lowQualScore : 333333333333333333333333333333 1111111111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 11 222 11 6666666 22222222 2222222 11 222 2222222222222222222222222222 3333333 22222222 3333333 111 1 444444 111 2222 5555 11 2222 1 111 1 11 2 44444444 66666666666666666666 222 22222 4444444 4444444444444444 22 777777777777777777 2222 222 3333 11 11 2222 333333333333333333333333333333 1 0000000000000000000000 2 44 1 1 1 2222 1 2 1 77777777777777 1 22 111 1 333333333 1 11 1 44 11 111 1 1 1 22222 1 11 2222222 333 1 33 2 1 1 3333333333333333333333333333333 3333333333333 2222222222 11 22 11 1 22 44444444 8888888888888888888888888 333333333 3333 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1111 3333333333 22222 2222 2222222 1111 1 33333333 11 4444444444444 222 1 4 11 11 2 1 2 11
lowQualScore : 77 1 333 4 8 11 4444444 6 99 3 88888888 2222222 88 22 77 2 66 555 99 2 8888888888888888888888888888 6 6 7777777 11111111 6 6666666 99 777 8 0 8 3 666666 0 88 444 5555 6666 33 4444 3 555 3 88 6 88888888 88888888888888888888 111 11111 0000000 5555555555555555 22 999999999999999999 8888 6 666 7777 88 6 7 88 55 1111 000000000000000000000000000000 6 3 8888888888888888888888 3 55 3 9 0 2222 3 7 7 7 3 3 6 7 33333333333333 0 2 33 777 3 0 888888888 5 33 0 33 3 7 88 2 777 2 0 0 0 55555 0 55 11 1 1111111 333 5 00 3 0 55 0 0 9999999999999999999999999999999 1111111111111 2222222222 7777 33 33 88 3 00 7 1 88888888 3333333333333333333333333 777777777 0000 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 5555 5555555555 888 99 6 00000 0000 7777777 6 5555 1 00000000 1 0 8 66 4444444444444 555 0 0 33 11 3 0 0 8 0 0 11 3
lowQualScore : .. . ... . . .. ....... . .. . ........ ....... .. .. .. . .. ... .. . ............................ . . ....... ........ . ....... .. ... . . . . ...... . .. ... .... .... .. .... . ... . .. . ........ .................... ... ..... ....... ................ .. .................. .... . ... .... .. . . .. .. .... .............................. . . ...................... . .. . . . .... . . . . . . . . .............. . . .. ... . . ......... . .. . .. . . .. . ... . . . . ..... . .. .. . ....... ... . .. . . .. . . ............................... ............. .......... .... .. .. .. . .. . . ........ ......................... ......... .... ....................................................................................................................................................................................................................................................................................................................... . . .... .......... ... .. . ..... .... ....... . .... . ........ . . . .. ............. ... . . .. .. . . . . . . .. .
lowQualScore : 33 0 333 0 2 00 2222222 4 22 5 33333333 5555555 33 00 77 5 00 333 22 2 5555555555555555555555555555 7 7 7777777 33333333 7 4444444 00 000 0 8 0 6 666666 8 88 000 0000 5555 22 2222 3 000 3 33 7 33333333 77777777777777777777 777 00000 3333333 7777777777777777 88 000000000000000000 3333 7 333 0000 33 7 3 00 55 0000 000000000000000000000000000000 7 3 0000000000000000000000 7 00 3 0 0 7777 3 3 3 3 7 3 7 3 33333333333333 0 0 88 555 2 0 222222222 0 88 0 88 2 0 88 5 555 5 0 0 0 00000 0 55 88 2 0000000 000 0 00 0 0 00 0 0 8888888888888888888888888888888 2222222222222 8888888888 2222 88 22 33 3 77 3 0 33333333 0000000000000000000000000 333333333 7777 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 8 4444 0000000000 000 22 7 22222 0000 2222222 7 2222 7 44444444 0 8 0 22 0000000000000 555 0 0 88 00 2 0 0 0 4 8 00 2
consensus : AAAAN-TCACCC---TCCNCAAGGA--TTGAACC---CTGGNCCT--CAC-CTCGT--GCA-A-----GGCGA-GGCA-CAAANCCCC-TTGGCTATT-C--CAAGNAT--------GTGTT-A-AT-T-T-AANA-A-G-ATTTTAAC-TC----TTTAAT---TTGCCACAAA-AAGTA-TA----TACTTGT--GT-CTT-TTTATTTGTAN----TAT-AT---ATGCAAATA---TCTACT--AAAAACTA-CATGT-AATATATG-AAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAG-CA-GGCCTA---ATCTACA-TAAGACGTT--CGTGTTTGTG-TGGAATCATAGATCGTAG--T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA------T-TATGACAGA-ATATTTAA----TGGAAGATGCAGTTT-NAGTTTA--AACATTATAAAA--ACATCGGGCGTAACTGCTGAGAGTATGAAAACTTCCTNNCCACCATGTANNGGG-TAAGGGGTG-----------T--GTCACCCCGTGG-TCCAC-------TCA------TATA--ACACTATAAAACATTCGTTATAA-TTTTCTTAAT-GTGC-CGATTTTTATCCTTT-CATG-A--AA-TAAATGCGTTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--TTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGC-ATGTACAATGTCT---CTCCGACAC-TC-CC-GAG-----GGTAA-TAGGTTAGTTTCCTTTAGACAAN-AC-T-GAGGATAAATCACACTGCGCCGGAATATTGGTATCGTTGACCGAAACNAAGCTTTNGGATCNNCCATTTT-CTGC-GC-AACG-TGGCGT-C------TTGA-A--A--CGCAGCG----CC--CCTA-GCGA--TA-AT-C-GAGTGAAATT--CAAGAACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--C-A-TTTA----GC--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATTNTTGTATTATCA-AGAAGATGTGCCATAAGGGTATGTTGTGAGTTTGTTCGGCTTNAGGGACGTCANTAATAACTTNGATCAGTATTTTTCGTGCCNNCTTTG--CT-GTT-TTTA-----CAGAT--TTCAAGGGGAATA--A----AGTGGT-------GTTTT--GTA--GG----ATT-----GCA----C-T-AA--G-TGAACAT---------CTCCAANGTCTCATNAAATAT--A-----------TGT-CCAT--------TATT----TTTGGA----AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGT-TATNAAAAATA-TGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTT--ATCACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
Reference ( gi|2 ) : AAAAT-TTACCC---TCCTCAAAGA--TTGAACTTCTCTCGCCCT--CAC-CTCAT-AGCA-A-----GGCGA-GACA-CAAACCCCC-TTGACTATT-C--CAAGAAT--------GTGTT-A-AT-T-T-AACA-A-G-ATTTTAACGTC----TTTAAT---TTGCCACAAA-AAGTA-TA----TACTTGT--GT-CTT-TTTATTTGTAA---ATAT-AT---ATGCAAAT----TCTAA---AAAAACTA-CATGT-A-TATATG-AACTTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGTTA-GGCTCT---ATCTACAATAAGACGTC--CGTGTTT-TG-CGCAATCATAGATCGTAGGGT---AAC-T-AGA-TCATTGTAAGGAATGTCTGCTA------TATA-GATAGAGATATTTAA----TGGAAGATGCAGTTTGAAGTTTATTAACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAAACTTCTTTGC-AC-ATGTAGGGGGATGGGGGGGGGGGGGGGGGGGTCAGTCACCCCGTGG-TCCAC-------T-A------TATAA-ACACTATAAAACATTCGTTATAATTTTTCTTAA--GTGC-CGATTTGTATCCTTT-CATG-A--AA-TAAATGCATTAAAGTTACCAAAGATGC-GTTGACTGCGTGATATGACAACTGTT-TGTT--TTGCTCGA-TCTTGGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATG--ATGTACAATGTCT---CTCTGACAC-TC-CC-GAG-----GGTAA-TAAGTTAGTTTCCTTTAGACAAG-AC-T-GAGGATAAATCACACTGCGCCGGAATATTGGTATCGTTGAACGAAAACAAGCTTTTG-ATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG----CC--CCTAAGCGA--TA-GT-C-GAGTGAAATT--CAAGA-CGAT--AAC-CGA-AAAATGTATGA--------AAATCGAAA--C-ATTTTA----GC--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAAT-ATT----TATT-TCAAAGAAGATG--CC-TA--------TT-T--ATTTGTT-----TA----ACGTTAAT-ATAA--TGA-T--ATATTTTTCCTACCCCTTTTG--CT-GTT-TTTA-----TAGAT--TTCAAGGGGAATA--A----AGTAGT-------GTTTT--GTAATAG----ATT-----GCA----C-T-AAGAG-TGAACAT---------CTCCAAAGTTTCATGAAATAT--A-----------TGT-CCA---------TATT----TTTG-A----AC-GAAGTGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTCCTTAAAC----ATTAT-TATA---ATGGCTTAGT-TGTCAAAAATA-TGGGAATCA-------------TTTC-GGTGA-ACATGGTACTT--ATCAGAAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAGT
gi|1 : AAAAA-TCACCCCATTGTTTAATGAATTTGAAC----CTAGGCCTATCAC--TCAA-TGCA-A-----G-C-A-GGCA-TAAACCTC--TTGGCT--T-CATCGCTTAT--------ACATTCA-GTAT-T-AACAGA-G-ATTT-AAC-TCG---TTTAATC--TTGCTACAAA-AAGTA--A----TA-TTG---GT-CTCATTTCCTTGTAT----TAT--T---ATGCAAATATTCTCTAACTGAAAAACT--CATGT-AATATATG-AAACTACCCTCGTGTGA-GA--TCAGTAT--------TTAGGTAC---GCAG-----GCCCCCTAATCTA--ATAAGACGTT--CATGTTG-TG-TGGTATACTAGATCGTAG--T---GAC-T-AG---CATGGTAAAGA-TGTCTGCTAATGCATTATA---CAGGAATATTTAA----T--AAGATGCAGTTTTGAGTT----AACATTATAAAC--ACAGAGGGCGTAA-TGCTGAGAGTATTAAA--TTCCTTGCCACCATGTATT----TAAGGGGTG-----------T---TCACCTC-TGGATCCACATCATAGT-A------TAT----CACTACAAAACATTCGTTATAATTTGCCTTAAATGTGCGCGATTT--ATCCTTTTCATG-AGAAA-TAAATGCAT--AAGT-ACCAA-GATGCCGTTGA-TGCG--ATATGACA-------TGTTAATTGCTCGAGTCCTAGCTTCCATTAATCAGAGTTACCAACCTGCTCCATTTT-C---CG-ATGC-TCCCTCTATCATCGAAGTGACGCCACGATGC-ATGTGCA-TGT------TCTGACAT-CC-CC-GGGTCCTGGGTAA-TAG--TAGTT--CGTGAGACAAGCAT-T-GAGGATAAGTCACACTGCGCCGGAATAT--GTATCGTTAACCGAAACAAAGCTTTGG-ATCGTCCATTTT-CTGC-GCCAGCGGTGACG--C------TTGG-ACAA--CGCAGCG----CC--CT--AGCGA--TA-ATGC-GAGTG----T--CAAGAACGAT--AAA-CGA-AAA-TGTCCGA--------AAAATGAAA--C-AATATATAAGACA-GA-----GGTTTTA-AAA----TGTTATATT---AAAACGT-----TCAA--ATAAG-T-ATTGT--TATT-TCA--GAAGATGTGCCATA--------TTGT--ATTTGTTCGGCTTT----ACGTCATT-ATAACTTGAAT--ATATT---CATACCCGCTTTGACTT-ATTATTTAAGAGTTAGAT----CAAGGGGAATA--ACGAAAGT-GT-------GTTTT--GTA---G----ATT-----GCATCAGC-T-A------GAACAT----------TCCAA-GTCTCATTGAATAT--A-----------TGT-C-A---------TATTGTGCTTTGGA----AC-GAAGTGAAACTAAAATA----------AAAAA-A-C--T-TAGG-CATAATTCCTAGGAA----GATATCTATG---ATA-CTTAAT--ATAAACAATA-TGGGA-TCAATTTCAAATGCAGTTTCAGGTGACACATGG-ACTTGTATACGAAAGA-GCGAGTTTATGCCTAGATTTTTTACGTCTGG-ACCGTA
