----GGT----A-CG-ATAAN--------------TAAT-TT--GAAT-TGACAT--N---GAG--AC-CCGA--A-TC--GTGTT--CGA-----ATTTA-GGTA-GAG-AAA----A-----T-TG--------TAAAC-C---ATT------TTACTT------TGGCA-GGCG---NATG-GCT-ACGAA-N-TAA-G-------GCTATCGGAAGAGA--AAACTANC-CCGCCA-TAAG-AGCCCC-TTT--CGCTTATATATAATTG-GTTGGA-CTGGACT-C--ACGG--CTGGACTCTAGATGAGGAAGAAATTGCATCTG-ATAATCCCCGA--ACCANCCT-CGTCG-TCAGGAC---CAG-TG-ATAGGAGGG-AACGC-CGA----T---ACAAC-GG-----TGTCCA-GACTGC-TG--TG---CAA-ACCGTGCGTTA-TGGACGT---GGAGTCGCAC--ATGCAGACAATCAATC-AA--N-AATTCT--AATTTTACATTTTA-----A-CT-TTTA-------------TCCTAATTTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---T---ATGACAA-CGTC---GAA--------ATAG-AGTA-ACAC-------GG-CCCGGGNATT---AGATCCCGTG--TTATCAG---------AGG-ACG-G---TATA-CAC--AAA-CCCTCACGCTT-CC--TCCGGCAATTCACA-CCTGCAT-AAGATT--GGCTCCGC-CCC-CACCTAAACTTACCTGAGGTAAA-CC-GGTGGTCGAAAANCTCGGCTA
Reference ( gi|2 ) : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TTGTGAAC-TGC--A--G--GATTTTCT----TCACTGGAGT---TAA-AC-C--GTAAAAAAA--CAACCGCATCAAAAA-TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G--A-TGCCC------G-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------ATC--C--CAATCA--AA--GCAAAAAATAG--AA-CG-ACCGGAAA--CGAGGCA--T-TTTT--CATGTGACGCTCAATGGA-ATGGTCTATC---GTAG-ACGC--G--CTA------------TAT-GGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAACTGG--AGTGATG-A-A-A-GC-AT--------TGTTTC----ATC-CG--TTCAGA---A-GTATAAAT--ACAA-TTC-CTAA-TATC-GAATTA-----------GGTCAACATCCG--CAATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT-----------GTCC-GGT---GTGTA--ATCTTTGTCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----GA-GAAA-TTTTTTG----ATGGCT-TT-ATA-----ATACCGCGTCAG-TAC-ACCA-AGCCATTATAAACG-A-A--AATGGT-A-A-TAG-AAAAATT-A-G-AACTTTTTG--AAAT---ACATCTATT-GTT------GCAAAT-GA-G-ATTA-ATAAA--TG--A--TGA-TG-GGTTGT---GA-----AAATACAT--TTGATTT--TTTTATAACGAA-AGA-G-AAAGT--A--CGAC-TA---T----CTTG-AAT-G-ATGAAAACTATATCT-TGGTTTTAGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATTTGACATACAATTA-CATCAAGCTTA-TGAATTTATAAT-AGGTTGTTGTAATTA-GGA-AATAAGTACGAACA--GATTTCAACCAGACAT-GAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGAT-AGAAAA---A-GTA-T--GGCTTCG-T-A--CACA--ATCT--ATTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------T-TTTTGATTAGG-A-TAA----GGT----A-CG-ATAGG--------------TAAT-TT--GAAT-TGACATC-C---GAG--AT-TGGA--A-TC--GTGTT--CAA-----A-TTA-GGT---AG-AAA----A-----T-TG--------TAAAC-C---ATT------TTACTT------TGGCATCATG---CATG-GCT-ACGAA-GGTAA-ATAGCAACGCTATCGGAAGAGA--AAATTATT-CAGCCA-TAAG-AGCCCC-TT---CGCTTATATATAATTG-GTTGGA-CTGGACT-TGGATGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGAATAATCCCCGA--ACCAACCC-CGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAAATGC-CGA----T---AC-----------TGTCCA-GAC----TG--TG---CAATACCGTGCGTTA-TGGATGTCCGAAGGTCGCAC--ATGC-GACAATCAATC-AA--C-AATTCT--AATTTTGCATTTTA-----A-CT-TTTA-------------TCCTAATTTT--ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---T---ATGACAA-CGTC---GAA--------ACAG-AGTT-GTAC-------GG-CTGGGGGATT---AG-TCCCATGT-TTAT------------AGG-ACG-G---TATA-CAC--AAA-CCCTCACGCTT-CC--TCCAGCTATTCACA-CCTGCATGAAGATT--GCTTCCG--TCC-CACCTAAACT--CCTGAGGTAAG-C--GGTGGGCGAAAACCTCGGCTA
gi|1 : AGCG--TTCGTACT-GC--AATGGGCTGGCAAA-AATAT--TT-TTA-TTGTGACCGTGC--AAAG--GATTTCTTACGTTCACTG-AGCCTCTAATAC-CCCGTAAAAAAC--CG--CGCATCAAAAAATCGATGCGCAGAAATA-A-C-AGA-GTT-ATT-G--A-T-CCC------GACGAT-----GTAGCC-TATTTCA-CCTGTGATCTCAAA---------ATCGCCGACAATCG--AGCCACAAAAATTAGCAAA-CG-ACCGAAAA--CGAGGCA--T-CTTT--C-TG-GACG-TCA-TG-A-ATGTTCTAT----GTAG-AAGA--GA-CTA------------AGTCGGGACACGATAG---ACATGTTGTCCTGCTGTTGTTAAAACGAGTCGGTTAAATGGCGAGTGATG-G-AGA-GC-GGCGGGGGGGTGGTTC----ATC-CGATTTCAGA---ATGTATTATG--ACAAATTCTCTAA-TATCCGAATGGAGGGGGGGGGGGGTCAACAACCG--CAATCTTTGT--ATGTCTGAGGGGGGCT-GAGC-TAATCCGGGGGGGGCGCCCAGGCTGGGGGTACTATCTTGGTCAATTCCGTGAACC--GAGCAGCAA-GGTTAGTG-----AAAGAAA-CTCTTTA----A--GCT-TT-ATA-----ATGCCGCGT-AGCTACCACCGCAGC-ATGATAA-CGCA-ACTAATGGTGA-A-TAG-AAAAATTTA-T-GACTTT--G--AAAT---ACATATATTTGTTTTTCTTGCAAATTGA-GGATTA-ATAAA--TCCTA--TGAATG-GGTTGTTCTGA-----AA-TAAATAATTGATTT--TTC-ATAACGAACAGA-GGAAAGT--AGCCGACCTAATTT----CTTG-AATTGCATGAAACCTATATCTATGGTTTGGGCGGACGTACATTT-ATTGCT-TGCGAAATTAAGA-CCGTGGAAAAAATAAT--GAAATA--ATTAACATCA-GCTTAATGAATCTATAAT-AGGTT-TTG--ATTA-GG----------CAACCA---ATTTCAA--AGACATTGAAGTTGTAGTAACAGACGAAGAGTTA-CTGAC-AGTA-----TTGATTAGAAAACATA-GTAGTCAGGCTTCGGT-AACCACA--TCCT--CTTGTGCAGCGGGCTCGCTATATACAAA------ACA-A--ATGCACGGCATCAACTAAA--TCCC--AT-----GAATTG------------------TGTTTTGATTAGG-ATTTA----GGCCTTAA-CG-ATAAGGTGGGGGTGGGGGTTAAT-TTTGGAAT-TGACATA-G---GCG--AT-CCGA--ATTC--ATGTT--CAA-----ATTTA-GGT---AG-AAA----AAAGGGTGTG--------GAGACGC---ATT------TTACTTGGGGGGGGGCA-GACG---GATG-GTTGACGAA----AA-A-------GCTATCGGAAGAGA--AATCTGAC-CCGCCATTAAG-AGCCCC-TTTG-CGCTTATG---AATGG-ATTGGA-CTCGACT-C-CACGG--C----------GTGAGGAAGAAATTGCATCTG-ATAATCCTTGAACACCAACCCTCGTCGTTCAGGAC---CAGTTG-ATAGGAAGG-AATGC-CGACTATT---ACAACAGA-----TGTCCAGGAC----TGCATGTGCCAAAGCCGTGCGTTATTGGACGT---AGAGTCGCACTTATGCAGACAATCAATCAAA--CAAATTCT--AATTTTACATTTTA-----A-CT-GT---------------------TTTT--AC----CTAAGTTAAAATAG-TTTACTTCGAAACATGGTTTTGACT---T---ATGACAA-CGTC---GA--------------------CAC-------GGCCTGAGGCATTTAGAG-T-CCATGTATCAG------------CGA-ACG-GGTATATA-CAC--AAACCCCTCACG
gi|24 : taacAGGG--T-C-TA-T-GC--AATG------CAAA-AATAT--TA-T-A-TTGTG-AC-TGCAAA--G--GATTat
gi|20 : AGGGATTTC-GA-T-GCCAAATGG----------AATATCGTT-T-AATTGTG-AT-TGCA-A--A--GGTTTTC-----TCACTG
gi|5 : taaG--CTC-TA-T-GC--AATGT-----CAAATAATAT--T----A-TTGTGA-C-TGC--AAAG--GAATT-CT----TCACTGA--T---TAA-ACAC--GTAGAAAAA---AGCC-CATCAAAG--TCGA-GCGCAGAAATACA-C-ATA-GAT-AATAG--AGTGTCCAAACGTG-TAATCAGTGGTGGTT-T-TTTTAGCTTGT--TTCCAAA---------A---------ATCATCGA--GCAAAAA-TAG--AAACGCACCAGAAAAACGAGGCA--T-TTTTTTC-TGTGACGC---ATGGA-ATGTTCTAAT---GTAG-G-GCCGG--CTAC-----------TAT-GG-AGAC-ATAAGACACA-GTT-TCTGCTT-TT-TTAAAATAGTTCG-TTAA-TGG--AGTGA-G-A-A-ACGCTAT--------GTTTTC----ATCACGA-TTTAAAGCTA-GCATCAAG--AGCA-TT--CTAATTAT--GAATTA-----------GGTCAACAACCGCTCAATCTTTTTTAATGT-TGAGG----CTAG--C-TAAT-----------CTC---GT---GTGT---ATATTCGTCAATTTCTTGTCTCTTGAGCG---ACAGT--GTGTCCGAAA-GAAA-CCTTTTGTTGCATCGCTATTAATACACTCATCCCGTGCGAGATA--ACGACAGCAA-TAGAATAG-ATA--AATGGT-ATACTAG--AAAATT-A-ATGAC---TTG--AAACATGACATTAATT-ATT------G---AT------ATTA-ATATA--TG--AATTTA-TGAGGTTGT---GATAACGAGAT-CAT--TTAATTTTCTTTTAT-ACGAA-AGATG-AAAGTAGA--CGAC-TA---TATTCTTTG-AAT-GAATG-AAACTATATAT-GGGTTTTGGC--ACTATCATTTCATTG-T-T----AATAGATAGT-ATA--AAAAAAAATactattaagt
gi|3 : gtTC-TA---GC--AATG------CAAA-AATAT--TTAT-A-TT-TGTAT-GGC--AAAG--GATTT-CT----ACACGTGAGT---TGA-AA-C--GTAAAAAA------CCACATCAAAA--TCG--GGCCGAAAATA-AGC-AGAAGTTCATG-GCAG-TTCCC------G-TAAT-----G-GCCA-T-TTTTA-CCCAT--TT-CAAAGAGTGCCCAATC--C---AATCG--GA--GCGCAAAATAG--AAACG-ACCCGAAA--------------TTT--CTGGCGACG-TCA-TGGA-ATGTTC-GT----GTAG-A-GC--GGCCTAC-----------TAT-GGGAGAC-ATAG---ACA-GTT-TCTGGTT-TT-T--AAACACGTCG-TTTAATGG--AGTGATGCA-C-A-GT--C--------TGTTTC----AT--CGATTTCAGA---A--TATATAG--ACAA-TT--CTAA-TATC-GAATTA-----------GGTCAACaa
gi|7 : ggTC-TA-T-GC--AATAG-----AAAG-AATAT--TT-C-A-TTGTGA-T-TGC--A--AAAGATTTTCT----TCACTA-AGT---TCA-AT----GTAAAAAAAACCCACCGCAT-AACAA-TCG--GAGCAGAAACT-G-C-AGA-GTT-ATC-G--A--GCCC------G-CAAT-----GTGGCT-A-TTTTA-CCTGT--TCTCAAA---------AT---C--CAATC---GA--GC--AAAATAGA-AA-CT-TCCGAAAA--TGAGGCT--G-GTCT--GATGTGACG-TC-------ACAGTATATCTCTGTAGAACG---G--CTAG-----------TAT-GGGAGAC-AGAG---ACA-GTT-TC-GGCT-TT-TT-GAAC-AGTAG-TTAA-TGG--AGTGACA-C-A-A-GC-TT--------TGTTTC----ATC-CGA-TTCGGA---A-GTAT---TCGGCAA-TT--CTAA-TACC-GAATTA-----------GGccccccctccccccacccccccccccccccccccctccaccttttttatgtctgaggcttgcaatccgtgtgttcgtgtcaacctcgtgtttcgttgcagtgtgaagaaacttttttgatgctttataataccgcgtaatacaccagcagagatatacgaagatgctaatagcaaaaatcatgaatttgacaaatacatctattgttgtcgcaaatgatgattctataaatcttatgatcggtttcgaataaaaatttgatgttttatacgaaagagaaagtagcactattcctgtaatgatgaaaactatatatggctttgcactgacatttaagtgtatgtataagaagacagtgaaaaaaataataatgaatccataatcaggttgttggattacggacactaagtacgacaataatgtcaaacggacatcgaatttagagagaaatacctgacgagtattgatagaaaaacgtatgcttcgtaacaacatctaattgcggctcgctatagacaacaaactatgaacgtatcaactaaaactcctaattaaagaatgagcagcaccagcccggcctgttttataggataatcatgttaccgatattaatgttgaatatgactagttactcgaacatcctgtgttacctaatgaggtacgaaaaaatcgataaccgctaaacatttgattcttactttagatggtgcaacatgagccacgaagtta
gi|13 : gTC-TA-T-GC--AGTGG------AAT-AACAT--TT-T-A-TTGTGA-T-TGC--AAAG--GATTTTCC----TCACTG-AGT---TAA-AT----GTAAAAAA------CTGCATCAAAA--TCG--GCGCAGAAATA-A-CAAGA-GTT-ATT-G--A-T-CCG------G-TAAT-----GTGGCT-A-TTTTA-CCTGT--TTTCAAA---------g
gi|26 : ggTC-TA-T-GC--AATG------CAAA-AATAT--TT-T-A-TTGTG-AC-TGC--A--
gi|23 : ggTC-TA-T-GC--AATGG------AAT-AACAA--TT-T-A-TTGTG-AT-TGCAAA--G--CATTTTCC----TCACT-GAGT---Taa
gi|10 : gC-TA-TTGC--AATG------CAAA-AATAT--TT-T-A-TTGTGA-C-TGC--AAAG--GATTTCCT----TCACTG-AGT---TAA-AC----GTAAAAAA------CCGCATCAAA---TCG--GCGCAGAAATA-A-C-AAG-TTT-ATT-G--A-T-CCA------G-TAAT-----GTGGCTAT-TTTTA-CCTGT--TTTCAAA--------------T--CAATC---GA--GC-AATAATAGA-AA-TG-ACCGGAAA--CGAGGCATTT-TTTT--C-TGTGACG-TC-ATGGATAT-GTCTAT----GTAG-A-GC--GA-CTACTTATGGGTACTTAT-GGGAGAC-ATAG---ACA-GTT-TCT-GCT-TT-tga
gi|19 : T----TCACTG-AGT---TAA-AC----GTAAAAAAA-------GCATCAAAA--TTG--GCGCAGAAATA-A-C---A-GTT-ATT-G--A-T-CCC------A-TAAT-----GTGGCTAT-TTTT
gi|15 : AATCG--A---GCAAAAA-TAG--AAACG-ATTGAAAA--CAAGGCA--GGTCTT--C-TGTGACG-TCA-TACA-ACG-TCTCT----GTAT--TGC--GT-CTAA-----------TAT-GGGAGAC-ATGG---ACA-TTT-TCT-GCT-TT-TTAAA
gi|17 : CT-TT-TTAAA-CAA-TAG-TTAATGGGG-AGTGACG-CCA-A-GC-CT--------TGTTTTCAAAATC-CGA-TTCAGA---A-GTATc
gi|18 : CT-TT-TTAAA-CAA-TAG-TTAATGGGG-AGTGACG-GCA-A-GC-CT--------TGTTTTCAA-ATCGCGATTTCAGA---A-GTATtattggcgaattctgagaacgaat
gi|25 : C-GAATTA-----------GGTCAACAACCG--CAATCTTATT--AGGTGTGAGG----CT-tattggcgcaaattctga
gi|16 : ACAACCG--CAATCTTTTT--ATGTCTGAGG----CT-A--CCTAAT-------------CC-G-T---GTGTAT-ATCTT-GTCAATTTCGTCTCTC--GAGCG---A-GGT--GTG-----AA-GAAA-CCTTTT
gi|3 : TTTTT--ATGTCTGAGG----CTTG--C--AAT-------------CC-G-T---GTGT----TCGT-GTCAACCTCGTGTTTC--G-TTG---C-AGT--GTG-----AA-GAAACTTTTTTG----ATG-CT-TT-ATA-----ATACCGCGT-AA-TAC-ACC--AGCAGAGATATACG-A-A--GATGCT-A-A-TAGCAAAAATC-ATG-AA---TTTGACAAAT---ACATCTATT-GTTGTC---GCAAAT-GATG-ATTCTATAAATCTT--A--TGA-TC-GGTTTC---GA-----ATAAAAAT--TTGA-TG--TTTTAT-ACGAA-AGA-G-AAAGT--A--GCAC-TAT--T----CCTGTAAT-G-ATGAAAACTATATA--TGGCTTT-GC--ACTGACATTTAAGTG-TATGTATAAGA-AGA-CAGTG--AAAAA-AAT---A-ATA-----------------A-TGAATCCATAATCAGGTTGTTG-GATTACGGACACTAAGTACG-ACAATAATGTCAAACGGACATCGAA-TT-TAG--AGAGA--AA----TACCTGACGAGT-----ATTGAT-AGAAAA---ACGTA-T---GCTTCG-T-A---ACAACATCTA-ATTG--C----GGCTCGCTATAGAC-AA------CAA-ACTATGAAC-GTATCAACTAAAACT-CCTAATTAAAGAA--TGAGCAGCACCAGCCCGGCCT-GTTTTAT-AGG-A-TAATCATGTT----ACCG-ATA-T--------------TAATGTT--GAATATGAC-T-------AGTTAC-TCGAACA-TCCTGTGTTACCTA-----A-TGA-GGTACGAA-AAA----A-----T-CGATAACCGCTAAA--C---ATTTGATTCTTACTT------TAG-ATGGTGCAACATGAGCC-ACGAA-GTTAt
gi|4 : ggtctagcaatgcaaaaatatttatatttgtatggcaaaggatttctacacgtgagttgaaacgtaaaaaaccacatcaaaatcgggccgaaaataagcagaagttcatggcagttcccgtaatggccatttttacccatttcaaagagtgcccaatccaatcggagcgcaaaatagaaacgacccgaaatttctggcgacgtcatggaatgttcgtgtagagcggcctactatgggagacatagacagtttctggtttttaaacacgtcgtttaatggagtgatgcacagtctgtttcatcgatttcagaatatatagacaattctaatatcgaattaggtcaacccccccctccccccacccccccccccccccccccctccacctTG--AAAT---ACATACATT-GTT------GCAA-T-GAAG-ATTA-ATAAA--TT--A--TGA----GGTTGT---GAT----AAATA-AT--TTGATTT--TTTTATA-CGAA-AGA-G-AAAG------CGAC-TA---TT---CTTG-AAT-G-ATGAAA-CTATATTA-TGGTTTT-GC--ACTA-CATTT-ATTG-T-TGCGAAATA-AGA-C-GTG--AAAAATAATT-GACATA--ATTA-CATCA-GCTTA-TGAATT-ATAAT-AGGTTGTTGTGATTA-GGA-A-----TA---------ATTCCAAC-AGACATTGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTATTCTAGTGAT-AGAAAA---A-GTA-T--GGCTTCG-TAA--CAC---ATCTAAATTG-TC----GGCTCGCTA-ATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TTA----GGT----A-CG-ATAGG--------------TAAT-TT--GAAT-TGACAT--A---GGG--AT-C-AA--A-TC--GTGTT--CAA-----ATTTA-GGT---AGAAAA----A-----G-TG--------TAA---C---ATT------TTACTT------T-GCA----A---CATG-GCT-ACGAA-A-------------GCTATCGGAAGAG---AAATTACC-C-GCCA-TAAG-AGCCCCTTT---CGCTTATA-A----TG-GATGGA-CTGCA-------------TGGACTCTAGATGAGGAAGAAATTGCATCTG-ATAAT-CCTGA--ACCACCCT-CGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAATCGC-T-A----T---ACAATCAGATGAATGTCCA-GACTGCATG--TG---CAA-ACCGTGCGTTA-TGGACGTC--GAGGTCGCAC--ATGCAGACAATCAATC-AAATA-AATTCT--AATTTTACATTTTA-----A-CTGTTTA--------------CCTA-----------------ATTAAAAT-GTTTTACTTC--AACAT--TTTTGACT---T---ATGAC-A-CGTC---GA--------------------CAC-------GG-CCTGGGGATT---AGATCCCATG--TTATC-----------AGG-ACG-G---TATA-CACAAAAA-CCCTCACGCTTCCC--TCCAGCTATTCACA-CCAGCAC--AAATT--GGCTCCGC-CCC-CACCTAAACT--
gi|21 : g--CGAC-TA---TT---CTTG-AAT-G-ATGAAA-CTATATCT-TGGTTTTA-C--ACTA-CATTT-ATTG-T-TGCGAAATtaac
gi|6 : agAAA---A-ATA-T--GACGTTG-T-A---GCAT-ATCT---TTTCTC----GGCTCACC-TA-ACAAATCTTTACAACA--ATACAC-GCGTGAATTAAA--T-CC--AT-----TA--TG------------------TGTTTTGATTAGATA-TAT----AGT------CGCATAAT--------------TAA---T--GAAT-CTA-ATCACAGGGAG--GCATCGA--A-TC--GTGTT--TGATATGTA-TTACGGTAGGAG-AAAAAATA-----T-TG--------TAAGC-CATAATT------TTACTT--------GCA----G---AATG-GCT-ACGGATTGTAACGGCGCAACGCATTCG--AGAGACTGAACCATCACCGCAA-TAAGCAGCACT-TTTCGCGCT----TATAATTGAATGGGA-CTGGACT----------CTAGATCCT-GATGATCA------TG-ATCT-----ATCTC--A--CCCTACCT-CGTCG-TCAGGACAGAC-G-TGAATAGGAGTG-AATGCGCGA----CGTGAA-----------TTTCCA-GACTGT-TG--TG---CA--ACCGTG
gi|14 : CCCC-TT---CGCTTATATATAAT-G-GTTGGAACTGGACTCTGGATGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTG-ATAAT-CCCGA--ACCACCCT-CGTCG-TCAGGAC---CAG-TG-ATAtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatataatcaatatattcctgataaaattatataaaaaatttttgctaattttttacaattatacatttattttaccttaacacttttgacaacgtcgtagaaatagaggtagcacgatccgggaaataaatcccgtcttatcaagaaagtatgcgcaattcacacctgcataagattggctccgcccttacttaaacttacctaaggtaaaccagtttgtcaaaaagctcggccttt
gi|9 : ----TG--TG---CAG-ACTGTGCGTTA-TGGATG------AGTTGCAC--A----GACAATGAATC-A-------TTTT--ATTTTT---TTTTACATAAATCT-TTCT-------------TCCTAATTTTT-ATAATTATATATTTA--TA-TTTTACTTT--AACAT--TTTTGACT---TATAATGACAA-CGTT---GAGT-------ACAG--GTA-ACAC-------AG-CTCGGGTA-----AGATCCCGTG--TTATCAGAA-------AGGTACATG---TATA-CAC--AAG-CTCTCAC-CCT-CC--CCCGGCAATTCACA-CCTGCGT-AAGATT--GGCTCCGCCCCC-CACCTAAACTTACCTGAGGTAAA-CT-GGTGGGTCGAAACCTCGGCTA
gi|8 : gttCAATA-GA--T-AATTATGAAATTTTG-ACT--------A-CT-TTTACAGCAAAACACTCTCCTTTTTTT---TAAT-ATATATT----T-GTTTTACTTC--AA-AT--ATTTGACTACAT---AT-ACAATCGTT---GAAGATATAAAATAGCAGTA-ACACAGTAACAGG-CCCAGGGATT---AGATTCCGTGA-TTATCAGCGTGTTATCAGG-ACG-G---TATAACAC--AA--CTCTC-CACTG-CCCTTCCAGCAATTCACACCCTGCATT-ATATTTAGCTCCAC--CCC-CATATAAACTTACCTGAGGTAAACC--GGGGGTCGAAAAATCCGGcagagtcatg
gi|6 : ttttggattagaatagtaA-----A-TT-TTTG---------------CTAATTTTTTACAATTATACATT----TA-TTTTACCTT--AACAC--TTTTG-------------ACAA-CGTCGTAGAA--------ATAG-AGGTAGCAC-------GATCCGGGAAATA---AA-TCCCGT-C-TTATC-----------AAG-AAA-G---TATG-CGC--A--------------------------ATTCACA-CCTGCAT-AAGATT--GGCTCCG--CCCTTACTTAAACTTACCTAAGGTAAA-CCAGTTTGTCAAAAAGCTCGGCtctttaaacaatagaattaccct
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTACAGAAACATAGAGGTAATGCAGGTAGCACGATGAATACCCCGTATATTGAGGAATTAAGGTACACACCGGCTAGCAGGGGCCCTTCAGGCCTCACATCTACCACAAATTAGCTCCGCTCCTATTTAACTTACCTTAGGAAAACCGACAGGTTGAGAACATAGATTTTGAAAGTGAAATCATAGTTTT
Unaligned ( gi|12 ): GTATGAAAACGAAGAGGTACAGCAGGTTACAAAGGTACCATCCTGTGCATTCAGAAAATATATTCACAAGCTATATTCCTTCGGCGCATCACACCTACTTAGAATTAGCCCCGCCCCTCATTTTACTTACCTGGGGAAAACCGATT
Unaligned ( gi|22 ): AATATGCTGAAGGGAGGGGGGGGGGGACAAACAACCAAAAATCAATATCTGTATGTATGA
Alignments
lowQualScore : 11 2222222 2222 2222 3333333333 11 11 111 11111 11111 111 4444444444444444444 22 1111 11111 1 1 33333333333333333333 111 111 1 1 22 1111 2222222222 222222 1 1111 111 33333333333 11 1111 22 666666666666666666 222 1 1111111 11 22222 1 3333333 22222 1111 1 1111 11111 222222222222 11111 1 1 111111 111 555555 11 2 1111 1111111 11 1111 222 1 11 11 1 11 1 111 11 1 1 111 11 44444444 1 1 1 1 1 22 1 999999999999999999999999 22222 1 1 1 2222 11 2222 1 1 33333 1 111 11 3333333333333333333333333 222222 11 11 11 66666666666666666666666666666 1111 222222 444444444444444 11111 2222 11 111 11 11 11 1111 1 4444444444444444 111 2222222222 66666666666666666666 7777777777777777 1 2222 11 111 1 1 111 1 6666666666666 1 11 111 22 1 7777777777777777777 1 22 11111 1111 1 1111111 3333333 222222222 111 222222 11111111 2222222 111 1111 666666666666666666666666 1111111 111 333333333333333333333333333 222222222222222 1 111
lowQualScore : 11 3 3 3 55 5555555 3 55 3 3 3 3333 5 8888 4 4 777 5 6666 5 8888888888 11 11 5 5 5 5 5 5 5 555 5 22222 5 22222 222 5 77 0 8888888888888888888 00 7777 1 5 5 77 77777 77 5 55 5 5 0 5 3 5 5 5 1 66666666666666666666 000 5 000 5 5 88 4 4 0 5 0 7 1 1 1 33 4 4444 5 2222222222 222222 1 1 77 5 2222 6 111 6 6 5 11111111111 11 99 2 4444 22 88 8 888888888888888888 000 6 5555555 8 11 88888 8 3 0 2222222 55555 1 2222 0 6666 55555 000000000000 22222 0 0 1 1 222222 444 1 8 333333 33 4 8 7777 6666666 8 55 2222 66 0 555 0 11 11 8 6 0 88 6 99999 6 6 6 6 6 1 111 00 99 99 3 6 6 3 777 11 6 33333333 3 0 0 0 0 0 2 22 0 333333333333333333333333 88888 0 0 0 4444 33 0000 0 0 66666 0 444 8 8 11 8 4444444444444444444444444 11 5 0 333333 8 11 8 11 8 11 11111111111111111111111111111 0 8 8 1 7777 555555 8 0 888888888888888 55555 5555 0 99 00 222 11 8 11 11 4 8 4444 5 8 8 8 6 7777777777777777 666 8888888888 22222222222222222222 8 8 4444444444444444 0 1111 33 9 444 0 0 88 8 0 111 5 8 8 1111111111111 5 6 1 8 3 8 11 1 8 444 0 8 8 22 0 2 3333333333333333333 0 22 33333 8 8888 6 4444444 6666666 111111111 333 99 222222 3 77777777 1 5555555 99 99 111 4444 6 444444444444444444444444 8888888 33 5 1 888 000 222222222222222222222222222 5 111111111111111 77 66 7 5 5 5 0 5 5 5 0 1 777 0 1
lowQualScore : .. . . . .. ....... . .. . . . .... . .... . . ... . .... . .......... .. .. . . . . . . . ... . ..... . ..... ... . .. . ................... .. .... . . . .. ..... .. . .. . . . . . . . . . .................... ... . ... . . .. . . . . . . . . . .. . .... . .......... ...... . . .. . .... . ... . . . ........... .. .. . .... .. .. . .................. ... . ....... . .. ..... . . . ....... ..... . .... . .... ..... ............ ..... . . . . ...... ... . . ...... .. . . .... ....... . .. .... .. . ... . .. .. . . . .. . ..... . . . . . . ... .. .. .. . . . . ... .. . ........ . . . . . . . .. . ........................ ..... . . . .... .. .... . . ..... . ... . . .. . ......................... .. . . ...... . .. . .. . .. ............................. . . . . .... ...... . . ............... ..... .... . .. .. ... .. . .. .. . . .... . . . . . ................ ... .......... .................... . . ................ . .... .. . ... . . .. . . ... . . . ............. . . . . . . .. . . ... . . . .. . . ................... . .. ..... . .... . ....... ....... ......... ... .. ...... . ........ . ....... .. .. ... .... . ........................ ....... .. . . ... ... ........................... . ............... .. .. . . . . . . . . . . ... . .
lowQualScore : 00 6 6 6 00 5555555 6 00 6 6 6 1111 2 5555 0 0 888 0 9999 0 0000000000 99 99 0 0 0 0 0 0 0 666 0 55555 0 55555 555 7 99 1 0000000000000000000 33 1111 7 7 7 99 11111 99 7 99 7 7 7 7 7 4 7 7 4 99999999999999999999 000 7 000 7 7 00 4 4 1 0 1 9 0 4 4 66 0 9999 7 0000000000 444444 4 4 99 7 1111 7 777 7 7 7 77777777777 00 22 5 2222 55 88 0 000000000000000000 222 0 8888888 0 00 00000 0 2 0 5555555 00000 0 8888 0 5555 55555 888888888888 00000 0 0 2 0 888888 000 0 0 666666 66 0 0 0000 8888888 0 66 6666 22 8 000 6 00 44 0 0 8 33 7 33333 7 7 7 7 7 3 222 33 22 55 3 7 7 2 222 00 0 22222222 2 0 0 0 5 0 5 55 0 222222222222222222222222 55555 5 0 0 2222 88 0000 0 0 88888 0 000 0 0 00 0 0000000000000000000000000 66 6 8 000000 0 00 0 00 0 00 22222222222222222222222222222 8 0 0 0 0000 888888 0 8 000000000000000 66666 0000 8 00 22 666 00 0 00 00 6 0 8888 6 0 0 0 4 8888888888888888 888 0000000000 00000000000000000000 0 0 2222222222222222 0 2222 88 8 888 0 0 88 0 8 888 4 0 0 2222222222222 6 8 8 0 2 0 00 0 0 000 8 0 0 00 0 5 2222222222222222222 0 55 88888 0 2222 0 6666666 7777777 000000000 333 22 222222 2 00000000 8 8888888 22 22 777 2222 7 666666666666666666666666 6666666 44 7 0 999 555 111111111111111111111111111 0 222222222222222 99 11 6 7 7 7 1 7 7 7 4 7 555 8 0
consensus : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TTGTGA-C-TGCAAAGGATTTTCT----TCAC-TG-AGT---TAA-AC-C--GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GC--G--CTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGG-GAGTGACGN-A-A-GCNT--------TGTTT-C----ATC-CGATTTCAGA--A-GTATTA-NGAC-AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGA----GGCT--GC-TAAT-CC--------CG--------GTGTGTAT-ATCTT-GTCAATTTCGTGTCTC--G---AGCGA-GGT--GTG-----AAGAAACTTTTT-GATG-C-------TTTATA-----ATACCGCGT-AG-TA-CACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAA-TTATGACTTT--G--AAATA---CATNTA-TTGTT----T-GCAAA-TGA-GATTA-ATA----AA--T--T-ATG-ATGGGTTGTG-AT-AAATAAAT-A-TTGATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T--TCTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTGGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-G-AC--ATAATT-ACATCA-GCTT-ATGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA---CA-ATTTCAAC-A--GACATCGAA-TT-TAG-AAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAA-CACA--ATCTAA-TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TAA----GGT----A-CG-ATAA--------------TTAAT-TT--GAAT----TGACATA-GG-GAT-TCGA--A-TC--GTGTT--CGA-AT---TTA-GGTA-G-AAAAAA----T-TG--------TAAAC-CAT---T------TTACTT------TGGCAG-ACG---CATG-GCT-ACGAAG-T--AA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATATATAATTGG-TTGGA-CTGGACT-C-G-ACGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAATCCCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TGC-CGA----TACGA-C-GA-----TGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--AGAGGTCGCAC--ATGCAGACAATCAATCAA--N--A-ATT----C----TAATTTTACATTTTAA--CT-TTT-TCCTAATTTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG---AA--------ACAG-AG-TAGCAC-------GGCCCG-GGGA-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TATA-CACAAG--CCCTCACGCTT-CC--TCC-GGCNATTCACACC-TGC-AT-AAGATT-GGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
Reference ( family-4295 ) : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TTGTGAAC-TGCAAAGGATTTTCT----TCAC-TG-AGT---TAA-AC-C--GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ACGTTCTA-T-GTAGA-GC--G--CTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTNG-TTAA-TGG--AGTGACGN-A-A-GCNT--------TGTTT-C----ATC-CGATTTCAGA--A-GTATNA-AGAC-AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGA----GGCT--GC-TAAT-CC--------CG--------GTGTGTAC-ATCTT-GTCAATTTCGTGTCTC--G---AGCGA-GGT--GTG-----AAGAAACCTTTT-GATG-C-------TTTATA-----ATNCCGCGT-AG-TA-CACC-G-CAGCAAG-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAA-TTANGACTTT--G--AAATA---CATNTA-TTGTT----TCGCAAA-TGA-GATTA-ATA----AA--T--T-ATG-ATGGGTTGTG-AT-AAATAAAT---TTGATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T--TCTT-G-AA-TG-A-TGAAAACTATATNT-TGGTTTTGGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAAT--G-A---ATAATT-ACATCA-GCTT-ATGAATCCATAAT-AGGTTGTTG-GATTA-GG------AA-----TACG----CA-ATTTCAA--A--GACATCGAA-TT-TAG-AA-GAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTA--CACA--ATCTAA-TTGCTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TNA----GGT----A-CG-ATAA--------------NTAAT-TT--GAAT----TGACATN-GA-GAC-CCGA--A-TC--GTGTT--CGA-AT---TTA-GGTA-G-AGAAAA----T-TG--------TAAAC-CAT---T------TTACTT------TGGCAG-GCG---NATG-GCT-ACGAAN-T--AA-G-------GC-TATCGGA----AGAGA--AAACTANC-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATATATAATTGG-TTGGA-CTGGACT-C---ACGG--CTGGACTCTAGATGAGGAAGAAATTGCATCTGA-TAATCCCCGAAC-C--ANCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-CGC-CGA----TACAA-C-GG-----TGTCCA-GACTGC-TGTGC--AA-ACCGTGCGTTA-TGGACGT--GGAG-TCGCAC--ATGCAGACAATCAATCAA--N--A-ATT----C----TAATTTTACATTTTAA--CT-TTTATCCTAATTTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG---AA--------ATAG-AG-TAACAC-------GGCCCG-GGNA-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TATA-CACAAA--CCCTCACGCTT-CC--TCC-GGCAATTCACACC-TGC-AT-AAGATT-GGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
gi|1 : AGCG--TTCGTACT-GC--AATGGGCTGGCAAA-AATAT--TT-TTA-TTGTGACCGTGCAAAGGATTTCTTACGTTCAC-TG-AGCCTCTAATAC-CCCGTA-AAAAAC-----CG--CGCATCAAAAAATCGATGCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CGACGAT-----GTAGCC-TATTTCA-CCTGTGATCTCAAA---------A-TCGCCGACAATCG-AGCCACAAAAATTAGCAAACG-ACCGAAAA--CGAGGC-A--TCTTT--C-TG--GACG-TCA-TG-A-ATGTTCTA-T-GTAGAAGA--G----AC-----------TAAGTCGGGACACGATAG---ACATGTTGTCCTGCTGTTGTTAAAACGAGTCGGTTAAATGGCGAGTGATGG-AGA-GCGGCGGGGGGGTGGTT-C----ATC-CGATTTCAGA--ATGTATTA-TGAC-AAATTCTC-TAAT-ATCCGAATGGAGGGGGGGGGGGGTCAACAACCGC--AATCTTTGT--ATGTCTGAGGGGGGCTGAGC-TAAT-CCGGGGGGGGCGCCCAGGCTGGGGGTACTATCTTGGTCAATTCCGTGAACC--GAGCAGCAA-GGTTAGTGA----AAGAAACTCTTT-AA-G-C-------TTTATA-----ATGCCGCGT-AGCTACCACC-G-CAGCATG-ATA-A-C-GCA-ACTAATGGTGA-A-TAG-AAAAATTTATGACTTT--G--AAATA---CATATATTTGTTTTTCTTGCAAATTGAGGATTA-ATA----AA--TCCT-ATGAATGGGTTGTT-CTGAAATAAATAA-TTGA-TTT--TTCATAACGAACAGAGGAAAGTAGCCGACCTAATT--TCTT-G-AATTGCA-TGAAACCTATATCTATGGTTTGGGCGGACGTACATTT-ATTGCT-TGCGAAATTAAGACC-GTGGAAAAAATAAT--GAA---ATAATTAACATCA-GCTTAATGAATCTATAAT-AGGTT-TT--GATTA-GG------CA------AC-----CA-ATTTCAA--A--GACATTGAAGTTGTAGTAA-CAGACGAAGAGTTA-CTGAC-AGT-----ATTGATTAGAAAACATA-GTAGTCAGGCTTCGGTAACCAC---ATCCTC-TTGTGCAGCGGGCTCGCTATATACAAA------ACA-A--ATGCACGGCATCAACTAAA--TCCC--AT-----GAATTG------------------TGTTTTGATTAGG-ATTTA----GGCCTTAA-CG-ATAAGGTGGGGGTGGGGGTTAAT-TTTGGAAT----TGACATA-GGCGAT-CCGA--ATTC--ATGTT--CAA-AT---TTA-GGTA-G-AAAAAAGGG-TGTG--------GAGACGCAT---T------TTACTTGGGGGGGGGCAG-ACG---GATG-GTTGACGAA-----AA-A-------GC-TATCGGA----AGAGA--AATCTGAC-CCGCCATTAAG-AGCCCCTTTGCGC-TTATG---AATGGA-TTGGA-CTCGACTCC---ACGG--C----------GTGAGGAAGAAATTGCATCTGA-TAATCCTTGAACACCAACCCTCGTCGTTCAGGAC---CAGTTG-ATAGGAAGGAA-TGC-CGACTATTACAA-CAGA-----TGTCCAGGACTGCATGTGCCAAA-GCCGTGCGTTATTGGACGT--AGAG-TCGCACTTATGCAGACAATCAATCAAACA--A-ATT----C----TAATTTTACATTTTAA--CT----------GTTTTT-AC----CTAAGTTAAAATAG-TTTACTTCGAAACATGGTTTTGACT---TAT---GACAA-CGTCG-----------------------ACAC-------GGCCTGAGGCATTTAGAGTCCATG--TATCAG---------C--GA-AC----G-GGTATATA-CACAAAC-CCCTCACG
gi|10 : taacC-TA-TTGC--AATG------CAAA-AATAT--TT-T-A-TTGTGA-C-TGCAAAGGATTTCCT----TCAC-TG-AGT---TAA-AC----GTA-AAAAA------C---CGCATCAAA---TCG--GCGCAGAAATA-A-C-AAG-TTT-ATT-G-A---T-CC-----AG-TAAT-----GTGGCTAT-TTTTA-CCTGT--TTTCAAA---------------T--CAATC-GAGC----AATAATAG-AAATG-ACCGGAAA--CGAGGC-ATTTTTTT--C-TG-TGACG-TCA-TGGATATG-TCTA-T-GTAGA-GC--GA-CTACTTATGGGTACTTA---TGGGAGAC-ATAG---ACA-GTT-TCT-GCT-TT-at
gi|11 : G-TAGCAC-------GAT-----GAA-T---ACCCCGTA-T-ATT-G---------A--GG-AATTAAG-G---TACA-CACCGG--CTAGCAGGGGC-CC--TTCAGGC--CTCACATC-TACCAC-AA-ATT-AGCTCCG-CTCC-TATTT-AACTTACCTTAGGAAAACCGA-CAGGTTGAGAA
gi|12 : ttacagaaacatagaggtaatgcagATCCTGTG-CATTCAG---------A--AA-AT----A-----TATT-CACAAG--CTAT-A---TT-CC--TTC-GGCGCATCACACC-TAC-TT-AGAATT-AGCCCCG-CCCCTCATTTTA-CTTACCTGGGGAAAACCGA-T-catagattttgaaagtgaaatcatagtttt
gi|13 : gtatgaaaacgaagaggtacagcaggttacaaaggtaccTC-TA-T-GC--AGTGG------AAT-AACAT--TT-T-A-TTGTGA-T-TGCAAAGGATTTTCC----TCAC-TG-AGT---TAA-AT----GTA-AAAAA------C---TGCATCAAAA--TCG--GCGCAGAAATA-A-CAAGA-GTT-ATT-G-A---T-CC-----GG-TAAT-----GTGGCT-A-TTTTA-CCTGT--TTTCAAA---------t
gi|14 : ggCCCCTT-CGC-TTATATATAAT-GG-TTGGAACTGGACT-CTGGATGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAAT-CCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATA
gi|15 : AATCG-AGC---AAAA-ATAG-AAACG-ATTGAAAA--CAAGGC-AG-GTCTT--C-TG-TGACG-TCA-TACA-ACG-TCTC-T-GTATT-GC--GT-CTAA-----------TA---TGGGAGAC-ATGG---ACA-TTT-TCT-GCT-TT-TTAAA
gi|16 : ACAACCGC--AATCTTTTT--ATGTCTGA----GGCT--ACCTAAT-CC------------------GTGTGTAT-ATCTT-GTCAATTTCGTCTCTC--G---AGCGA-GGT--GTG-----AAGAAACCTTTT-c
gi|17 : CT-TT-TTAAA-CAA-TAG-TTAA-TGGGGAGTGACGCCA-A-GCCT--------TGTTT-TCAAAATC-CGATT-CAGA--A-GTATTATTGGCGAA---TTC-TGAG-AAC-GAATt
gi|18 : CT-TT-TTAAA-CAA-TAG-TTAA-TGGGGAGTGACGGCA-A-GCCT--------TGTTT-TCAA-ATCGCGATTTCAGA--A-GTATTA-
gi|19 : T----TCAC-TG-AGT---TAA-AC----GTA-AAAAAA----------GCATCAAAA--TTG--GCGCAGAAATA-A-C---A-GTT-ATT-G-A---T-CC-----CA-TAAT-----GTGGCTAT-TTTTttggcgcaaattctga
gi|2 : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TTGTGAAC-TGCA--GGATTTTCT----TCAC-TGGAGT---TAA-AC-C--GTA-AAAAAA-----CAACCGCATCAAAAA-TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---TGCC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCAAAGC---AAAAAATAG-AA-CG-ACCGGAAA--CGAGGC-A--TTTTT--CATG-TGACGCTCAATGGA-ATGGTCTA-TCGTAGACGC--G--CTA------------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAACTGG--AGTGATGA-A-A-GCAT--------TGTTT-C----ATC-CG--TTCAGA--A-GTATAA-ATAC-AA---TTCCTAAT-ATC-GAATTA-----------GGTCAACATCCGC--AATCTTTTT--ATGTCTGA----GGCT--GC-TAATGTC--------CG--------GTGTGTA--ATCTTTGTCAATTTCGTGTCTC--G---AGCGA-GGT--GTG-----GAGAAATTTTTT-GATGGC-------TTTATA-----ATACCGCGTCAG-TA-CACC-A--AGCCATTATA-AAC-G-A-A--AATGGT-A-A-TAG-AAAAA-TTAGAACTTTTTG--AAATA---CATCTA-TTGTT------GCAAA-TGA-GATTA-ATA----AA--T--G-ATG-ATGGGTTGTG-A--AAATACAT---TTGATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T---CTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTAGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATTTG-ACATACAATT-ACATCAAGCTT-ATGAATTTATAAT-AGGTTGTTGTAATTA-GG------AAATAAGTACGAA--CAGATTTCAACCA--GACAT-GAA-TT-TAG-AAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTA--CACA--ATCTA--TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------T-TTTTGATTAGG-A-TAA----GGT----A-CG-ATAG--------------GTAAT-TT--GAAT----TGACATCCGA-GAT-TGGA--A-TC--GTGTT--CAA-AT---T-A-GGTA-G-A--AAA----T-TG--------TAAAC-CAT---T------TTACTT------TGGCATCATG---CATG-GCT-ACGAAGGT--AA-ATAGCAACGC-TATCGGA----AGAGA--AAATTATT-CAGCCA-TAAG-AGCCCCTT--CGC-TTATATATAATTGG-TTGGA-CTGGACT-TGG-ATGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGAATAATCCCCGAAC-C--AACCCCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAAATGC-CGA----TAC------------TGTCCA-GACTG----TGC--AATACCGTGCGTTA-TGGATGTCCGAAGGTCGCAC--ATGC-GACAATCAATCAA--C--A-ATT----C----TAATTTTGCATTTTAA--CT-TTTATCCTAATTTT--ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG---AA--------ACAG-AG-TTGTAC-------GGCTGG-GGGA-TTAG-TCCCATG-T--TTAT---------A--GG-AC----G-G---TATA-CACAAA--CCCTCACGCTT-CC--TCC-AGCTATTCACACC-TGC-ATGAAGATT-GCTTCCG--TCC-CACCTAAACT--CCTGAGGTAAG-CGG-T-GGGCGAAAACCTCGGCTA
gi|20 : AGGGATTTC-GA-T-GCCAAATGG----------AATATCGTT-T-AATTGTGA-T-TGCAAAGG-TTTTC-----TCAC-TG-A
gi|21 : taa--CGA-CTA--T--TCTT-G-AA-TG-A-TG-AAACTATATCT-TGGTTTT-AC--ACT-ACATTT-ATTG-T-TGCGAAATctattaagt
gi|23 : agTC-TA-T-GC--AATGG------AAT-AACAA--TT-T-A-TTGTGA-T-TGCAAAGCATTTTCC----TCAC-TG-AGT---T
gi|24 : gAGGG--T-C-TA-T-GC--AATG------CAAA-AATAT--TA-T-A-TTGTG-AC-TGCAAAGGATTtga
gi|25 : C-GAATTA-----------GGTCAACAACCGC--AATCTTATT--AGGTGTGA----GGCT--
gi|26 : TC-TA-T-GC--AATG------CAAA-AATAT--TT-T-A-TTGTG-AC-TGCAAA
gi|3 : ggTC-TA---GC--AATG------CAAA-AATAT--TTAT-A-TT-TGTAT-GGCAAAGGATTT-CT----ACACGTG-AGT---TGA-AA-C--GTA-AAAAA------C---CACATCAAAA--TCG--GGCCGAAAATA-AGC-AGAAGTTCATG-GCAGT-T-CC-----CG-TAAT-----G-GCCA-T-TTTTA-CCCAT--TT-CAAAGAGTGCCCAA-TC--C---AATCGGAGC---GCAAAATAG-AAACG-ACCCGAAA--------------TTT--C-TGGCGACG-TCA-TGGA-ATGTTC-G-T-GTAGA-GC--GGCCTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGTT-TT-T--AAACACGTCGTTTAA-TGG--AGTGATGC-ACA-G-TC--------TGTTT-C----AT--CGATTTCAGA--A--TATAT-AGAC-AA---TTC-TAAT-ATC-GAATTA-----------GGTCAAC
gi|3 : ggTTTTT--ATGTCTGA----GGCTT-GC--AAT-CC------------------GTGTGT----TCGT-GTCAACCTCGTGTTTC--G----TTGC-AGT--GTG-----AAGAAACTTTTTTGATG-C-------TTTATA-----ATACCGCGT-AA-TA-CACCAG-CAG--AG-ATATA-C-G-A-A--GATGCT-A-A-TAGCAAAAA-TCATGAATTT--GACAAATA---CATCTA-TTGTTG---TCGCAAA-TGATGATTCTATA----AATCT--T-ATG-ATCGGTTTCGAAT-AA--AAAT---TTGA-TGT--TTTAT-ACGAA-AGA-GAAAGTA--GCA-CTA--T--TCCT-GTAA-TG-A-TGAAAACTATATA--TGGCTTT-GC--ACTGACATTTAAGTG-TATGTATAAGA-AGA-CAGTG--AAAAA-AAT----A---ATA----------------ATGAATCCATAATCAGGTTGTTG-GATTACGGACACTAAG-----TACGACAATA-ATGTCAA--ACGGACATCGAA-TT-TAG--A-GAGA--AA----TACCTGACGAGT-----ATTGA-TAGAAAA---ACGTA-T---GCTTC-GTA---ACAACATCTAA-TTG--C----GGCTCGCTATAGAC-AA------CAA-ACTATGAAC-GTATCAACTAAAACT-CCTAATTAAAGAA--TGAGCAGCACCAGCCCGGCCTGTTTTA--TAGG-A-TAATCATGTT----ACCG-AT-A--------------TTAATGTT--GAATA---TGAC-TA-GT-TAC-TCGAACA-TCCTGTGTTACCTA-A----TGA-GGTACG-AAAAAA----T-CGATAACCGCTAAA--CAT---TTGATTCTTACTT------TAGATG-GTGCAACATGAGCC-ACGAAG-T--ccccccctccccccacccccccccccccccccccctccaccttttttatgtctgaggcttgcaatccgtgtgttcgtgtcaacctcgtgtttcgttgcagtgtgaagaaacttttttgatgctttataataccgcgtaatacaccagcagagatatacgaagatgctaatagcaaaaatcatgaatttgacaaatacatctattgttgtcgcaaatgatgattctataaatcttatgatcggtttcgaataaaaatttgatgttttatacgaaagagaaagtagcactattcctgtaatgatgaaaactatatatggctttgcactgacatttaagtgtatgtataagaagacagtgaaaaaaataataatgaatccataatcaggttgttggattacggacactaagtacgacaataatgtcaaacggacatcgaatttagagagaaatacctgacgagtattgatagaaaaacgtatgcttcgtaacaacatctaattgcggctcgctatagacaacaaactatgaacgtatcaactaaaactcctaattaaagaatgagcagcaccagcccggcctgttttataggataatcatgttaccgatattaatgttgaatatgactagttactcgaacatcctgtgttacctaatgaggtacgaaaaaatcgataaccgctaaacatttgattcttactttagatggtgcaacatgagccacgaagtta
gi|4 : ggtctagcaatgcaaaaatatttatatttgtatggcaaaggatttctacacgtgagttgaaacgtaaaaaaccacatcaaaatcgggccgaaaataagcagaagttcatggcagttcccgtaatggccatttttacccatttcaaagagtgcccaatccaatcggagcgcaaaatagaaacgacccgaaatttctggcgacgtcatggaatgttcgtgtagagcggcctactatgggagacatagacagtttctggtttttaaacacgtcgtttaatggagtgatgcacagtctgtttcatcgatttcagaatatatagacaattctaatatcgaattaggtcaacccccccctccccccacccccccccccccccccccctccacctT--G--AAATA---CATACA-TTGTT------GCAA--TGAAGATTA-ATA----AA--T--T-ATG-A--GGTTGTG-AT-AAATAA-T---TTGATTTT--TTTATA-CGAA-AGA-GAAAG----CGA-CTA--T--TCTT-G-AA-TG-A-TGAAA-CTATATTA-TGGTTTTG-C--ACTA-CATTT-ATTG-T-TGCGAAATA-AGA-C-GTG--AAAAATAATT-G-AC--ATAATT-ACATCA-GCTT-ATGAATT-ATAAT-AGGTTGTTGTGATTA-GG------AA-----TA---------ATTCCAAC-A--GACATTGAA-TT-TAG-AAAGAGA--AAG---TA-CTGAC-AGTATTCTAGTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAA-CACA---TCTAAATTG-TC----GGCTCGCTA-ATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TTA----GGT----A-CG-ATAG--------------GTAAT-TT--GAAT----TGACATA-GG-GAT-C-AA--A-TC--GTGTT--CAA-AT---TTA-GGTA-G-A-AAAA----G-TG--------TAA---CAT---T------TTACTT------TG-CAA-------CATG-GCT-ACGAAA---------------GC-TATCGGA----AGAGA--AA-TTA-C-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATA----AT-GG-ATGGA-CTG-----C---A------TGGACTCTAGATGAGGAAGAAATTGCATCTGA-TAATCCT-GAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAATCGC-T-A----TACAATC-AGATGAATGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--CGAGGTCGCAC--ATGCAGACAATCAATCAA--ATAA-ATT----C----TAATTTTACATTTTAA--CTGTTTA-CCTAATT-----------------AAAAT-GTTTTACTTC--AACAT--TTTTGACT---TAT---GACA--CGTCG---A--------------------CAC-------GGCCTG-GGGA-TTAGATCCCATG-TTATCAG-------------G-AC----G-G---TATA-CACAAAAACCCTCACGCTTCCC--TCC-AGCTATTCACACC-AGC-AC-AA-ATT-GGCTCCG-CCCC-CACCTAAACTTAta
gi|5 : gG--CTC-TA-T-GC--AATGT-----CAAATAATAT--T----A-TTGTGA-C-TGCAAAGGAATT-CT----TCAC-TG-A-T---TAA-ACAC--GTAGAAAAAA-----G---CCCATCAAAG--TCGA-GCGCAGAAATACA-C-ATA-GAT-AATAG-AGTGT-CCAAACGTG-TAATCAGTGGTGGTT-T-TTTTAGCTTGT--TTCCAAA---------AATC-------ATCG-AGC---AAAAA-TAG-AAACGCACCAGAAAAACGAGGC-A--TTTTTTTC-TG-TGACG--CA-TGGA-ATGTTCTAAT-GTAGG-GCCGG--CTAC-----------TA---TGG-AGAC-ATAAGACACA-GTT-TCTGCTT-TT-TTAAAATAGTTCG-TTAA-TGG--AGTGA-GA-A-ACGCTA--------TGTTTTC----ATCACGATTTAAAGCTA-GCATCA-AGAG-CA---TTC-TAATTAT--GAATTA-----------GGTCAACAACCGCTCAATCTTTTTTAATGT-TGA----GGCTA-GC-TAAT-CT--------CG---------TGTGTAT-AT-TC-GTCAATTTCTTGTCTCTTG---AGCGACAGT--GTGTCCGAAAGAAACCTTTT-GTTG-CATCGCTATTAATACACTCATCCCGTGC-GA-GA-TAAC-GACAGCAAT-AGA-A-TAG-ATA--AATGGT-ATACTAG-AAAAT-TAATGACTT---G--AAACATGACATTAA-TTATT-------------GA-TATTA-ATATATGAA--T--TTATG-A--GGTTGTG-AT-AACGAGATCATTTAATTTTCTTTTATA-CGAA-AGATGAAAGTAGACGA-CTA--TATTCTTTG-AA-TG-AATGAAA-CTATATAT-GGGTTTTGGC--ACTATCATTTCATTG-T-T----AATAGATAGT-ATA--AAAAAAAAT--A-A---ac
gi|6 : gtAAA---A-ATA-T--GACGTT-GTAG-CATA---TCT---TTTCTC----GGCTCACC-TA-ACAAATCTTTACAACA--ATACAC-GCGTGAATTAAA--T-CC--AT-----TA--TG------------------TGTTTTGATTAGATA-TAT----AGT------CGCATAA--------------TTAAT-----GAATCTAATCACAGG-GA-GGCATCGA--A-TC--GTGTT--TGATATGTATTACGGTA-GGAGAAAAAATAT-TG--------TAAGC-CATAATT------TTACTT--------GCAG-------AATG-GCT-ACGGAT-TGTAACG-------GCGCAACGCATTCGAGAGACTGAACCATCACCGCAA-TAAGCAGCACTTTT-CGCGCT---TATAATTGAATGGGA-CTGGACT-C----------TAGATCCT-GATGATCA------TG-ATCT-----ATCTC--ACC-C--TACCTCGTCG-TCAGGACAGAC-G-TGAATAGGAGTGAA-TGCGCGA----CGTGA----A-----TTTCCA-GACTGT-TGTGC---A-ACCGTG
gi|6 : AATCAA--T--ATATT----CCTGATAAAATTATATAAAAA--AT-TTT-TGCTAATTTTTTACAATTATACATT----TA-TTTTACCTT--AACAC--TTTTGAC-------------AA-CGTCGTAGAA--------ATAG-AGGTAGCAC-------GATCCG-GGAA-ATAAATCCCGTC-TTATCA----------A--GA-A-----A-G---TATG-C----------------------------GCAATTCACACC-TGC-AT-AAGATT-GGCTCCG-CCCT-TACTTAAACTTACCTAAGGTAAACCAGTT-TGTCAAAAAGCTCGGCtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatataatcaatatattcctgataaaattatataaaaaatttttgctaattttttacaattatacatttattttaccttaacacttttgacaacgtcgtagaaatagaggtagcacgatccgggaaataaatcccgtcttatcaagaaagtatgcgcaattcacacctgcataagattggctccgcccttacttaaacttacctaaggtaaaccagtttgtcaaaaagctcggccttt
gi|7 : aaaaatatgacgttgtagcatatcttttctcggctcacctaacaaatctttacaacaatacacgcgtgaattaaatccattatgtgttttgattagatatatagtcgcataattaatgaatctaatcacagggaggcatcgaatcgtgtttgatatgtattacggtaggagaaaaaatattgtaagccataattttacttgcagaatggctacggattgtaacggcgcaacgcattcgagagactgaaccatcaccgcaataagcagcacttttcgcgcttataattgaatgggactggactctagatcctgatgatcatgatctatctcaccctacctcgtcgtcaggacagacgtgaataggagtgaatgcgcgacgtgaatttccagactgttgtgcaaccgtgtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatatTC-TA-T-GC--AATAG-----AAAG-AATAT--TT-C-A-TTGTGA-T-TGCAAAAGATTTTCT----TCAC-TA-AGT---TCA-AT----GTA-AAAAAAACCCAC---CGCATAACAA--TCG--GAGCAGAAACT-G-C-AGA-GTT-ATC-G-A---G-CC-----CG-CAAT-----GTGGCT-A-TTTTA-CCTGT--TCTCAAA---------A-T---C--CAATC-GAGC-----AAAATAG-AAACT-TCCGAAAA--TGAGGCTG--GTCTG--A-TG-TGACG-TCA-CAGT-ATA-TCTC-T-GTAGA-ACG-G--CTAG-----------TA---TGGGAGAC-AGAG---ACA-GTT-TC-GGCT-TT-TT-GAAC-AGTAG-TTAA-TGG--AGTGACAC-A-A-GCTT--------TGTTT-C----ATC-CGA-TTCGGA--A-GTATT--CGGC-AA---TTC-TAAT-ACC-GAATTA-----------GGcttt
gi|8 : gTTT-TGGAT-T--AGAA-TAGTAC--A-ATAGATAATTA-TGAA-------ATTTTGAC----TACTTTTACAGCAAAA--CA-CTC-TCCT--TTTTT-TTAAT-ATATATT----T-GTTTTACTTC--AA-AT--ATTTGACTACATAT----ACAATCGTTG---AAGATATAAAATAGCAG-TAACACAGTAACAGGCCCA-GGGA-TTAGATTCCGTGATTATCAGCGTGTTATCA--GG-AC----G-G---TATAACACAA---CTCTC-CACTG-CCCTTCC-AGCAATTCACACCCTGC-AT-TATATTTAGCTCCA-CCCC-CATATAAACTTACCTGAGGTAAACCGG-G-GGTCGAAAAATCCGGg
gi|9 : -TGTGC--AG-ACTGTGCGTTA-TGGATG-----AG-TTGCAC--A----GACAATGAATCAT--TTTA-TTT----T----T--TTTTACAT---AAATCT-TTCTTCCTAATTTTT-ATAATTATATATTTA--TA-TTTTACTTT--AACAT--TTTTGACT---TATAATGACAA-CGTTG---AGT-------ACAG--G-TAACAC-------AGCTCG-GGTA---AGATCCCGTG-TTATCAG---------AAAGGTAC----ATG---TATA-CACAAG--CTCTCAC-CCT-CC--CCC-GGCAATTCACACC-TGC-GT-AAGATT-GGCTCCGCCCCC-CACCTAAACTTACCTGAGGTAAACTGG-TGGGTCG-AAACCTCGGCTAtctttaaacaatagaattaccct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AATATGCTGAAGGGAGGGGGGGGGGGACAAACAACCAAAAATCAATATCTGTATGTATGA
Alignments
lowQualScore : 11 2222222 22222 2222222222 11 11 111 11111 11111 111 4444444444444444444 22 1111 11111 1 1 33333333333333333333 111 111 1 111 1111 2222222222 222222 1 11111111111 111 33333333333 11 1111 1111 666666666666666666 111 11 11111 11 22222 1 111 1 222222 222 11 1 1111 11111 222222222222 11111 1 11 111111 111 4444444 11 2 1111 1111111 11 1111 33 1 11 11 1 11 1 111 11 1 1 111 11 111 222222 1 1 1 1 7777777777777777777777777777 11 1 1 1 11 2222 1 1 33333 1 111 11 11 222 2222222 222222 11 11 11 66666666666666666666666666666 1111 222222 444444444444444 11 1 1111 11 11 11 2222222222222 44444444444444444444444444444 222222 6666666666666666666666 6666666666666666 1 2222 11 111 1 1 111 1 55555555555 1 11 111 1 1 6666666666666666666 1 11 11111 1 2222222 11 33333 1111 111 1111111 1111111 2222222 111 1111 6666666666666666666666 1111111 111 333333333333333333333333333 111 11 1 111
lowQualScore : 11 3 3 3 55 5555555 3 55 3 3 3 3 5555 5 8888 4 4 777 5 44444 88 5555555555 11 11 5 5 5 5 5 5 5 555 5 22222 5 22222 222 5 77 0 8888888888888888888 00 7777 1 5 5 77 77777 77 5 55 5 5 0 5 5 5 5 1 66666666666666666666 000 5 000 5 5 88 4 4 0 5 0 7 0 1 5 7 444 4 4444 5 2222222222 222222 1 1 77 5 88888888888 000 5 6 5 11111111111 11 99 2 4444 7777 88 8 888888888888888888 444 8 8 11 0 77777 11 00000 8 8 3 0 777 0 888888 777 33 0 6666 44444 000000000000 22222 0 11 222222 444 1 8 5555555 33 4 8 7777 6666666 8 55 2222 66 0 66 8 0 11 11 8 6 0 88 6 99999 6 6 6 6 6 1 111 00 99 99 3 6 6 3 777 11 6 444 8 111111 0 0 6 0 2 3 3 0 0000000000000000000000000000 22 0 0 0 9 33 0000 0 0 66666 0 444 8 8 11 8 3 0 88 444 1111111 11 5 0 333333 8 11 8 11 8 11 11111111111111111111111111111 0 8 8 1 7777 555555 8 0 777777777777777 88 11 6 8 0 8 8 7777 11 8 11 11 4 5555555555555 0 8 88888888888888888888888888888 333333 6666666666666666666666 8 8 0000000000000000 0 1111 33 9 333 0 0 88 8 0 111 5 8 8 55555555555 0 5 6 1 8 3 8 11 8 444 0 8 8 0 0 5555555555555555555 0 55 33333 0 7777777 33 3 9 44444 8 4444 333 99 3333333 3 3333333 1 5555555 99 99 111 4444 6 0000000000000000000000 8888888 33 5 888 000 222222222222222222222222222 5 777 1 7777 33 66 22 5 5 5 0 5 5 5 0 1 777 0 1
lowQualScore : .. . . . .. ....... . .. . . . . .... . .... . . ... . ..... .. .......... .. .. . . . . . . . ... . ..... . ..... ... . .. . ................... .. .... . . . .. ..... .. . .. . . . . . . . . .................... ... . ... . . .. . . . . . . . . . . ... . .... . .......... ...... . . .. . ........... ... . . . ........... .. .. . .... .... .. . .................. ... . . .. . ..... .. ..... . . . . ... . ...... ... .. . .... ..... ............ ..... . .. ...... ... . . ....... .. . . .... ....... . .. .... .. . .. . . .. .. . . . .. . ..... . . . . . . ... .. .. .. . . . . ... .. . ... . ...... . . . . . . . . ............................ .. . . . . .. .... . . ..... . ... . . .. . . . .. ... ....... .. . . ...... . .. . .. . .. ............................. . . . . .... ...... . . ............... .. .. . . . . . .... .. . .. .. . ............. . . ............................. ...... ...................... . . ................ . .... .. . ... . . .. . . ... . . . ........... . . . . . . . .. . ... . . . . . ................... . .. ..... . ....... .. . . ..... . .... ... .. ....... . ....... . ....... .. .. ... .... . ...................... ....... .. . ... ... ........................... . ... . .... .. .. .. . . . . . . . . . ... . .