gi|9 : tataataaaataattaaaaaaaaaaaaaaatAAAATATTACCC---ACCCCAAGGT--TTGAACTCCT---GCCCT--CAC--TCGT--GCA-A-----GGCGA-GGCA-CAAAATCCC-TTGACTA-T-C--CAAGAAT--------GTGAT-A-ATCT-T-AAGA-A-G-ATTTTAAC-TC----TTTAAT---ATG-CACAAA-AAGTA--A----TACTTGA--GT-C-T-TTTATTTGT-A---TTAT-AT---ATGCAAAT----TC
gi|14 : aataa-TCACCC---TCCGCCAGGA--TTGAACC---CTGGTCCT--CAC--TCAC--GTA-A-----GGCGA-GGCATCAAACCCC--TTGACTA-T-C--AAAGAAT--------GTATT-A-AT-A-A-AGGA-AGG-ATTTTAAC-TC----CTTAAT---TTG-CACAAA-AA
gi|3 : CAAGGA--TTGAACT---CTTGACCT--C-T-CTCAT--GCA-A-----GGCGA-GGCA-CAACACCCC-TTGACTAT--C--CAAGAAT--------GTATT-A-AT-T-TTGACA-A-G-ATTTTAAC-TC----TTCAAT---TTGC-ACAAA-AAGTAATAGATCTACTTGT--GT-CTT-TT-ATTTGTAT----TAT-AT---ATGCAAAT----TCTACT--AGAAACTA-CATGT-AATATATG-AAACTACCCTCTTATGA-GA--TC-GTAT--------TTAGGTAC---TCAATTA-GGCCTA---ATCTACA-TAAGACGTT--CGTGTTTGTG-TG-AATCATAGATCGTAGG-T---AAC-T-AGA-TCATTGTAAGGA-TGTCTGCTA------T-TATGACAGA-ATATTTAA----TGGAAGATGCAGTTTGA-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATG-AAACTTCTTGCC-AC-ATGTAGGGGG-T----------------------GTCACCCCGTGG-TCCAC-------TCATTAATTTATAATACACTATAAAATATTCGTTATAA-TTTTCTTAAT-GTGC-CGATTTTTATCCTTT-CATGAA--AA-TAAATGCGTTAAAGTTACC-AAGATGC-GTTGACTGCGTGATATGACACATGTTATG----TTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATAC-ATGTAC-ATGTCT---CTCTGACACTTC-CC-GAG-----GGTAA-TAAGTTAGTTTCCTTTAGACAAT-ACTT-GAGGATAAATCAC
gi|8 : aCAAGGA--TCGAACC---CTGGTCTT--CTTTCTTGTTAGCA--------GTG--GA-A-CGAAACCCC-TTAGCCAT--C--CAAGTAT--------G-GAT-ATAT-TGT-TATA-A-GGATTTTAAC-TC----CTAAAT---T-GC-ACAAA-AAGTA--A----TATTTGT--GT-CTT-TT-ATTTGTA-----T-T-AT---ATACAAAT----TCCACT--AAAAACTA-CATGT-A--ATA
gi|5 : acagCT--CAC-TTCAT-AGCACATTTTTGGCGGCGATA--AAGCTATTATTGGCTATTGC--CAGGGGTTATCATAGATGTC-T-GT-C-T-GAGC-A-G-ATTTTAACCTCTTCTTTTACTCTCTCGCCACAAACAAGTT-TA----T--TTGTAGATACTT-ATCATCACTAATGCATATAATCTGATGAAAGTA---TCTACT--AACATCTACCATGTAA-TATATGAAACT--CCCTCTTGTGACGAGTTCTGTATTTATTTTCTTAGGTACGGATCA--CACGGCCTA---ATTAACATTCAGACGTCAAC-TGTTTGTGTTGGAATCATAAGTCGTAACGTGTGGACATAAGAGTCACTGTAAGG-ATGTCT
gi|15 : tataatacaataaattaaagaagcataaattaaatataaaaaaaacatccacatttcagggtttgtatgaagaactgtggaaccctggtctggtATGTCTGCTA------T-TATGACAGA-ATATTTAATTAATGGAAGATGCAGTTT-CAGTTTA-TAACATTATATAATTACATCAGGCGTAACTGCTGAGAGTATGAAA
gi|16 : gCACCCCGTGG-TCCAC-------TCA------T-TAT-ACACTATAGAACATTCGTTATAA-TTTTCTAAAT-GTGG-CGATTTTTATCTTTT-CA
gi|6 : TATATCCTTT-ACTG-A--AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT----GCTCGA-TCTTGGCTTCA-TTCATCG---TTACCAAC-TGCTCCATTT--------------TCCGTCTATCATC--AGTGACGCCA-GATGC-ATGTACA-TGTCT---CTCTGACAC-TC-CCCGAG-----GGTAA-TAAGTTAGTTTCCTTTTGACAAA-AC-TTGAGGATAAATCACACTGCGCCGGAATATTG-TATCGTTGACCGAAA-CAAGCTTTTGGATCCGCCATATT-CTGC-GC-A-C--TGGCGT-C------CTGAGA--A--CGCAGCG----CC--CCTA-GCGA--TA-AT-T-GAGTGAAATT--CAAGAACGAT--AAC-CG--AAAATGTATGA--------AAATCGAAA--C-A-TTTA----GC--AA-----GGTTTT---AAA---TGTTATATTTTAAAAACTT-------AA--AAAAAaa
gi|17 : GCTCGA-TCTTAGCTTC--TTCATCA---TT-----C-TGCTCCATTT--C---TGCATGCCTCCCTCTATC
gi|7 : taTCCATTTGCCAGGTATATGT-TCCTCCTATCTTC--AGTGACGTCA-GATGCCA-GT-CAATGTCTTCACGCCAA-AC-TCACC-GAG-----GTTAGCTAGGGTCGTTGACTTTGGATA
gi|4 : ttCATTTTGCTGAAGC-AACA-TGAAGT-CCTTTAGTTAA-A--AAGCGCAGCAGAATCCATCCTTCGCGAATTACAT-CAGAGTGAAAATAGCAAA---GATAGAACATGATAAAACATACGATGTAGCGTAAATCGTAAGGCAATGTTT----GCCTGAGACACGGTTTTATAGAATTCTGTTATATT-----AACTTCTTTCTCAAAGAAAAAATCATTCTTGTATTATC--AGAAGATG--CC-TAAGGGTATGTT-TGAGTTTGTT-----TAAGGGACGTTAGTAATAA--TTG-TCAGTATTTTTCGTGCCGCTATTG--CTGGTT-TTTT-----CAGATTCTTCA--GGGGATA--A----AAAGGTGAGGATGGTTTTAGGTAA-AG----ATTATGCGGCA----CATGAAGAGATG-ATATTGCTTTATGCTCC-ATGTTTTTTCAATTAT--GACGATTTGGATTGT-CCATAGGTTGTGTATC----TTTG-AGAGTACAGAAGTGAACT--AATTATGCAACTTTGAACATAAGC--T-T--G--ATGTTT--TTACAT----AATAC-TTTGAGCATGA--TAGA-TATTAGTAATATTGGGCATCA-------------TTTC-ttttgaaaagctttgaaggtatctagagcacgtcctcatcgatcggaataatgtcttacacggtgcctcaaatatcaaaacaaggtatccgcgccaatagcgtgcttgacaacgcagcgtccctatcgatcatcgagtgaatttcaagaatat
gi|7 : T-CCGC-GC-CAA--TAGCGTGC------TTGACA--A--CGCAGCG----TC--CCTA-TCGA--TC-AT-C-GAGTGAATTT--CAAGA-
gi|10 : tttccatttgccaggtatatgttcctcctatcttcagtgacgtcagatgccagtcaatgtcttcacgccaaactcaccgaggttagctagggtcgttgactttggatattttgaaaagctttgaaggtatctagagcacgtcctcatcgatcggaataatgtcttacacggtgcctcaaatatcaaaacaaggtaTTTA--CT-GTT-TTTA------AGAT--TTGAAAGAGAACACAA----AGTAGA-------GTTTT--GTATTGGATTAATT-----GCA----A-T-TATTA-TGAAC-T---------C-----AGACTCA--AAATATACA-----------TGTACTATT-------TATT----TTGG-AT---AC-GA--TGAA----AAATC----------AAACCCT-CTTT-T--G-TATATTTGATTAAACTGTTAATAC-TACA---GTGACTTatat
gi|11 : TCCAAG--TTCATGAA----------------------------------TATT----TTTGGA----AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-TG-G-CATAATTGC-TAAAC----A-TAT-TATG---ATGACTTAGTATGC--AAAATA-TGGG-ATCA-------------TTTT--GTGA-ACATAG-ACTT--ATCACGATAATGCGATTTT-TGCCT-GA-TTTTTACG--TGG
gi|12 : AGCAAAAT--AAACA----------AAAATTA-C--TGT--GGCACATTTGCT-AAAC----AT-AT-TGCG---ATAACTTATT-TTGCAAAA-TA-TGG-AATCA-------------TTTC-G-TGA-ACATGG-ACTT--ATCACGAAAATGCGA-TTT-TGTCT-GA-TTTTTATG--TGGAACCCTACTTAA
gi|13 : TA-C--T-T--GGCATATTTCCT-AAAC----AT-AT-TATG---ATAACTTA-T-TATGCAAAATA-TTGGA-CCA-------------TTTC-G-TGA-ACATGG-ACTG--ATCACGAAAATGCGA-TTT-TGCCT-GA-TTTTTACG--TGGAACCGTACTTAAG
gi|18 : CCT-GATTTT-TACG--TGGAACCGTACTTAAca
Alignments
lowQualScore : 111111111111111111111111111111 11111111111111111111111111111111111
lowQualScore : 11 111 111 1111 111 1 11111 111 22222222 111111 1111 1111111111 2222222 111111 22222 1111 1 11 2 33333333 33333333333 111 2 11 1 333333333 111 11 11 2222222 111 22222 1111 3333 11 2 1 2 111111111111111111111111111111 1 1 6666666666666666 111 11 1 11 2 1 1 11 111111 11 111 222222 1 11 11 11 111 22222 11 2 22 1 22 333333 222222 2222222 2222222 11 11 1 11 33333333 11 55555555555555555555555 11 2222 2222 222222 11 111 2222 333333 33 11111111111111111111111111111111111 11 5555555555 11 1 1 1 22222222 33333333333333333333 11 999999999999999999999999999999999999999999999999999999 5555555555555555555555555555 11 111 2222222222 2222 1 222222 111 11 3333333333333 111 1 1
lowQualScore : 11 777 1 99 000 3 1 2222 77 000 5 1 5 44444 0 1 5 6 77 999 77 1 00000000 0 666 666666 1 5 5 7777 5 3333333333 5 7777777 5 3 99 6 6 9 77 99 999999 55555 1111 0 8 0 3 0 33 0 66666666 99999999999 777 2 0 3 33 55 0 8 666666666 111 33 33 6666666 55 111 33333 2222 4444 33 2 2 3 2 22 6 3 333333333333333333333333333333 2 0 0 2 2222222222222222 444 33 0 9 8 33 0 2 3 3 0 0 2 3 11 888888 8 99 444 0 8 555555 5 0 11 8 3 11 2 11 000 8 00000 8 0 5 11 0 22 4 00 22 8 8 222222 88 333333 0000000 6666666 3 8 11 8 999 0 22 88 33 0 33 55 66666666 33 99999999999999999999999 33 0000 0000 888888 33 888 7777 222222 00 55555555555555555555555555555555555 0 1 44 5555555555 7 3 0 222 33 0 0 9 33333333 33 99999999999999999999 33 111111111111111111111111111111111111111111111111111111 1 9999999999999999999999999999 8 8 99 8 0 000 9999999999 3 5 5 2222 1 11 111111 5 1 000 1 9999 44 6 00 6666666666666 666 8 8 8 6 8 6 5 99 0
lowQualScore : .. ... . .. ... . . .... .. ... . . . ..... . . . . .. ... .. . ........ . ... ...... . . . .... . .......... . ....... . . .. . . . .. .. ...... ..... .... . . . . . .. . ........ ........... ... . . . .. .. . . ......... ... .. .. ....... .. ... ..... .... .... .. . . . . .. . . .............................. . . . . ................ ... .. . . . .. . . . . . . . . .. ...... . .. ... . . ...... . . .. . . .. . .. ... . ..... . . . .. . .. . .. .. . . ...... .. ...... ....... ....... . . .. . ... . .. .. .. . .. .. ........ .. ....................... .. .... .... ...... .. ... .... ...... .. ................................... . . .. .......... . . . ... .. . . . ........ .. .................... .. ...................................................... . ............................ . . .. . . ... .......... . . . .... . .. ...... . . ... . .... .. . .. ............. ... . . . . . . . .. .