lowQualScore : 00 6 6 6 00 5555555 6 00 6 6 6 6 9999 2 5555 0 0 888 0 00000 22 8888888888 99 99 0 0 0 0 0 0 0 666 0 55555 0 55555 555 7 99 1 0000000000000000000 33 1111 7 7 7 99 11111 99 7 99 7 7 7 7 4 7 7 4 99999999999999999999 000 7 000 7 7 00 4 4 1 0 1 9 7 4 7 9 333 0 9999 7 0000000000 444444 4 4 99 7 99999999999 000 7 7 7 77777777777 00 22 5 2222 5555 88 0 000000000000000000 444 0 0 00 8 88888 00 00000 0 0 2 0 555 0 888888 555 22 0 5555 00000 888888888888 00000 0 22 888888 000 0 0 4444444 66 0 0 0000 8888888 0 66 6666 22 8 44 0 6 00 44 0 0 8 33 7 33333 7 7 7 7 7 3 222 33 22 55 3 7 7 2 222 00 0 111 8 000000 0 0 5 0 5 2 2 0 5555555555555555555555555555 55 5 0 0 8 88 0000 0 0 88888 0 000 0 0 00 0 8 8 66 444 2222222 66 6 8 000000 0 00 0 00 0 00 22222222222222222222222222222 8 0 0 4 0000 888888 0 8 666666666666666 88 00 0 0 8 0 0 8888 00 0 00 00 6 4444444444444 8 0 00000000000000000000000000000 000000 0000000000000000000000 0 0 8888888888888888 0 2222 88 8 888 0 0 88 0 8 888 4 0 0 00000000000 8 6 4 4 0 2 0 00 0 000 8 0 0 0 0 5555555555555555555 0 88 88888 0 5555555 88 2 2 00000 0 2222 333 22 2222222 2 8888888 8 8888888 22 22 777 2222 7 6666666666666666666666 6666666 44 7 999 555 111111111111111111111111111 0 222 1 8888 66 11 44 7 7 7 1 7 7 7 4 7 555 8 0
consensus : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTTCT----TCAC-TG-AGT---TAA-AC-C--GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GC--G--CTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGG-G-AGTGACGN-A-A-GCNT--------TGTTT-C----ATC-CGATTTCAGA--A-GTAT-TA-NGGC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT-CC--------CG--------GTGTGTA-TATCTT-G-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----AA-GAAACTTTT-TGATG-CTT---TAT-AATAC------CGCGT---AG-TAC-ACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAATT-ATGACTTT--G--AAATA---CATNTA-TTGTT----T-GCAAA-TGA-GATTA-ATA----AA--T--T-ATG-ATGGGTTGTG-AT-AAATAAAT-ATT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T--TCTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTGGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA-CA-AT----TCCAAC-AGACATCGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA-ATCTAA-TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TAA----GGT----A-CG-ATAA--------------TTAAT-TT--GAAT-TGA-CATA-GG-GAT---TCGA--A-TC--GTGTT--CGA-----ATT----TAGGTA-GAAAAA--A---T-TG--------TAAAC-C---ATT------TTACTT------TGGCAG-ACG------CATG-GCT-ACGAA--G-TAA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATATATAATTG-GTTGGA-CTGGACTC--G-ACGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAATCCCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TGC-CGA----TAC-----GAC-GA-TGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--NGAGGTCGCAC--ATGCAGACAATCAATCAA--NT-A-ATTC----TAATTTTACATTTTAA--CTTT-T-T-CCTAATTTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TAGCAC-------GGCCCGGGG-A-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TAT-ACACAAG--CCCTCACGCTTCC--TCC-GGCNATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
Reference ( family-4295 ) : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTTCT----TCAC-TG-AGT---TAA-AC-C--GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GC--G--CTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGG-G-AGTGACGN-A-A-GCNT--------TGTTT-C----ATC-CGATTTCAGA--A-GTAT-TA-NGAC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT-CC--------CG--------GTGTGTA-TATCTT-G-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----AA-GAAACTTTT-TGATG-CTT---TAT-AATAC------CGCGT---AG-TAC-ACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAATT-ATGACTTT--G--AAATA---CATNTA-TTGT-----TTGCAAA-TGA-GATTA-ATA----AA--T--T-ATG-ATGGGTTGTG-AT-AAATAAAT-ATT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T--TCTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTGGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA-CA-AT----TTCAAC-AGACATCGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA-ATCTAA-TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TAA----GGT----A-CG-ATAA--------------TTAAT-TT--GAAT-TGA-CATA-GG-GAT---TCGA--A-TC--GTGTT--CGA-----ATT----TAGGTA-GAAAAA--A---T-TG--------TAAAC-C---ATT------TTACTT------TGGCAG-ACG------CATG-GCT-ACGAA--G-TAA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATATATAATTG-GTTGGA-CTGGACTC--G-ACGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAATCCCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TGC-CGA----TAC-----GAC-GA-TGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--AGAGGTCGCAC--ATGCAGACAATCAATCAA--N--A-ATTC----TAATTTTACATTTTAA--CTTT-T-T-CCTAATTTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TAGCAC-------GGCCCGGGG-A-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TAT-ACACAAG--CCCTCACGCTTCC--TCC-GGCNATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
gi|1 : AGCG--TTCGTACT-GC--AATGGGCTGGCAAA-AATAT--TT-TTA-TT-GTGA-CCGTGCAAAGGATTTCTTACGTTCAC-TG-AGCCTCTAATAC-CCCGTA-AAAAAC-----CG--CGCATCAAAAAATCGATGCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CGACGAT-----GTAGCC-TATTTCA-CCTGTGATCTCAAA---------A-TCGCCGACAATCG-AGCCACAAAAATTAGCAAACG-ACCGAAAA--CGAGGC-A--TCTTT--C-TG--GACG-TCA-TG-A-ATGTTCTA-T-GTAGAAGA--G----AC-----------TAAGTCGGGACACGATAG---ACATGTTGTCCTGCTGTTGTTAAAACGAGTCGGTTAAATGGCG-AGTGATGG-AGA-GCGGCGGGGGGGTGGTT-C----ATC-CGATTTCAGA--ATGTAT-TA-TGAC---AAATTCTC-TAAT-ATCCGAATGGAGGGGGGGGGGGGTCAACAACCGC--AATCTTTGT--ATGTCTGAGGGGGGCT-GAGC-TAAT-CCGGGGGGGGCGCCCAGGCTGGGGGTACTATCTT-GGTCAATTCCGTGAACC--GAGCAGCAA-GGTTAGTG-----AAAGAAACTCTT-TAA-G-CTT---TAT-AATGC------CGCGT---AGCTACCACC-G-CAGCATG-ATA-A-C-GCA-ACTAATGGTGA-A-TAG-AAAAATTTATGACTTT--G--AAATA---CATATATTTGTTTTTCTTGCAAATTGAGGATTA-ATA----AA--TCCT-ATGAATGGGTTGTT-CTGAAATAAATAATT-GA-TTT--TTCATAACGAACAGAGGAAAGTAGCCGACCTAATT--TCTT-G-AATTGCA-TGAAACCTATATCTATGGTTTGGGCGGACGTACATTT-ATTGCT-TGCGAAATTAAGACC-GTGGAAAAAATAA-T-GAAATA--ATTAACATCA-GCTTAATGAATCTATAAT-AGGTT-T--TGATTA-GG------CA------AC---CA-AT----TTCAA--AGACATTGAAGTTGTAGTAACAGACGAAGAGTTA-CTGAC-AGT-----ATTGATTAGAAAACATA-GTAGTCAGGCTTCGGTAAC-CACATCCTC-TTGTGCAGCGGGCTCGCTATATACAAA------ACA-A--ATGCACGGCATCAACTAAA--TCCC--AT-----GAATTG------------------TGTTTTGATTAGG-ATTTA----GGCCTTAA-CG-ATAAGGTGGGGGTGGGGGTTAAT-TTTGGAAT-TGA-CATA-GGCGAT---CCGA--ATTC--ATGTT--CAA-----ATT----TAGGTA-GAAAAA--AGGGTGTG--------GAGACGC---ATT------TTACTTGGGGGGGGGCAG-ACG------GATG-GTTGACGAA-----AA-A-------GC-TATCGGA----AGAGA--AATCTGAC-CCGCCATTAAG-AGCCCCTTTGCGC-TTATG---AATGG-ATTGGA-CTCGACTC--C-ACGG--C----------GTGAGGAAGAAATTGCATCTGA-TAATCCTTGAACACCAACCCTCGTCGTTCAGGAC---CAGTTG-ATAGGAAGGAA-TGC-CGACTATTAC-----AACAGA-TGTCCAGGACTGCATGTGCCAAA-GCCGTGCGTTATTGGACGT--AGA-GTCGCACTTATGCAGACAATCAATCAAACA--A-ATTC----TAATTTTACATTTTAA--CT-----------GTTTTT-AC----CTAAGTTAAAATAG-TTTACTTCGAAACATGGTTTTGACT---TAT---GACAA-CGTCG--------A-------------CAC-------GGCCTGAGGCATTTAGAGTCCATG--TATCAG---------C--GA-AC----G-GGTATAT-ACACAAAC-CCCTCACG
gi|10 : taacC-TA-TTGC--AATG------CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTCCT----TCAC-TG-AGT---TAA-A--C--GT--AAAAAA-----C---CGCATC-AAA--TCG--GCGCAGAAATA-A-C-AAG-TTT-ATT-G-A---T-CC-----AG-TAAT-----GTGGCTAT-TTTTA-CCTGT--TTTCAAA---------------T--CAATC-GAGC----AATAATAG-AAATG-ACCGGAAA--CGAGGC-ATTTTTTT--C-TG-TGACG-TCA-TGGATATG-TCTA-T-GTAGA-GC--GA-CTACTTATGGGTACTTA---TGGGAGAC-ATAG---ACA-GTT-TCT-GCT-TT-at
gi|11 : CAG--G-TAGCAC-------GAT----GA-A-T---ACCCCGTA-T-ATT-G---------A--GG-AATTAAG-G---TAC-ACACCGG--CTAGCAGGGGCCC--TTCAGGCC--TCACA-TCTACCAC-AA-A-TTAGCTCCG-CTCC-TATTT-AACTTACCTTAGGAAAACCGA-CAGGTTGAGAA
gi|12 : ttacagaaacatagaggtaatgATCCTGTG-CATTCAG---------A--AA-AT----A-----TAT-TCACAAG--CTAT-A---TTCC--TTC-GGCGCATCACA-CCTAC-TT-AGAA-TTAGCCCCG-CCCCTCATTTTA-CTTACCTGGGGAAAACCGA-T-catagattttgaaagtgaaatcatagtttt
gi|13 : gtatgaaaacgaagaggtacagcaggttacaaaggtaccTC-TA-T-GC--AGTGG------AAT-AACAT--TT-T-A-TT-GTGA-T--TGCAAAGGATTTTCC----TCAC-TG-AGT---TAA-A--T--GT--AAAAAA-----C---TGCATCAAAA--TCG--GCGCAGAAATA-A-CAAGA-GTT-ATT-G-A---T-CC-----GG-TAAT-----GTGGCT-A-TTTTA-CCTGT--TTTCAAA---------t
gi|14 : ggCCCCTT-CGC-TTATATATAAT-G-GTTGGAACTGGACTCTGG-ATGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAAT-CCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATA
gi|15 : AATCG-AGC---AAAA-ATAG-AAACG-ATTGAAAA--CAAGGC-AG-GTCTT--C-TG-TGACG-TCA-TACA-ACG-TCTC-T-GTATT-GC--GT-CTAA-----------TA---TGGGAGAC-ATGG---ACA-TTT-TCT-GCT-TT-TTAAA
gi|16 : ACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-A--CCTAAT-CC------------------GTGTGTA-TATCTT-G-TCAATTTCGTCTCTC--GAGCG---A-GGT--GTG-----AA-GAAACCTTT-Tc
gi|17 : CT-TT-TTAAA-CAA-TAG-TTAA-TGG-GGAGTGACGCCA-A-GCCT--------TGTTT-TCAAAATC-CGATT-CAGA--A-GTAT-TATTGGCG--AA---TTC-TGAG-AAC-GAATt
gi|18 : CT-TT-TTAAA-CAA-TAG-TTAA-TGG-GGAGTGACGGCA-A-GCCT--------TGTTT-TCAA-ATCGCGATTTCAGA--A-GTAT-TATTGGCGCAAA---TTC-TGA
gi|19 : T----TCAC-TG-AGT---TAA-AC----GTA-AAAAAA----------GCATCAAAA--TTG--GCGCAGAAATA-A-C---A-GTT-ATT-G-A---T-CC-----CA-TAAT-----GTGGCTAT-TTTT
gi|2 : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGAAC--TGCA--GGATTTTCT----TCAC-TGGAGT---TAA-AC-C--GTA-AAAAAA-----CAACCGCATCAAAAA-TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---TGCC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCAAAGC---AAAAAATAG-AA-CG-ACCGGAAA--CGAGGC-A--TTTTT--CATG-TGACGCTCAATGGA-ATGGTCTA-TCGTAGACGC--G--CTA------------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-CTG-G-AGTGATGA-A-A-GCAT--------TGTTT-C----ATC-CG--TTCAGA--A-GTAT-AA-ATAC---AA---TTCCTAAT-ATC-GAATTA-----------GGTCAACATCCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAATGTC--------CG--------GTGTGTA--ATCTTTG-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----GA-GAAATTTTT-TGATGGCTT---TAT-AATAC------CGCGTC--AG-TAC-ACC-A--AGCCATTATA-AAC-G-A-A--AATGGT-A-A-TAG-AAAAATT-AGAACTTTTTG--AAATA---CATCTA-TTGT-----T-GCAAA-TGA-GATTA-ATA----AA--T--G-ATG-ATGGGTTGTG-A--AAATACAT--TT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T---CTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTAGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATTTGACATACAATT-ACATCAAGCTT-ATGAATTTATAAT-AGGTTGTTGTAATTA-GG------AAATAAGTACGAACAGAT----TTCAACCAGACAT-GAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTA-CACA-ATCTA--TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------T-TTTTGATTAGG-A-TAA----GGT----A-CG-ATAG--------------GTAAT-TT--GAAT-TGA-CATCCGA-GAT---TGGA--A-TC--GTGTT--CAA-----ATT-----AGGTA-GAAAA-------T-TG--------TAAAC-C---ATT------TTACTT------TGGCATCATG------CATG-GCT-ACGAA--GGTAA-ATAGCAACGC-TATCGGA----AGAGA--AAATTATT-CAGCCA-TAAG-AGCCCCTT--CGC-TTATATATAATTG-GTTGGA-CTGGACTT--GGATGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGAATAATCCCCGAAC-C--AACCCCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAAATGC-CGA----TAC------------TGTCCA-GACTG----TGC--AATACCGTGCGTTA-TGGATGTCCGAAGGTCGCAC--ATGC-GACAATCAATCAA--C--A-ATTC----TAATTTTGCATTTTAA--CTTT-TAT-CCTAA-TTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TTGTAC-------GGCTGGGGG-A-TTAG-TCCCATG-T--TTAT---------A--GG-AC----G-G---TAT-ACACAAA--CCCTCACGCTTCC--TCC-AGCTATTCACA-CCTGC-ATGAAGA-TTGCTTCCG--TCC-CACCTAAACT--CCTGAGGTAAG-CGG-T-GGGCGAAAACCTCGGCTA
gi|20 : AGGGATTTC-GA-T-GCCAAATGG----------AATATCGTT-T-AATT-GTGA-T--TGCAAAGG-TTTTC-----TCAC-TG-A
gi|21 : taa--CGA-CTA--T--TCTT-G-AA-TG-A-TG-AAACTATATCT-TGGTTTT-AC--ACT-ACATTT-ATTG-T-TGCGAAATctattaagt
gi|23 : agTC-TA-T-GC--AATGG------AAT-AACAA--TT-T-A-TT-GTGA-T--TGCAAAGCATTTTCC----TCAC-TG-AGT---T
gi|24 : gAGGG--T-C-TA-T-GC--AATG------CAAA-AATAT--TA-T-A-TT-GTGA-C--TGCAAAGGATTtga
gi|25 : C-GAATTA-----------GGTCAACAACCGC--AATCTTATT--AGGTGTGAGG----CT-
gi|26 : TC-TA-T-GC--AATG------CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAA
gi|3 : ggTC-TA---GC--AATG------CAAA-AATAT--TTAT-A-TTTGT-A-T--GGCAAAGGATTT-CT----ACACGTG-AGT---TGA-AA-C--GTA-AAAAA------C---CACATCAAAA--TCG--GGCCGAAAATA-AGC-AGAAGTTCATG-GCAGT-T-CC-----CG-TAAT-----G-GCCA-T-TTTTA-CCCAT--TT-CAAAGAGTGCCCAA-TC--C---AATCGGAGC---GCAAAATAG-AAACG-ACCCGAAA--------------TTT--C-TGGCGACG-TCA-TGGA-ATGTTC-G-T-GTAGA-GC--GGCCTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGTT-TT-T--AAACACGTCGTTTAA-T-G-G-AGTGATGC-ACA-G-TC--------TGTTT-C----AT--CGATTTCAGA--A--TATATA--GAC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAAC
gi|3 : ggTTTTT--ATGTCTGAGG----CTTG--C--AAT-CC------------------GTGTGT----TCGT-G-TCAACCTCGTGTTTC--G-TTG---C-AGT--GTG-----AA-GAAACTTTTTTGATG-CTT---TAT-AATAC------CGCGT---AA-TAC-ACCAG-CAG--AG-ATATA-C-G-A-A--GATGCT-A-A-TAGCAAAAATC-ATGAATTT--GACAAATA---CATCTA-TTGTTG---TCGCAAA-TGATGATTCTATA----AATCT--T-ATG-ATCGGTTTCGAAT-AA--AAAT--TT-GA-TGT--TTTAT-ACGAA-AGA-GAAAGTA--GCA-CTA--T--TCCT-GTAA-TG-A-TGAAAACTATATA--TGGCTTT-GC--ACTGACATTTAAGTG-TATGTATAAGA-AGA-CAGTG--AAAAA-AAT---A-ATA------------------ATGAATCCATAATCAGGTTGTTG-GATTACGGACACTAAG-----TACGA-CA-ATAATGTCAAAC-GGACATCGAA-TT-TAG--AGAGA--AA----TACCTGACGAGT-----ATTGA-TAGAAAA---ACGTA-T---GCTTC-GTAACAAC-ATCTAA-TTG--C----GGCTCGCTATAGAC-AA------CAA-ACTATGAAC-GTATCAACTAAAACT-CCTAATTAAAGAA--TGAGCAGCACCAGCCCGGCCTGTTTTA--TAGG-A-TAATCATGTT----ACCG-AT-A--------------TTAATGTT--GAATATGA-C-TA-GT-TAC---TCGAACA-TCCTGTGTTACCTA-----A-T----GAGGTACGAAAAA--A---T-CGATAACCGCTAAA--C---ATTTGATTCTTACTT------T---AG-ATGGTGCAACATGAGCC-ACGAA--G-Tccccccctccccccacccccccccccccccccccctccaccttttttatgtctgaggcttgcaatccgtgtgttcgtgtcaacctcgtgtttcgttgcagtgtgaagaaacttttttgatgctttataataccgcgtaatacaccagcagagatatacgaagatgctaatagcaaaaatcatgaatttgacaaatacatctattgttgtcgcaaatgatgattctataaatcttatgatcggtttcgaataaaaatttgatgttttatacgaaagagaaagtagcactattcctgtaatgatgaaaactatatatggctttgcactgacatttaagtgtatgtataagaagacagtgaaaaaaataataatgaatccataatcaggttgttggattacggacactaagtacgacaataatgtcaaacggacatcgaatttagagagaaatacctgacgagtattgatagaaaaacgtatgcttcgtaacaacatctaattgcggctcgctatagacaacaaactatgaacgtatcaactaaaactcctaattaaagaatgagcagcaccagcccggcctgttttataggataatcatgttaccgatattaatgttgaatatgactagttactcgaacatcctgtgttacctaatgaggtacgaaaaaatcgataaccgctaaacatttgattcttactttagatggtgcaacatgagccacgaagtta
gi|4 : ggtctagcaatgcaaaaatatttatatttgtatggcaaaggatttctacacgtgagttgaaacgtaaaaaaccacatcaaaatcgggccgaaaataagcagaagttcatggcagttcccgtaatggccatttttacccatttcaaagagtgcccaatccaatcggagcgcaaaatagaaacgacccgaaatttctggcgacgtcatggaatgttcgtgtagagcggcctactatgggagacatagacagtttctggtttttaaacacgtcgtttaatggagtgatgcacagtctgtttcatcgatttcagaatatatagacaattctaatatcgaattaggtcaacccccccctccccccacccccccccccccccccccctccacctT--G--AAATA---CATACA-TTGT-----T-GCAA--TGAAGATTA-ATA----AA--T--T-ATG-A--GGTTGTG-AT-AAATAA-T--TT-GATTTT--TTTATA-CGAA-AGA-GAAAG----CGA-CTA--T--TCTT-G-AA-TG-A-TGAAA-CTATATTA-TGGTTTTG-C--ACTA-CATTT-ATTG-T-TGCGAAATA-AGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAAT-TATAAT-AGGTTGTTGTGATTA-GG------AA-----TA-------AT----TCCAAC-AGACATTGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTATTCTAGTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA--TCTAAATTGT-C----GGCTCGCTA-ATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TTA----GGT----A-CG-ATAG--------------GTAAT-TT--GAAT-TGA-CATA-GG-GAT----CAA--A-TC--GTGTT--CAA-----ATT----TAGGTA-GAAAAA--G---T--G--------TAA---C---ATT------TTACTT------TG-CAA----------CATG-GCT-ACGAA--------A-------GC-TATCGGA----AGAGA--AA-TTA-C-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATA----AT-G-GATGGA-CTGCA--------------TGGACTCTAGATGAGGAAGAAATTGCATCTGA-TAATCCT-GAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TCG-CTA----TACAATCAGAT-GAATGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--CGAGGTCGCAC--ATGCAGACAATCAATCAA--ATAA-ATTC----TAATTTTACATTTTAA--CTGT-T-TACCTAATT-----------------AAAAT-GTTTTACTTC--AACAT--TTTTGACT---TAT---GACA--CGTCG--------A-------------CAC-------GGCCTGGGG-A-TTAGATCCCATG-TTATCAG-------------G-AC----G-G---TAT-ACACAAAAACCCTCACGCTTCCC-TCC-AGCTATTCACA-CCAGC-AC-AA-A-TTGGCTCCG-CCCC-CACCTAAACTTAta
gi|5 : gG--CTC-TA-T-GC--AATGT-----CAAATAATAT--T----A-TT-GTGA-C--TGCAAAGGAATT-CT----TCAC-TG-A-T---TAA-ACAC--GTAGAAAAAA-----G---CCCATCAAAG--TCGA-GCGCAGAAATACA-C-ATA-GAT-AATAG-AGTGT-CCAAACGTG-TAATCAGTGGTGGTT-T-TTTTAGCTTGT--TTCCAAA---------AATC-------ATCG-AGC---AAAAA-TAG-AAACGCACCAGAAAAACGAGGC-A--TTTTTTTC-TG-TGACG--CA-TGGA-ATGTTCTAAT-GTAGG-GCCGG--CTAC-----------TA---TGG-AGAC-ATAAGACACA-GTT-TCTGCTT-TT-TTAAAATAGTTCG-TTAA-TGG---AGTGA-GA-A-ACGCTA--------TGTTTTC----ATCACGATTTAAAGCTA-GCAT-CA-AGAG---CA---TTC-TAATTAT--GAATTA-----------GGTCAACAACCGCTCAATCTTTTTTAATGT-TGAGG----CTAG--C-TAAT-CT--------CG---------TGTGTA-TAT-TC-G-TCAATTTCTTGTCTCTTGAGCG---ACAGT--GTGTCCGAAA-GAAACCTTT-TGTTG-CATCGCTATTAATACACTCATCCCGTGCGAG--AT-AAC-GACAGCAAT-AGA-A-TAG-ATA--AATGGT-ATACTAG-AAAATTA-ATGACTT---G--AAACATGACATTAA-TTAT-----T--------GA-TATTA-ATATATGAA--T--TTATG-A--GGTTGTG-AT-AACGAGATCATTTAATTTTCTTTTATA-CGAA-AGATGAAAGTAGACGA-CTA--TATTCTTTG-AA-TG-AATGAAA-CTATATAT-GGGTTTTGGC--ACTATCATTTCATTG-T-T----AATAGATAGT-ATA--AAAAAAAATac
gi|6 : gtAAA---A-ATA-T--GACGTT-GTAGCATA--TCT---TTTCTC----GGCTCACC-TA-ACAAATCTTTACAACA--ATACAC-GCGTGAATTAAA--T-CC--AT-----TA--TG------------------TGTTTTGATTAGATA-TAT----AGT------CGCATAA--------------TTAA---T--GAATCTAATCACA-GG-GAGGCATCGA--A-TC--GTGTT--TGATATGTATTACGGTAGG-A-GAAAAAATA---T-TG--------TAAGC-CATAATT------TTACTT--------GCAG-A---------ATG-GCT-ACGGATTG-TAACG-------GCGCAACGCATTCGAGAGACTGAACCATCACCGCAA-TAAGCAGCACTTTT-CGCGCT---TATAATTGAATGGGA-CTGGACT-----------CTAGATCCT-GATGATCA------TG-ATCT-----ATCTC--ACC-C--TACCTCGTCG-TCAGGACAGAC-G-TGAATAGGAGTGAA-TGCGCGA----CGT-----GA---A-TTTCCA-GACTGT-TGTGC---A-ACCGTGaa
gi|6 : AATCAA--T--ATATTCCTGATAAAATTATATAAAAA--ATTT-T-T-GCTAATTTTTTACAATTATACATT----TA-TTTTACCTT--AACAC--TTTTGAC-------------AA-CGTCGTAG-----AA-ATAG-AGGTAGCAC-------GATCCGGGA-A-ATAAATCCCGTC-TTATCA----------A--GA-A-----A-G---TAT-GC---------------------------GCAATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCT-TACTTAAACTTACCTAAGGTAAACCAGTT-TGTCAAAAAGCTCGGCtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatataatcaatatattcctgataaaattatataaaaaatttttgctaattttttacaattatacatttattttaccttaacacttttgacaacgtcgtagaaatagaggtagcacgatccgggaaataaatcccgtcttatcaagaaagtatgcgcaattcacacctgcataagattggctccgcccttacttaaacttacctaaggtaaaccagtttgtcaaaaagctcggccttt
gi|7 : aaaaatatgacgttgtagcatatcttttctcggctcacctaacaaatctttacaacaatacacgcgtgaattaaatccattatgtgttttgattagatatatagtcgcataattaatgaatctaatcacagggaggcatcgaatcgtgtttgatatgtattacggtaggagaaaaaatattgtaagccataattttacttgcagaatggctacggattgtaacggcgcaacgcattcgagagactgaaccatcaccgcaataagcagcacttttcgcgcttataattgaatgggactggactctagatcctgatgatcatgatctatctcaccctacctcgtcgtcaggacagacgtgaataggagtgaatgcgcgacgtgaatttccagactgttgtgcaaccgtgtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatatTC-TA-T-GC--AATAG-----AAAG-AATAT--TT-C-A-TT-GTGA-T--TGCAAAAGATTTTCT----TCAC-TA-AGT---TCA-AT----GTA-AAAAAAACCCAC---CGCATAACAA--TCG--GAGCAGAAACT-G-C-AGA-GTT-ATC-G-A---G-CC-----CG-CAAT-----GTGGCT-A-TTTTA-CCTGT--TCTCAAA---------A-T---C--CAATC-GAGC-----AAAATAG-AAACT-TCCGAAAA--TGAGGCTG--GTCTG--A-TG-TGACG-TCA-CAGT-ATA-TCTC-T-GTAGA-ACG-G--CTAG-----------TA---TGGGAGAC-AGAG---ACA-GTT-TC-GGCT-TT-TT-GAAC-AGTAG-TTAA-T-G-G-AGTGACAC-A-A-GCTT--------TGTTT-C----ATC-CGA-TTCGGA--A-GTAT-T--CGGC---AA---TTC-TAAT-ACC-GAATTA-----------GGcttt
gi|8 : gC----TACTTTTACAGCAAAA--CACT-C-T-CCT--TTTTT-TTAAT-ATATATT----T-GTTTTACTTC--AA-AT--ATTTGACTACATAT----ACAATCGTTGAAGATATAAA-ATAGCAG-TAACACAGTAACAGGCCCAGGG-A-TTAGATTCCGTGATTATCAGCGTGTTATCA--GG-AC----G-G---TATAACACAA---CTCTC-CACTGCCCTTCC-AGCAATTCACACCCTGC-AT-TATATTTAGCTCCA-CCCC-CATATAAACTTACCTGAGGTAAACCGG-G-GGTCGAAAAATCCGGg
gi|9 : ttttggattagaatagtacaatagataattatgaaattttgaTGTGC--AG-ACTGTGCGTTA-TGGATG------AGTTGCAC--A----GACAATGAATCAT--TTTA-TTTT----T--TTTTACAT---AAATCTTTCT-T-CCTAATTTTT-ATAATTATATATTTA--TA-TTTTACTTT--AACAT--TTTTGACT---TATAATGACAA-CGTTG--------AGTACAG--G-TAACAC-------AGCTCGGGT-A---AGATCCCGTG-TTATCAG---------AAAGGTAC----ATG---TAT-ACACAAG--CTCTCAC-CCTCC--CCC-GGCAATTCACA-CCTGC-GT-AAGA-TTGGCTCCGCCCCC-CACCTAAACTTACCTGAGGTAAACTGG-TGGGTCG-AAACCTCGGCTAtctttaaacaatagaattaccct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AATATGCTGAAGGGAGGGGGGGGGGGACAAACAACCAAAAATCAATATCTGTATGTATGA
Alignments
lowQualScore : 11 2222222 22222 2222222222 11 11 111 11111 11111 111 4444444444444444444 22 1111 11111 1 1 33333333333333333333 111 111 1 111 1111 2222222222 222222 1 222222222222 111 33333333333 11 1111 1111 666666666666666666 111 11 11111 11 22222 1 111 1 222222 222 11 1 1111 11111 222222222222 11111 1 11 111111 111 4444444 11 2 1111 1111111 11 1111 33 1 11 11 1 11 1 111 11 1 1 111 11 111 222222 1 1 1 1 7777777777777777777777777777 11 1 1 1 11 2222 1 1 33333 1 111 11 11 222 2222222 222222 11 11 11 66666666666666666666666666666 1111 222222 444444444444444 11 1 1111 11 11 11 2222222222222 44444444444444444444444444444 222222 6666666666666666666666 6666666666666666 1 2222 11 111 1 1 111 1 55555555555 1 11 111 1 1 6666666666666666666 1 11 11111 1 2222222 11 1111111 111 111 1111111 1111111 2222222 111 1111 6666666666666666666666 1111111 111 333333333333333333333333333 111 11 1 111
lowQualScore : 11 3 3 3 55 5555555 3 55 3 3 3 3 5555 5 8888 4 4 777 5 44444 88 5555555555 11 11 5 5 5 5 5 5 5 555 5 22222 5 22222 222 5 77 0 8888888888888888888 00 7777 1 5 5 77 77777 77 5 55 5 5 0 5 5 5 5 1 66666666666666666666 000 5 000 5 5 88 4 4 0 5 0 7 0 1 5 7 444 4 4444 5 2222222222 222222 1 1 77 5 000000000000 000 5 6 5 11111111111 11 99 2 4444 7777 88 8 888888888888888888 444 8 8 11 0 77777 11 00000 8 8 3 0 777 0 888888 777 33 0 6666 44444 000000000000 22222 0 11 222222 444 1 8 5555555 33 4 8 7777 6666666 8 55 2222 66 0 66 8 0 11 11 8 6 0 88 6 99999 6 6 6 6 6 1 111 00 99 99 3 6 6 3 777 11 6 444 8 111111 0 0 6 0 2 3 3 0 0000000000000000000000000000 22 0 0 0 9 33 0000 0 0 66666 0 444 8 8 11 8 3 0 88 444 1111111 11 5 0 333333 8 11 8 11 8 11 11111111111111111111111111111 0 8 8 1 7777 555555 8 0 777777777777777 88 11 6 8 0 8 8 7777 11 8 11 11 4 5555555555555 0 8 88888888888888888888888888888 333333 6666666666666666666666 8 8 0000000000000000 0 1111 33 9 333 0 0 88 8 0 111 5 8 8 55555555555 0 5 6 1 8 3 8 11 8 444 0 8 8 0 0 5555555555555555555 0 55 33333 0 5555555 33 3 9 4444444 3 111 333 99 3333333 3 3333333 1 5555555 99 99 111 4444 6 0000000000000000000000 8888888 33 5 888 000 222222222222222222222222222 5 777 1 7777 33 66 22 5 5 5 0 5 5 5 0 1 777 0 1
lowQualScore : .. . . . .. ....... . .. . . . . .... . .... . . ... . ..... .. .......... .. .. . . . . . . . ... . ..... . ..... ... . .. . ................... .. .... . . . .. ..... .. . .. . . . . . . . . .................... ... . ... . . .. . . . . . . . . . . ... . .... . .......... ...... . . .. . ............ ... . . . ........... .. .. . .... .... .. . .................. ... . . .. . ..... .. ..... . . . . ... . ...... ... .. . .... ..... ............ ..... . .. ...... ... . . ....... .. . . .... ....... . .. .... .. . .. . . .. .. . . . .. . ..... . . . . . . ... .. .. .. . . . . ... .. . ... . ...... . . . . . . . . ............................ .. . . . . .. .... . . ..... . ... . . .. . . . .. ... ....... .. . . ...... . .. . .. . .. ............................. . . . . .... ...... . . ............... .. .. . . . . . .... .. . .. .. . ............. . . ............................. ...... ...................... . . ................ . .... .. . ... . . .. . . ... . . . ........... . . . . . . . .. . ... . . . . . ................... . .. ..... . ....... .. . . ....... . ... ... .. ....... . ....... . ....... .. .. ... .... . ...................... ....... .. . ... ... ........................... . ... . .... .. .. .. . . . . . . . . . ... . .
lowQualScore : 00 6 6 6 00 5555555 6 00 6 6 6 6 9999 2 5555 0 0 888 0 00000 22 8888888888 99 99 0 0 0 0 0 0 0 666 0 55555 0 55555 555 7 99 1 0000000000000000000 33 1111 7 7 7 99 11111 99 7 99 7 7 7 7 4 7 7 4 99999999999999999999 000 7 000 7 7 00 4 4 1 0 1 9 7 4 7 9 333 0 9999 7 0000000000 444444 4 4 99 7 444444444444 000 7 7 7 77777777777 00 22 5 2222 5555 88 0 000000000000000000 444 0 0 00 8 88888 00 00000 0 0 2 0 555 0 888888 555 22 0 5555 00000 888888888888 00000 0 22 888888 000 0 0 4444444 66 0 0 0000 8888888 0 66 6666 22 8 44 0 6 00 44 0 0 8 33 7 33333 7 7 7 7 7 3 222 33 22 55 3 7 7 2 222 00 0 111 8 000000 0 0 5 0 5 2 2 0 5555555555555555555555555555 55 5 0 0 8 88 0000 0 0 88888 0 000 0 0 00 0 8 8 66 444 2222222 66 6 8 000000 0 00 0 00 0 00 22222222222222222222222222222 8 0 0 4 0000 888888 0 8 666666666666666 88 00 0 0 8 0 0 8888 00 0 00 00 6 4444444444444 8 0 00000000000000000000000000000 000000 0000000000000000000000 0 0 8888888888888888 0 2222 88 8 888 0 0 88 0 8 888 4 0 0 00000000000 8 6 4 4 0 2 0 00 0 000 8 0 0 0 0 5555555555555555555 0 88 88888 0 2222222 88 2 2 2222222 2 777 333 22 2222222 2 8888888 8 8888888 22 22 777 2222 7 6666666666666666666666 6666666 44 7 999 555 111111111111111111111111111 0 222 1 8888 66 11 44 7 7 7 1 7 7 7 4 7 555 8 0
consensus : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTTCT----TCAC-TG-AGT---TAA-AC-C--GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GC--G--CTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGG-G-AGTGACGN-A-A-GCNT--------TGTTT-C----ATC-CGATTTCAGA--A-GTAT-TA-NG-GC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT-CC--------CG--------GTGTGTA-TATCTT-G-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----AA-GAAACTTTT-TGATG-CTT---TAT-AATAC------CGCGT---AG-TAC-ACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAATT-ATGACTTT--G--AAATA---CATNTA-TTGTT----T-GCAAA-TGA-GATTA-ATA----AA--T--T-ATG-ATGGGTTGTG-AT-AAATAAAT-ATT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T--TCTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTGGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA-CA-AT----TCCAAC-AGACATCGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA-ATCTAA-TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TAA----GGT----A-CG-ATAA--------------TTAAT-TT--GAAT-TGA-CATA-GG-GAT---TCGA--A-TC--GTGTT--CGA-----ATT----TAGGTA-GAAAAA--A---T-TG--------TAAAC-C---ATT------TTACTT------TGGCAG-ACG------CATG-GCT-ACGAA--G-TAA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATATATAATTG-GTTGGA-CTGGACTC--G-ACGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAATCCCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TGC-CGA----TAC-----GAC-GA-TGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--NGAGGTCGCAC--ATGCAGACAATCAATCAAAT-AA-TTCTAATT---TTACATTTTAA--CTTT-T-T-CCTAATTTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TAGCAC-------GGCCCGGGG-A-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TAT-ACACAAG--CCCTCACGCTTCC--TCC-GGCNATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
Reference ( family-4295 ) : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTTCT----TCAC-TG-AGT---TAA-AC-C--GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GC--G--CTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGG-G-AGTGACGN-A-A-GCNT--------TGTTT-C----ATC-CGATTTCAGA--A-GTAT-TA-NG-GC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT-CC--------CG--------GTGTGTA-TATCTT-G-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----AA-GAAACTTTT-TGATG-CTT---TAT-AATAC------CGCGT---AG-TAC-ACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAATT-ATGACTTT--G--AAATA---CATNTA-TTGT-----TTGCAAA-TGA-GATTA-ATA----AA--T--T-ATG-ATGGGTTGTG-AT-AAATAAAT-ATT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T--TCTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTGGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA-CA-AT----TCCAAC-AGACATCGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA-ATCTAA-TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TAA----GGT----A-CG-ATAA--------------TTAAT-TT--GAAT-TGA-CATA-GG-GAT---TCGA--A-TC--GTGTT--CGA-----ATT----TAGGTA-GAAAAA--A---T-TG--------TAAAC-C---ATT------TTACTT------TGGCAG-ACG------CATG-GCT-ACGAA--G-TAA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATATATAATTG-GTTGGA-CTGGACTC--G-ACGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAATCCCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TGC-CGA----TAC-----GAC-GA-TGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--NGAGGTCGCAC--ATGCAGACAATCAATCAANT-AA-TTCTAATT---TTACATTTTAA--CTTT-T-T-CCTAATTTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TAGCAC-------GGCCCGGGG-A-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TAT-ACACAAG--CCCTCACGCTTCC--TCC-GGCNATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
gi|1 : AGCG--TTCGTACT-GC--AATGGGCTGGCAAA-AATAT--TT-TTA-TT-GTGA-CCGTGCAAAGGATTTCTTACGTTCAC-TG-AGCCTCTAATAC-CCCGTA-AAAAAC-----CG--CGCATCAAAAAATCGATGCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CGACGAT-----GTAGCC-TATTTCA-CCTGTGATCTCAAA---------A-TCGCCGACAATCG-AGCCACAAAAATTAGCAAACG-ACCGAAAA--CGAGGC-A--TCTTT--C-TG--GACG-TCA-TG-A-ATGTTCTA-T-GTAGAAGA--G----AC-----------TAAGTCGGGACACGATAG---ACATGTTGTCCTGCTGTTGTTAAAACGAGTCGGTTAAATGGCG-AGTGATGG-AGA-GCGGCGGGGGGGTGGTT-C----ATC-CGATTTCAGA--ATGTAT-TA-TG-AC---AAATTCTC-TAAT-ATCCGAATGGAGGGGGGGGGGGGTCAACAACCGC--AATCTTTGT--ATGTCTGAGGGGGGCT-GAGC-TAAT-CCGGGGGGGGCGCCCAGGCTGGGGGTACTATCTT-GGTCAATTCCGTGAACC--GAGCAGCAA-GGTTAGTG-----AAAGAAACTCTT-TAA-G-CTT---TAT-AATGC------CGCGT---AGCTACCACC-G-CAGCATG-ATA-A-C-GCA-ACTAATGGTGA-A-TAG-AAAAATTTATGACTTT--G--AAATA---CATATATTTGTTTTTCTTGCAAATTGAGGATTA-ATA----AA--TCCT-ATGAATGGGTTGTT-CTGAAATAAATAATT-GA-TTT--TTCATAACGAACAGAGGAAAGTAGCCGACCTAATT--TCTT-G-AATTGCA-TGAAACCTATATCTATGGTTTGGGCGGACGTACATTT-ATTGCT-TGCGAAATTAAGACC-GTGGAAAAAATAA-T-GAAATA--ATTAACATCA-GCTTAATGAATCTATAAT-AGGTT-T--TGATTA-GG------CA------AC---CA-AT----TTCAA--AGACATTGAAGTTGTAGTAACAGACGAAGAGTTA-CTGAC-AGT-----ATTGATTAGAAAACATA-GTAGTCAGGCTTCGGTAAC-CACATCCTC-TTGTGCAGCGGGCTCGCTATATACAAA------ACA-A--ATGCACGGCATCAACTAAA--TCCC--AT-----GAATTG------------------TGTTTTGATTAGG-ATTTA----GGCCTTAA-CG-ATAAGGTGGGGGTGGGGGTTAAT-TTTGGAAT-TGA-CATA-GGCGAT---CCGA--ATTC--ATGTT--CAA-----ATT----TAGGTA-GAAAAA--AGGGTGTG--------GAGACGC---ATT------TTACTTGGGGGGGGGCAG-ACG------GATG-GTTGACGAA-----AA-A-------GC-TATCGGA----AGAGA--AATCTGAC-CCGCCATTAAG-AGCCCCTTTGCGC-TTATG---AATGG-ATTGGA-CTCGACTC--C-ACGG--C----------GTGAGGAAGAAATTGCATCTGA-TAATCCTTGAACACCAACCCTCGTCGTTCAGGAC---CAGTTG-ATAGGAAGGAA-TGC-CGACTATTAC-----AACAGA-TGTCCAGGACTGCATGTGCCAAA-GCCGTGCGTTATTGGACGT--AGA-GTCGCACTTATGCAGACAATCAATCAAACAAA-TTCTAATT---TTACATTTTAA--CT-----------GTTTTT-AC----CTAAGTTAAAATAG-TTTACTTCGAAACATGGTTTTGACT---TAT---GACAA-CGTCG--------A-------------CAC-------GGCCTGAGGCATTTAGAGTCCATG--TATCAG---------C--GA-AC----G-GGTATAT-ACACAAAC-CCCTCACG
gi|10 : taacC-TA-TTGC--AATG------CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTCCT----TCAC-TG-AGT---TAA-A--C--GT--AAAAAA-----C---CGCATC-AAA--TCG--GCGCAGAAATA-A-C-AAG-TTT-ATT-G-A---T-CC-----AG-TAAT-----GTGGCTAT-TTTTA-CCTGT--TTTCAAA---------------T--CAATC-GAGC----AATAATAG-AAATG-ACCGGAAA--CGAGGC-ATTTTTTT--C-TG-TGACG-TCA-TGGATATG-TCTA-T-GTAGA-GC--GA-CTACTTATGGGTACTTA---TGGGAGAC-ATAG---ACA-GTT-TCT-GCT-TT-at
gi|11 : CAG--G-TAGCAC-------GAT----GA-A-T---ACCCCGTA-T-ATT-G---------A--GG-AATTAAG-G---TAC-ACACCGG--CTAGCAGGGGCCC--TTCAGGCC--TCACA-TCTACCAC-AA-A-TTAGCTCCG-CTCC-TATTT-AACTTACCTTAGGAAAACCGA-CAGGTTGAGAA
gi|12 : ttacagaaacatagaggtaatgATCCTGTG-CATTCAG---------A--AA-AT----A-----TAT-TCACAAG--CTAT-A---TTCC--TTC-GGCGCATCACA-CCTAC-TT-AGAA-TTAGCCCCG-CCCCTCATTTTA-CTTACCTGGGGAAAACCGA-T-catagattttgaaagtgaaatcatagtttt
gi|13 : gtatgaaaacgaagaggtacagcaggttacaaaggtaccTC-TA-T-GC--AGTGG------AAT-AACAT--TT-T-A-TT-GTGA-T--TGCAAAGGATTTTCC----TCAC-TG-AGT---TAA-A--T--GT--AAAAAA-----C---TGCATCAAAA--TCG--GCGCAGAAATA-A-CAAGA-GTT-ATT-G-A---T-CC-----GG-TAAT-----GTGGCT-A-TTTTA-CCTGT--TTTCAAA---------t
gi|14 : ggCCCCTT-CGC-TTATATATAAT-G-GTTGGAACTGGACTCTGG-ATGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAAT-CCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATA
gi|15 : AATCG-AGC---AAAA-ATAG-AAACG-ATTGAAAA--CAAGGC-AG-GTCTT--C-TG-TGACG-TCA-TACA-ACG-TCTC-T-GTATT-GC--GT-CTAA-----------TA---TGGGAGAC-ATGG---ACA-TTT-TCT-GCT-TT-TTAAA
gi|16 : ACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-A--CCTAAT-CC------------------GTGTGTA-TATCTT-G-TCAATTTCGTCTCTC--GAGCG---A-GGT--GTG-----AA-GAAACCTTT-Tc
gi|17 : CT-TT-TTAAA-CAA-TAG-TTAA-TGG-GGAGTGACGCCA-A-GCCT--------TGTTT-TCAAAATC-CGATT-CAGA--A-GTAT-TATTG-GCG--AA---TTC-TGAG-AAC-GAATt
gi|18 : CT-TT-TTAAA-CAA-TAG-TTAA-TGG-GGAGTGACGGCA-A-GCCT--------TGTTT-TCAA-ATCGCGATTTCAGA--A-GTAT-TATTG-GCGCAAA---TTC-TGA
gi|19 : T----TCAC-TG-AGT---TAA-AC----GTA-AAAAAA----------GCATCAAAA--TTG--GCGCAGAAATA-A-C---A-GTT-ATT-G-A---T-CC-----CA-TAAT-----GTGGCTAT-TTTT
gi|2 : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGAAC--TGCA--GGATTTTCT----TCAC-TGGAGT---TAA-AC-C--GTA-AAAAAA-----CAACCGCATCAAAAA-TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---TGCC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCAAAGC---AAAAAATAG-AA-CG-ACCGGAAA--CGAGGC-A--TTTTT--CATG-TGACGCTCAATGGA-ATGGTCTA-TCGTAGACGC--G--CTA------------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-CTG-G-AGTGATGA-A-A-GCAT--------TGTTT-C----ATC-CG--TTCAGA--A-GTAT-AA-AT-AC---AA---TTCCTAAT-ATC-GAATTA-----------GGTCAACATCCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAATGTC--------CG--------GTGTGTA--ATCTTTG-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----GA-GAAATTTTT-TGATGGCTT---TAT-AATAC------CGCGTC--AG-TAC-ACC-A--AGCCATTATA-AAC-G-A-A--AATGGT-A-A-TAG-AAAAATT-AGAACTTTTTG--AAATA---CATCTA-TTGT-----T-GCAAA-TGA-GATTA-ATA----AA--T--G-ATG-ATGGGTTGTG-A--AAATACAT--TT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T---CTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTAGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATTTGACATACAATT-ACATCAAGCTT-ATGAATTTATAAT-AGGTTGTTGTAATTA-GG------AAATAAGTACGAACAGAT----TTCAACCAGACAT-GAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTA-CACA-ATCTA--TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------T-TTTTGATTAGG-A-TAA----GGT----A-CG-ATAG--------------GTAAT-TT--GAAT-TGA-CATCCGA-GAT---TGGA--A-TC--GTGTT--CAA-----ATT-----AGGTA-GAAAA-------T-TG--------TAAAC-C---ATT------TTACTT------TGGCATCATG------CATG-GCT-ACGAA--GGTAA-ATAGCAACGC-TATCGGA----AGAGA--AAATTATT-CAGCCA-TAAG-AGCCCCTT--CGC-TTATATATAATTG-GTTGGA-CTGGACTT--GGATGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGAATAATCCCCGAAC-C--AACCCCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAAATGC-CGA----TAC------------TGTCCA-GACTG----TGC--AATACCGTGCGTTA-TGGATGTCCGAAGGTCGCAC--ATGC-GACAATCAATCAAC--AA-TTCTAATT---TTGCATTTTAA--CTTT-TAT-CCTAA-TTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TTGTAC-------GGCTGGGGG-A-TTAG-TCCCATG-T--TTAT---------A--GG-AC----G-G---TAT-ACACAAA--CCCTCACGCTTCC--TCC-AGCTATTCACA-CCTGC-ATGAAGA-TTGCTTCCG--TCC-CACCTAAACT--CCTGAGGTAAG-CGG-T-GGGCGAAAACCTCGGCTA
gi|20 : AGGGATTTC-GA-T-GCCAAATGG----------AATATCGTT-T-AATT-GTGA-T--TGCAAAGG-TTTTC-----TCAC-TG-A
gi|21 : taa--CGA-CTA--T--TCTT-G-AA-TG-A-TG-AAACTATATCT-TGGTTTT-AC--ACT-ACATTT-ATTG-T-TGCGAAATctattaagt
gi|23 : agTC-TA-T-GC--AATGG------AAT-AACAA--TT-T-A-TT-GTGA-T--TGCAAAGCATTTTCC----TCAC-TG-AGT---T
gi|24 : gAGGG--T-C-TA-T-GC--AATG------CAAA-AATAT--TA-T-A-TT-GTGA-C--TGCAAAGGATTtga
gi|25 : C-GAATTA-----------GGTCAACAACCGC--AATCTTATT--AGGTGTGAGG----CT-
gi|26 : TC-TA-T-GC--AATG------CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAA
gi|3 : ggTC-TA---GC--AATG------CAAA-AATAT--TTAT-A-TTTGT-A-T--GGCAAAGGATTT-CT----ACACGTG-AGT---TGA-AA-C--GTA-AAAAA------C---CACATCAAAA--TCG--GGCCGAAAATA-AGC-AGAAGTTCATG-GCAGT-T-CC-----CG-TAAT-----G-GCCA-T-TTTTA-CCCAT--TT-CAAAGAGTGCCCAA-TC--C---AATCGGAGC---GCAAAATAG-AAACG-ACCCGAAA--------------TTT--C-TGGCGACG-TCA-TGGA-ATGTTC-G-T-GTAGA-GC--GGCCTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGTT-TT-T--AAACACGTCGTTTAA-T-G-G-AGTGATGC-ACA-G-TC--------TGTTT-C----AT--CGATTTCAGA--A--TATATA--G-AC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAAC
gi|3 : ggTTTTT--ATGTCTGAGG----CTTG--C--AAT-CC------------------GTGTGT----TCGT-G-TCAACCTCGTGTTTC--G-TTG---C-AGT--GTG-----AA-GAAACTTTTTTGATG-CTT---TAT-AATAC------CGCGT---AA-TAC-ACCAG-CAG--AG-ATATA-C-G-A-A--GATGCT-A-A-TAGCAAAAATC-ATGAATTT--GACAAATA---CATCTA-TTGTTG---TCGCAAA-TGATGATTCTATA----AATCT--T-ATG-ATCGGTTTCGAAT-AA--AAAT--TT-GA-TGT--TTTAT-ACGAA-AGA-GAAAGTA--GCA-CTA--T--TCCT-GTAA-TG-A-TGAAAACTATATA--TGGCTTT-GC--ACTGACATTTAAGTG-TATGTATAAGA-AGA-CAGTG--AAAAA-AAT---A-ATA------------------ATGAATCCATAATCAGGTTGTTG-GATTACGGACACTAAG-----TACGA-CA-ATAATGTCAAAC-GGACATCGAA-TT-TAG--AGAGA--AA----TACCTGACGAGT-----ATTGA-TAGAAAA---ACGTA-T---GCTTC-GTAACAAC-ATCTAA-TTG--C----GGCTCGCTATAGAC-AA------CAA-ACTATGAAC-GTATCAACTAAAACT-CCTAATTAAAGAA--TGAGCAGCACCAGCCCGGCCTGTTTTA--TAGG-A-TAATCATGTT----ACCG-AT-A--------------TTAATGTT--GAATATGA-C-TA-GT-TAC---TCGAACA-TCCTGTGTTACCTA-----A-T----GAGGTACGAAAAA--A---T-CGATAACCGCTAAA--C---ATTTGATTCTTACTT------T---AG-ATGGTGCAACATGAGCC-ACGAA--G-Tccccccctccccccacccccccccccccccccccctccaccttttttatgtctgaggcttgcaatccgtgtgttcgtgtcaacctcgtgtttcgttgcagtgtgaagaaacttttttgatgctttataataccgcgtaatacaccagcagagatatacgaagatgctaatagcaaaaatcatgaatttgacaaatacatctattgttgtcgcaaatgatgattctataaatcttatgatcggtttcgaataaaaatttgatgttttatacgaaagagaaagtagcactattcctgtaatgatgaaaactatatatggctttgcactgacatttaagtgtatgtataagaagacagtgaaaaaaataataatgaatccataatcaggttgttggattacggacactaagtacgacaataatgtcaaacggacatcgaatttagagagaaatacctgacgagtattgatagaaaaacgtatgcttcgtaacaacatctaattgcggctcgctatagacaacaaactatgaacgtatcaactaaaactcctaattaaagaatgagcagcaccagcccggcctgttttataggataatcatgttaccgatattaatgttgaatatgactagttactcgaacatcctgtgttacctaatgaggtacgaaaaaatcgataaccgctaaacatttgattcttactttagatggtgcaacatgagccacgaagtta
gi|4 : ggtctagcaatgcaaaaatatttatatttgtatggcaaaggatttctacacgtgagttgaaacgtaaaaaaccacatcaaaatcgggccgaaaataagcagaagttcatggcagttcccgtaatggccatttttacccatttcaaagagtgcccaatccaatcggagcgcaaaatagaaacgacccgaaatttctggcgacgtcatggaatgttcgtgtagagcggcctactatgggagacatagacagtttctggtttttaaacacgtcgtttaatggagtgatgcacagtctgtttcatcgatttcagaatatatagacaattctaatatcgaattaggtcaacccccccctccccccacccccccccccccccccccctccacctT--G--AAATA---CATACA-TTGT-----T-GCAA--TGAAGATTA-ATA----AA--T--T-ATG-A--GGTTGTG-AT-AAATAA-T--TT-GATTTT--TTTATA-CGAA-AGA-GAAAG----CGA-CTA--T--TCTT-G-AA-TG-A-TGAAA-CTATATTA-TGGTTTTG-C--ACTA-CATTT-ATTG-T-TGCGAAATA-AGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAAT-TATAAT-AGGTTGTTGTGATTA-GG------AA-----TA-------AT----TCCAAC-AGACATTGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTATTCTAGTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA--TCTAAATTGT-C----GGCTCGCTA-ATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TTA----GGT----A-CG-ATAG--------------GTAAT-TT--GAAT-TGA-CATA-GG-GAT----CAA--A-TC--GTGTT--CAA-----ATT----TAGGTA-GAAAAA--G---T--G--------TAA---C---ATT------TTACTT------TG-CAA----------CATG-GCT-ACGAA--------A-------GC-TATCGGA----AGAGA--AA-TTA-C-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATA----AT-G-GATGGA-CTGCA--------------TGGACTCTAGATGAGGAAGAAATTGCATCTGA-TAATCCT-GAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TCG-CTA----TACAATCAGAT-GAATGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--CGAGGTCGCAC--ATGCAGACAATCAATCAAAT-AAATTCTAATT---TTACATTTTAA--CTGT-T-TACCTAATT-----------------AAAAT-GTTTTACTTC--AACAT--TTTTGACT---TAT---GACA--CGTCG--------A-------------CAC-------GGCCTGGGG-A-TTAGATCCCATG-TTATCAG-------------G-AC----G-G---TAT-ACACAAAAACCCTCACGCTTCCC-TCC-AGCTATTCACA-CCAGC-AC-AA-A-TTGGCTCCG-CCCC-CACCTAAACTTAta
gi|5 : gG--CTC-TA-T-GC--AATGT-----CAAATAATAT--T----A-TT-GTGA-C--TGCAAAGGAATT-CT----TCAC-TG-A-T---TAA-ACAC--GTAGAAAAAA-----G---CCCATCAAAG--TCGA-GCGCAGAAATACA-C-ATA-GAT-AATAG-AGTGT-CCAAACGTG-TAATCAGTGGTGGTT-T-TTTTAGCTTGT--TTCCAAA---------AATC-------ATCG-AGC---AAAAA-TAG-AAACGCACCAGAAAAACGAGGC-A--TTTTTTTC-TG-TGACG--CA-TGGA-ATGTTCTAAT-GTAGG-GCCGG--CTAC-----------TA---TGG-AGAC-ATAAGACACA-GTT-TCTGCTT-TT-TTAAAATAGTTCG-TTAA-TGG---AGTGA-GA-A-ACGCTA--------TGTTTTC----ATCACGATTTAAAGCTA-GCAT-CA-AGAGC---A----TTC-TAATTAT--GAATTA-----------GGTCAACAACCGCTCAATCTTTTTTAATGT-TGAGG----CTAG--C-TAAT-CT--------CG---------TGTGTA-TAT-TC-G-TCAATTTCTTGTCTCTTGAGCG---ACAGT--GTGTCCGAAA-GAAACCTTT-TGTTG-CATCGCTATTAATACACTCATCCCGTGCGAG--AT-AAC-GACAGCAAT-AGA-A-TAG-ATA--AATGGT-ATACTAG-AAAATTA-ATGACTT---G--AAACATGACATTAA-TTAT-----T--------GA-TATTA-ATATATGAA--T--TTATG-A--GGTTGTG-AT-AACGAGATCATTTAATTTTCTTTTATA-CGAA-AGATGAAAGTAGACGA-CTA--TATTCTTTG-AA-TG-AATGAAA-CTATATAT-GGGTTTTGGC--ACTATCATTTCATTG-T-T----AATAGATAGT-ATA--AAAAAAAATac
gi|6 : gtAAA---A-ATA-T--GACGTT-GTAGCATA--TCT---TTTCTC----GGCTCACC-TA-ACAAATCTTTACAACA--ATACAC-GCGTGAATTAAA--T-CC--AT-----TA--TG------------------TGTTTTGATTAGATA-TAT----AGT------CGCATAA--------------TTAA---T--GAATCTAATCACA-GG-GAGGCATCGA--A-TC--GTGTT--TGATATGTATTACGGTAGG-A-GAAAAAATA---T-TG--------TAAGC-CATAATT------TTACTT--------GCAG-A---------ATG-GCT-ACGGATTG-TAACG-------GCGCAACGCATTCGAGAGACTGAACCATCACCGCAA-TAAGCAGCACTTTT-CGCGCT---TATAATTGAATGGGA-CTGGACT-----------CTAGATCCT-GATGATCA------TG-ATCT-----ATCTC--ACC-C--TACCTCGTCG-TCAGGACAGAC-G-TGAATAGGAGTGAA-TGCGCGA----CGT-----GA---A-TTTCCA-GACTGT-TGTGC---A-ACCGTGaa
gi|6 : ATAATCAAT---AT-AT-TCCTGATAAAATTATATAAAAA--ATTT-T-T-GCTAATTTTTTACAATTATACATT----TA-TTTTACCTT--AACAC--TTTTGAC-------------AA-CGTCGTAG-----AA-ATAG-AGGTAGCAC-------GATCCGGGA-A-ATAAATCCCGTC-TTATCA----------A--GA-A-----A-G---TAT-GC---------------------------GCAATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCT-TACTTAAACTTACCTAAGGTAAACCAGTT-TGTCAAAAAGCTCGGCtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatataatcaatatattcctgataaaattatataaaaaatttttgctaattttttacaattatacatttattttaccttaacacttttgacaacgtcgtagaaatagaggtagcacgatccgggaaataaatcccgtcttatcaagaaagtatgcgcaattcacacctgcataagattggctccgcccttacttaaacttacctaaggtaaaccagtttgtcaaaaagctcggccttt
gi|7 : aaaaatatgacgttgtagcatatcttttctcggctcacctaacaaatctttacaacaatacacgcgtgaattaaatccattatgtgttttgattagatatatagtcgcataattaatgaatctaatcacagggaggcatcgaatcgtgtttgatatgtattacggtaggagaaaaaatattgtaagccataattttacttgcagaatggctacggattgtaacggcgcaacgcattcgagagactgaaccatcaccgcaataagcagcacttttcgcgcttataattgaatgggactggactctagatcctgatgatcatgatctatctcaccctacctcgtcgtcaggacagacgtgaataggagtgaatgcgcgacgtgaatttccagactgttgtgcaaccgtgtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatTC-TA-T-GC--AATAG-----AAAG-AATAT--TT-C-A-TT-GTGA-T--TGCAAAAGATTTTCT----TCAC-TA-AGT---TCA-AT----GTA-AAAAAAACCCAC---CGCATAACAA--TCG--GAGCAGAAACT-G-C-AGA-GTT-ATC-G-A---G-CC-----CG-CAAT-----GTGGCT-A-TTTTA-CCTGT--TCTCAAA---------A-T---C--CAATC-GAGC-----AAAATAG-AAACT-TCCGAAAA--TGAGGCTG--GTCTG--A-TG-TGACG-TCA-CAGT-ATA-TCTC-T-GTAGA-ACG-G--CTAG-----------TA---TGGGAGAC-AGAG---ACA-GTT-TC-GGCT-TT-TT-GAAC-AGTAG-TTAA-T-G-G-AGTGACAC-A-A-GCTT--------TGTTT-C----ATC-CGA-TTCGGA--A-GTAT-T--CG-GC---AA---TTC-TAAT-ACC-GAATTA-----------GGcttt
gi|8 : gCTACTT---TTACAGCAAAA--CACT-C-T-CCT--TTTTT-TTAAT-ATATATT----T-GTTTTACTTC--AA-AT--ATTTGACTACATAT----ACAATCGTTGAAGATATAAA-ATAGCAG-TAACACAGTAACAGGCCCAGGG-A-TTAGATTCCGTGATTATCAGCGTGTTATCA--GG-AC----G-G---TATAACACAA---CTCTC-CACTGCCCTTCC-AGCAATTCACACCCTGC-AT-TATATTTAGCTCCA-CCCC-CATATAAACTTACCTGAGGTAAACCGG-G-GGTCGAAAAATCCGGg
gi|9 : ttttggattagaatagtacaatagataattatgaaattttgaTGTGC--AG-ACTGTGCGTTA-TGGATG------AGTTGCAC--A----GACAATGAATCATTT-TA-TTTTT-TT---TTACAT---AAATCTTTCT-T-CCTAATTTTT-ATAATTATATATTTA--TA-TTTTACTTT--AACAT--TTTTGACT---TATAATGACAA-CGTTG--------AGTACAG--G-TAACAC-------AGCTCGGGT-A---AGATCCCGTG-TTATCAG---------AAAGGTAC----ATG---TAT-ACACAAG--CTCTCAC-CCTCC--CCC-GGCAATTCACA-CCTGC-GT-AAGA-TTGGCTCCGCCCCC-CACCTAAACTTACCTGAGGTAAACTGG-TGGGTCG-AAACCTCGGCTAtctttaaacaatagaattaccct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AATATGCTGAAGGGAGGGGGGGGGGGACAAACAACCAAAAATCAATATCTGTATGTATGA