lowQualScore : 00 555 0 22 000 0 0 1111 99 777 0 4 7 33333 7 7 7 6 99 111 99 0 77777777 1 111 666666 0 7 7 9999 7 6666666666 7 3333333 2 5 22 7 7 8 77 22 222222 44444 8888 8 0 8 2 0 88 0 22222222 55555555555 555 5 0 2 88 88 0 8 000000000 000 22 88 0000000 88 000 88888 0000 0000 88 0 5 7 0 00 7 3 000000000000000000000000000000 5 0 0 5 8888888888888888 888 22 0 2 0 88 0 0 2 2 0 0 5 2 88 888888 0 00 000 8 0 888888 2 8 00 0 8 44 8 00 000 0 00000 0 6 6 00 0 33 0 77 00 0 0 000000 88 000000 0000000 0000000 2 0 00 0 222 8 00 88 88 0 22 22 22222222 88 22222222222222222222222 22 8888 8888 222222 88 333 0000 777777 33 77777777777777777777777777777777777 7 0 77 0000000000 3 7 7 777 88 0 0 0 22222222 55 00000000000000000000 88 000000000000000000000000000000000000000000000000000000 0 9999999999999999999999999999 0 0 00 0 7 888 2222222222 9 7 7 9999 4 99 000000 7 4 000 7 5555 00 7 55 7777777777777 777 0 0 0 0 0 7 5 22 8
consensus : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACCTCAT-GCA-A-----GGCGAGGC-ACAAAACCCCT--TGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAAT-TT----GCCACAAA-AAGTA-TA----TACTTGTG--T-CTT-TTTATTTGTAT-T--ATATA------TGCAAATAT---CTA-CT-AAAAACTAC-ATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTA-GGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTA--GG-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAAT----GGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------TGGGGGG-G-----------T--GTCACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA--AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGAC--AC-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACAAG-ACTTGAGGATAAATCACACTGCGCCGGAATATT-GTATCGTTGACCGAAAC-AAGCTTTTGGATCCGCCATTTT-CTGC-GC-AACA-TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATT-TT-TATT-TC-AAGAAGA--TGCC-TA--------TT-TG--TTTGTTCG--TTTA---ACGTTANTAATAA--TTGAT--ATATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGAATA--A----AGTGGT-------GTTTT--GT-A-TGGATTA--C-GCAC-T-A--A--GT-GA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-CT-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTATGNAAAATA-TGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
Reference ( family-4263 ) : AAAAN-TCACCC---TCCNCAAGGA--TTGAACC---CTGGNC----CT--CACCTCGT-GCA-A-----GGCGAGGC-ACAAANCCCCT--TGGCTATT-C--CAAGNAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAAT-TT----GCCACAAA-AAGTA-TA----TACTTGTG--T-CTT-TTTATTTGTAN-T--ATATA------TGCAAATAT---CTA-CT-AAAAACTAC-ATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGC-A-GGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTA--G--T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAAT----GGAAGATGCAGTTTN-A-GTTTA--AACATTATAAAA--ACATCGGGCGTAACTGCTGAGAGTATGAAAACTTCCTNNCCACCATGTANNGGG-TAAGGGGTG-----------T--GTCACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA--AA-TAAATGCGTTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCCGAC--AC-T-C-CCGAG-----GGTAA-TAGGTTAGTTTCCTTTAGACAAN-AC-TGAGGATAAATCACACTGCGCCGGAATATTGGTATCGTTGACCGAAACNAAGCTTTNGGATCNNCCATTTT-CTGC-GC-AACG-TGGCGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATTNTTGTATTATC-AAGAAGATGTGCCATAAGGGTATGTTGTGAGTTTGTTCGGCTTNAGGGACGTCANTAATAACTTNGATCAGTATTTTTCGTGCCNNCTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGAATA--A----AGTGGT-------GTTTT--GT-A--GGATT-----GCAC-T-A--A--GT-GA--ACAT---------CTCCAANGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-CT-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTATNAAAAATA-TGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
gi|1 : AAAAA-TCACCCCATTGTTTAATGAATTTGAACC----TAGGC----CTATCACTCAAT-GCA-A-----G-C-AGGC-ATAAA-CCTCT--TGGCT--T-CATCGCTTAT--------ACATTCA-GTAT--T-AACAGA-GATTT-AAC----TCGTTTAATCTT----GCTACAAA-AAGTA--A----TA-TTG-G--T-CTCATTTCCTTGTAT-T--AT-TA------TGCAAATATTCTCTAACTGAAAAACT-C-ATGTAATATATGAAACTACCCTCGTGTGA-GA--TCAGTAT--------TTAGGTAC------GC-A-GGCCCCCTAATCTA-A-TAAGACGTTCA--TGTT-GTG-TGGTATACTAGATCGTA--G--T---GAC-T-AG---CATGGTAAAGA-TGTCTGCTAATGCAT-TAT-ACAGGA-ATATTTAAT------AAGATGCAGTTTTGA-GTT----AACATTATAAAC--ACAGAGGGCGTAA-TGCTGAGAGTATTAAA--TTCCTTGCCACCATGTATT----TAAGGGGTG-----------T---TCACCTC-TGGATCCACATCAT------AGTATA-T--CACTACAAAACATTCGTTATAATTTGC-CTTAAATGTGCGCGATTT--ATCCTTTTCATGAGAAA-TAAATGCAT--AAGT-ACCAA-GATGCCGTTGA-TGCG--ATATGACA--TGTTAA---TTGCTCGAGTCCTAGCTTCCATTAATCAGAGTTACCAACCTGCTCCATTTT-C---CG-ATGC-TCCCTCTATCATCGAAGTGACGCCACGATGCATGTGCA-TGT---TCTGAC--AT-C-C-CCGGGTCCTGGGTAA-TAG--TAGTT--CGTGAGACAAGCAT-TGAGGATAAGTCACACTGCGCCGGAATAT--GTATCGTTAACCGAAACAAAGCTTT-GGATCGTCCATTTT-CTGC-GCCAGCGGTGACG--C------TTGG-ACAA--CGCAGCG-------CCC-T-AGCGA--TA-ATGC-GAGTG----TCAAG-AACGAT--AAA-CGA-AAA-TGTCCGA--------AAAATGAAA--CA---ATATATAAGACA-GA-----GGTTTTA-AAA----TGTTATATT---AAAACGT-----TCAA--ATAAG--TATTGTT--ATT-TC-A-GAAGATGTGCCATA--------TTGTA--TTTGTTCGGCTTTA----CGTCATTA-TAACTTGAAT--ATATT---CATACCCGCTTTGACTT-ATTATTTA-AGAGT--TAGATCAAGGGGAATA--ACGAAAGTG-T-------GTTTT--GT-A--G-ATT-----GCAT-C-A--G--CTAGA--ACAT----------TCCAA-GTCTCATTGAATATA-----------TGT-CATAT--------TGTGCTTTG-GA--AC-GAAGTGAAACTAAAATA----------AAAAA-A-CT-TAGG-CATAATTCCTAGGAA----GATATCTATG---AT-ACTTAAT-ATAAACAATA-TGGGA-TCAATTTCAAATGCAGTTTCAGGTGACACATGG-ACTTGTATACGAAAGAGCGAGTTTATGCCTAGATTTTTTACGTCTGG-ACCGTA
gi|10 : tataataaaataattaaaaaaaaaaaaaaatTTTA--CT-GTT-TTTA-AGA-T--T---TGAAAGAGAACACAA----AGTAGA-------GTTTT--GT-ATTGGATTAATT-GCAA-T-T--ATTAT-GA--AC------------TC---AGACTCAAAATATACA-----------TGTAC-TAT--------TTA-TTTTG-GAT-AC-GA--TGAAA----AATC----------AAACCCT-CT-TTTG-TATATTTGATTAAACTGTTAATAC-TACA---GTGACTT
gi|11 : GT-T-CATGAA-----TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-CT-TG-G-CATAATTGC-TAAAC-----ATAT-TATG---ATGACTTAG-TATGCAAAATA-TGGG-ATCA-------------TTTT--GTGA-ACATAG-ACTTAT-CACGATAATGCGATTTT-TGCCT-GA-TTTTTACG--TGG
gi|12 : tccaaAGCAAAAT--AAACA----------AAAATTA-CTGT--GGCACATTTGCT-AAAC----A-TAT-TGCG---ATAACTTATTT-TGCAAAATA-TGG-AATCA-------------TTTC-G-TGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGTCT-GA-TTTTTATG--TGGAACCCTACTTAA
gi|13 : TA-CT-T--GGCATATTT-CCTAAAC----A-TAT-TATG---ATAACTTA-TTATGCAAAATA-TTGGA-CCA-------------TTTC-G-TGA-ACATGG-ACTGAT-CACGAAAATGCGA-TTT-TGCCT-GA-TTTTTACG--TGGAACCGTACTTAAG
gi|14 : -TCACCC---TCCGCCAGGA--TTGAACC---CTGGTC----CT--CA-CTCAC-GTA-A-----GGCGAGGC-ATCAAACCCCT--TGACTA-T-C--AAAGAAT--------GTATT-A-AT-A--A-AGGA-AGGATTTTAAC----TC-CTTAAT-TT----G-CACAAA-AAca
gi|15 : ATGTCTGCTA-----T-TATGACAG-A-ATATTTAATTAATGGAAGATGCAGTTTC-A-GTTTAT-AACATTATATAATTACATCAGGCGTAACTGCTGAGAGTATGAAA
gi|16 : gCACCCCGTGG-TCCAC-TCAT----------TATA--CACTATAGAACATTCGTTATAATTT-T-CTAAA-TGTGG-CGATTTTTATCTTTT-CA
gi|17 : GCTCGA-TCTTAGCTTC--TTCATCA---TT-----C-TGCTCCATTT--C---TGCATGCCTCCCTCTATCaa
gi|18 : taCCT-GATTTT-TACG--TGGAACCGTACTTAA