Alignments
lowQualScore : 11 2222222 22222 2222222222 11 11 111 11111 11111 111 4444444444444444444 22 1111 11111 1 1 33333333333333333333 111 111 1 111 1111 2222222222 222222 1 222222222222 111 33333333333 11 1111 1111 666666666666666666 111 11 11111 11 22222 1 111 1 222222 222 11 1 1111 11111 222222222222 11111 1 11 111111 111 4444444 11 2 1111 1111111 11 1111 33 1 11 11 1 11 1 111 11 1 1 111 11 111 222222 1 1 1 1 7777777777777777777777777777 11 1 1 1 11 2222 1 1 33333 1 111 11 11 222 2222222 222222 11 11 11 66666666666666666666666666666 1111 222222 444444444444444 11 1 1111 11 11 11 2222222222222 44444444444444444444444444444 222222 6666666666666666666666 6666666666666666 1 2222 11 111 1 1 111 1 55555555555 1 11 111 1 1 6666666666666666666 1 11 11111 1 2222222 11 1111 111 111 111 1111111 1111111 2222222 111 1111 6666666666666666666666 1111111 111 333333333333333333333333333 111 11 1 111
lowQualScore : 11 3 3 3 55 5555555 3 55 3 3 3 3 5555 5 8888 4 4 777 5 44444 88 5555555555 11 11 5 5 5 5 5 5 5 555 5 22222 5 22222 222 5 77 0 8888888888888888888 00 7777 1 5 5 77 77777 77 5 55 5 5 0 5 5 5 5 1 66666666666666666666 000 5 000 5 5 88 4 4 0 5 0 7 0 1 5 7 444 4 4444 5 2222222222 222222 1 1 77 5 000000000000 000 5 6 5 11111111111 11 99 2 4444 7777 88 8 888888888888888888 444 8 8 11 0 77777 11 00000 8 8 3 0 777 0 888888 777 33 0 6666 44444 000000000000 22222 0 11 222222 444 1 8 5555555 33 4 8 7777 6666666 8 55 2222 66 0 66 8 0 11 11 8 6 0 88 6 99999 6 6 6 6 6 1 111 00 99 99 3 6 6 3 777 11 6 444 8 111111 0 0 6 0 2 3 3 0 0000000000000000000000000000 22 0 0 0 9 33 0000 0 0 66666 0 444 8 8 11 8 3 0 88 444 1111111 11 5 0 333333 8 11 8 11 8 11 11111111111111111111111111111 0 8 8 1 7777 555555 8 0 777777777777777 88 11 6 8 0 8 8 7777 11 8 11 11 4 5555555555555 0 8 88888888888888888888888888888 333333 6666666666666666666666 8 8 0000000000000000 0 1111 33 9 333 0 0 88 8 0 111 5 8 8 55555555555 0 5 6 1 8 3 8 11 8 444 0 8 8 0 0 5555555555555555555 0 55 33333 0 5555555 33 3 5 55 6666 111 3 111 333 99 3333333 3 3333333 1 5555555 99 99 111 4444 6 0000000000000000000000 8888888 33 5 888 000 222222222222222222222222222 5 777 1 7777 33 66 22 5 5 5 0 5 5 5 0 1 777 0 1
lowQualScore : .. . . . .. ....... . .. . . . . .... . .... . . ... . ..... .. .......... .. .. . . . . . . . ... . ..... . ..... ... . .. . ................... .. .... . . . .. ..... .. . .. . . . . . . . . .................... ... . ... . . .. . . . . . . . . . . ... . .... . .......... ...... . . .. . ............ ... . . . ........... .. .. . .... .... .. . .................. ... . . .. . ..... .. ..... . . . . ... . ...... ... .. . .... ..... ............ ..... . .. ...... ... . . ....... .. . . .... ....... . .. .... .. . .. . . .. .. . . . .. . ..... . . . . . . ... .. .. .. . . . . ... .. . ... . ...... . . . . . . . . ............................ .. . . . . .. .... . . ..... . ... . . .. . . . .. ... ....... .. . . ...... . .. . .. . .. ............................. . . . . .... ...... . . ............... .. .. . . . . . .... .. . .. .. . ............. . . ............................. ...... ...................... . . ................ . .... .. . ... . . .. . . ... . . . ........... . . . . . . . .. . ... . . . . . ................... . .. ..... . ....... .. . . .. .... ... . ... ... .. ....... . ....... . ....... .. .. ... .... . ...................... ....... .. . ... ... ........................... . ... . .... .. .. .. . . . . . . . . . ... . .
lowQualScore : 00 6 6 6 00 5555555 6 00 6 6 6 6 9999 2 5555 0 0 888 0 00000 22 8888888888 99 99 0 0 0 0 0 0 0 666 0 55555 0 55555 555 7 99 1 0000000000000000000 33 1111 7 7 7 99 11111 99 7 99 7 7 7 7 4 7 7 4 99999999999999999999 000 7 000 7 7 00 4 4 1 0 1 9 7 4 7 9 333 0 9999 7 0000000000 444444 4 4 99 7 444444444444 000 7 7 7 77777777777 00 22 5 2222 5555 88 0 000000000000000000 444 0 0 00 8 88888 00 00000 0 0 2 0 555 0 888888 555 22 0 5555 00000 888888888888 00000 0 22 888888 000 0 0 4444444 66 0 0 0000 8888888 0 66 6666 22 8 44 0 6 00 44 0 0 8 33 7 33333 7 7 7 7 7 3 222 33 22 55 3 7 7 2 222 00 0 111 8 000000 0 0 5 0 5 2 2 0 5555555555555555555555555555 55 5 0 0 8 88 0000 0 0 88888 0 000 0 0 00 0 8 8 66 444 2222222 66 6 8 000000 0 00 0 00 0 00 22222222222222222222222222222 8 0 0 4 0000 888888 0 8 666666666666666 88 00 0 0 8 0 0 8888 00 0 00 00 6 4444444444444 8 0 00000000000000000000000000000 000000 0000000000000000000000 0 0 8888888888888888 0 2222 88 8 888 0 0 88 0 8 888 4 0 0 00000000000 8 6 4 4 0 2 0 00 0 000 8 0 0 0 0 5555555555555555555 0 88 88888 0 2222222 88 2 6 77 2222 777 2 777 333 22 2222222 2 8888888 8 8888888 22 22 777 2222 7 6666666666666666666666 6666666 44 7 999 555 111111111111111111111111111 0 222 1 8888 66 11 44 7 7 7 1 7 7 7 4 7 555 8 0
consensus : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTTCT----TCAC-TG-AGT---TAA-AC-C--GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GC--G--CTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGG-G-AGTGACGN-A-A-GCNT--------TGTTT-C----ATC-CGATTTCAGA--A-GTAT-TA-NG-GC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT-CC--------CG--------GTGTGTA-TATCTT-G-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----AA-GAAACTTTT-TGATG-CTT---TAT-AATAC------CGCGT---AG-TAC-ACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAATT-ATGACTTT--G--AAATA---CATNTA-TTGTT----T-GCAAA-TGA-GATTA-ATA----AA--T--T-ATG-ATGGGTTGTG-AT-AAATAAAT-ATT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T--TCTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTGGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA-CA-AT----TCCAAC-AGACATCGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA-ATCTAA-TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TAA----GGT----A-CG-ATAA--------------TTAAT-TT--GAAT-TGA-CATA-GG-GAT---TCGA--A-TC--GTGTT--CGA-----ATT----TAGGTA-GAAAAA--A---T-TG--------TAAAC-C---ATT------TTACTT------TGGCAG-ACG------CATG-GCT-ACGAA--G-TAA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATATATAATTG-GTTGGA-CTGGACTC--G-ACGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAATCCCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TGC-CGA----TAC-----GAC-GA-TGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--NGAGGTCGCAC--ATGCAGACAATCAATCAAAT-AA-TT---CTAATT---TTACATTTTAA--CTTT-T-T-CCTAATTTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TAGCAC-------GGCCCGGGG-A-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TAT-ACACAAG--CCCTCACGCTTCC--TCC-GGCNATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
Reference ( family-4295 ) : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTTCT----TCAC-TG-AGT---TAA-AC-C--GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GC--G--CTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGG-G-AGTGACGN-A-A-GCNT--------TGTTT-C----ATC-CGATTTCAGA--A-GTAT-TA-NG-GC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT-CC--------CG--------GTGTGTA-TATCTT-G-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----AA-GAAACTTTT-TGATG-CTT---TAT-AATAC------CGCGT---AG-TAC-ACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAATT-ATGACTTT--G--AAATA---CATNTA-TTGT-----TTGCAAA-TGA-GATTA-ATA----AA--T--T-ATG-ATGGGTTGTG-AT-AAATAAAT-ATT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T--TCTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTGGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA-CA-AT----TCCAAC-AGACATCGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA-ATCTAA-TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TAA----GGT----A-CG-ATAA--------------TTAAT-TT--GAAT-TGA-CATA-GG-GAT---TCGA--A-TC--GTGTT--CGA-----ATT----TAGGTA-GAAAAA--A---T-TG--------TAAAC-C---ATT------TTACTT------TGGCAG-ACG------CATG-GCT-ACGAA--G-TAA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATATATAATTG-GTTGGA-CTGGACTC--G-ACGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAATCCCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TGC-CGA----TAC-----GAC-GA-TGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--NGAGGTCGCAC--ATGCAGACAATCAATCAAAT-AA-TT---CTAATT---TTACATTTTAA--CTTT-T-T-CCTAATTTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TAGCAC-------GGCCCGGGG-A-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TAT-ACACAAG--CCCTCACGCTTCC--TCC-GGCNATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
gi|1 : AGCG--TTCGTACT-GC--AATGGGCTGGCAAA-AATAT--TT-TTA-TT-GTGA-CCGTGCAAAGGATTTCTTACGTTCAC-TG-AGCCTCTAATAC-CCCGTA-AAAAAC-----CG--CGCATCAAAAAATCGATGCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CGACGAT-----GTAGCC-TATTTCA-CCTGTGATCTCAAA---------A-TCGCCGACAATCG-AGCCACAAAAATTAGCAAACG-ACCGAAAA--CGAGGC-A--TCTTT--C-TG--GACG-TCA-TG-A-ATGTTCTA-T-GTAGAAGA--G----AC-----------TAAGTCGGGACACGATAG---ACATGTTGTCCTGCTGTTGTTAAAACGAGTCGGTTAAATGGCG-AGTGATGG-AGA-GCGGCGGGGGGGTGGTT-C----ATC-CGATTTCAGA--ATGTAT-TA-TG-AC---AAATTCTC-TAAT-ATCCGAATGGAGGGGGGGGGGGGTCAACAACCGC--AATCTTTGT--ATGTCTGAGGGGGGCT-GAGC-TAAT-CCGGGGGGGGCGCCCAGGCTGGGGGTACTATCTT-GGTCAATTCCGTGAACC--GAGCAGCAA-GGTTAGTG-----AAAGAAACTCTT-TAA-G-CTT---TAT-AATGC------CGCGT---AGCTACCACC-G-CAGCATG-ATA-A-C-GCA-ACTAATGGTGA-A-TAG-AAAAATTTATGACTTT--G--AAATA---CATATATTTGTTTTTCTTGCAAATTGAGGATTA-ATA----AA--TCCT-ATGAATGGGTTGTT-CTGAAATAAATAATT-GA-TTT--TTCATAACGAACAGAGGAAAGTAGCCGACCTAATT--TCTT-G-AATTGCA-TGAAACCTATATCTATGGTTTGGGCGGACGTACATTT-ATTGCT-TGCGAAATTAAGACC-GTGGAAAAAATAA-T-GAAATA--ATTAACATCA-GCTTAATGAATCTATAAT-AGGTT-T--TGATTA-GG------CA------AC---CA-AT----TTCAA--AGACATTGAAGTTGTAGTAACAGACGAAGAGTTA-CTGAC-AGT-----ATTGATTAGAAAACATA-GTAGTCAGGCTTCGGTAAC-CACATCCTC-TTGTGCAGCGGGCTCGCTATATACAAA------ACA-A--ATGCACGGCATCAACTAAA--TCCC--AT-----GAATTG------------------TGTTTTGATTAGG-ATTTA----GGCCTTAA-CG-ATAAGGTGGGGGTGGGGGTTAAT-TTTGGAAT-TGA-CATA-GGCGAT---CCGA--ATTC--ATGTT--CAA-----ATT----TAGGTA-GAAAAA--AGGGTGTG--------GAGACGC---ATT------TTACTTGGGGGGGGGCAG-ACG------GATG-GTTGACGAA-----AA-A-------GC-TATCGGA----AGAGA--AATCTGAC-CCGCCATTAAG-AGCCCCTTTGCGC-TTATG---AATGG-ATTGGA-CTCGACTC--C-ACGG--C----------GTGAGGAAGAAATTGCATCTGA-TAATCCTTGAACACCAACCCTCGTCGTTCAGGAC---CAGTTG-ATAGGAAGGAA-TGC-CGACTATTAC-----AACAGA-TGTCCAGGACTGCATGTGCCAAA-GCCGTGCGTTATTGGACGT--AGA-GTCGCACTTATGCAGACAATCAATCAAACAAA-TT---CTAATT---TTACATTTTAA--CT-----------GTTTTT-AC----CTAAGTTAAAATAG-TTTACTTCGAAACATGGTTTTGACT---TAT---GACAA-CGTCG--------A-------------CAC-------GGCCTGAGGCATTTAGAGTCCATG--TATCAG---------C--GA-AC----G-GGTATAT-ACACAAAC-CCCTCACG
gi|10 : taacC-TA-TTGC--AATG------CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTCCT----TCAC-TG-AGT---TAA-A--C--GT--AAAAAA-----C---CGCATC-AAA--TCG--GCGCAGAAATA-A-C-AAG-TTT-ATT-G-A---T-CC-----AG-TAAT-----GTGGCTAT-TTTTA-CCTGT--TTTCAAA---------------T--CAATC-GAGC----AATAATAG-AAATG-ACCGGAAA--CGAGGC-ATTTTTTT--C-TG-TGACG-TCA-TGGATATG-TCTA-T-GTAGA-GC--GA-CTACTTATGGGTACTTA---TGGGAGAC-ATAG---ACA-GTT-TCT-GCT-TT-at
gi|11 : CAG--G-TAGCAC-------GAT----GA-A-T---ACCCCGTA-T-ATT-G---------A--GG-AATTAAG-G---TAC-ACACCGG--CTAGCAGGGGCCC--TTCAGGCC--TCACA-TCTACCAC-AA-A-TTAGCTCCG-CTCC-TATTT-AACTTACCTTAGGAAAACCGA-CAGGTTGAGAA
gi|12 : ttacagaaacatagaggtaatgATCCTGTG-CATTCAG---------A--AA-AT----A-----TAT-TCACAAG--CTAT-A---TTCC--TTC-GGCGCATCACA-CCTAC-TT-AGAA-TTAGCCCCG-CCCCTCATTTTA-CTTACCTGGGGAAAACCGA-T-catagattttgaaagtgaaatcatagtttt
gi|13 : gtatgaaaacgaagaggtacagcaggttacaaaggtaccTC-TA-T-GC--AGTGG------AAT-AACAT--TT-T-A-TT-GTGA-T--TGCAAAGGATTTTCC----TCAC-TG-AGT---TAA-A--T--GT--AAAAAA-----C---TGCATCAAAA--TCG--GCGCAGAAATA-A-CAAGA-GTT-ATT-G-A---T-CC-----GG-TAAT-----GTGGCT-A-TTTTA-CCTGT--TTTCAAA---------t
gi|14 : ggCCCCTT-CGC-TTATATATAAT-G-GTTGGAACTGGACTCTGG-ATGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAAT-CCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATA
gi|15 : AATCG-AGC---AAAA-ATAG-AAACG-ATTGAAAA--CAAGGC-AG-GTCTT--C-TG-TGACG-TCA-TACA-ACG-TCTC-T-GTATT-GC--GT-CTAA-----------TA---TGGGAGAC-ATGG---ACA-TTT-TCT-GCT-TT-TTAAA
gi|16 : ACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-A--CCTAAT-CC------------------GTGTGTA-TATCTT-G-TCAATTTCGTCTCTC--GAGCG---A-GGT--GTG-----AA-GAAACCTTT-Tc
gi|17 : CT-TT-TTAAA-CAA-TAG-TTAA-TGG-GGAGTGACGCCA-A-GCCT--------TGTTT-TCAAAATC-CGATT-CAGA--A-GTAT-TATTG-GCG--AA---TTC-TGAG-AAC-GAATt
gi|18 : CT-TT-TTAAA-CAA-TAG-TTAA-TGG-GGAGTGACGGCA-A-GCCT--------TGTTT-TCAA-ATCGCGATTTCAGA--A-GTAT-TATTG-GCGCAAA---TTC-TGA
gi|19 : T----TCAC-TG-AGT---TAA-AC----GTA-AAAAAA----------GCATCAAAA--TTG--GCGCAGAAATA-A-C---A-GTT-ATT-G-A---T-CC-----CA-TAAT-----GTGGCTAT-TTTT
gi|2 : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGAAC--TGCA--GGATTTTCT----TCAC-TGGAGT---TAA-AC-C--GTA-AAAAAA-----CAACCGCATCAAAAA-TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---TGCC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCAAAGC---AAAAAATAG-AA-CG-ACCGGAAA--CGAGGC-A--TTTTT--CATG-TGACGCTCAATGGA-ATGGTCTA-TCGTAGACGC--G--CTA------------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-CTG-G-AGTGATGA-A-A-GCAT--------TGTTT-C----ATC-CG--TTCAGA--A-GTAT-AA-AT-AC---AA---TTCCTAAT-ATC-GAATTA-----------GGTCAACATCCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAATGTC--------CG--------GTGTGTA--ATCTTTG-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----GA-GAAATTTTT-TGATGGCTT---TAT-AATAC------CGCGTC--AG-TAC-ACC-A--AGCCATTATA-AAC-G-A-A--AATGGT-A-A-TAG-AAAAATT-AGAACTTTTTG--AAATA---CATCTA-TTGT-----T-GCAAA-TGA-GATTA-ATA----AA--T--G-ATG-ATGGGTTGTG-A--AAATACAT--TT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T---CTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTAGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATTTGACATACAATT-ACATCAAGCTT-ATGAATTTATAAT-AGGTTGTTGTAATTA-GG------AAATAAGTACGAACAGAT----TTCAACCAGACAT-GAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTA-CACA-ATCTA--TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------T-TTTTGATTAGG-A-TAA----GGT----A-CG-ATAG--------------GTAAT-TT--GAAT-TGA-CATCCGA-GAT---TGGA--A-TC--GTGTT--CAA-----ATT-----AGGTA-GAAAA-------T-TG--------TAAAC-C---ATT------TTACTT------TGGCATCATG------CATG-GCT-ACGAA--GGTAA-ATAGCAACGC-TATCGGA----AGAGA--AAATTATT-CAGCCA-TAAG-AGCCCCTT--CGC-TTATATATAATTG-GTTGGA-CTGGACTT--GGATGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGAATAATCCCCGAAC-C--AACCCCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAAATGC-CGA----TAC------------TGTCCA-GACTG----TGC--AATACCGTGCGTTA-TGGATGTCCGAAGGTCGCAC--ATGC-GACAATCAATC-AAC-AA-TT---CTAATT---TTGCATTTTAA--CTTT-TAT-CCTAA-TTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TTGTAC-------GGCTGGGGG-A-TTAG-TCCCATG-T--TTAT---------A--GG-AC----G-G---TAT-ACACAAA--CCCTCACGCTTCC--TCC-AGCTATTCACA-CCTGC-ATGAAGA-TTGCTTCCG--TCC-CACCTAAACT--CCTGAGGTAAG-CGG-T-GGGCGAAAACCTCGGCTA
gi|20 : AGGGATTTC-GA-T-GCCAAATGG----------AATATCGTT-T-AATT-GTGA-T--TGCAAAGG-TTTTC-----TCAC-TG-A
gi|21 : taa--CGA-CTA--T--TCTT-G-AA-TG-A-TG-AAACTATATCT-TGGTTTT-AC--ACT-ACATTT-ATTG-T-TGCGAAATctattaagt
gi|23 : agTC-TA-T-GC--AATGG------AAT-AACAA--TT-T-A-TT-GTGA-T--TGCAAAGCATTTTCC----TCAC-TG-AGT---T
gi|24 : gAGGG--T-C-TA-T-GC--AATG------CAAA-AATAT--TA-T-A-TT-GTGA-C--TGCAAAGGATTtga
gi|25 : C-GAATTA-----------GGTCAACAACCGC--AATCTTATT--AGGTGTGAGG----CT-
gi|26 : TC-TA-T-GC--AATG------CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAA
gi|3 : ggTC-TA---GC--AATG------CAAA-AATAT--TTAT-A-TTTGT-A-T--GGCAAAGGATTT-CT----ACACGTG-AGT---TGA-AA-C--GTA-AAAAA------C---CACATCAAAA--TCG--GGCCGAAAATA-AGC-AGAAGTTCATG-GCAGT-T-CC-----CG-TAAT-----G-GCCA-T-TTTTA-CCCAT--TT-CAAAGAGTGCCCAA-TC--C---AATCGGAGC---GCAAAATAG-AAACG-ACCCGAAA--------------TTT--C-TGGCGACG-TCA-TGGA-ATGTTC-G-T-GTAGA-GC--GGCCTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGTT-TT-T--AAACACGTCGTTTAA-T-G-G-AGTGATGC-ACA-G-TC--------TGTTT-C----AT--CGATTTCAGA--A--TATATA--G-AC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAAC
gi|3 : ggTTTTT--ATGTCTGAGG----CTTG--C--AAT-CC------------------GTGTGT----TCGT-G-TCAACCTCGTGTTTC--G-TTG---C-AGT--GTG-----AA-GAAACTTTTTTGATG-CTT---TAT-AATAC------CGCGT---AA-TAC-ACCAG-CAG--AG-ATATA-C-G-A-A--GATGCT-A-A-TAGCAAAAATC-ATGAATTT--GACAAATA---CATCTA-TTGTTG---TCGCAAA-TGATGATTCTATA----AATCT--T-ATG-ATCGGTTTCGAAT-AA--AAAT--TT-GA-TGT--TTTAT-ACGAA-AGA-GAAAGTA--GCA-CTA--T--TCCT-GTAA-TG-A-TGAAAACTATATA--TGGCTTT-GC--ACTGACATTTAAGTG-TATGTATAAGA-AGA-CAGTG--AAAAA-AAT---A-ATA------------------ATGAATCCATAATCAGGTTGTTG-GATTACGGACACTAAG-----TACGA-CA-ATAATGTCAAAC-GGACATCGAA-TT-TAG--AGAGA--AA----TACCTGACGAGT-----ATTGA-TAGAAAA---ACGTA-T---GCTTC-GTAACAAC-ATCTAA-TTG--C----GGCTCGCTATAGAC-AA------CAA-ACTATGAAC-GTATCAACTAAAACT-CCTAATTAAAGAA--TGAGCAGCACCAGCCCGGCCTGTTTTA--TAGG-A-TAATCATGTT----ACCG-AT-A--------------TTAATGTT--GAATATGA-C-TA-GT-TAC---TCGAACA-TCCTGTGTTACCTA-----A-T----GAGGTACGAAAAA--A---T-CGATAACCGCTAAA--C---ATTTGATTCTTACTT------T---AG-ATGGTGCAACATGAGCC-ACGAA--G-Tccccccctccccccacccccccccccccccccccctccaccttttttatgtctgaggcttgcaatccgtgtgttcgtgtcaacctcgtgtttcgttgcagtgtgaagaaacttttttgatgctttataataccgcgtaatacaccagcagagatatacgaagatgctaatagcaaaaatcatgaatttgacaaatacatctattgttgtcgcaaatgatgattctataaatcttatgatcggtttcgaataaaaatttgatgttttatacgaaagagaaagtagcactattcctgtaatgatgaaaactatatatggctttgcactgacatttaagtgtatgtataagaagacagtgaaaaaaataataatgaatccataatcaggttgttggattacggacactaagtacgacaataatgtcaaacggacatcgaatttagagagaaatacctgacgagtattgatagaaaaacgtatgcttcgtaacaacatctaattgcggctcgctatagacaacaaactatgaacgtatcaactaaaactcctaattaaagaatgagcagcaccagcccggcctgttttataggataatcatgttaccgatattaatgttgaatatgactagttactcgaacatcctgtgttacctaatgaggtacgaaaaaatcgataaccgctaaacatttgattcttactttagatggtgcaacatgagccacgaagtta
gi|4 : ggtctagcaatgcaaaaatatttatatttgtatggcaaaggatttctacacgtgagttgaaacgtaaaaaaccacatcaaaatcgggccgaaaataagcagaagttcatggcagttcccgtaatggccatttttacccatttcaaagagtgcccaatccaatcggagcgcaaaatagaaacgacccgaaatttctggcgacgtcatggaatgttcgtgtagagcggcctactatgggagacatagacagtttctggtttttaaacacgtcgtttaatggagtgatgcacagtctgtttcatcgatttcagaatatatagacaattctaatatcgaattaggtcaacccccccctccccccacccccccccccccccccccctccacctT--G--AAATA---CATACA-TTGT-----T-GCAA--TGAAGATTA-ATA----AA--T--T-ATG-A--GGTTGTG-AT-AAATAA-T--TT-GATTTT--TTTATA-CGAA-AGA-GAAAG----CGA-CTA--T--TCTT-G-AA-TG-A-TGAAA-CTATATTA-TGGTTTTG-C--ACTA-CATTT-ATTG-T-TGCGAAATA-AGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAAT-TATAAT-AGGTTGTTGTGATTA-GG------AA-----TA-------AT----TCCAAC-AGACATTGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTATTCTAGTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA--TCTAAATTGT-C----GGCTCGCTA-ATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TTA----GGT----A-CG-ATAG--------------GTAAT-TT--GAAT-TGA-CATA-GG-GAT----CAA--A-TC--GTGTT--CAA-----ATT----TAGGTA-GAAAAA--G---T--G--------TAA---C---ATT------TTACTT------TG-CAA----------CATG-GCT-ACGAA--------A-------GC-TATCGGA----AGAGA--AA-TTA-C-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATA----AT-G-GATGGA-CTGCA--------------TGGACTCTAGATGAGGAAGAAATTGCATCTGA-TAATCCT-GAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TCG-CTA----TACAATCAGAT-GAATGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--CGAGGTCGCAC--ATGCAGACAATCAATCAAAT-AAATT---CTAATT---TTACATTTTAA--CTGT-T-TACCTAATT-----------------AAAAT-GTTTTACTTC--AACAT--TTTTGACT---TAT---GACA--CGTCG--------A-------------CAC-------GGCCTGGGG-A-TTAGATCCCATG-TTATCAG-------------G-AC----G-G---TAT-ACACAAAAACCCTCACGCTTCCC-TCC-AGCTATTCACA-CCAGC-AC-AA-A-TTGGCTCCG-CCCC-CACCTAAACTTAta
gi|5 : gG--CTC-TA-T-GC--AATGT-----CAAATAATAT--T----A-TT-GTGA-C--TGCAAAGGAATT-CT----TCAC-TG-A-T---TAA-ACAC--GTAGAAAAAA-----G---CCCATCAAAG--TCGA-GCGCAGAAATACA-C-ATA-GAT-AATAG-AGTGT-CCAAACGTG-TAATCAGTGGTGGTT-T-TTTTAGCTTGT--TTCCAAA---------AATC-------ATCG-AGC---AAAAA-TAG-AAACGCACCAGAAAAACGAGGC-A--TTTTTTTC-TG-TGACG--CA-TGGA-ATGTTCTAAT-GTAGG-GCCGG--CTAC-----------TA---TGG-AGAC-ATAAGACACA-GTT-TCTGCTT-TT-TTAAAATAGTTCG-TTAA-TGG---AGTGA-GA-A-ACGCTA--------TGTTTTC----ATCACGATTTAAAGCTA-GCAT-CA-AGAGC---A----TTC-TAATTAT--GAATTA-----------GGTCAACAACCGCTCAATCTTTTTTAATGT-TGAGG----CTAG--C-TAAT-CT--------CG---------TGTGTA-TAT-TC-G-TCAATTTCTTGTCTCTTGAGCG---ACAGT--GTGTCCGAAA-GAAACCTTT-TGTTG-CATCGCTATTAATACACTCATCCCGTGCGAG--AT-AAC-GACAGCAAT-AGA-A-TAG-ATA--AATGGT-ATACTAG-AAAATTA-ATGACTT---G--AAACATGACATTAA-TTAT-----T--------GA-TATTA-ATATATGAA--T--TTATG-A--GGTTGTG-AT-AACGAGATCATTTAATTTTCTTTTATA-CGAA-AGATGAAAGTAGACGA-CTA--TATTCTTTG-AA-TG-AATGAAA-CTATATAT-GGGTTTTGGC--ACTATCATTTCATTG-T-T----AATAGATAGT-ATA--AAAAAAAATac
gi|6 : gtAAA---A-ATA-T--GACGTT-GTAGCATA--TCT---TTTCTC----GGCTCACC-TA-ACAAATCTTTACAACA--ATACAC-GCGTGAATTAAA--T-CC--AT-----TA--TG------------------TGTTTTGATTAGATA-TAT----AGT------CGCATAA--------------TTAA---T--GAATCTAATCACA-GG-GAGGCATCGA--A-TC--GTGTT--TGATATGTATTACGGTAGG-A-GAAAAAATA---T-TG--------TAAGC-CATAATT------TTACTT--------GCAG-A---------ATG-GCT-ACGGATTG-TAACG-------GCGCAACGCATTCGAGAGACTGAACCATCACCGCAA-TAAGCAGCACTTTT-CGCGCT---TATAATTGAATGGGA-CTGGACT-----------CTAGATCCT-GATGATCA------TG-ATCT-----ATCTC--ACC-C--TACCTCGTCG-TCAGGACAGAC-G-TGAATAGGAGTGAA-TGCGCGA----CGT-----GA---A-TTTCCA-GACTGT-TGTGC---A-ACCGTGaa
gi|6 : ATAATCAAT---AT-AT-TC---CTGATAAAATTATATAAAAA--ATTT-T-T-GCTAATTTTTTACAATTATACATT----TA-TTTTACCTT--AACAC--TTTTGAC-------------AA-CGTCGTAG-----AA-ATAG-AGGTAGCAC-------GATCCGGGA-A-ATAAATCCCGTC-TTATCA----------A--GA-A-----A-G---TAT-GC---------------------------GCAATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCT-TACTTAAACTTACCTAAGGTAAACCAGTT-TGTCAAAAAGCTCGGCtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatataatcaatatattcctgataaaattatataaaaaatttttgctaattttttacaattatacatttattttaccttaacacttttgacaacgtcgtagaaatagaggtagcacgatccgggaaataaatcccgtcttatcaagaaagtatgcgcaattcacacctgcataagattggctccgcccttacttaaacttacctaaggtaaaccagtttgtcaaaaagctcggccttt
gi|7 : aaaaatatgacgttgtagcatatcttttctcggctcacctaacaaatctttacaacaatacacgcgtgaattaaatccattatgtgttttgattagatatatagtcgcataattaatgaatctaatcacagggaggcatcgaatcgtgtttgatatgtattacggtaggagaaaaaatattgtaagccataattttacttgcagaatggctacggattgtaacggcgcaacgcattcgagagactgaaccatcaccgcaataagcagcacttttcgcgcttataattgaatgggactggactctagatcctgatgatcatgatctatctcaccctacctcgtcgtcaggacagacgtgaataggagtgaatgcgcgacgtgaatttccagactgttgtgcaaccgtgtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatTC-TA-T-GC--AATAG-----AAAG-AATAT--TT-C-A-TT-GTGA-T--TGCAAAAGATTTTCT----TCAC-TA-AGT---TCA-AT----GTA-AAAAAAACCCAC---CGCATAACAA--TCG--GAGCAGAAACT-G-C-AGA-GTT-ATC-G-A---G-CC-----CG-CAAT-----GTGGCT-A-TTTTA-CCTGT--TCTCAAA---------A-T---C--CAATC-GAGC-----AAAATAG-AAACT-TCCGAAAA--TGAGGCTG--GTCTG--A-TG-TGACG-TCA-CAGT-ATA-TCTC-T-GTAGA-ACG-G--CTAG-----------TA---TGGGAGAC-AGAG---ACA-GTT-TC-GGCT-TT-TT-GAAC-AGTAG-TTAA-T-G-G-AGTGACAC-A-A-GCTT--------TGTTT-C----ATC-CGA-TTCGGA--A-GTAT-T--CG-GC---AA---TTC-TAAT-ACC-GAATTA-----------GGcttt
gi|8 : gAGATAATTA-TGAAAT----TTTGACTACTT---TTACAGCAAAA--CACT-C-T-CCT--TTTTT-TTAAT-ATATATT----T-GTTTTACTTC--AA-AT--ATTTGACTACATAT----ACAATCGTTGAAGATATAAA-ATAGCAG-TAACACAGTAACAGGCCCAGGG-A-TTAGATTCCGTGATTATCAGCGTGTTATCA--GG-AC----G-G---TATAACACAA---CTCTC-CACTGCCCTTCC-AGCAATTCACACCCTGC-AT-TATATTTAGCTCCA-CCCC-CATATAAACTTACCTGAGGTAAACCGG-G-GGTCGAAAAATCCGGg
gi|9 : ttttggattagaatagtacaatTGTGC--AG-ACTGTGCGTTA-TGGATG------AGTTGCAC--A----GACAATGAATCATTT-TA-TT---TTT-TT---TTACAT---AAATCTTTCT-T-CCTAATTTTT-ATAATTATATATTTA--TA-TTTTACTTT--AACAT--TTTTGACT---TATAATGACAA-CGTTG--------AGTACAG--G-TAACAC-------AGCTCGGGT-A---AGATCCCGTG-TTATCAG---------AAAGGTAC----ATG---TAT-ACACAAG--CTCTCAC-CCTCC--CCC-GGCAATTCACA-CCTGC-GT-AAGA-TTGGCTCCGCCCCC-CACCTAAACTTACCTGAGGTAAACTGG-TGGGTCG-AAACCTCGGCTAtctttaaacaatagaattaccct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AATATGCTGAAGGGAGGGGGGGGGGGACAAACAACCAAAAATCAATATCTGTATGTATGA
Alignments
lowQualScore : 11 2222222 22222 2222222222 11 11 111 11111 11111 111 4444444444444444444 22 1111 11111 1 1 33333333333333333333 111 111 1 111 1111 2222222222 222222 1 222222222222 111 33333333333 11 1111 1111 666666666666666666 111 11 11111 11 22222 1 111 1 222222 222 11 1 1111 11111 222222222222 11111 1 11 111111 111 4444444 11 2 1111 1111111 11 1111 33 1 11 11 1 11 1 111 11 1 1 111 11 111 222222 1 1 1 1 7777777777777777777777777777 11 1 1 1 11 2222 1 1 33333 1 111 11 11 222 2222222 222222 11 11 11 66666666666666666666666666666 1111 222222 444444444444444 11 1 1111 11 11 11 2222222222222 44444444444444444444444444444 222222 6666666666666666666666 6666666666666666 1 2222 11 111 1 1 111 1 55555555555 1 11 111 1 1 6666666666666666666 1 11 11111 1 2222222 11 1111 111 111 111 1111111 1111111 2222222 111 1111 6666666666666666666666 1111111 111 333333333333333333333333333 111 11 1 111
lowQualScore : 11 3 3 3 55 5555555 3 55 3 3 3 3 5555 5 8888 4 4 777 5 44444 88 5555555555 11 11 5 5 5 5 5 5 5 555 5 22222 5 22222 222 5 77 0 8888888888888888888 00 7777 1 5 5 77 77777 77 5 55 5 5 0 5 5 5 5 1 66666666666666666666 000 5 000 5 5 88 4 4 0 5 0 7 0 1 5 7 444 4 4444 5 2222222222 222222 1 1 77 5 000000000000 000 5 6 5 11111111111 11 99 2 4444 7777 88 8 888888888888888888 444 8 8 11 0 77777 11 00000 8 8 3 0 777 0 888888 777 33 0 6666 44444 000000000000 22222 0 11 222222 444 1 8 5555555 33 4 8 7777 6666666 8 55 2222 66 0 66 8 0 11 11 8 6 0 88 6 99999 6 6 6 6 6 1 111 00 99 99 3 6 6 3 777 11 6 444 8 111111 0 0 6 0 2 3 3 0 0000000000000000000000000000 22 0 0 0 9 33 0000 0 0 66666 0 444 8 8 11 8 3 0 88 444 1111111 11 5 0 333333 8 11 8 11 8 11 11111111111111111111111111111 0 8 8 1 7777 555555 8 0 777777777777777 88 11 6 8 0 8 8 7777 11 8 11 11 4 5555555555555 0 8 88888888888888888888888888888 333333 6666666666666666666666 8 8 0000000000000000 0 1111 33 9 333 0 0 88 8 0 111 5 8 8 55555555555 0 5 6 1 8 3 8 11 8 444 0 8 8 0 0 5555555555555555555 0 55 33333 0 5555555 33 3 5 55 6666 111 3 111 333 99 3333333 3 3333333 1 5555555 99 99 111 4444 6 0000000000000000000000 8888888 33 5 888 000 222222222222222222222222222 5 777 1 7777 33 66 22 5 5 5 0 5 5 5 0 1 777 0 1
lowQualScore : .. . . . .. ....... . .. . . . . .... . .... . . ... . ..... .. .......... .. .. . . . . . . . ... . ..... . ..... ... . .. . ................... .. .... . . . .. ..... .. . .. . . . . . . . . .................... ... . ... . . .. . . . . . . . . . . ... . .... . .......... ...... . . .. . ............ ... . . . ........... .. .. . .... .... .. . .................. ... . . .. . ..... .. ..... . . . . ... . ...... ... .. . .... ..... ............ ..... . .. ...... ... . . ....... .. . . .... ....... . .. .... .. . .. . . .. .. . . . .. . ..... . . . . . . ... .. .. .. . . . . ... .. . ... . ...... . . . . . . . . ............................ .. . . . . .. .... . . ..... . ... . . .. . . . .. ... ....... .. . . ...... . .. . .. . .. ............................. . . . . .... ...... . . ............... .. .. . . . . . .... .. . .. .. . ............. . . ............................. ...... ...................... . . ................ . .... .. . ... . . .. . . ... . . . ........... . . . . . . . .. . ... . . . . . ................... . .. ..... . ....... .. . . .. .... ... . ... ... .. ....... . ....... . ....... .. .. ... .... . ...................... ....... .. . ... ... ........................... . ... . .... .. .. .. . . . . . . . . . ... . .
lowQualScore : 00 6 6 6 00 5555555 6 00 6 6 6 6 9999 2 5555 0 0 888 0 00000 22 8888888888 99 99 0 0 0 0 0 0 0 666 0 55555 0 55555 555 7 99 1 0000000000000000000 33 1111 7 7 7 99 11111 99 7 99 7 7 7 7 4 7 7 4 99999999999999999999 000 7 000 7 7 00 4 4 1 0 1 9 7 4 7 9 333 0 9999 7 0000000000 444444 4 4 99 7 444444444444 000 7 7 7 77777777777 00 22 5 2222 5555 88 0 000000000000000000 444 0 0 00 8 88888 00 00000 0 0 2 0 555 0 888888 555 22 0 5555 00000 888888888888 00000 0 22 888888 000 0 0 4444444 66 0 0 0000 8888888 0 66 6666 22 8 44 0 6 00 44 0 0 8 33 7 33333 7 7 7 7 7 3 222 33 22 55 3 7 7 2 222 00 0 111 8 000000 0 0 5 0 5 2 2 0 5555555555555555555555555555 55 5 0 0 8 88 0000 0 0 88888 0 000 0 0 00 0 8 8 66 444 2222222 66 6 8 000000 0 00 0 00 0 00 22222222222222222222222222222 8 0 0 4 0000 888888 0 8 666666666666666 88 00 0 0 8 0 0 8888 00 0 00 00 6 4444444444444 8 0 00000000000000000000000000000 000000 0000000000000000000000 0 0 8888888888888888 0 2222 88 8 888 0 0 88 0 8 888 4 0 0 00000000000 8 6 4 4 0 2 0 00 0 000 8 0 0 0 0 5555555555555555555 0 88 88888 0 2222222 88 2 6 77 2222 777 2 777 333 22 2222222 2 8888888 8 8888888 22 22 777 2222 7 6666666666666666666666 6666666 44 7 999 555 111111111111111111111111111 0 222 1 8888 66 11 44 7 7 7 1 7 7 7 4 7 555 8 0
consensus : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTTCT----TCAC-TG-AGT---TAA-AC-C--GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GC--G--CTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGG-G-AGTGACGN-A-A-GCNT--------TGTTT-C----ATC-CGATTTCAGA--A-GTAT-TA-NG-GC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT-CC--------CG--------GTGTGTA-TATCTT-G-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----AA-GAAACTTTT-TGATG-CTT---TAT-AATAC------CGCGT---AG-TAC-ACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAATT-ATGACTTT--G--AAATA---CATNTA-TTGTT----T-GCAAA-TGA-GATTA-ATA----AA--T--T-ATG-ATGGGTTGTG-AT-AAATAAAT-ATT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T--TCTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTGGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA-CA-AT----TCCAAC-AGACATCGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA-ATCTAA-TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TAA----GGT----A-CG-ATAA--------------TTAAT-TT--GAAT-TGA-CATA-GG-GAT---TCGA--A-TC--GTGTT--CGA-----ATT----TAGGTA-GAAAAA--A---T-TG--------TAAAC-C---ATT------TTACTT------TGGCAG-ACG------CATG-GCT-ACGAA--G-TAA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATATATAATTG-GTTGGA-CTGGACTC--G-ACGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAATCCCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TGC-CGA----TAC-----GAC-GA-TGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--NGAGGTCGCAC--ATGCAGACAATCAATCAAAT-AA-TT---CTAATT---TTACATTTTAA--CTTT-T-T-CCTAATTTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TAGCAC-------GGCCCGGGG-A-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TAT-ACACAAG--CCCTCACGCTTCC--TCC-GGCNATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
Reference ( family-4295 ) : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTTCT----TCAC-TG-AGT---TAA-AC-C--GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GC--G--CTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGG-G-AGTGACGN-A-A-GCNT--------TGTTT-C----ATC-CGATTTCAGA--A-GTAT-TA-NG-GC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT-CC--------CG--------GTGTGTA-TATCTT-G-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----AA-GAAACTTTT-TGATG-CTT---TAT-AATAC------CGCGT---AG-TAC-ACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAATT-ATGACTTT--G--AAATA---CATNTA-TTGT-----TTGCAAA-TGA-GATTA-ATA----AA--T--T-ATG-ATGGGTTGTG-AT-AAATAAAT-ATT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T--TCTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTGGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA-CA-AT----TCCAAC-AGACATCGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA-ATCTAA-TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TAA----GGT----A-CG-ATAA--------------TTAAT-TT--GAAT-TGA-CATA-GG-GAT---TCGA--A-TC--GTGTT--CGA-----ATT----TAGGTA-GAAAAA--A---T-TG--------TAAAC-C---ATT------TTACTT------TGGCAG-ACG------CATG-GCT-ACGAA--G-TAA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATATATAATTG-GTTGGA-CTGGACTC--G-ACGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAATCCCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TGC-CGA----TAC-----GAC-GA-TGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--NGAGGTCGCAC--ATGCAGACAATCAATCAAAT-AA-TT---CTAATT---TTACATTTTAA--CTTT-T-T-CCTAATTTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TAGCAC-------GGCCCGGGG-A-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TAT-ACACAAG--CCCTCACGCTTCC--TCC-GGCNATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
gi|1 : AGCG--TTCGTACT-GC--AATGGGCTGGCAAA-AATAT--TT-TTA-TT-GTGA-CCGTGCAAAGGATTTCTTACGTTCAC-TG-AGCCTCTAATAC-CCCGTA-AAAAAC-----CG--CGCATCAAAAAATCGATGCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CGACGAT-----GTAGCC-TATTTCA-CCTGTGATCTCAAA---------A-TCGCCGACAATCG-AGCCACAAAAATTAGCAAACG-ACCGAAAA--CGAGGC-A--TCTTT--C-TG--GACG-TCA-TG-A-ATGTTCTA-T-GTAGAAGA--G----AC-----------TAAGTCGGGACACGATAG---ACATGTTGTCCTGCTGTTGTTAAAACGAGTCGGTTAAATGGCG-AGTGATGG-AGA-GCGGCGGGGGGGTGGTT-C----ATC-CGATTTCAGA--ATGTAT-TA-TG-AC---AAATTCTC-TAAT-ATCCGAATGGAGGGGGGGGGGGGTCAACAACCGC--AATCTTTGT--ATGTCTGAGGGGGGCT-GAGC-TAAT-CCGGGGGGGGCGCCCAGGCTGGGGGTACTATCTT-GGTCAATTCCGTGAACC--GAGCAGCAA-GGTTAGTG-----AAAGAAACTCTT-TAA-G-CTT---TAT-AATGC------CGCGT---AGCTACCACC-G-CAGCATG-ATA-A-C-GCA-ACTAATGGTGA-A-TAG-AAAAATTTATGACTTT--G--AAATA---CATATATTTGTTTTTCTTGCAAATTGAGGATTA-ATA----AA--TCCT-ATGAATGGGTTGTT-CTGAAATAAATAATT-GA-TTT--TTCATAACGAACAGAGGAAAGTAGCCGACCTAATT--TCTT-G-AATTGCA-TGAAACCTATATCTATGGTTTGGGCGGACGTACATTT-ATTGCT-TGCGAAATTAAGACC-GTGGAAAAAATAA-T-GAAATA--ATTAACATCA-GCTTAATGAATCTATAAT-AGGTT-T--TGATTA-GG------CA------AC---CA-AT----TTCAA--AGACATTGAAGTTGTAGTAACAGACGAAGAGTTA-CTGAC-AGT-----ATTGATTAGAAAACATA-GTAGTCAGGCTTCGGTAAC-CACATCCTC-TTGTGCAGCGGGCTCGCTATATACAAA------ACA-A--ATGCACGGCATCAACTAAA--TCCC--AT-----GAATTG------------------TGTTTTGATTAGG-ATTTA----GGCCTTAA-CG-ATAAGGTGGGGGTGGGGGTTAAT-TTTGGAAT-TGA-CATA-GGCGAT---CCGA--ATTC--ATGTT--CAA-----ATT----TAGGTA-GAAAAA--AGGGTGTG--------GAGACGC---ATT------TTACTTGGGGGGGGGCAG-ACG------GATG-GTTGACGAA-----AA-A-------GC-TATCGGA----AGAGA--AATCTGAC-CCGCCATTAAG-AGCCCCTTTGCGC-TTATG---AATGG-ATTGGA-CTCGACTC--C-ACGG--C----------GTGAGGAAGAAATTGCATCTGA-TAATCCTTGAACACCAACCCTCGTCGTTCAGGAC---CAGTTG-ATAGGAAGGAA-TGC-CGACTATTAC-----AACAGA-TGTCCAGGACTGCATGTGCCAAA-GCCGTGCGTTATTGGACGT--AGA-GTCGCACTTATGCAGACAATCAATCAAACAAA-TT---CTAATT---TTACATTTTAA--CT-----------GTTTTT-AC----CTAAGTTAAAATAG-TTTACTTCGAAACATGGTTTTGACT---TAT---GACAA-CGTCG--------A-------------CAC-------GGCCTGAGGCATTTAGAGTCCATG--TATCAG---------C--GA-AC----G-GGTATAT-ACACAAAC-CCCTCACG
gi|10 : taacC-TA-TTGC--AATG------CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTCCT----TCAC-TG-AGT---TAA-A--C--GT--AAAAAA-----C---CGCATC-AAA--TCG--GCGCAGAAATA-A-C-AAG-TTT-ATT-G-A---T-CC-----AG-TAAT-----GTGGCTAT-TTTTA-CCTGT--TTTCAAA---------------T--CAATC-GAGC----AATAATAG-AAATG-ACCGGAAA--CGAGGC-ATTTTTTT--C-TG-TGACG-TCA-TGGATATG-TCTA-T-GTAGA-GC--GA-CTACTTATGGGTACTTA---TGGGAGAC-ATAG---ACA-GTT-TCT-GCT-TT-at
gi|11 : CAG--G-TAGCAC-------GAT----GA-A-T---ACCCCGTA-T-ATT-G---------A--GG-AATTAAG-G---TAC-ACACCGG--CTAGCAGGGGCCC--TTCAGGCC--TCACA-TCTACCAC-AA-A-TTAGCTCCG-CTCC-TATTT-AACTTACCTTAGGAAAACCGA-CAGGTTGAGAA
gi|12 : ttacagaaacatagaggtaatgATCCTGTG-CATTCAG---------A--AA-AT----A-----TAT-TCACAAG--CTAT-A---TTCC--TTC-GGCGCATCACA-CCTAC-TT-AGAA-TTAGCCCCG-CCCCTCATTTTA-CTTACCTGGGGAAAACCGA-T-catagattttgaaagtgaaatcatagtttt
gi|13 : gtatgaaaacgaagaggtacagcaggttacaaaggtaccTC-TA-T-GC--AGTGG------AAT-AACAT--TT-T-A-TT-GTGA-T--TGCAAAGGATTTTCC----TCAC-TG-AGT---TAA-A--T--GT--AAAAAA-----C---TGCATCAAAA--TCG--GCGCAGAAATA-A-CAAGA-GTT-ATT-G-A---T-CC-----GG-TAAT-----GTGGCT-A-TTTTA-CCTGT--TTTCAAA---------t
gi|14 : ggCCCCTT-CGC-TTATATATAAT-G-GTTGGAACTGGACTCTGG-ATGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAAT-CCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATA
gi|15 : AATCG-AGC---AAAA-ATAG-AAACG-ATTGAAAA--CAAGGC-AG-GTCTT--C-TG-TGACG-TCA-TACA-ACG-TCTC-T-GTATT-GC--GT-CTAA-----------TA---TGGGAGAC-ATGG---ACA-TTT-TCT-GCT-TT-TTAAA
gi|16 : ACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-A--CCTAAT-CC------------------GTGTGTA-TATCTT-G-TCAATTTCGTCTCTC--GAGCG---A-GGT--GTG-----AA-GAAACCTTT-Tc
gi|17 : CT-TT-TTAAA-CAA-TAG-TTAA-TGG-GGAGTGACGCCA-A-GCCT--------TGTTT-TCAAAATC-CGATT-CAGA--A-GTAT-TATTG-GCG--AA---TTC-TGAG-AAC-GAATt
gi|18 : CT-TT-TTAAA-CAA-TAG-TTAA-TGG-GGAGTGACGGCA-A-GCCT--------TGTTT-TCAA-ATCGCGATTTCAGA--A-GTAT-TATTG-GCGCAAA---TTC-TGA
gi|19 : T----TCAC-TG-AGT---TAA-AC----GTA-AAAAAA----------GCATCAAAA--TTG--GCGCAGAAATA-A-C---A-GTT-ATT-G-A---T-CC-----CA-TAAT-----GTGGCTAT-TTTT
gi|2 : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGAAC--TGCA--GGATTTTCT----TCAC-TGGAGT---TAA-AC-C--GTA-AAAAAA-----CAACCGCATCAAAAA-TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---TGCC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCAAAGC---AAAAAATAG-AA-CG-ACCGGAAA--CGAGGC-A--TTTTT--CATG-TGACGCTCAATGGA-ATGGTCTA-TCGTAGACGC--G--CTA------------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-CTG-G-AGTGATGA-A-A-GCAT--------TGTTT-C----ATC-CG--TTCAGA--A-GTAT-AA-AT-AC---AA---TTCCTAAT-ATC-GAATTA-----------GGTCAACATCCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAATGTC--------CG--------GTGTGTA--ATCTTTG-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----GA-GAAATTTTT-TGATGGCTT---TAT-AATAC------CGCGTC--AG-TAC-ACC-A--AGCCATTATA-AAC-G-A-A--AATGGT-A-A-TAG-AAAAATT-AGAACTTTTTG--AAATA---CATCTA-TTGT-----T-GCAAA-TGA-GATTA-ATA----AA--T--G-ATG-ATGGGTTGTG-A--AAATACAT--TT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T---CTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTAGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATTTGACATACAATT-ACATCAAGCTT-ATGAATTTATAAT-AGGTTGTTGTAATTA-GG------AAATAAGTACGAACAGAT----TTCAACCAGACAT-GAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTA-CACA-ATCTA--TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------T-TTTTGATTAGG-A-TAA----GGT----A-CG-ATAG--------------GTAAT-TT--GAAT-TGA-CATCCGA-GAT---TGGA--A-TC--GTGTT--CAA-----ATT-----AGGTA-GAAAA-------T-TG--------TAAAC-C---ATT------TTACTT------TGGCATCATG------CATG-GCT-ACGAA--GGTAA-ATAGCAACGC-TATCGGA----AGAGA--AAATTATT-CAGCCA-TAAG-AGCCCCTT--CGC-TTATATATAATTG-GTTGGA-CTGGACTT--GGATGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGAATAATCCCCGAAC-C--AACCCCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAAATGC-CGA----TAC------------TGTCCA-GACTG----TGC--AATACCGTGCGTTA-TGGATGTCCGAAGGTCGCAC--ATGC-GACAATCAATC-AAC-AA-TT---CTAATT---TTGCATTTTAA--CTTT-TAT-CCTAA-TTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TTGTAC-------GGCTGGGGG-A-TTAG-TCCCATG-T--TTAT---------A--GG-AC----G-G---TAT-ACACAAA--CCCTCACGCTTCC--TCC-AGCTATTCACA-CCTGC-ATGAAGA-TTGCTTCCG--TCC-CACCTAAACT--CCTGAGGTAAG-CGG-T-GGGCGAAAACCTCGGCTA
gi|20 : AGGGATTTC-GA-T-GCCAAATGG----------AATATCGTT-T-AATT-GTGA-T--TGCAAAGG-TTTTC-----TCAC-TG-A
gi|21 : taa--CGA-CTA--T--TCTT-G-AA-TG-A-TG-AAACTATATCT-TGGTTTT-AC--ACT-ACATTT-ATTG-T-TGCGAAATctattaagt
gi|23 : agTC-TA-T-GC--AATGG------AAT-AACAA--TT-T-A-TT-GTGA-T--TGCAAAGCATTTTCC----TCAC-TG-AGT---T
gi|24 : gAGGG--T-C-TA-T-GC--AATG------CAAA-AATAT--TA-T-A-TT-GTGA-C--TGCAAAGGATTtga
gi|25 : C-GAATTA-----------GGTCAACAACCGC--AATCTTATT--AGGTGTGAGG----CT-
gi|26 : TC-TA-T-GC--AATG------CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAA
gi|3 : ggTC-TA---GC--AATG------CAAA-AATAT--TTAT-A-TTTGT-A-T--GGCAAAGGATTT-CT----ACACGTG-AGT---TGA-AA-C--GTA-AAAAA------C---CACATCAAAA--TCG--GGCCGAAAATA-AGC-AGAAGTTCATG-GCAGT-T-CC-----CG-TAAT-----G-GCCA-T-TTTTA-CCCAT--TT-CAAAGAGTGCCCAA-TC--C---AATCGGAGC---GCAAAATAG-AAACG-ACCCGAAA--------------TTT--C-TGGCGACG-TCA-TGGA-ATGTTC-G-T-GTAGA-GC--GGCCTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGTT-TT-T--AAACACGTCGTTTAA-T-G-G-AGTGATGC-ACA-G-TC--------TGTTT-C----AT--CGATTTCAGA--A--TATATA--G-AC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAAC
gi|3 : ggTTTTT--ATGTCTGAGG----CTTG--C--AAT-CC------------------GTGTGT----TCGT-G-TCAACCTCGTGTTTC--G-TTG---C-AGT--GTG-----AA-GAAACTTTTTTGATG-CTT---TAT-AATAC------CGCGT---AA-TAC-ACCAG-CAG--AG-ATATA-C-G-A-A--GATGCT-A-A-TAGCAAAAATC-ATGAATTT--GACAAATA---CATCTA-TTGTTG---TCGCAAA-TGATGATTCTATA----AATCT--T-ATG-ATCGGTTTCGAAT-AA--AAAT--TT-GA-TGT--TTTAT-ACGAA-AGA-GAAAGTA--GCA-CTA--T--TCCT-GTAA-TG-A-TGAAAACTATATA--TGGCTTT-GC--ACTGACATTTAAGTG-TATGTATAAGA-AGA-CAGTG--AAAAA-AAT---A-ATA------------------ATGAATCCATAATCAGGTTGTTG-GATTACGGACACTAAG-----TACGA-CA-ATAATGTCAAAC-GGACATCGAA-TT-TAG--AGAGA--AA----TACCTGACGAGT-----ATTGA-TAGAAAA---ACGTA-T---GCTTC-GTAACAAC-ATCTAA-TTG--C----GGCTCGCTATAGAC-AA------CAA-ACTATGAAC-GTATCAACTAAAACT-CCTAATTAAAGAA--TGAGCAGCACCAGCCCGGCCTGTTTTA--TAGG-A-TAATCATGTT----ACCG-AT-A--------------TTAATGTT--GAATATGA-C-TA-GT-TAC---TCGAACA-TCCTGTGTTACCTA-----A-T----GAGGTACGAAAAA--A---T-CGATAACCGCTAAA--C---ATTTGATTCTTACTT------T---AG-ATGGTGCAACATGAGCC-ACGAA--G-Tccccccctccccccacccccccccccccccccccctccaccttttttatgtctgaggcttgcaatccgtgtgttcgtgtcaacctcgtgtttcgttgcagtgtgaagaaacttttttgatgctttataataccgcgtaatacaccagcagagatatacgaagatgctaatagcaaaaatcatgaatttgacaaatacatctattgttgtcgcaaatgatgattctataaatcttatgatcggtttcgaataaaaatttgatgttttatacgaaagagaaagtagcactattcctgtaatgatgaaaactatatatggctttgcactgacatttaagtgtatgtataagaagacagtgaaaaaaataataatgaatccataatcaggttgttggattacggacactaagtacgacaataatgtcaaacggacatcgaatttagagagaaatacctgacgagtattgatagaaaaacgtatgcttcgtaacaacatctaattgcggctcgctatagacaacaaactatgaacgtatcaactaaaactcctaattaaagaatgagcagcaccagcccggcctgttttataggataatcatgttaccgatattaatgttgaatatgactagttactcgaacatcctgtgttacctaatgaggtacgaaaaaatcgataaccgctaaacatttgattcttactttagatggtgcaacatgagccacgaagtta
gi|4 : ggtctagcaatgcaaaaatatttatatttgtatggcaaaggatttctacacgtgagttgaaacgtaaaaaaccacatcaaaatcgggccgaaaataagcagaagttcatggcagttcccgtaatggccatttttacccatttcaaagagtgcccaatccaatcggagcgcaaaatagaaacgacccgaaatttctggcgacgtcatggaatgttcgtgtagagcggcctactatgggagacatagacagtttctggtttttaaacacgtcgtttaatggagtgatgcacagtctgtttcatcgatttcagaatatatagacaattctaatatcgaattaggtcaacccccccctccccccacccccccccccccccccccctccacctT--G--AAATA---CATACA-TTGT-----T-GCAA--TGAAGATTA-ATA----AA--T--T-ATG-A--GGTTGTG-AT-AAATAA-T--TT-GATTTT--TTTATA-CGAA-AGA-GAAAG----CGA-CTA--T--TCTT-G-AA-TG-A-TGAAA-CTATATTA-TGGTTTTG-C--ACTA-CATTT-ATTG-T-TGCGAAATA-AGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAAT-TATAAT-AGGTTGTTGTGATTA-GG------AA-----TA-------AT----TCCAAC-AGACATTGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTATTCTAGTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA--TCTAAATTGT-C----GGCTCGCTA-ATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TTA----GGT----A-CG-ATAG--------------GTAAT-TT--GAAT-TGA-CATA-GG-GAT----CAA--A-TC--GTGTT--CAA-----ATT----TAGGTA-GAAAAA--G---T--G--------TAA---C---ATT------TTACTT------TG-CAA----------CATG-GCT-ACGAA--------A-------GC-TATCGGA----AGAGA--AA-TTA-C-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATA----AT-G-GATGGA-CTGCA--------------TGGACTCTAGATGAGGAAGAAATTGCATCTGA-TAATCCT-GAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TCG-CTA----TACAATCAGAT-GAATGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--CGAGGTCGCAC--ATGCAGACAATCAATCAAAT-AAATT---CTAATT---TTACATTTTAA--CTGT-T-TACCTAATT-----------------AAAAT-GTTTTACTTC--AACAT--TTTTGACT---TAT---GACA--CGTCG--------A-------------CAC-------GGCCTGGGG-A-TTAGATCCCATG-TTATCAG-------------G-AC----G-G---TAT-ACACAAAAACCCTCACGCTTCCC-TCC-AGCTATTCACA-CCAGC-AC-AA-A-TTGGCTCCG-CCCC-CACCTAAACTTAta
gi|5 : gG--CTC-TA-T-GC--AATGT-----CAAATAATAT--T----A-TT-GTGA-C--TGCAAAGGAATT-CT----TCAC-TG-A-T---TAA-ACAC--GTAGAAAAAA-----G---CCCATCAAAG--TCGA-GCGCAGAAATACA-C-ATA-GAT-AATAG-AGTGT-CCAAACGTG-TAATCAGTGGTGGTT-T-TTTTAGCTTGT--TTCCAAA---------AATC-------ATCG-AGC---AAAAA-TAG-AAACGCACCAGAAAAACGAGGC-A--TTTTTTTC-TG-TGACG--CA-TGGA-ATGTTCTAAT-GTAGG-GCCGG--CTAC-----------TA---TGG-AGAC-ATAAGACACA-GTT-TCTGCTT-TT-TTAAAATAGTTCG-TTAA-TGG---AGTGA-GA-A-ACGCTA--------TGTTTTC----ATCACGATTTAAAGCTA-GCAT-CA-AGAGC---A----TTC-TAATTAT--GAATTA-----------GGTCAACAACCGCTCAATCTTTTTTAATGT-TGAGG----CTAG--C-TAAT-CT--------CG---------TGTGTA-TAT-TC-G-TCAATTTCTTGTCTCTTGAGCG---ACAGT--GTGTCCGAAA-GAAACCTTT-TGTTG-CATCGCTATTAATACACTCATCCCGTGCGAG--AT-AAC-GACAGCAAT-AGA-A-TAG-ATA--AATGGT-ATACTAG-AAAATTA-ATGACTT---G--AAACATGACATTAA-TTAT-----T--------GA-TATTA-ATATATGAA--T--TTATG-A--GGTTGTG-AT-AACGAGATCATTTAATTTTCTTTTATA-CGAA-AGATGAAAGTAGACGA-CTA--TATTCTTTG-AA-TG-AATGAAA-CTATATAT-GGGTTTTGGC--ACTATCATTTCATTG-T-T----AATAGATAGT-ATA--AAAAAAAATac
gi|6 : gtAAA---A-ATA-T--GACGTT-GTAGCATA--TCT---TTTCTC----GGCTCACC-TA-ACAAATCTTTACAACA--ATACAC-GCGTGAATTAAA--T-CC--AT-----TA--TG------------------TGTTTTGATTAGATA-TAT----AGT------CGCATAA--------------TTAA---T--GAATCTAATCACA-GG-GAGGCATCGA--A-TC--GTGTT--TGATATGTATTACGGTAGG-A-GAAAAAATA---T-TG--------TAAGC-CATAATT------TTACTT--------GCAG-A---------ATG-GCT-ACGGATTG-TAACG-------GCGCAACGCATTCGAGAGACTGAACCATCACCGCAA-TAAGCAGCACTTTT-CGCGCT---TATAATTGAATGGGA-CTGGACT-----------CTAGATCCT-GATGATCA------TG-ATCT-----ATCTC--ACC-C--TACCTCGTCG-TCAGGACAGAC-G-TGAATAGGAGTGAA-TGCGCGA----CGT-----GA---A-TTTCCA-GACTGT-TGTGC---A-ACCGTGaa
gi|6 : ATAATCAAT---AT-AT-TC---CTGATAAAATTATATAAAAA--ATTT-T-T-GCTAATTTTTTACAATTATACATT----TA-TTTTACCTT--AACAC--TTTTGAC-------------AA-CGTCGTAG-----AA-ATAG-AGGTAGCAC-------GATCCGGGA-A-ATAAATCCCGTC-TTATCA----------A--GA-A-----A-G---TAT-GC---------------------------GCAATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCT-TACTTAAACTTACCTAAGGTAAACCAGTT-TGTCAAAAAGCTCGGCtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatataatcaatatattcctgataaaattatataaaaaatttttgctaattttttacaattatacatttattttaccttaacacttttgacaacgtcgtagaaatagaggtagcacgatccgggaaataaatcccgtcttatcaagaaagtatgcgcaattcacacctgcataagattggctccgcccttacttaaacttacctaaggtaaaccagtttgtcaaaaagctcggccttt
gi|7 : aaaaatatgacgttgtagcatatcttttctcggctcacctaacaaatctttacaacaatacacgcgtgaattaaatccattatgtgttttgattagatatatagtcgcataattaatgaatctaatcacagggaggcatcgaatcgtgtttgatatgtattacggtaggagaaaaaatattgtaagccataattttacttgcagaatggctacggattgtaacggcgcaacgcattcgagagactgaaccatcaccgcaataagcagcacttttcgcgcttataattgaatgggactggactctagatcctgatgatcatgatctatctcaccctacctcgtcgtcaggacagacgtgaataggagtgaatgcgcgacgtgaatttccagactgttgtgcaaccgtgtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatTC-TA-T-GC--AATAG-----AAAG-AATAT--TT-C-A-TT-GTGA-T--TGCAAAAGATTTTCT----TCAC-TA-AGT---TCA-AT----GTA-AAAAAAACCCAC---CGCATAACAA--TCG--GAGCAGAAACT-G-C-AGA-GTT-ATC-G-A---G-CC-----CG-CAAT-----GTGGCT-A-TTTTA-CCTGT--TCTCAAA---------A-T---C--CAATC-GAGC-----AAAATAG-AAACT-TCCGAAAA--TGAGGCTG--GTCTG--A-TG-TGACG-TCA-CAGT-ATA-TCTC-T-GTAGA-ACG-G--CTAG-----------TA---TGGGAGAC-AGAG---ACA-GTT-TC-GGCT-TT-TT-GAAC-AGTAG-TTAA-T-G-G-AGTGACAC-A-A-GCTT--------TGTTT-C----ATC-CGA-TTCGGA--A-GTAT-T--CG-GC---AA---TTC-TAAT-ACC-GAATTA-----------GGcttt
gi|8 : gAGATAATTA-TGAAAT----TTTGACTACTT---TTACAGCAAAA--CACT-C-T-CCT--TTTTT-TTAAT-ATATATT----T-GTTTTACTTC--AA-AT--ATTTGACTACATAT----ACAATCGTTGAAGATATAAA-ATAGCAG-TAACACAGTAACAGGCCCAGGG-A-TTAGATTCCGTGATTATCAGCGTGTTATCA--GG-AC----G-G---TATAACACAA---CTCTC-CACTGCCCTTCC-AGCAATTCACACCCTGC-AT-TATATTTAGCTCCA-CCCC-CATATAAACTTACCTGAGGTAAACCGG-G-GGTCGAAAAATCCGGg
gi|9 : ttttggattagaatagtacaatTGTGC--AG-ACTGTGCGTTA-TGGATG------AGTTGCAC--A----GACAATGAATCATTT-TA-TT---TTT-TT---TTACAT---AAATCTTTCT-T-CCTAATTTTT-ATAATTATATATTTA--TA-TTTTACTTT--AACAT--TTTTGACT---TATAATGACAA-CGTTG--------AGTACAG--G-TAACAC-------AGCTCGGGT-A---AGATCCCGTG-TTATCAG---------AAAGGTAC----ATG---TAT-ACACAAG--CTCTCAC-CCTCC--CCC-GGCAATTCACA-CCTGC-GT-AAGA-TTGGCTCCGCCCCC-CACCTAAACTTACCTGAGGTAAACTGG-TGGGTCG-AAACCTCGGCTAtctttaaacaatagaattaccct
blockSeqs : AT . . T CA GC T CG A . A T AC C . G G . . CAC AG AACCCAC A A C G A A C A C GTG G AAACG . CAGTG AT G . GAGTGCCCAATCC AA A A . C AA ATTT TT A GC C A T G A C C GACTACTTATGGGTACT . . GAC . . TG . . A G T . G GG C CCA C CT TCAAA G T CT . TATTGGCGCA . C T . . TC TA C . TG CT G CG AT T . TT AC . TCCGA . T T G CGC T ACTCAT GCG T . AGC CCATT ATAGATA ATAC C T TTTG TGA C . TGTC A T T TATG TCTT . TG AAT AT CA T T CT AA . T GA . TAT T T . . A A CT AG . AA A . A G CA . T TTT C CAATT A . T C G T T C ACACTAAGTACGACAATAATG CC C . . A . G C G ATTCT . . C . . . A A AAA TTC AT T TCTTTA C CT . AC . TA TAAAGAATGAGCAGCACCAGCCCGGCC T . A TCAT AC C G TG . A T C . GCAT AC . CT AC A TATGTATTACGGT C AATCGATAACCGCTAAAC TGATTC TAGATGGTGCAA A . GGTAAATAGCAAC G TTCG CT A TCA . C T G TAT T A A CTGGATGGAA A G G A C . . . AGA . A A G TACAATCAGATGAA . CA AAT . TCCGAAG . T A CA AAA TGA A AAA TTT AT TTTAT A TACAATT T AAAATAG . . ACA AATG T AAGATATAAAATAGCAGTAA AGTAACA TG . TT ATT CGTGTTATCAGGACGG A AAA T ACGC CT G GC C . G A T C T T TT G
blockSeqs : . . . . . TC . . . . . . C T . . . . . CC A ACAAC . . . . . . . . . GT . . . . AT . . ATCCC GG A A . . . AGG . . T . . . T . . . GGCCTAC . . . . . TG . . A G . . G GG C GCA . CT TCAA A T . . TATTGGCG . . . . . . . C . AG T . CG AT . . . A . . . . T . . . . C T . GAC CAAT AACGAA AA . C TGAC . C . T A A . . TTT . TC AT AT . . T . A . . . . T . . . . . A CT GG . GA C . . G GT . T TT C ATT . . C . G T T . AAATAAGTACGAACAGAT C T . . A . G . . A . . . . . . A A AA CTC AT G . . . . . . . AATG . . A . A . T T . C . . . T . . . . T ATTT . AATATTGTAAGCCATA . TGGCATCATG . . TTGTAACG . . . A TT . . T . TAT T . . TGGATGGAA A G G . C . . . . . . . . CGTGAA . T AA . TCGAG . T A GA AA . A . TTT . GTTTA A ACAATT C AAAATG . . . G . TAGAAATAGAGGTAG . CT . TT CA AGGAATTAAGG . G T ACGC C A TA . . . G . . . A TG A
blockSeqs : . . . . . GA . . . . . . T T . . . . . AC A AC . . . . . . . . . . . . . . A . . AATC G G A . . . TGG . . T . . . T . . . CGGCTAC . . . . . TG . . A T . . T G T CAC . AT TC . T . . CAAGAGC . . . . . . . G . A T . . A . . . A . . . . T . . . . . . . A AG TACGAA AA . A TG . A . T . . . . TG . . AT CG . . T . A . . . . T . . . . . A TA A . AT . . . . C . A T . . . . . . G T . . AATAAT C . . . . . . . . . . . . . . . G . A TC A T . . . . . . . AATG . . T . A . G T . . . . . T . . . . A ATT . TTGTAAACC . TGCAA . . A . . . . C . . T . TAT . . . . A A A . . . . . . . . . . TAC . . AG . A . . . CA AT . A . AAA . TTCTT A ATAATT T TATA . . . G . AAACAGAGTTG . CC . AT TT AAAGGTACATG . G C CAC . A TA . . . G . . . A T C
blockSeqs : . . . . . C . . . . . . T T . . . . . C A AC . . . . . . . . . . . . . . T . . ATCC G A A . . . AT . . T . . . . . . . GTCTAA . . . . . T . . A G . . G G T AA . TC C . T . . AAATAC . . . . . . . C . G . . . . . . . C . . . . G . T . T . . . . TT . . A . . . . . A . . . . T . . . . . . AT G . A . . . . C . . . . . . . . . . C T . . . . . . . . TATG . . A . . . T . . . . . . . . . . . G ATG . AGTGTAAC . GCAGA . . . . . . . . . . . . . . . . . . . . A . C TA . C . CAA . TTTT A TTAAT T TA . . . . . AGTACAGGTAA . CC . TT TT AGGACGG . A C ACC . A AA . . . T . . . A T
blockSeqs : . . . . G . . . . . . T T . . . . . T A AG . . . . . . . . . . . . . . T . . TC G . A . . . AT . . T . . . . . . . GGCTAG . . . . . T . . . . . . . G C AA . TA C . . . . ATAGAC . . . . . . . . . . T . . . . . . A G . A . . . . . . . . . . CTCT . . . TG . . . . . A . TC . T TT AAAATA . G T A . G AA . . . G . . . A G
blockSeqs : . . . . G . . . . . . C T . . . . . C . A . . . . . . . . . . . . . . T . . G . . . . . . . . T . . . . . . . GCTA . . . . . G . . . . . . . . . CA . TT C . . . . TCGGC . . . . . . . T AGAAAG . . T . . . AA . . . . . . . A
blockSeqs : . . . . G . . . . . . C . . . . . . T . C . . . . . . . . . . . . . . A . . T GACGG . . .
blockSeqs : . . . . C . . . . . . T . . . . . . .
blockSeqs : . . . . C . . . . . . C . . .
blockSeqs : . . . . C . . . . . . T
blockSeqCons : C****** C*** **** *** C**** AC******** ** ** T** ** ATCC*************** A*** T* GGCTAN************** *** GG* CA** TT******** *** *********** **** G*** ****************** A** A**** ** TG**** T****** ** TCT**** T* AT** ** A* ** T**** CT* G* ** ** *** ** ** A** CC***** AATG************************* A***** N************** ** ATTT********* TGCAA***************** T* TAT *********** ** AA*** AA** TTTTT** ACAATT* ATG**** ** ** AAATAGAGGTAA********** TT* TT* AGGACGG******************** G** ACC* A* NA T**
originalCons : AGGG--TTC-TA-T-GC--AATGG-----CAAA-AATAT--TT-T-A-TT-GTGA-C--TGCAAAGGATTTTCT----TCAC-TG-AGT---TAA-AC-C--GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC--C--CAATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GC--G--CTAC-----------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGG-G-AGTGACGN-A-A-GCNT--------TGTTT-C----ATC-CGATTTCAGA--A-GTAT-TA-NG-GC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT-CC--------CG--------GTGTGTA-TATCTT-G-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----AA-GAAACTTTT-TGATG-CTT---TAT-AATAC------CGCGT---AG-TAC-ACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAATT-ATGACTTT--G--AAATA---CATNTA-TTGTT----T-GCAAA-TGA-GATTA-ATA----AA--T--T-ATG-ATGGGTTGTG-AT-AAATAAAT-ATT-GATTTT--TTTATAACGAA-AGA-GAAAGTA--CGA-CTA--T--TCTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTGGC--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA-CA-AT----TCCAAC-AGACATCGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA-ATCTAA-TTGTTC----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--AT-----AA--TG------------------TGTTTTGATTAGG-A-TAA----GGT----A-CG-ATAA--------------TTAAT-TT--GAAT-TGA-CATA-GG-GAT---TCGA--A-TC--GTGTT--CGA-----ATT----TAGGTA-GAAAAA--A---T-TG--------TAAAC-C---ATT------TTACTT------TGGCAG-ACG------CATG-GCT-ACGAA--G-TAA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATATATAATTG-GTTGGA-CTGGACTC--G-ACGGAACTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAATCCCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TGC-CGA----TAC-----GAC-GA-TGTCCA-GACTGCATGTGC--AA-ACCGTGCGTTA-TGGACGT--NGAGGTCGCAC--ATGCAGACAATCAATCAAAT-AA-TT---CTAATT---TTACATTTTAA--CTTT-T-T-CCTAATTTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG--------AA-ACAG-AG-TAGCAC-------GGCCCGGGG-A-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TAT-ACACAAG--CCCTCACGCTTCC--TCC-GGCNATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
finalCons : AGGG--TTC-TA-T-GC--AATGC------AAA-AATAT--TT-T-A-TT-GTGAC---TGCAAAGGATTTTCT----TCAC-TG-AGT---TAA-AC----GTA-AAAAAAC--------CGCATCAAAA--TCG--GCGCAGAAATA-A-C-AGA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCTT--TTTTA-CCTGT--TTTCAAAATCC---------------AATCGGAGCA---AAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TGT-GACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GCGGCTAN--------------TA---TGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGGGG-AGTGACGCA--A-GCTT--------TGTTT-C----ATC-CGATTTCAGA--A-GTAT-TA-NG-GC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGAGG----CTG---C-TAAT-CC------------------GTGTGTA--ATCTT-G-TCAATTTCGTGTCTC--GAGCGA----GGT--GTG-----AA-GAAACTTTT-TGATG-CTT---TAT-AATAC------CGCGT---AG-TAC-ACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAATT-ATGACTTTG----AAATA---CATNTA-TTGTT------GCAA--TGA-GATTA-ATA----AATCT----ATG-AT-GGTTGTGAT--AAATAAAT--TT-GATTTT--TTTATA-CGAA-AGA-GAAAGTA--CGA-CTAT----TCTT-G-AA-TG-A-TGAAAACTATATCT-TGGTTTTG-C--ACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-GACATA--ATT-ACATCA-GCTT-ATGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA-CA-AT----TCCAAC-AGACATCGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGA-TAGAAAA---A-GTA-T--GGCTTC-GTAACACA--TCTA--TTGCC-----GGCTCGCTATATACAAA------CAA-A--ATGCAC-GCATCAACTAAA--T-CC--ATAATG-------------------------TGTTTTGATTAGG-A-TAA----GGTA-----CG-ATAAN--------------TAAT-TT--GAAT-TGA-CATA-GG-GAT---TCGA--A-TC--GTGTT--CGAATTT---------AGGTA-GAAAAA--A---T-TG--------TAAAC-C---ATT------TTACTTTGCAA-----------------CATG-GCT-ACGAA--G-TAA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCA-TAAG-AGCCCCTTT-CGC-TTATATATAATTG-GTTGGA-CTGGACT-----------CTGGACTCTAGATGAGGAGGAGATTGCATCTGA-TAATCCCCGAAC-C--ACCCTCGTCG-TCAGGAC---CAG-TG-ATAGGAGGGAA-TGC-CGA----TAC-----GAC-GA-TGTCCA-GACTGCATGTGCAA---ACCGTGCGTTA-TGGACGT--NGAGGTCGCAC--ATGCAGACAATCAATCAAATAA--TT---CTAATT---TTACATTTTAA--CTTTTTT--CCTAATTTTTACAATT-ATATATTATG----TTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCGAAATAGAGGTAA----------CAC-------GGCCCGGGG-ATT-AGATCCCGTGTT-ATCAGAGGACGG--------------------TAT-ACACAAG--CCCTCACC-TTCC--TCCA-GCNATTCACA-CCTGC-AT-AAGA-TTGGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGGT--GGTCGAAAANCTCGGCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AATATGCTGAAGGGAGGGGGGGGGGGACAAACAACCAAAAATCAATATCTGTATGTATGA
Alignments
lowQualScore : 11 111111 222 3333333333 11 11 111 11111 11111 111 33333333333333333333 22 1111 11111 1 1 11 333333333333 111 1 1 2222222222 222222 1 222222222222 111 33333333333 11 1111 1111 11 666666666666666666666666 11 11111 11 22222 1 111 1 222222 222 11 1 1111 11111 222222222222 11111 1 11 111111 111 4444444444444444444444 1111 222 222 1 1111 222 11 11 1 111 11111 1 1 111 11 22 1111111 1 1 1 1 7777777777777777777777777777 11 1 1 1 11 2222 1 1 222222 1 111 11 1 2222 333333 222222 11 11 666666666666666666666666666666666 3333333333333333 444444444444444 11 1 1111 11 11 11 222222222222 4444444444444444444444444444 222222 555555555555555555555555555 666666666666666 1 2222 11 111 1 1 111 222 55555555555555555555555 111 1 11 111 1 1 6666666666666666666 1 11111 1 22222 11 111 111 11 11 11111111 22222222 111 1111 5555555555555555555555555 1111111111 11 111 22222222222222222222222222222 2222222222 1 111
lowQualScore : 11 3 3 3 55 3 777777 3 444 3 5555 5 8888 4 4 777 4 5 000 5 1111111111 11 11 5 5 5 5 5 5 5 555 5 22222 5 22222 222 5 77 0 77777777777777777777 00 7777 1 5 5 77 77777 77 5 55 5 5 0 5 5 5 5 1 5 11 333333333333 5 000 5 5 88 4 4 0 5 0 7 0 1 5 7 11 99 66 1 5 3333333333 222222 1 8 77 5 000000000000 000 5 6 5 11111111111 11 99 2 4444 7777 88 11 8 8 333333333333333333333333 8 8 11 0 77777 11 00000 8 8 3 0 777 0 888888 777 33 0 6666 44444 000000000000 22222 0 11 222222 444 1 8 4444444444444444444444 8 7777 555 666 6 2222 66 0 555 0 11 8 0 8 8 8 8 0 88 6 99999 6 6 6 6 6 9 111 88888 99 3 6 6 3 777 11 6 55 8 8888888 0 0 6 0 2 55 0 0000000000000000000000000000 22 0 0 0 9 33 0000 0 0 777777 0 444 8 8 11 8 0 6 8 8 0000 777777 11 5 0 333333 8 11 8 11 222222222222222222222222222222222 0 8 0000000000000000 8 0 888888888888888 88 11 6 8 0 8 8 7777 11 8 11 11 4 999999999999 0 8 0 2222222222222222222222222222 333333 0 444444444444444444444444444 8 8 000000000000000 0 1111 33 9 333 0 0 3 8 8 0 111 333 11 8 11111111111111111111111 111 8 6 1 8 3 11 8 8 444 0 8 8 0 0 5555555555555555555 0 3 99 33333 0 11111 2 33 3 5 0 0 777 444 5 555 11 6 00 77777777 3 88888888 6 99 99 111 4444 6 1111111111111111111111111 8888888888 5 44 000 88888888888888888888888888888 5 66 777777 7777777777 5 5 22 5 5 5 0 5 5 5 0 1 777 0 1
lowQualScore : .. . . . .. . ...... . ... . .... . .... . . ... . . ... . .......... .. .. . . . . . . . ... . ..... . ..... ... . .. . .................... .. .... . . . .. ..... .. . .. . . . . . . . . . .. ............ . ... . . .. . . . . . . . . . . .. .. .. . . .......... ...... . . .. . ............ ... . . . ........... .. .. . .... .... .. .. . . ........................ . . .. . ..... .. ..... . . . . ... . ...... ... .. . .... ..... ............ ..... . .. ...... ... . . ...................... . .... ... ... . .... .. . ... . .. . . . . . . . .. . ..... . . . . . . ... ..... .. . . . . ... .. . .. . ....... . . . . . .. . ............................ .. . . . . .. .... . . ...... . ... . . .. . . . . . .... ...... .. . . ...... . .. . .. ................................. . . ................ . . ............... .. .. . . . . . .... .. . .. .. . ............ . . . ............................ ...... . ........................... . . ............... . .... .. . ... . . . . . . ... ... .. . ....................... ... . . . . . .. . . ... . . . . . ................... . . .. ..... . ..... . .. . . . . ... ... . ... .. . .. ........ . ........ . .. .. ... .... . ......................... .......... . .. ... ............................. . .. ...... .......... . . .. . . . . . . . . . ... . .