gi|2 : AAAAT-TTACCC---TCCTCAAAGA--TTGAACTTCTCTCGCC----CT--CACCTCATAGCA-A-----GGCGAGAC-ACAAACCCCCT--TGACTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AACA-A-GATTTTAACG---TC-TTTAAT-TT----GCCACAAA-AAGTA-TA----TACTTGTG--T-CTT-TTTATTTGTAAAT--ATATA------TGCAAAT-T---CTA-A--AAAAACTAC-ATGTA-TATATGAACTTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGTTA-GGCT---CTATCTACAATAAGACGTCCG--TGTTT-TG-CGCAATCATAGATCGTA--GGGT---AAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----TATA-GATAG-AGATATTTAAT----GGAAGATGCAGTTTG-AAGTTTATTAACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAAACTTCTTTGC-AC-ATGTAGGGGGATGGGGGGGGGGGGGGGGGGGTCAGTCACCCCGTGG-TCCAC-T-AT------A---TA-AA-CACTATAAAACATTCGTTATAATTT-TTCTTAA--GTGC-CGATTTGTATCCTTT-CATGA--AA-TAAATGCATTAAAGTTACCAAAGATGC-GTTGACTGCGTGATATGACAACTGTT-TGTTTTGCTCGA-TCTTGGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATG-ATGTACAATGTCTCTCTGAC--AC-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACAAG-AC-TGAGGATAAATCACACTGCGCCGGAATATTGGTATCGTTGAACGAAAACAAGCTTTT-GATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCTAAGCGA--TA-GT-C-GAGTGAAATTCAAG--ACGAT--AAC-CGA-AAAATGTATGA--------AAATCGAAA--CAT--TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAAT-ATT----TATT-TCAAAGAAGA--TGCC-TA---------------TTTATTTG--TTTA---ACGTTAAT-ATAA---TGAT--ATATTTTTCCTACCCCTTTTG--CT-GTT-TTTATAGA-T--T---TCAAGGGGAATA--A----AGTAGT-------GTTTT--GT-AATAGATT-----GCAC-T-AAGA--GT-GA--ACAT---------CTCCAAAGTTTCATGAAATATA-----------TGT-C-CA---------TAT-TTTT--GA--AC-GAAGTGAAAT--AAATA----------AAAATTA-CT-T--G-CATATTTCCTTAAAC----ATTAT-TATA---ATGGCTTAGTTGTCAAAAATA-TGGGAATCA-------------TTTC-GGTGA-ACATGGTACTTAT-CAGAAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAGcagaa
gi|3 : CAAGGA--TTGAACT---CTTGAC----CT--C-TCTCAT-GCA-A-----GGCGAGGC-ACAACACCCCT--TGACTAT--C--CAAGAAT--------GTATT-A-AT-T--TTGACA-A-GATTTTAAC----TC-TTCAAT-TT----GC-ACAAA-AAGTAATAGATCTACTTGTG--T-CTT-TT-ATTTGTAT-T--ATATA------TGCAAAT-T---CTA-CT-AGAAACTAC-ATGTAATATATGAAACTACCCTCTTATGA-GA--TC-GTAT--------TTAGGTAC---TCAATTA-GGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TG-AATCATAGATCGTA--GG-T---AAC-T-AGA-TCATTGTAAGGA-TGTCTGCTA-----T-TATGACAG-A-ATATTTAAT----GGAAGATGCAGTTTG-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTC-TTGCCAC-ATGTA---------GGGG-G-----------T--GTCACCCCGTGG-TCCAC-TCATTAATTTA---TA-ATACACTATAAAATATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA--AAATAAATGCGTTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATACATGTAC-ATGTCTCTCTGAC--ACTT-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACAAT-ACTTGAGGATAAATCACt
gi|4 : aCATTTTGCTGAAGC-AACA-TGAAGT-CCTTTAGTTAA-A--AAGCGCAGCAGAATCCATCCTT-CGCGAATTACAT-CAGAGTGAAAAT--AGCAAAGATAGAACATGATAAAACATACGATGTAGCGTAAATCGTAAGGCAATGTT---T-G--CCTGAGACACGGTTTTATAGAATTCTGTTATATT-----AACTTCTTTCTCAAAGAAAAAATCATTCTTGTATTATC--AGAAGA--TGCC-TAAGGGTATGTT-TGAGTTTGT-----TTAAGGGACGTTAGTAATAA--TTG-TCAGTATTTTTCGTGCCGCTATTG--CTGGTT-TTTTCAGA-TTCT---TCA--GGGGATA--A----AAAGGTGAGGATGGTTTTAGGTAA--AGATTATGCGGCACATGA--A--GA-GATGATATTGCTTTATGCTCC-ATGTTTTTTCAATTATGACGATTTGGATTGT-C-CATAGGTTGTGTAT-CTTTGAGAGTACAGAAGTGAACT--AATTATGCAACTTTGAACATAAGCT-T--G--ATGTTT--TTACAT----AATAC-TTTGAGCATGA--TAGATATTAGTAATATTGGGCATCA-------------TTTC-
gi|5 : GAACC---CTGGTCTGGTCT--CACTTCATAGCACATTTTTGGCG--GCGATAAAGCTATTATTGGCTATTGC--CAGGGGTTATCATAGATGTC-T-GT-C--T-GAGC-A-GATTTTAACCTCTTC-TTTTAC-TCTCTCGCCACAAACAAGTT-TA----T--TTGTAGATACTT-ATCATCACTAA-TGCATATAATCTGATGAAAGTAT---CTA-CT-AACATCTACCATGTAATATATGAAACT-CCCTCTTGTGACGAGTTCTGTATTTATTTTCTTAGGTACGGATCA-C-ACGGCC---TAATTAACATTCAGACG-TCAACTGTTTGTGTTGGAATCATAAGTCGTAACG--TGTGGACATAAGAGTCACTGTAAGG-ATGTCT
gi|6 : tataatacaataaattaaagaagcataaattaaatataaaaaaaacatccacatttcagggtttgtatgaagaactgtgTATCCTTT-ACTGA--AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATG--TTGCTCGA-TCTTGGCTTCA-TTCATCG---TTACCAAC-TGCTCCATTT--------------TCCGTCTATCATC--AGTGACGCCA-GATGCATGTAC-ATGTCTCTCTGAC--AC-TCC-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTTGACAAA-ACTTGAGGATAAATCACACTGCGCCGGAATATT-GTATCGTTGACCGAAAC-AAGCTTTTGGATCCGCCATATT-CTGC-GC--AC--TGGCGT-C------CTGAGA--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-T-GAGTGAAATTCAAG-AACGAT--AAC-CG--AAAATGTATGA--------AAATCGAAA--CA---TT---TAG--C--AA-----GGTTTT---AAA---TGTTATATTTTAAAAACTT-------AA--AAAAA
gi|7 : taTCCATTTGCCAGGTATATGT-TCCTCCTATCTTC--AGTGACGTCA-GATGCCAGT-CAATGTCTTCACGCCAAAC-T-CACCGAG-----GTTAGCTAGGGTCGTTGACTTTGGATA
gi|7 : ttT-CCGC-GC-CA-A-TAGCGTGC------TTGACA--A--CGCAGCG-------TCCCT-ATCGA--TC-AT-C-GAGTGAATTTCAAG-AAttttgaaaagctttgaaggtatctagagcacgtcctcatcgatcggaataatgtcttacacggtgcctcaaatatcaaaacaaggtatccgcgccaatagcgtgcttgacaacgcagcgtccctatcgatcatcgagtgaatttcaagaatat
gi|8 : tttccatttgccaggtatatgttcctcctatcttcagtgacgtcagatgccagtcaatgtcttcacgccaaactcaccgaggttagctagggtcgttgactttggatattttgaaaagctttgaaggtatctagagcacgtcctcatcgatcggaataatgtcttacacggtgcctcaaatatcaaaacaaggtaCAAGGA--TCGAACC---CTGGTC----TT--C-TTTCTT-GTT-A-----GCAGTGGA-ACGAAACCCCT--TAGCCAT--C--CAAGTAT--------G-GAT-ATAT-TGTT-ATAA-G-GATTTTAAC----TC-CTAAAT-T-----GC-ACAAA-AAGTA--A----TATTTGTG--T-CTT-TT-ATTTGTAT-T--ATATA--------CAAAT-T---CCA-CT-AAAAACTAC-ATGTAATAtat
gi|9 : acagAAAATATTACCC---ACCCCAAGGT--TTGAACT---CCTGCC----CT--CAC-TCGT-GCA-A-----GGCGAGGC-ACAAAATCCCT--TGACTA-T-C--CAAGAAT--------GTGAT-A-ATCT--T-AAGA-A-GATTTTAAC----TC-TTTAAT-AT----G-CACAAA-AAGTA--A----TACTTGAG--T-C-T-TTTATTTGTAT-T--ATATA------TGCAAAT
Alignments
lowQualScore : 111111111111111111111111111111 1111111111111111111111111111111111111111111111
lowQualScore : 1 111 111 1111 111 1 11111 111 22222222 111111 1111 1111111111 2222222 11111 22222 1111 1 11 2 33333333 222222222 111 2 11 1 3333333 111 11 11 2222222 111 2222 1111 1 11 11 1 1 000000000000000000000000000000 1 1 1 6666666666666666 111 11 1 1 1 1 11 11 11 111 222222 1 11 11 111111 22222 22222222 1111 11 11 1 11 2222 33333333 1 222 222222 2222222 2222222 11 11 1 11 33333333 11 55555555555555555555555 11 2222 2222 222222 11 1111111 33333 11 1 3333333 333333333 33333 11 22 1111 11 1 1 1 22222222 11 33333333333333333 11 22222 0000000000000000000000000000000000000000000000 5555555555555555555555555555 11 2222222222 1111 1 222222 111 11 3333333333333 111 1 1
lowQualScore : 0 777 0 99 000 1 1 2222 77 000 1 5 44444 0 1 5 3 77 999 77 0 00000000 0 666 666666 1 5 5 7777 5 3333333333 5 7777777 5 3 99 6 6 9 66666 99 6 3 6 55555 1111 0 8 0 3 0 33 0 66666666 888888888 777 2 0 3 33 55 0 8 1111111 111 33 33 6666666 55 111 1111 2 2222 3 0 33 2 66 2 6 3 222222222222222222222222222222 0 2 0 0 2 2222222222222222 444 33 0 9 8 0 3 3 3 0 0 2 3 11 3 2 88 8 99 444 0 8 555555 5 0 11 8 3 11 444444 8 00000 8 0 5 99999999 0 0 7777 33 33 0 33 1111 66666666 0 0 99 2 1 8 8 88 222 88 333333 0000000 6666666 3 8 11 8 999 0 22 88 33 0 33 55 66666666 33 99999999999999999999999 33 0000 0000 888888 33 9999999 00000 88 3 2222222 0 555555555 55555 1 44 00 3333 7 3 33 0 0 9 33333333 33 33 44444444444444444 33 55555 2222222222222222222222222222222222222222222222 1 9999999999999999999999999999 8 8 99 8 0 9999 9999999999 3 5 77 5 5555 1 11 111111 5 1 000 1 9999999 1 00 6666666666666 666 8 8 8 6 8 6 5 99 0
lowQualScore : . ... . .. ... . . .... .. ... . . ..... . . . . .. ... .. . ........ . ... ...... . . . .... . .......... . ....... . . .. . . . ..... .. . . . ..... .... . . . . . .. . ........ ......... ... . . . .. .. . . ....... ... .. .. ....... .. ... .... . .... . . .. . .. . . . .............................. . . . . . ................ ... .. . . . . . . . . . . . .. . . .. . .. ... . . ...... . . .. . . .. ...... . ..... . . . ........ . . .... .. .. . .. .... ........ . . .. . . . . .. ... .. ...... ....... ....... . . .. . ... . .. .. .. . .. .. ........ .. ....................... .. .... .... ...... .. ....... ..... .. . ....... . ......... ..... . .. .. .... . . .. . . . ........ .. .. ................. .. ..... .............................................. . ............................ . . .. . . .... .......... . . .. . .... . .. ...... . . ... . ....... . .. ............. ... . . . . . . . .. .
lowQualScore : 0 555 8 22 000 0 0 1111 99 777 4 7 33333 7 7 7 6 99 111 99 6 77777777 1 111 666666 0 7 7 9999 7 6666666666 7 3333333 2 5 22 7 7 8 77777 22 7 2 7 44444 8888 8 0 8 2 0 88 0 22222222 222222222 555 5 0 2 88 88 0 8 0000000 000 22 88 0000000 88 000 2222 5 0000 2 0 88 5 77 0 7 3 333333333333333333333333333333 0 5 0 0 5 8888888888888888 888 22 0 2 0 0 2 2 2 0 0 5 2 88 2 5 55 0 00 000 8 0 888888 2 8 00 0 8 44 222222 0 00000 0 6 6 00000000 6 8 0000 88 88 0 22 2222 22222222 2 0 55 5 0 0 0 88 444 88 000000 0000000 0000000 2 0 00 0 222 8 00 88 88 0 22 22 22222222 88 22222222222222222222222 22 8888 8888 222222 88 7777777 00000 33 3 3333333 7 000000000 77777 0 77 77 7777 3 7 88 0 0 0 22222222 55 88 22222222222222222 88 00000 5555555555555555555555555555555555555555555555 0 9999999999999999999999999999 0 0 00 0 7 8888 2222222222 9 7 99 7 0000 4 99 000000 7 4 000 7 7777777 0 55 7777777777777 777 0 0 0 0 0 7 5 22 8
consensus : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACCTCAT-GCA-A-----GGCGAGGC-ACAAAACCCCT--TGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAAT-TT----GCCACAAA-AAGTA-TA----TACTTGTG--T-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAATAT---CTA-CT-AAAAACTAC-ATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AACG-TGACGT-C------TTGA-A--A--CGCAG-------CGCCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATTNTTATTTC-A--AGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGA--ATAA----AGTGGT-------GTTTT--GT-A-TAGATTA-----CG-CA-CTA--A--GTGA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTAT--GCAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
Reference ( family-4263 ) : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACCTCAT-GCA-A-----GGCGAGGC-ACAAAACCCCT--TGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAAT-TT----GCCACAAA-AAGTA-TA----TACTTGTG--T-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAATAT---CTA-CT-AAAAACTAC-ATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------TG-GGGGGG------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AACA-TGACGT-C------TTGA-A--A--CGCAG-------CGCCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATTTTTATTTC-A--AGAAGATG--CC-TA----TT-TGTTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGA--ATAA----AGTGGT-------GTTTT--GT-A-TGGATTA-----CG-CA-CTA--A--GTGA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTAT--GNAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
gi|1 : AAAAA-TCACCCCATTGTTTAATGAATTTGAACC----TAGGC----CTATCACTCAAT-GCA-A-----G-C-AGGC-ATAAA-CCTCT--TGGCT--T-CATCGCTTAT--------ACATTCA-GTAT--T-AACAGA-GATTT-AAC----TCGTTTAATCTT----GCTACAAA-AAGTA--A----TA-TTG-G--T-CTCATTTCCT-----TG--TAT-TAT-T-ATGCAAATATTCTCTAACTGAAAAACT-C-ATGTAATATATGAAACTACCCTCGTGTGA-GA--TCAGTAT--------TTAGGTAC------GC-AGGCCCCCTAATCTA-A-TAAGACGTTCA--TGTT-GTG-TGGTATACTAGATCGTAG---T---GAC-T-AG---CATGGTAAAGA-TGTCTGCTAATGCAT-TAT-ACAGGA-ATATTTAA----T--AAGATGCAGTTTTGA-GTT----AACATTATAAAC--ACAGAGGGCGTAA-TGCTGAGAGTATTAAA--TTCCTTGCCACCATGTA------TTTAAGGGG------------T--GTTCACCTC-TGGATCCACATCAT------AGTATA-T--CACTACAAAACATTCGTTATAATTTGC-CTTAAATGTGCGCGATTT--ATCCTTTTCATGAGAAATAAATGCAT--AAGT-ACCAA-GATGCCGTTGA-TGCG--ATATGACA--TGTTAA---TTGCTCGAGTCCTAGCTTCCATTAATCAGAGTTACCAACCTGCTCCATTTT-C---CG-ATGC-TCCCTCTATCATCGAAGTGACGCCACGATGCATGTGCA-TGT---TCTGACA--T-C-C-CCGGGTCCTGGGTAA-TAG--TAGTT--CGTGAGACA--------AGCATTGAGGATA----AGTCACA--CTG--CG-CCGGAATAT--GTAT----CGTTA--------ACCG-AAACAAAGCTTTGGATCGTCCATTTT-CTGC-GCCAGCGGTGACG--C------TTGG-ACAA--CGCAG-------CGCCC-T-AGCGA--TA-ATGC-GAGTG----TCAAG-AACGAT--AAA-CGA-AAA-TGTCCGA--------AAAATGAAA--CA---ATATATAAGACA-GA-----GGTTTTA-AAA----TGTTATATT---AAAACGT-----TCAA--ATAAG--TATTGTTATTTC-A---GAAGATGTGCCATA----TTGTATTT--GTTCGGCTTTA-----CGTCATTA-TAACTTGAATA-TATT---CATACCCGCTTTGACTT-ATTATTTA-AGAGT--TAGATCAAGGGGA--ATAACGAAAGTG-T-------GTTTT--GT-A---GATTG-----CATCAGCTA-------GA--ACAT----------TCCAA-GTCTCATTGAATATA-----------TGT-CATAT--------TGTGCTTTG-GA--AC-GAAGTGAAACTAAAATA----------AAAAA-A-C--T-TAGG-CATAATTCCTAGGAA----GATATCTATG---AT-ACTTAAT-AT--AAACAATATGGGA-TCAATTTCAAATGCAGTTTCAGGTGACACATGG-ACTTGTATACGAAAGAGCGAGTTTATGCCTAGATTTTTTACGTCTGG-ACCGTA
gi|10 : tataataaaataattaaaaaaaaaaaaaaatTTTA--CT-GTT-TTTA-AGA-T--T---TGAAAGAGAACACAA----AGTAGA-------GTTTT--GT-ATTGGATTAAT---TG-CA-ATT--ATTATGA--AC-T---------C-----AGACTCAAAATATACA-----------TGTAC-TAT--------TTA-TTTTG-GAT-AC-GA--TGAA----AAATC----------AAACCCT-CTTT-T--G-TATATTTGATTAAACTGTTAATAC-TACA---GTGACTT
gi|11 : GT-T-CATGAA-----TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-TG-G-CATAATTGC-TAAAC-----ATAT-TATG---ATGACTTAG-TAT--GCAAAATATGGG-ATCA-------------TTTT--GTGA-ACATAG-ACTTAT-CACGATAATGCGATTTT-TGCCT-GA-TTTTTACG--TGG
gi|12 : tccaaAGCAAAAT--AAACA----------AAAATTA-C--TGT--GGCACATTTGCT-AAAC----A-TAT-TGCG---ATAACTTATTT-T--GCAAAATATGG-AATCA-------------TTTC-G-TGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGTCT-GA-TTTTTATG--TGGAACCCTACTTAA
gi|13 : TA-C--T-T--GGCATATTT-CCTAAAC----A-TAT-TATG---ATAACTTA-TTAT--GCAAAATATTGGA-CCA-------------TTTC-G-TGA-ACATGG-ACTGAT-CACGAAAATGCGA-TTT-TGCCT-GA-TTTTTACG--TGGAACCGTACTTAAG
gi|14 : -TCACCC---TCCGCCAGGA--TTGAACC---CTGGTC----CT--CA-CTCAC-GTA-A-----GGCGAGGC-ATCAAACCCCT--TGACTA-T-C--AAAGAAT--------GTATT-A-AT-A--A-AGGA-AGGATTTTAAC----TC-CTTAAT-TT----G-CACAAA-AAca
gi|15 : ATGTCTGCTA-----T-TATGACAG-A-ATATTTAATTAATGGAAGATGCAGTTTC-A-GTTTAT-AACATTATATAATTACATCAGGCGTAACTGCTGAGAGTATGAAA-
gi|16 : g-CACCCCGTGG-TCCAC-TCAT----------TATA--CACTATAGAACATTCGTTATAATTT-T-CTAAA-TGTGG-CGATTTTTATCTTTT-CA
gi|17 : GCTCGA-TCTTAGCTTC--TTCATCA---TT-----C-TGCTCCATTT--C---TGCATGCCTCCCTCTATCaa
gi|18 : taCCT-GATTTT-TACG--TGGAACCGTACTTAA
gi|2 : AAAAT-TTACCC---TCCTCAAAGA--TTGAACTTCTCTCGCC----CT--CACCTCATAGCA-A-----GGCGAGAC-ACAAACCCCCT--TGACTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AACA-A-GATTTTAACG---TC-TTTAAT-TT----GCCACAAA-AAGTA-TA----TACTTGTG--T-CTT-TTTATT-----TG--TAAATATAT-ATGCAAAT-T---CTA-A--AAAAACTAC-ATGTA-TATATGAACTTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGTTAGGCT---CTATCTACAATAAGACGTCCG--TGTTT-TG-CGCAATCATAGATCGTAG-GGT---AAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----TATA-GATAG-AGATATTTAA----TGGAAGATGCAGTTTG-AAGTTTATTAACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAAACTTCTTTGC-AC-ATGTAGGGGGATG-GGGGGGGGGGGGGGGGGGTCAGT-CACCCCGTGG-TCCAC-T-AT------A---TA-AA-CACTATAAAACATTCGTTATAATTT-TTCTTAA--GTGC-CGATTTGTATCCTTT-CATGA-AA-TAAATGCATTAAAGTTACCAAAGATGC-GTTGACTGCGTGATATGACAACTGTT-TGTTTTGCTCGA-TCTTGGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATG-ATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGAC-TGAGGATA----AATCACA--CTG--CG-CCGGAATATTGGTAT----CGTTG--------AACGAAAACAAGCTTTT-GATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAG-------CGCCCCTAAGCGA--TA-GT-C-GAGTGAAATTCAAG--ACGAT--AAC-CGA-AAAATGTATGA--------AAATCGAAA--CAT--TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAAT-A--TTTATTTCAA--AGAAGATG--CC-TA----TT-TATTT------G--TTTA----ACGTTAAT-ATAA--TGA-TA-TATTTTTCCTACCCCTTTTG--CT-GTT-TTTATAGA-T--T---TCAAGGGGA--ATAA----AGTAGT-------GTTTT--GTAA-TAGATT-------G-CA-CTAAGA--GTGA--ACAT---------CTCCAAAGTTTCATGAAATATA-----------TGT-C-CA---------TAT-TTTT--GA--AC-GAAGTGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTCCTTAAAC----ATTAT-TATA---ATGGCTTAGTTGT--CAAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGGTACTTAT-CAGAAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAGcagaa
gi|3 : CAAGGA--TTGAACT---CTTGAC----CT--C-TCTCAT-GCA-A-----GGCGAGGC-ACAACACCCCT--TGACTAT--C--CAAGAAT--------GTATT-A-AT-T--TTGACA-A-GATTTTAAC----TC-TTCAAT-TT----GC-ACAAA-AAGTAATAGATCTACTTGTG--T-CTT-TT-ATT-----TG--TAT-TATAT-ATGCAAAT-T---CTA-CT-AGAAACTAC-ATGTAATATATGAAACTACCCTCTTATGA-GA--TC-GTAT--------TTAGGTAC---TCAATTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TG-AATCATAGATCGTAG-G-T---AAC-T-AGA-TCATTGTAAGGA-TGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTG-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTC-TTGCCAC-ATGTA----------GGGGG------------T--GT-CACCCCGTGG-TCCAC-TCATTAATTTA---TA-ATACACTATAAAATATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCGTTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATACATGTAC-ATGTCTCTCTGACA--CTT-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------ATACTTGAGGATA----AATCACt
gi|4 : aCATTTTGCTGAAGC-AACA-TGAAGT-CCTTTAGTTAA-A--AAGCGCAGCAGAATCCATCCTT-CGCGAATTACAT-CAGAGTGAAAAT--AGCAAAGATAGAACATGATAAAACATACGATGTAGCGTAAATCGTAAGGCAATGTT---T-G--CCTGAGACACGGTTTTATAGAATTCTGTTATATT-----AACTTCTTTCTCAAAGAAAAAATCATTCTTGTATT-ATCAGAAGATG--CC-TAAGGGTA-TGTTTGAGTTTG--TTTAAGGGACGTTAGTAATAA-TTGT-CAGTATTTTTCGTGCCGCTATTG--CTGGTT-TTTTCAGA-TTCT---TCA--GGGG--ATAA----AAAGGTGAGGATGGTTTTAGGT-A-AAGATTATGCGGCA-CA-TGA--A--GAGATGATATTGCTTTATGCTCC-ATGTTTTTTCAATTATGACGATTTGGATTGT-C-CATAGGTTGTGTAT-CTTTGAGAGTACAGAAGTGAACT--AATTATGCAACTTTGAACATAAGC--T-T--G--ATGTTT--TTACAT----AATAC-TTTGAGCATGA--TAGATATTAGTAATAT-TGGGCATCA-------------TTTC-