lowQualScore : 00 6 6 6 00 6 777777 6 222 6 9999 2 5555 0 0 888 4 0 666 0 9999999999 99 99 0 0 0 0 0 0 0 666 0 55555 0 55555 555 7 99 1 11111111111111111111 33 1111 7 7 7 99 11111 99 7 99 7 7 7 7 4 7 7 4 7 00 777777777777 7 000 7 7 00 4 4 1 0 1 9 7 4 7 9 44 77 44 4 7 4444444444 444444 4 4 99 7 444444444444 000 7 7 7 77777777777 00 22 5 2222 5555 88 00 0 0 888888888888888888888888 0 0 00 8 88888 00 00000 0 0 2 0 555 0 888888 555 22 0 5555 00000 888888888888 00000 0 22 888888 000 0 0 8888888888888888888888 0 0000 000 666 0 6666 22 8 000 8 00 0 8 0 0 0 0 8 33 7 33333 7 7 7 7 7 5 222 55555 55 3 7 7 2 222 00 0 55 8 0000000 0 0 5 0 5 88 0 5555555555555555555555555555 55 5 0 0 8 88 0000 0 0 888888 0 000 0 0 00 0 8 0 0 0 0000 666666 66 6 8 000000 0 00 0 00 222222222222222222222222222222222 8 0 6666666666666666 0 8 000000000000000 88 00 0 0 8 0 0 8888 00 0 00 00 6 666666666666 8 0 8 4444444444444444444444444444 000000 8 888888888888888888888888888 0 0 888888888888888 0 2222 88 8 888 0 0 8 0 0 8 888 444 66 0 00000000000000000000000 888 0 4 4 0 2 00 0 0 000 8 0 0 0 0 5555555555555555555 0 2 55 88888 0 88888 5 88 2 6 8 8 888 000 6 888 00 7 22 22222222 2 55555555 7 22 22 777 2222 7 4444444444444444444444444 7777777777 7 44 555 66666666666666666666666666666 0 99 999999 9999999999 7 7 44 7 7 7 1 7 7 7 4 7 555 8 0
consensus : AGGG--TTC-TA-T-GC--AAT-G------CAAA-AATATTT-T-ATT-GTGA-C--TGCAAAGGATTTTCT----TCAC-TG-AGT---T-AA-AC---GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-CA-GA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC-----C-AATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GC-GG-CTA-----------NTATGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGGGGAGTGAC-G-CA-A-GCNT--------TGTTT-C----ATC-CGATTTCAGA--A-GTAT-TA-NG-GC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT--C-CG-TG--------------TG----TAT-ATCTT-G-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----AA-GAAACTTTT-TGATG-CTT---TAT-AATAC------CGCGT---AG-TAC-ACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAATT-ATGACTTT--G--AAATA---CATNTATT-GTT------GC----AAA-TGA-G-ATTA-ATA----AATC-TATGA-T-GGGTTGTG-AT-AAATAAAT-A-TTGATTTT--TT-TATA-CGAA-AGA-G-AAAGTA--CGAC-TA--T--TCTT-G-AAT-G-A-TGAAA-CTATATCT-TGGTTT---T-GCACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-GACATA--ATTA-CATCA-GCTTA-TGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA-CA-AT----TCCAAC-AGACATCGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGAT-AGAAAA---A-GTA-T--GGCTTCG-TAAC-AC-ATC-T-A--TTGT----TCGGCTCGCTATATACAAA------CAA-A--ATGCACG-CATCAACTAAA--TCC--AT-----AA--TG------------------TGTTTTGATTAGG-ATA-A----GGT----A-CG-ATAAG--------------TAAT-TT--GAAT-TGA-CAT-AGG-GAT---TCGA--AT-C--GTGTT--CGA-----ATT----TAGGTA-GAAAAA--AT--TG--------T--AAAC-C---ATT------TTACTT-------T-G-------CA----AC--ATG-GCT-ACGAA--GTAA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCAT-AAG-AGCCCCTTT-CGC-TTATATATAATTG-GTTGGA-CTGGACT---------CTGG----------ACTCTA--G-ATGAGGAGGAGATTGCATCTG-ATAATCCCCGAAC--CA-CCCTCGTCGT-CAGGAC---CAGT-G-ATAGGAGGG-AATGC-CGA----TAC-----GAC-GA-TGTCCAG-ACTGCATGTGC--AA-ACCGTGCGTTAT-GGACGT--NGAGGTCGCAC--ATGCAGACAATCAATCAAATAAATT---CTAATTTTACATTTTAA--CT-TTTTT-CCTAATTTTT-ACAATTATATATT---AT-GTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG---AA--------ATAGAGGTAA--CAC-------G--GCCCGGGG-A-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TATA-CAC--AAG-CCCTCA----C-CTT-CCT-CCGG-CNATTCACACC-TGC-AT-AAGATT-GGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
Reference ( family-4295 ) : AGGG--TTC-TA-T-GC--AAT-G------CAAA-AATATTT-T-ATT-GTGA-C--TGCAAAGGATTTTCT----TCAC-TG-AGT---T-AA-AC---GTA-AAAAAA-----C---CGCATCAAAA--TCG--GCGCAGAAATA-A-CA-GA-GTT-ATT-G-A---T-CC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC-----C-AATCGGAGC---AAAAAATAG-AAACG-ACCGGAAA--CGAGGC-A--TTTTT--C-TG-TGACG-TCA-TGGA-ATGTTCTA-T-GTAGA-GC-GG-CTA-----------NTATGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-TGGGGAGTGAC-G-CA-A-GCTT--------TGTTT-C----ATC-CGATTTCAGA--A-GTAT-TA-NG-GC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAAT--C-CG-TG--------------TG----TA--ATCTT-G-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----AA-GAAACTTTT-TGATG-CTT---TAT-AATAC------CGCGT---AG-TAC-ACC-G-CAGCAAN-ATA-A-C-G-A-A--AATGGT-A-A-TAG-AAAAATT-ATGACTTT--G--AAATA---CATNTATT-GTT------GC----AA--TGA-G-ATTA-ATA----AATC-TATGA-T-GG-TTGTG-AT-AAATAAAT---TTGATTTT--TT-TATA-CGAA-AGA-G-AAAGTA--CGAC-TA--T--TCTT-G-AAT-G-A-TGAAAACTATATCT-TGGTTT---T-GCACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATT-GACATA--ATTA-CATCA-GCTTA-TGAATCTATAAT-AGGTTGTTGTGATTA-GG------AA-----TACGA-CA-AT----TCCAAC-AGACATCGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGAT-AGAAAA---A-GTA-T--GGCTTCG-TAAC-AC-ATC-T-A--TTG-----CCGGCTCGCTATATACAAA------CAA-A--ATGCACG-CATCAACTAAA--TCC--AT-----AA--TG------------------TGTTTTGATTAGG-ATA-A----GGT----A-CG-ATAAN--------------TAAT-TT--GAAT-TGA-CAT-AGG-GAT---TCGA--AT-C--GTGTT--CGA-----ATT----TAGGTA-GAAAAA--AT--TG--------T--AAAC-C---ATT------TTACTT-------T-G-------CA----AC--ATG-GCT-ACGAA--GTAA-A-------GC-TATCGGA----AGAGA--AAACTATC-CCGCCAT-AAG-AGCCCCTTT-CGC-TTATATATAATTG-GTTGGA-CTGGACT---------CTGG----------ACTCTA--G-ATGAGGAGGAGATTGCATCTG-ATAATCCCCGAAC--CA-CCCTCGTCGT-CAGGAC---CAGT-G-ATAGGAGGG-AATGC-CGA----TAC-----GAC-GA-TGTCCAG-ACTGCATGTGC--AA-ACCGTGCGTTAT-GGACGT--NGAGGTCGCAC--ATGCAGACAATCAATCAAATAA-TT---CTAATTTTACATTTTAA--CT-TTTTT-CCTAATTTTT-ACAATTATATATT---AT-GTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG---AA--------ATAGAGGTAA--CAC-------G--GCCCGGGG-A-TTAGATCCCGTG-TTATCAG---------A--GG-AC----G-G---TATA-CAC--AAG-CCCTCA----C-CTT-CCT-CCAG-CNATTCACACC-TGC-AT-AAGATT-GGCTCCG-CCCC-CACCTAAACTTACCTGAGGTAAACCGG-T-GGTCGAAAANCTCGGCTA
gi|1 : AGCG--TTCGTACT-GC--AAT-GGGCTGGCAAA-AATATTT-TTATT-GTGA-CCGTGCAAAGGATTTCTTACGTTCAC-TG-AGCCTCT-AATACCCCGTA-AAAAAC-----CG--CGCATCAAAAAATCGATGCGCAGAAATA-A-CA-GA-GTT-ATT-G-A---T-CC-----CGACGAT-----GTAGCC-TATTTCA-CCTGTGATCTCAAA---------A-TCGCCGAC-AATCG-AGCCACAAAAATTAGCAAACG-ACCGAAAA--CGAGGC-A--TCTTT--C-TG--GACG-TCA-TG-A-ATGTTCTA-T-GTAGAAGA-GA-CTA-----------AGTCGGGACACGATAG---ACATGTTGTCCTGCTGTTGTTAAAACGAGTCGGTTAAATGGCGAGTGAT-G-GAGA-GCGGCGGGGGGGTGGTT-C----ATC-CGATTTCAGA--ATGTAT-TA-TG-AC---AAATTCTC-TAAT-ATCCGAATGGAGGGGGGGGGGGGTCAACAACCGC--AATCTTTGT--ATGTCTGAGGGGGGCT-GAGC-TAAT--C-CG-GGGGGGGCGCCCAGGCTGGGGGTACTATCTT-GGTCAATTCCGTGAACC--GAGCAGCAA-GGTTAGTG-----AAAGAAACTCTT-TAA-G-CTT---TAT-AATGC------CGCGT---AGCTACCACC-G-CAGCATG-ATA-A-C-GCA-ACTAATGGTGA-A-TAG-AAAAATTTATGACTTT--G--AAATA---CATATATTTGTTTTTCTTGC----AAATTGA-GGATTA-ATA----AATCCTATGAAT-GGGTTGTT-CTGAAATAAATAA-TTGATTTT--TCATA-A-CGAACAGA-GGAAAGTAGCCGACCTAATT--TCTT-G-AATTGCA-TGAAACCTATATCTATGGTTTGGGC-GGACGTACATTT-ATTGCT-TGCGAAATTAAGA-CCGTGGAAAAAATAAT--GAAATA--ATTAACATCA-GCTTAATGAATCTATAAT-AGGTT--T-TGATTA-GG------CA------AC---CA-AT----TTCAA--AGACATTGAAGTTGTAGTAACAGACGAAGAGTTA-CTGAC-AGTA-----TTGATTAGAAAACATA-GTAGTCAGGCTTCGGTAACCAC-ATCCT-C--TTGTGCAGCGGGCTCGCTATATACAAA------ACA-A--ATGCACGGCATCAACTAAA--TCCC-AT-----GAATTG------------------TGTTTTGATTAGG-ATTTA----GGCCTTAA-CG-ATAAGGTGGGGGTGGGGGTTAAT-TTTGGAAT-TGA-CAT-AGGCGAT---CCGA--ATTC--ATGTT--CAA-----ATT----TAGGTA-GAAAAA--AGGGTG--------TGGAGACGC---ATT------TTACTT-------G-GGGGGGGGCAG---ACGGATG-GTTGACGAA----AA-A-------GC-TATCGGA----AGAGA--AATCTGAC-CCGCCATTAAG-AGCCCCTTTGCGC-TTATG---AAT------GGA-TTGGACT---------C--G----------ACTCCACGGCGTGAGGAAGAAATTGCATCTG-ATAATCCTTGAACACCAACCCTCGTCGTTCAGGAC---CAGTTG-ATAGGAAGG-AATGC-CGACTATTAC-----AACAGA-TGTCCAGGACTGCATGTGCCAAA-GCCGTGCGTTATTGGACGT--AGAG-TCGCACTTATGCAGACAATCAATCAAACAAATT---CTAATTTTACATTTTAA--CTGTTTTTACCTAA---------GTTAAA-------AT-AGTTTACTTCGAAACATGGTTTTGACT---TAT---GACAA-CGTCG----------------------A--CAC-------G--GCCTGAGGCATTTAGAGTCCATG--TATCAG---------C--GA-AC----G-GGTATATA-CAC--AAACCCCTCA----C-
gi|10 : taacC-TA-TTGC--AAT-G------CAAA-AATATTT-T-ATT-GTGA-C--TGCAAAGGATTTCCT----TCAC-TG-AGT---T-AA-AC---GT--AAAAAA-----C---CGCATC-AAA--TCG--GCGCAGAAATA-A-CA-AG-TTT-ATT-G-A---T-CC-----AG-TAAT-----GTGGCTAT-TTTTA-CCTGT--TTTCAAA------------T-----C-AATC-GAGC----AATAATAG-AAATG-ACCGGAAA--CGAGGC-ATTTTTTT--C-TG-TGACG-TCA-TGGATATG-TCTA-T-GTAGA-GC-GA-CTACTTATGGGTACTTATGGGAGAC-ATAG---ACA-GTT-TCT-GCT-TT-gat
gi|11 : --------ATAGAGGTAATGCAG-------GTAGCACGATG-A---ATACCCCGTA-T-ATT-G---------A--GG-AATTAAG-G---TACA-CAC--CGG-CTAGCAGGGGC-C----CT-TCAGGCC--TCACATC-TACCAC-AA-ATT-AGCTCCG-CTCC-TATTT-AACTTACCTTAGGAAAACCGA-CAGGTTGAGAA
gi|12 : ttacagaaacATCCTGTG-CATTCAG---------A--AA-AT----A-----TATT-CAC--AAG-CT---A----T-ATT-CCT-TCGG-CGCATCACACC-TAC-TT-AGAATT-AGCCCCG-CCCCTCATTTTA-CTTACCTGGGGAAAACCGA-T-catagattttgaaagtgaaatcatagtttt
gi|13 : gtatgaaaacgaagaggtacagcaggttacaaaggtaccTC-TA-T-GC--AGT-G------GAAT-AACATTT-T-ATT-GTGA-T--TGCAAAGGATTTTCC----TCAC-TG-AGT---T-AA-AT---GTA-AAAAA------C---TGCATCAAAA--TCG--GCGCAGAAATA-A-CAAGA-GTT-ATT-G-A---T-CC-----GG-TAAT-----GTGGCT-A-TTTTA-CCTGT--TTTCAAA---------t
gi|14 : ggCCCCTT-CGC-TTATATATAAT-G-GTTGGAACTGGACT---------CTGGATGGAACTGGACTCTA--G-ATGAGGAGGAGATTGCATCTG-ATAAT-CCCGAAC--CA-CCCTCGTCGT-CAGGAC---CAGT-G-ATA
gi|15 : -AATCG-AGC---AAAA-ATAG-AAACG-ATTGAAAA--CAAGGC-AG-GTCTT--C-TG-TGACG-TCA-TACA-ACG-TCTC-T-GTATT-GC-GT-CTA-----------ATATGGGAGAC-ATGG---ACA-TTT-TCT-GCT-TT-TTAAA
gi|16 : ACAACCGC--AATCTTTTT--ATGTCTGAGG----CT-A--CCTAAT--C-CG-TG--------------TG----TAT-ATCTT-G-TCAATTTCGTCTCTC--GAGCG---A-GGT--GTG-----AA-GAAACCTTT-Tc
gi|17 : CT-TT-TTAAA-CAA-TAG-TTAA-TGGGGAGTGAC-GCCA-A-GCCT--------TGTTT-TCAAAATC-CGA-TTCAGA--A-GTAT-TATTG-GCG--AA---TTC-TGAG-AAC-GAATt
gi|18 : CT-TT-TTAAA-CAA-TAG-TTAA-TGGGGAGTGACGG-CA-A-GCCT--------TGTTT-TCAA-ATCGCGATTTCAGA--A-GTAT-TATTG-GCGCAAA---TTC-TGA
gi|19 : T----TCAC-TG-AGT---T-AA-AC---GTA-AAAAAA----------GCATCAAAA--TTG--GCGCAGAAATA-A-C---A-GTT-ATT-G-A---T-CC-----CA-TAAT-----GTGGCTAT-TTTT
gi|2 : AGGG--TTC-TA-T-GC--AAT-GG-----CAAA-AATATTT-T-ATT-GTGAAC--TGCA--GGATTTTCT----TCAC-TGGAGT---T-AA-ACC--GTA-AAAAAA-----CAACCGCATCAAAAA-TCG--GCGCAGAAATA-A-CA-GA-GTT-ATT-G-A---TGCC-----CG-TAAT-----GTGGCT-T-TTTTA-CCTGT--TTTCAAA---------A-TC-----CCAATCAAAGC---AAAAAATAG-AA-CG-ACCGGAAA--CGAGGC-A--TTTTT--CATG-TGACGCTCAATGGA-ATGGTCTA-TCGTAGACGC-G--CTA------------TATGGGAGAC-ATAG---ACA-GTT-TCTGGCT-TT-TTAAAACAAGTCG-TTAA-CTGG-AGTGAT-G-AA-A-GCAT--------TGTTT-C----ATC-CG--TTCAGA--A-GTAT-AA-AT-AC---AA---TTCCTAAT-ATC-GAATTA-----------GGTCAACATCCGC--AATCTTTTT--ATGTCTGAGG----CT-G--C-TAATGTC-CGGTG--------------TG----TA--ATCTTTG-TCAATTTCGTGTCTC--GAGCG---A-GGT--GTG-----GA-GAAATTTTT-TGATGGCTT---TAT-AATAC------CGCGTC--AG-TAC-ACC-A--AGCCATTATA-AAC-G-A-A--AATGGT-A-A-TAG-AAAAATT-AGAACTTTTTG--AAATA---CATCTATT-GTT------GC----AAA-TGA-G-ATTA-ATA----AATG--ATGA-T-GGGTTGTG-A--AAATACAT---TTGATTTT--TT-TATAACGAA-AGA-G-AAAGTA--CGAC-TA--T---CTT-G-AAT-G-A-TGAAAACTATATCT-TGGTTT---TAGCACTAACATTT-ATTG-T-TGCGAAATAGAGA-C-GTG--AAAAATAATTTGACATACAATTA-CATCAAGCTTA-TGAATTTATAAT-AGGTTGTTGTAATTA-GG------AAATAAGTACGAACAGAT----TTCAACCAGACAT-GAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTA----ATTGAT-AGAAAA---A-GTA-T--GGCTTCG-T-AC-ACAATC-T-A--TTGT----TCGGCTCGCTATATACAAA------CAA-A--ATGCACG-CATCAACTAAA--TCC--AT-----AA--TG------------------T-TTTTGATTAGG-ATA-A----GGT----A-CG-ATAGG--------------TAAT-TT--GAAT-TGA-CATCCGA-GAT---TGGA--AT-C--GTGTT--CAA-----A-T----TAGGTA-G--AAA--AT--TG--------T--AAAC-C---ATT------TTACTT-------TGG-------CATCATGC--ATG-GCT-ACGAAG-GTAA-ATAGCAACGC-TATCGGA----AGAGA--AAATTATT-CAGCCAT-AAG-AGCCCC-TT-CGC-TTATATATAATTG-GTTGGA-CTGGACTTGGATGGAACTGG----------ACTCTA--G-ATGAGGAGGAGATTGCATCTGAATAATCCCCGAAC--CA-ACCCCGTCGT-CAGGAC---CAGT-G-ATAGGAGGGAAATGC-CGA----TAC------------TGTCCAG-AC----TGTGC--AATACCGTGCGTTAT-GGATGTCCGAAGGTCGCAC--ATGC-GACAATCAATC-AACAA-TT---CTAATTTTGCATTTTAA--CT-TTTAT-CCTAA-TTTT-ACAATTATATATTAAAATAGTTTTACTTC--AACAT--TTTTGACT---TAT---GACAA-CGTCG---AA--------ACAGAGTT-G--TAC-------G--GCTGGGGG-A-TTAG-TCCCATG-T--TTAT---------A--GG-AC----G-G---TATA-CAC--AAA-CCCTCA----CGCTT-CCT-CCAG-CTATTCACACC-TGC-ATGAAGATT-GCTTCCG--TCC-CACCTAAACT--CCTGAGGTAAG-CGG-T-GGGCGAAAACCTCGGCTA
gi|20 : AGGGATTTC-GA-T-GCCAAAT-G------GAAT-ATCGTTT-A-ATT-GTGA-T--TGCAAAGG-TTTTC-----TCAC-TG-A
gi|21 : taa--CGAC-TA--T--TCTT-G-AAT-G-A-TGAAA-CTATATCT-TGGTTT---T-ACACT-ACATTT-ATTG-T-TGCGAAATctattaagt
gi|23 : agTC-TA-T-GC--AAT-G------GAAT-AACAATT-T-ATT-GTGA-T--TGCAAAGCATTTTCC----TCAC-TG-AGT---T-
gi|24 : gAGGG--T-C-TA-T-GC--AAT-G------CAAA-AATATTA-T-ATT-GTGA-C--TGCAAAGGATTtga
gi|25 : C-GAATTA-----------GGTCAACAACCGC--AATCTTATT--AGGTGTGAGG----CT-
gi|26 : TC-TA-T-GC--AAT-G------CAAA-AATATTT-T-ATT-GTGA-C--TGCAAA
gi|3 : ggTC-TA---GC--AAT-G------CAAA-AATATTTAT-ATTTGT-A-T--GGCAAAGGATTT-CT----ACACGTG-AGT---TGAA-AC---GTA-AAAAA------C---CACATCAAAA--TCG--GGCCGAAAATA-AGCA-GAAGTTCATG-GCAGT-T-CC-----CG-TAAT-----G-GCCA-T-TTTTA-CCCAT--TT-CAAAGAGTGCCCAA-TC-----C-AATCGGAGC---GCAAAATAG-AAACG-ACCCGAAA--------------TTT--C-TGGCGACG-TCA-TGGA-ATGTTC-G-T-GTAGA-GC-GGCCTA-----------CTATGGGAGAC-ATAG---ACA-GTT-TCTGGTT-TT-T--AAACACGTCGTTTAA-T--GGAGTGAT-G-CACA-G-TC--------TGTTT-C----AT--CGATTTCAGA--A--TATATA--G-AC---AA---TTC-TAAT-ATC-GAATTA-----------GGTCAAC
gi|3 : ggTTTTT--ATGTCTGAGG----CTTG--C--AAT--C-CG-TG--------------TG----T----TCGT-G-TCAACCTCGTGTTTC--G-TTG---C-AGT--GTG-----AA-GAAACTTTTTTGATG-CTT---TAT-AATAC------CGCGT---AA-TAC-ACCAG-CAG--AG-ATATA-C-G-A-A--GATGCT-A-A-TAGCAAAAATC-ATGAATTT--GACAAATA---CATCTATT-GTT------GTCGCAAA--TGATG-ATTCTATA----AATCTTATGA-TCGG-TTTCGAAT-AA--AAAT---TTGA-TGT--TT-TATA-CGAA-AGA-G-AAAGTA--GCAC-TA--T--TCCT-GTAAT-G-A-TGAAAACTATATA--TGGCTT---T-GCACTGACATTTAAGTG-TATGTATAAGA-AGA-CAGTG--AAAAA-AAT---A-ATA-----------------A-TGAATCCATAATCAGGTTGTTG-GATTACGGACACTAAG-----TACGA-CA-ATAATGTCAAAC-GGACATCGAA-TT-TAG--AGAGA--AA----TACCTGACGAGT-----ATTGAT-AGAAAA---ACGTA-T---GCTTCG-TAACAAC-ATC-TAA--TTG------CGGCTCGCTATAGAC-AA------CAA-ACTATGAACG-TATCAACTAAAACTCCTAATTAAAGAA--TGAGCAGCACCAGCCCGGCCTGTTTTA--TAGG-ATA-ATCATGTT----ACCG-AT-AT--------------TAATGTT--GAATATGA-C-T-AGT-TAC---TCGAACAT-CCTGTGTTACCTA-----A-T----GAGGTACGAAAAA--AT--CGATAACCGCT--AAA--C---ATTTGATTCTTACTTTAGATGGT-G-------CA----AC--ATGAGCC-ACGAA--GTccccccctccccccacccccccccccccccccccctccaccttttttatgtctgaggcttgcaatccgtgtgttcgtgtcaacctcgtgtttcgttgcagtgtgaagaaacttttttgatgctttataataccgcgtaatacaccagcagagatatacgaagatgctaatagcaaaaatcatgaatttgacaaatacatctattgttgtcgcaaatgatgattctataaatcttatgatcggtttcgaataaaaatttgatgttttatacgaaagagaaagtagcactattcctgtaatgatgaaaactatatatggctttgcactgacatttaagtgtatgtataagaagacagtgaaaaaaataataatgaatccataatcaggttgttggattacggacactaagtacgacaataatgtcaaacggacatcgaatttagagagaaatacctgacgagtattgatagaaaaacgtatgcttcgtaacaacatctaattgcggctcgctatagacaacaaactatgaacgtatcaactaaaactcctaattaaagaatgagcagcaccagcccggcctgttttataggataatcatgttaccgatattaatgttgaatatgactagttactcgaacatcctgtgttacctaatgaggtacgaaaaaatcgataaccgctaaacatttgattcttactttagatggtgcaacatgagccacgaagtta
gi|4 : ggtctagcaatgcaaaaatatttatatttgtatggcaaaggatttctacacgtgagttgaaacgtaaaaaaccacatcaaaatcgggccgaaaataagcagaagttcatggcagttcccgtaatggccatttttacccatttcaaagagtgcccaatccaatcggagcgcaaaatagaaacgacccgaaatttctggcgacgtcatggaatgttcgtgtagagcggcctactatgggagacatagacagtttctggtttttaaacacgtcgtttaatggagtgatgcacagtctgtttcatcgatttcagaatatatagacaattctaatatcgaattaggtcaacccccccctccccccacccccccccccccccccccctccacctT--G--AAATA---CATACATT-GTT------GC----AA--TGAAG-ATTA-ATA----AAT--TATGA---GG-TTGTG-AT-AAATAA-T---TTGATTTT--TT-TATA-CGAA-AGA-G-AAAG----CGAC-TA--T--TCTT-G-AAT-G-A-TGAAA-CTATATTA-TGGTTT---T-GCACTA-CATTT-ATTG-T-TGCGAAATA-AGA-C-GTG--AAAAATAATT-GACATA--ATTA-CATCA-GCTTA-TGAAT-TATAAT-AGGTTGTTGTGATTA-GG------AA-----TA-------AT----TCCAAC-AGACATTGAA-TT-TAGAAAGAGA--AAG---TA-CTGAC-AGTATTCTAGTGAT-AGAAAA---A-GTA-T--GGCTTCG-TAAC-AC-ATC-T-AAATTG-----TCGGCTCGCTA-ATACAAA------CAA-A--ATGCACG-CATCAACTAAA--TCC--AT-----AA--TG------------------TGTTTTGATTAGG-ATT-A----GGT----A-CG-ATAGG--------------TAAT-TT--GAAT-TGA-CAT-AGG-GAT----CAA--AT-C--GTGTT--CAA-----ATT----TAGGTA-GAAAAA--GT---G--------T--AA---C---ATT------TTACTT-------T-G-------CA----AC--ATG-GCT-ACGAA-------A-------GC-TATCGGA----AGAGA--AA-TTA-C-CCGCCAT-AAG-AGCCCCTTT-CGC-TTATA----AT-G-GATGGA-CTGCA------------TGG----------ACTCTA--G-ATGAGGAAGAAATTGCATCTG-ATAATCCT-GAAC--CA-CCCTCGTCGT-CAGGAC---CAGT-G-ATAGGAGGG-AATCG-CTA----TACAATCAGAT-GAATGTCCAG-ACTGCATGTGC--AA-ACCGTGCGTTAT-GGACGT--CGAGGTCGCAC--ATGCAGACAATCAATCAAATAAATT---CTAATTTTACATTTTAA--CT-GTTTA-CCTAATT------AA------A-----AT-GTTTTACTTC--AACAT--TTTTGACT---TAT---GACA--CGTCG---A---------------------CAC-------G--GCCTGGGG-A-TTAGATCCCATG-TTATC-----------A--GG-AC----G-G---TATA-CACAAAAA-CCCTCA----CGCTTCCCT-CCAG-CTATTCACACC-AGC-AC-AA-ATT-GGCTCCG-CCCC-CACCTAAACTTAta
gi|5 : gG--CTC-TA-T-GC--AAT-GT-----CAAATAATATT----ATT-GTGA-C--TGCAAAGGAATT-CT----TCAC-TG-A-T---T-AA-ACAC-GTAGAAAAAA-----G---CCCATCAAAG--TCGA-GCGCAGAAATACA-CA-TA-GAT-AATAG-AGTGT-CCAAACGTG-TAATCAGTGGTGGTT-T-TTTTAGCTTGT--TTCCAAA---------AATC--------ATCG-AGC---AAAAA-TAG-AAACGCACCAGAAAAACGAGGC-A--TTTTTTTC-TG-TGACG--CA-TGGA-ATGTTCTAAT-GTAGG-GCCGG-CTA-----------CTATGG-AGAC-ATAAGACACA-GTT-TCTGCTT-TT-TTAAAATAGTTCG-TTAA-TGG--AGTGA--G-AA-ACGCTA--------TGTTTTC----ATCACGATTTAAAGCTA-GCAT-CA-AGAGC---A----TTC-TAATTAT--GAATTA-----------GGTCAACAACCGCTCAATCTTTTTTAATGT-TGAGG----CTAG--C-TAAT--CTCG-TG--------------TG----TAT-AT-TC-G-TCAATTTCTTGTCTCTTGAGCG---ACAGT--GTGTCCGAAA-GAAACCTTT-TGTTG-CATCGCTATTAATACACTCATCCCGTGCGAG--AT-AAC-GACAGCAAT-AGA-A-TAG-ATA--AATGGT-ATACTAG-AAAATTA-ATGACTT---G--AAACATGACATTAATT-ATT------G------A--T-----ATTA-ATATATGAATT-TATGA---GG-TTGTG-AT-AACGAGATCATTTAATTTTCTTT-TATA-CGAA-AGATG-AAAGTAGACGAC-TA--TATTCTTTG-AAT-G-AATGAAA-CTATATAT-GGGTTT---TGGCACTATCATTTCATTG-T-T----AATAGATAGT-ATA--AAAAAAAATac
gi|6 : gtAAA---A-ATA-T--GACGTTG-TAGC-AT-ATC-T-T--TTC-----TCGGCTCACC-TA-ACAAATCTTTACAACA--ATACACG-CGTGAATTAAA--TCC--AT-----TA--TG------------------TGTTTTGATTAGATATA-T----AGT------CGCATAAT--------------TAA---T--GAATCTAATCAC-AGG-GAGGCATCGA--AT-C--GTGTT--TGATATGTATTACGGTAGG-A-GAAAAAATAT--TG--------T--AAGC-CATAATT------TTAC-T-------T-G-------CA----GA--ATG-GCT-ACGGATTGTAACG-------GCGCAACGCATTCGAGAGACTGAACCATCACCGCAAT-AAGCAGCACTTTT-CGCGCT---TATAATTGAATGGGA-CTGGACT---------CTAG----------ATCCT---G-ATGATCA------TG-ATCT-----ATCTC--ACC--CT-ACCTCGTCGT-CAGGACAGAC-GT-GAATAGGAGTG-AATGCGCGA----CGT-----GA---A-TTTCCAG-ACTGT-TGTGC---A-ACCGTGaa
gi|6 : -TTTTT-GCTAATTTTTTACAATTATACATT----T-ATTTTACCTT--AACAC--TTTTGAC-------------AA-CGTCGTAGAA--------ATAGAGGTAG--CAC-------G--ATCCGGGA-A-ATAAATCCCGTC-TTATCA----------A--GA-A-----A-G---TATG-C-------------------------------G-CAATTCACACC-TGC-AT-AAGATT-GGCTCCG-CCCT-TACTTAAACTTACCTAAGGTAAACCAGTT-TGTCAAAAAGCTCGGCtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatataatcaatatattcctgataaaattatataaaaaatttttgctaattttttacaattatacatttattttaccttaacacttttgacaacgtcgtagaaatagaggtagcacgatccgggaaataaatcccgtcttatcaagaaagtatgcgcaattcacacctgcataagattggctccgcccttacttaaacttacctaaggtaaaccagtttgtcaaaaagctcggccttt
gi|7 : aaaaatatgacgttgtagcatatcttttctcggctcacctaacaaatctttacaacaatacacgcgtgaattaaatccattatgtgttttgattagatatatagtcgcataattaatgaatctaatcacagggaggcatcgaatcgtgtttgatatgtattacggtaggagaaaaaatattgtaagccataattttacttgcagaatggctacggattgtaacggcgcaacgcattcgagagactgaaccatcaccgcaataagcagcacttttcgcgcttataattgaatgggactggactctagatcctgatgatcatgatctatctcaccctacctcgtcgtcaggacagacgtgaataggagtgaatgcgcgacgtgaatttccagactgttgtgcaaccgtgtccgggtttcgttaggtaggggacctcggcaattagtccctagcctccctcccccgttttttaccacgaaaaaaaatcgtttaaattttaatataatcaatatattcctgataaaattatataaaaaaTC-TA-T-GC--AATAG------AAAG-AATATTT-C-ATT-GTGA-T--TGCAAAAGATTTTCT----TCAC-TA-AGT---T-CA-AT---GTA-AAAAAAACCCAC---CGCATAACAA--TCG--GAGCAGAAACT-G-CA-GA-GTT-ATC-G-A---G-CC-----CG-CAAT-----GTGGCT-A-TTTTA-CCTGT--TCTCAAA---------A-TC-----C-AATC-GAGC-----AAAATAG-AAACT-TCCGAAAA--TGAGGCTG--GTCTG--A-TG-TGACG-TCA-CAGT-ATA-TCTC-T-GTAGA-AC-GG-CTA-----------GTATGGGAGAC-AGAG---ACA-GTT-TC-GGCT-TT-TT-GAAC-AGTAG-TTAA-T--GGAGTGAC-A-CA-A-GCTT--------TGTTT-C----ATC-CGA-TTCGGA--A-GTAT-T--CG-GC---AA---TTC-TAAT-ACC-GAATTA-----------GGcttt
gi|8 : gAGATAATTA-TGAAAT---TTTGACTACTTTTACAGCAAAA--CA-CTCT--CCT--TTTTT-TTAAT-ATATATT----T-GTTTTACTTC--AA-AT--ATTTGACTACATAT----ACAATCGTTG---AAGATATAAAATAGCAGTAA--CACAGTAACAG--GCCCAGGG-A-TTAGATTCCGTGATTATCAGCGTGTTATCA--GG-AC----G-G---TATAACAC--AAC-TCTCCA----C-TGC-CCTTCCAG-CAATTCACACCCTGC-AT-TATATTTAGCTCCA-CCCC-CATATAAACTTACCTGAGGTAAACCGG-G-GGTCGAAAAATCCGGg
gi|9 : ttttggattagaatagtacaatTGTGC--AG-ACTGTGCGTTAT-GGATG------AGTTGCAC--A----GACAATGAATCATTTTA-TT---TTT-TTTTACAT---AAATCT-TTCTT-CCTAATTTTT-ATAATTATATATTT--AT-ATTTTACTTT--AACAT--TTTTGACT---TATAATGACAA-CGTTG---AG---------TACAGGTAA--CAC-------A--GCTCGGGT-A---AGATCCCGTG-TTATCAG---------AAAGGTAC----ATG---TATA-CAC--AAG-CTCTCA----C-CCT-CCC-CCGG-CAATTCACACC-TGC-GT-AAGATT-GGCTCCGCCCCC-CACCTAAACTTACCTGAGGTAAACTGG-TGGGTCG-AAACCTCGGCTAtctttaaacaatagaattaccct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AATATGCTGAAGGGAGGGGGGGGGGGACAAACAACCAAAAATCAATATCTGTATGTATGA