gi|5 : GAACC---CTGGTCTGGTCT--CACTTCATAGCACATTTTTGGCG--GCGATAAAGCTATTATTGGCTATTGC--CAGGGGTTATCATAGATGTC-T-GT-C--T-GAGC-A-GATTTTAACCTCTTC-TTTTAC-TCTCTCGCCACAAACAAGTT-TA----T--TTGTAGATACTT-ATCATCACTAATGCATAT-AATCTGATGAAAGTAT---CTA-CT-AACATCTACCATGTAATATATGAAACT-CCCTCTTGTGACGAGTTCTGTATTTATTTTCTTAGGTACGGATCA-CACGGCC---TAATTAACATTCAGACG-TCAACTGTTTGTGTTGGAATCATAAGTCGTAACG-TGTGGACATAAGAGTCACTGTAAGG-ATGTCT
gi|6 : tataatacaataaattaaagaagcataaattaaatataaaaaaaacatccacatttcagggtttgtatgaagaactgtgTATCCTTT-ACTGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTGGCTTCA-TTCATCG---TTACCAAC-TGCTCCATTT--------------TCCGTCTATCATC--AGTGACGCCA-GATGCATGTAC-ATGTCTCTCTGACA--C-TCC-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTTGACA--------AAACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATATT-CTGC-GC--AC--TGGCGT-C------CTGAGA--A--CGCAG-------CGCCCCT-AGCGA--TA-AT-T-GAGTGAAATTCAAG-AACGAT--AAC-CG--AAAATGTATGA--------AAATCGAAA--CA---TT---TAG--C--AA-----GGTTTT---AAA---TGTTATATTTTAAAAACTT-------AA--AAAAA
gi|7 : taTCCATTTGCCAGGTATATGT-TCCTCCTATCTTC--AGTGACGTCA-GATGCCAGT-CAATGTCTTCACGCCAAAC-T-CACCGAG-----GTTAGCTAGGGTCGTTGACTTTGGATATTTTGAAAAGCTTTGAAGGTATCTAGAGCACGTCCTCATCGATCGGAATAAT-GTCTTACACGGTGCCTCAAATATCA-AAACAAG-----GTATCCGC---------GC--C-AATA---GCGTGC------TTGACA--A--CGCAG-------CGTCCCT-ATCGA--TC-AT-C-GAGTGAATTTCAAG-AA
gi|8 : ttCAAGGA--TCGAACC---CTGGTC----TT--C-TTTCTT-GTT-A-----GCAGTGGA-ACGAAACCCCT--TAGCCAT--C--CAAGTAT--------G-GAT-ATAT-TGTT-ATAA-G-GATTTTAAC----TC-CTAAAT-T-----GC-ACAAA-AAGTA--A----TATTTGTG--T-CTT-TT-ATT-----TG--TAT-TATAT-A--CAAAT-T---CCA-CT-AAAAACTAC-ATGTAATAtat
gi|9 : acagAAAATATTACCC---ACCCCAAGGT--TTGAACT---CCTGCC----CT--CAC-TCGT-GCA-A-----GGCGAGGC-ACAAAATCCCT--TGACTA-T-C--CAAGAAT--------GTGAT-A-ATCT--T-AAGA-A-GATTTTAAC----TC-TTTAAT-AT----G-CACAAA-AAGTA--A----TACTTGAG--T-C-T-TTTATT-----TG--TAT-TATAT-ATGCAAAT
Alignments
lowQualScore : 1111111111111111111111111111111 1111111111111111111111111111111111111111111111
lowQualScore : 1 111 111 1111 111 1 11111 111 22222222 111111 1111 1111111111 2222222 11111 22222 1111 1 11 2 33333333 222222222 111 2 11 1 3333333 111 11 11 2222222 111 2222 1111 1 11 11 1 1 0000000000000000000000000000000 1 1 1 6666666666666666 111 11 1 1 1 1 11 11 11 111 222222 1 11 11 111111 22222 22222222 1111 11 11 1 11 2222 33333333 1 222222 222222 2222222 2222222 11 11 1 11 33333333 11 55555555555555555555555 11 2222 2222 222222 11 111 11 33333 11 1 3333333 333333333 33333 11 22 1111 11 1 1 1 22222222 11 33333333333333333 11 22222 0000000000000000000000000000000000000000000000 5555555555555555555555555555 11 2222222222 1111 1 222222 111 11 3333333333333 111 1 1
lowQualScore : 0 777 0 99 000 1 1 2222 77 000 1 5 44444 0 1 5 3 77 999 77 0 00000000 0 666 666666 1 5 5 7777 5 3333333333 5 7777777 5 3 99 6 6 9 66666 99 6 3 6 55555 1111 0 8 0 3 0 33 0 66666666 888888888 777 2 0 3 33 55 0 8 1111111 111 33 33 6666666 55 111 1111 2 2222 3 0 33 2 66 2 6 3 5555555555555555555555555555555 0 2 0 0 2 2222222222222222 444 33 0 9 8 0 3 3 3 0 0 2 3 11 3 2 88 8 99 444 0 8 555555 5 0 11 8 3 11 444444 8 00000 8 0 5 99999999 0 0 7777 33 33 0 33 1111 66666666 0 0 99 2 1 8 8 999999 88 333333 0000000 6666666 3 8 11 8 999 0 22 88 33 0 33 55 66666666 33 99999999999999999999999 33 0000 0000 888888 33 888 33 00000 88 3 2222222 555555555 55555 1 44 00 3333 7 3 33 0 0 9 33333333 33 33 44444444444444444 33 11111 2222222222222222222222222222222222222222222222 1 9999999999999999999999999999 8 8 99 8 0 9999 9999999999 3 5 77 5 5555 1 11 111111 5 1 000 1 9999999 1 00 6666666666666 666 8 8 8 6 8 6 5 99 0
lowQualScore : . ... . .. ... . . .... .. ... . . ..... . . . . .. ... .. . ........ . ... ...... . . . .... . .......... . ....... . . .. . . . ..... .. . . . ..... .... . . . . . .. . ........ ......... ... . . . .. .. . . ....... ... .. .. ....... .. ... .... . .... . . .. . .. . . . ............................... . . . . . ................ ... .. . . . . . . . . . . . .. . . .. . .. ... . . ...... . . .. . . .. ...... . ..... . . . ........ . . .... .. .. . .. .... ........ . . .. . . . . ...... .. ...... ....... ....... . . .. . ... . .. .. .. . .. .. ........ .. ....................... .. .... .... ...... .. ... .. ..... .. . ....... ......... ..... . .. .. .... . . .. . . . ........ .. .. ................. .. ..... .............................................. . ............................ . . .. . . .... .......... . . .. . .... . .. ...... . . ... . ....... . .. ............. ... . . . . . . . .. .
lowQualScore : 0 555 8 22 000 0 0 1111 99 777 4 7 33333 7 7 7 6 99 111 99 6 77777777 1 111 666666 0 7 7 9999 7 6666666666 7 3333333 2 5 22 7 7 8 77777 22 7 2 7 44444 8888 8 0 8 2 0 88 0 22222222 222222222 555 5 0 2 88 88 0 8 0000000 000 22 88 0000000 88 000 2222 5 0000 2 0 88 5 77 0 7 3 7777777777777777777777777777777 0 5 0 0 5 8888888888888888 888 22 0 2 0 0 2 2 2 0 0 5 2 88 2 5 55 0 00 000 8 0 888888 2 8 00 0 8 44 222222 0 00000 0 6 6 00000000 6 8 0000 88 88 0 22 2222 22222222 2 0 55 5 0 0 0 000000 88 000000 0000000 0000000 2 0 00 0 222 8 00 88 88 0 22 22 22222222 88 22222222222222222222222 22 8888 8888 222222 88 333 00 00000 33 3 3333333 000000000 77777 0 77 77 7777 3 7 88 0 0 0 22222222 55 88 22222222222222222 88 55555 5555555555555555555555555555555555555555555555 0 9999999999999999999999999999 0 0 00 0 7 8888 2222222222 9 7 99 7 0000 4 99 000000 7 4 000 7 7777777 0 55 7777777777777 777 0 0 0 0 0 7 5 22 8
consensus : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACCTCAT-GCA-A-----GGCGAGGC-ACAAAACCCCT--TGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAAT-TT----GCCACAAA-AAGTA-TA----TACTTGTG--T-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAATAT---CTA-CT-AAAAACTAC-ATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATT-TTATTTC-A--AGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGA--ATAA----AGTGGT-------GTTTT--GT-A-TAGATTA-----CG-CA-CTA--A--GTGA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTAT--GCAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
Reference ( family-4263 ) : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACCTCAT-GCA-A-----GGCGAGGC-ACAAAACCCCT--TGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAAT-TT----GCCACAAA-AAGTA-TA----TACTTGTG--T-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAATAT---CTA-CT-AAAAACTAC-ATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AACG-TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATTNTTATTTC-A--AGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGA--ATAA----AGTGGT-------GTTTT--GT-A-TAGATTA-----CG-CA-CTA--A--GTGA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTAT--GCAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
gi|1 : AAAAA-TCACCCCATTGTTTAATGAATTTGAACC----TAGGC----CTATCACTCAAT-GCA-A-----G-C-AGGC-ATAAA-CCTCT--TGGCT--T-CATCGCTTAT--------ACATTCA-GTAT--T-AACAGA-GATTT-AAC----TCGTTTAATCTT----GCTACAAA-AAGTA--A----TA-TTG-G--T-CTCATTTCCT-----TG--TAT-TAT-T-ATGCAAATATTCTCTAACTGAAAAACT-C-ATGTAATATATGAAACTACCCTCGTGTGA-GA--TCAGTAT--------TTAGGTAC------GC-AGGCCCCCTAATCTA-A-TAAGACGTTCA--TGTT-GTG-TGGTATACTAGATCGTAG---T---GAC-T-AG---CATGGTAAAGA-TGTCTGCTAATGCAT-TAT-ACAGGA-ATATTTAA----T--AAGATGCAGTTTTGA-GTT----AACATTATAAAC--ACAGAGGGCGTAA-TGCTGAGAGTATTAAA--TTCCTTGCCACCATGTA------TTTAAGGGG-------------T--GTTCACCTC-TGGATCCACATCAT------AGTATA-T--CACTACAAAACATTCGTTATAATTTGC-CTTAAATGTGCGCGATTT--ATCCTTTTCATGAGAAATAAATGCAT--AAGT-ACCAA-GATGCCGTTGA-TGCG--ATATGACA--TGTTAA---TTGCTCGAGTCCTAGCTTCCATTAATCAGAGTTACCAACCTGCTCCATTTT-C---CG-ATGC-TCCCTCTATCATCGAAGTGACGCCACGATGCATGTGCA-TGT---TCTGACA--T-C-C-CCGGGTCCTGGGTAA-TAG--TAGTT--CGTGAGACA--------AGCATTGAGGATA----AGTCACA--CTG--CG-CCGGAATAT--GTAT----CGTTA--------ACCG-AAACAAAGCTTTGGATCGTCCATTTT-CTGC-GCCAGCGGTGACG--C------TTGG-ACAA--CGCAGCG-------CCC-T-AGCGA--TA-ATGC-GAGTG----TCAAG-AACGAT--AAA-CGA-AAA-TGTCCGA--------AAAATGAAA--CA---ATATATAAGACA-GA-----GGTTTTA-AAA----TGTTATATT---AAAACGT-----TCAA--ATAAG--TATTGTTATTTC-A---GAAGATGTGCCATA----TTGTATTT--GTTCGGCTTTA-----CGTCATTA-TAACTTGAATA-TATT---CATACCCGCTTTGACTT-ATTATTTA-AGAGT--TAGATCAAGGGGA--ATAACGAAAGTG-T-------GTTTT--GT-A---GATTG-----CATCAGCTA-------GA--ACAT----------TCCAA-GTCTCATTGAATATA-----------TGT-CATAT--------TGTGCTTTG-GA--AC-GAAGTGAAACTAAAATA----------AAAAA-A-C--T-TAGG-CATAATTCCTAGGAA----GATATCTATG---AT-ACTTAAT-AT--AAACAATATGGGA-TCAATTTCAAATGCAGTTTCAGGTGACACATGG-ACTTGTATACGAAAGAGCGAGTTTATGCCTAGATTTTTTACGTCTGG-ACCGTA
gi|10 : tataataaaataattaaaaaaaaaaaaaaatTTTA--CT-GTT-TTTA-AGA-T--T---TGAAAGAGAACACAA----AGTAGA-------GTTTT--GT-ATTGGATTAAT---TG-CA-ATT--ATTATGA--AC-T---------C-----AGACTCAAAATATACA-----------TGTAC-TAT--------TTA-TTTTG-GAT-AC-GA--TGAA----AAATC----------AAACCCT-CTTT-T--G-TATATTTGATTAAACTGTTAATAC-TACA---GTGACTT
gi|11 : GT-T-CATGAA-----TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-TG-G-CATAATTGC-TAAAC-----ATAT-TATG---ATGACTTAG-TAT--GCAAAATATGGG-ATCA-------------TTTT--GTGA-ACATAG-ACTTAT-CACGATAATGCGATTTT-TGCCT-GA-TTTTTACG--TGG
gi|12 : tccaaAGCAAAAT--AAACA----------AAAATTA-C--TGT--GGCACATTTGCT-AAAC----A-TAT-TGCG---ATAACTTATTT-T--GCAAAATATGG-AATCA-------------TTTC-G-TGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGTCT-GA-TTTTTATG--TGGAACCCTACTTAA
gi|13 : TA-C--T-T--GGCATATTT-CCTAAAC----A-TAT-TATG---ATAACTTA-TTAT--GCAAAATATTGGA-CCA-------------TTTC-G-TGA-ACATGG-ACTGAT-CACGAAAATGCGA-TTT-TGCCT-GA-TTTTTACG--TGGAACCGTACTTAAG
gi|14 : -TCACCC---TCCGCCAGGA--TTGAACC---CTGGTC----CT--CA-CTCAC-GTA-A-----GGCGAGGC-ATCAAACCCCT--TGACTA-T-C--AAAGAAT--------GTATT-A-AT-A--A-AGGA-AGGATTTTAAC----TC-CTTAAT-TT----G-CACAAA-AAca
gi|15 : ATGTCTGCTA-----T-TATGACAG-A-ATATTTAATTAATGGAAGATGCAGTTTC-A-GTTTAT-AACATTATATAATTACATCAGGCGTAACTGCTGAGAGTATGAAA-
gi|16 : g-CACCCCGTGG-TCCAC-TCAT----------TATA--CACTATAGAACATTCGTTATAATTT-T-CTAAA-TGTGG-CGATTTTTATCTTTT-CA
gi|17 : GCTCGA-TCTTAGCTTC--TTCATCA---TT-----C-TGCTCCATTT--C---TGCATGCCTCCCTCTATCaa
gi|18 : taCCT-GATTTT-TACG--TGGAACCGTACTTAA
gi|2 : AAAAT-TTACCC---TCCTCAAAGA--TTGAACTTCTCTCGCC----CT--CACCTCATAGCA-A-----GGCGAGAC-ACAAACCCCCT--TGACTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AACA-A-GATTTTAACG---TC-TTTAAT-TT----GCCACAAA-AAGTA-TA----TACTTGTG--T-CTT-TTTATT-----TG--TAAATATAT-ATGCAAAT-T---CTA-A--AAAAACTAC-ATGTA-TATATGAACTTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGTTAGGCT---CTATCTACAATAAGACGTCCG--TGTTT-TG-CGCAATCATAGATCGTAG-GGT---AAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----TATA-GATAG-AGATATTTAA----TGGAAGATGCAGTTTG-AAGTTTATTAACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAAACTTCTTTGC-AC-ATGTAGGGGGAT--GGGGGGGGGGGGGGGGGGGTCAGT-CACCCCGTGG-TCCAC-T-AT------A---TA-AA-CACTATAAAACATTCGTTATAATTT-TTCTTAA--GTGC-CGATTTGTATCCTTT-CATGA-AA-TAAATGCATTAAAGTTACCAAAGATGC-GTTGACTGCGTGATATGACAACTGTT-TGTTTTGCTCGA-TCTTGGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATG-ATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGAC-TGAGGATA----AATCACA--CTG--CG-CCGGAATATTGGTAT----CGTTG--------AACGAAAACAAGCTTTT-GATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCTAAGCGA--TA-GT-C-GAGTGAAATTCAAG--ACGAT--AAC-CGA-AAAATGTATGA--------AAATCGAAA--CAT--TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAAT-AT--TTATTTCAA--AGAAGATG--CC-TA----TT-TATTT------G--TTTA----ACGTTAAT-ATAA--TGA-TA-TATTTTTCCTACCCCTTTTG--CT-GTT-TTTATAGA-T--T---TCAAGGGGA--ATAA----AGTAGT-------GTTTT--GTAA-TAGATT-------G-CA-CTAAGA--GTGA--ACAT---------CTCCAAAGTTTCATGAAATATA-----------TGT-C-CA---------TAT-TTTT--GA--AC-GAAGTGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTCCTTAAAC----ATTAT-TATA---ATGGCTTAGTTGT--CAAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGGTACTTAT-CAGAAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAGcagaa
gi|3 : CAAGGA--TTGAACT---CTTGAC----CT--C-TCTCAT-GCA-A-----GGCGAGGC-ACAACACCCCT--TGACTAT--C--CAAGAAT--------GTATT-A-AT-T--TTGACA-A-GATTTTAAC----TC-TTCAAT-TT----GC-ACAAA-AAGTAATAGATCTACTTGTG--T-CTT-TT-ATT-----TG--TAT-TATAT-ATGCAAAT-T---CTA-CT-AGAAACTAC-ATGTAATATATGAAACTACCCTCTTATGA-GA--TC-GTAT--------TTAGGTAC---TCAATTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TG-AATCATAGATCGTAG-G-T---AAC-T-AGA-TCATTGTAAGGA-TGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTG-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTC-TTGCCAC-ATGTA----------GGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCATTAATTTA---TA-ATACACTATAAAATATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCGTTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATACATGTAC-ATGTCTCTCTGACA--CTT-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------ATACTTGAGGATA----AATCACt
gi|4 : aCATTTTGCTGAAGC-AACA-TGAAGT-CCTTTAGTTAA-A--AAGCGCAGCAGAATCCATCCTT-CGCGAATTACAT-CAGAGTGAAAAT--AGCAAAGATAGAACATGATAAAACATACGATGTAGCGTAAATCGTAAGGCAATGTT---T-G--CCTGAGACACGGTTTTATAGAATTCTGTTATATT-----AACTTCTTTCTCAAAGAAAAAATCATTCTTGTATT-ATCAGAAGATG--CC-TAAGGGTA-TGTTTGAGTTTG--TTTAAGGGACGTTAGTAATAA-TTGT-CAGTATTTTTCGTGCCGCTATTG--CTGGTT-TTTTCAGA-TTCT---TCA--GGGG--ATAA----AAAGGTGAGGATGGTTTTAGGT-A-AAGATTATGCGGCA-CA-TGA--A--GAGATGATATTGCTTTATGCTCC-ATGTTTTTTCAATTATGACGATTTGGATTGT-C-CATAGGTTGTGTAT-CTTTGAGAGTACAGAAGTGAACT--AATTATGCAACTTTGAACATAAGC--T-T--G--ATGTTT--TTACAT----AATAC-TTTGAGCATGA--TAGATATTAGTAATAT-TGGGCATCA-------------TTTC-
gi|5 : GAACC---CTGGTCTGGTCT--CACTTCATAGCACATTTTTGGCG--GCGATAAAGCTATTATTGGCTATTGC--CAGGGGTTATCATAGATGTC-T-GT-C--T-GAGC-A-GATTTTAACCTCTTC-TTTTAC-TCTCTCGCCACAAACAAGTT-TA----T--TTGTAGATACTT-ATCATCACTAATGCATAT-AATCTGATGAAAGTAT---CTA-CT-AACATCTACCATGTAATATATGAAACT-CCCTCTTGTGACGAGTTCTGTATTTATTTTCTTAGGTACGGATCA-CACGGCC---TAATTAACATTCAGACG-TCAACTGTTTGTGTTGGAATCATAAGTCGTAACG-TGTGGACATAAGAGTCACTGTAAGG-ATGTCT
gi|6 : tataatacaataaattaaagaagcataaattaaatataaaaaaaacatccacatttcagggtttgtatgaagaactgtgTATCCTTT-ACTGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTGGCTTCA-TTCATCG---TTACCAAC-TGCTCCATTT--------------TCCGTCTATCATC--AGTGACGCCA-GATGCATGTAC-ATGTCTCTCTGACA--C-TCC-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTTGACA--------AAACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATATT-CTGC-GC--AC--TGGCGT-C------CTGAGA--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-T-GAGTGAAATTCAAG-AACGAT--AAC-CG--AAAATGTATGA--------AAATCGAAA--CA---TT---TAG--C--AA-----GGTTTT---AAA---TGTTATATTTTAAAAACTT-------AA--AAAAA
gi|7 : taTCCATTTGCCAGGTATATGT-TCCTCCTATCTTC--AGTGACGTCA-GATGCCAGT-CAATGTCTTCACGCCAAAC-T-CACCGAG-----GTTAGCTAGGGTCGTTGACTTTGGATATTTTGAAAAGCTTTGAAGGTATCTAGAGCACGTCCTCATCGATCGGAATAAT-GTCTTACACGGTGCCTCAAATATCA-AAACAAG-----GTATCCGC---------GC--C-AA---TAGCGTGC------TTGACA--A--CGCAGCG-------TCCCT-ATCGA--TC-AT-C-GAGTGAATTTCAAG-AA
gi|8 : ttCAAGGA--TCGAACC---CTGGTC----TT--C-TTTCTT-GTT-A-----GCAGTGGA-ACGAAACCCCT--TAGCCAT--C--CAAGTAT--------G-GAT-ATAT-TGTT-ATAA-G-GATTTTAAC----TC-CTAAAT-T-----GC-ACAAA-AAGTA--A----TATTTGTG--T-CTT-TT-ATT-----TG--TAT-TATAT-A--CAAAT-T---CCA-CT-AAAAACTAC-ATGTAATAtat
gi|9 : acagAAAATATTACCC---ACCCCAAGGT--TTGAACT---CCTGCC----CT--CAC-TCGT-GCA-A-----GGCGAGGC-ACAAAATCCCT--TGACTA-T-C--CAAGAAT--------GTGAT-A-ATCT--T-AAGA-A-GATTTTAAC----TC-TTTAAT-AT----G-CACAAA-AAGTA--A----TACTTGAG--T-C-T-TTTATT-----TG--TAT-TATAT-ATGCAAAT
Alignments
lowQualScore : 1111111111111111111111111111111 1111111111111111111111111111111111111111111111
lowQualScore : 1 111 111 1111 1 1 11111 111 22222222 111111 1111 1111 11 2222222 111 11111 22222 1111 1 11 2 33333333 222222222 111 2 11 1 3333333 111 11 11 2222222 111 2222 1111 1 11 11 1 1 0000000000000000000000000000000 1 1 1 6666666666666666 111 11 1 1 1 1 11 11 11 111 222222 1 11 11 111111 22222 22222222 1111 11 11 1 11 2222 33333333 1 222222 222222 2222222 2222222 11 11 1 11 33333333 11 55555555555555555555555 11 2222 2222 222222 11 44444444444 1 222 11 1 3333333 333333333 33333 11 22 1111 11 1 1 1 22222222 11 33333333333333333 11 22222 0000000000000000000000000000000000000000000000 5555555555555555555555555555 11 2222222222 1111 1 222222 111 11 3333333333333 111 1 1
lowQualScore : 0 777 0 99 000 1 1 2222 77 5 1 1 5 44444 0 1 5 3 77 999 77 0 00000000 0 666 666666 1 5 5 7777 5 2222 5 0 00 5 7777777 5 222 6 6 9 66666 99 6 3 6 55555 1111 88 0 3 0 33 0 66666666 888888888 777 2 0 3 33 55 0 8 1111111 111 33 33 6666666 55 111 1111 2 2222 3 0 33 2 66 2 6 3 5555555555555555555555555555555 0 2 0 0 2 2222222222222222 444 33 0 9 8 0 3 3 3 0 0 2 3 11 3 2 88 8 99 444 0 8 555555 5 0 11 8 3 11 444444 8 00000 8 0 5 99999999 0 0 7777 33 33 0 33 1111 66666666 0 0 99 2 1 8 8 111111 88 333333 0000000 6666666 3 8 11 8 999 0 22 88 33 0 33 55 66666666 33 99999999999999999999999 33 0000 0000 888888 33 00000000000 3 888 88 3 2222222 555555555 55555 1 44 00 3333 7 3 33 0 0 9 33333333 33 33 44444444444444444 33 11111 2222222222222222222222222222222222222222222222 1 9999999999999999999999999999 8 8 99 8 0 9999 9999999999 3 5 77 5 5555 1 11 111111 5 1 000 1 9999999 1 00 6666666666666 666 8 8 8 6 8 6 5 99 0
lowQualScore : . ... . .. ... . . .... .. . . . . ..... . . . . .. ... .. . ........ . ... ...... . . . .... . .... . . .. . ....... . ... . . . ..... .. . . . ..... .... .. . . . .. . ........ ......... ... . . . .. .. . . ....... ... .. .. ....... .. ... .... . .... . . .. . .. . . . ............................... . . . . . ................ ... .. . . . . . . . . . . . .. . . .. . .. ... . . ...... . . .. . . .. ...... . ..... . . . ........ . . .... .. .. . .. .... ........ . . .. . . . . ...... .. ...... ....... ....... . . .. . ... . .. .. .. . .. .. ........ .. ....................... .. .... .... ...... .. ........... . ... .. . ....... ......... ..... . .. .. .... . . .. . . . ........ .. .. ................. .. ..... .............................................. . ............................ . . .. . . .... .......... . . .. . .... . .. ...... . . ... . ....... . .. ............. ... . . . . . . . .. .
lowQualScore : 0 555 8 22 000 0 0 1111 99 0 1 4 7 33333 7 7 7 6 99 111 99 6 77777777 1 111 666666 0 7 7 9999 7 1111 7 1 99 7 3333333 2 777 7 7 8 77777 22 7 2 7 44444 8888 88 8 2 0 88 0 22222222 222222222 555 5 0 2 88 88 0 8 0000000 000 22 88 0000000 88 000 2222 5 0000 2 0 88 5 77 0 7 3 7777777777777777777777777777777 0 5 0 0 5 8888888888888888 888 22 0 2 0 0 2 2 2 0 0 5 2 88 2 5 55 0 00 000 8 0 888888 2 8 00 0 8 44 222222 0 00000 0 6 6 00000000 6 8 0000 88 88 0 22 2222 22222222 2 0 55 5 0 0 0 888888 88 000000 0000000 0000000 2 0 00 0 222 8 00 88 88 0 22 22 22222222 88 22222222222222222222222 22 8888 8888 222222 88 33333333333 3 000 33 3 3333333 000000000 77777 0 77 77 7777 3 7 88 0 0 0 22222222 55 88 22222222222222222 88 55555 5555555555555555555555555555555555555555555555 0 9999999999999999999999999999 0 0 00 0 7 8888 2222222222 9 7 99 7 0000 4 99 000000 7 4 000 7 7777777 0 55 7777777777777 777 0 0 0 0 0 7 5 22 8
consensus : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACTTCAT-GCA-A-----GGCGAGGC-ACAAAACCCCT--TGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAA----T-TTGCCACAAA-AAGTA-TA----TACTTGT--GT-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAATAT---CTA-CT-AAAAACTA-CATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATT-T---TATT-TC-AAGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGA--ATAA----AGTGGT-------GTTTT--GT-A-TAGATTA-----CG-CA-CTA--A--GTGA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTAT--GCAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
Reference ( family-4263 ) : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACCTCAT-GCA-A-----GGCGAGGC-ACAAAACCCCT--TGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAA----T-TTGCCACAAA-AAGTA-TA----TACTTGT--GT-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAATAT---CTA-CT-AAAAACTA-CATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATT-T---TATT-TC-AAGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGA--ATAA----AGTGGT-------GTTTT--GT-A-TAGATTA-----CG-CA-CTA--A--GTGA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTAT--GCAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
gi|1 : AAAAA-TCACCCCATTGTTTAATGAATTTGAACC----TAGGC----CTATCACTCAAT-GCA-A-----G-C-AGGC-ATAAA-CCTCT--TGGCT--T-CATCGCTTAT--------ACATTCA-GTAT--T-AACAGA-GATTT-AAC----TCGTTTAA----TCTTGCTACAAA-AAGTA--A----TA-TTG---GT-CTCATTTCCT-----TG--TAT-TAT-T-ATGCAAATATTCTCTAACTGAAAAACT--CATGTAATATATGAAACTACCCTCGTGTGA-GA--TCAGTAT--------TTAGGTAC------GC-AGGCCCCCTAATCTA-A-TAAGACGTTCA--TGTT-GTG-TGGTATACTAGATCGTAG---T---GAC-T-AG---CATGGTAAAGA-TGTCTGCTAATGCAT-TAT-ACAGGA-ATATTTAA----T--AAGATGCAGTTTTGA-GTT----AACATTATAAAC--ACAGAGGGCGTAA-TGCTGAGAGTATTAAA--TTCCTTGCCACCATGTA------TTTAAGGGG-------------T--GTTCACCTC-TGGATCCACATCAT------AGTATA-T--CACTACAAAACATTCGTTATAATTTGC-CTTAAATGTGCGCGATTT--ATCCTTTTCATGAGAAATAAATGCAT--AAGT-ACCAA-GATGCCGTTGA-TGCG--ATATGACA--TGTTAA---TTGCTCGAGTCCTAGCTTCCATTAATCAGAGTTACCAACCTGCTCCATTTT-C---CG-ATGC-TCCCTCTATCATCGAAGTGACGCCACGATGCATGTGCA-TGT---TCTGACA--T-C-C-CCGGGTCCTGGGTAA-TAG--TAGTT--CGTGAGACA--------AGCATTGAGGATA----AGTCACA--CTG--CG-CCGGAATAT--GTAT----CGTTA--------ACCG-AAACAAAGCTTTGGATCGTCCATTTT-CTGC-GCCAGCGGTGACG--C------TTGG-ACAA--CGCAGCG-------CCC-T-AGCGA--TA-ATGC-GAGTG----TCAAG-AACGAT--AAA-CGA-AAA-TGTCCGA--------AAAATGAAA--CA---ATATATAAGACA-GA-----GGTTTTA-AAA----TGTTATATT---AAAACGT-----TCAA--ATAAG--TATTGT---TATT-TC-A-GAAGATGTGCCATA----TTGTATTT--GTTCGGCTTTA-----CGTCATTA-TAACTTGAATA-TATT---CATACCCGCTTTGACTT-ATTATTTA-AGAGT--TAGATCAAGGGGA--ATAACGAAAGTG-T-------GTTTT--GT-A---GATTG-----CATCAGCTA-------GA--ACAT----------TCCAA-GTCTCATTGAATATA-----------TGT-CATAT--------TGTGCTTTG-GA--AC-GAAGTGAAACTAAAATA----------AAAAA-A-C--T-TAGG-CATAATTCCTAGGAA----GATATCTATG---AT-ACTTAAT-AT--AAACAATATGGGA-TCAATTTCAAATGCAGTTTCAGGTGACACATGG-ACTTGTATACGAAAGAGCGAGTTTATGCCTAGATTTTTTACGTCTGG-ACCGTA
gi|10 : tataataaaataattaaaaaaaaaaaaaaatTTTA--CT-GTT-TTTA-AGA-T--T---TGAAAGAGAACACAA----AGTAGA-------GTTTT--GT-ATTGGATTAAT---TG-CA-ATT--ATTATGA--AC-T---------C-----AGACTCAAAATATACA-----------TGTAC-TAT--------TTA-TTTTG-GAT-AC-GA--TGAA----AAATC----------AAACCCT-CTTT-T--G-TATATTTGATTAAACTGTTAATAC-TACA---GTGACTT
gi|11 : GT-T-CATGAA-----TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-TG-G-CATAATTGC-TAAAC-----ATAT-TATG---ATGACTTAG-TAT--GCAAAATATGGG-ATCA-------------TTTT--GTGA-ACATAG-ACTTAT-CACGATAATGCGATTTT-TGCCT-GA-TTTTTACG--TGG
gi|12 : tccaaAGCAAAAT--AAACA----------AAAATTA-C--TGT--GGCACATTTGCT-AAAC----A-TAT-TGCG---ATAACTTATTT-T--GCAAAATATGG-AATCA-------------TTTC-G-TGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGTCT-GA-TTTTTATG--TGGAACCCTACTTAA
gi|13 : TA-C--T-T--GGCATATTT-CCTAAAC----A-TAT-TATG---ATAACTTA-TTAT--GCAAAATATTGGA-CCA-------------TTTC-G-TGA-ACATGG-ACTGAT-CACGAAAATGCGA-TTT-TGCCT-GA-TTTTTACG--TGGAACCGTACTTAAG
gi|14 : -TCACCC---TCCGCCAGGA--TTGAACC---CTGGTC----CT--CAC-TCAC-GTA-A-----GGCGAGGC-ATCAAACCCCT--TGACTA-T-C--AAAGAAT--------GTATT-A-AT-A--A-AGGA-AGGATTTTAAC----TC-CTTAA----T-TTG-CACAAA-AAca
gi|15 : ATGTCTGCTA-----T-TATGACAG-A-ATATTTAATTAATGGAAGATGCAGTTTC-A-GTTTAT-AACATTATATAATTACATCAGGCGTAACTGCTGAGAGTATGAAA-
gi|16 : g-CACCCCGTGG-TCCAC-TCAT----------TATA--CACTATAGAACATTCGTTATAATTT-T-CTAAA-TGTGG-CGATTTTTATCTTTT-CA
gi|17 : GCTCGA-TCTTAGCTTC--TTCATCA---TT-----C-TGCTCCATTT--C---TGCATGCCTCCCTCTATCaa
gi|18 : taCCT-GATTTT-TACG--TGGAACCGTACTTAA
gi|2 : AAAAT-TTACCC---TCCTCAAAGA--TTGAACTTCTCTCGCC----CT--CACCTCATAGCA-A-----GGCGAGAC-ACAAACCCCCT--TGACTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AACA-A-GATTTTAACG---TC-TTTAA----T-TTGCCACAAA-AAGTA-TA----TACTTGT--GT-CTT-TTTATT-----TG--TAAATATAT-ATGCAAAT-T---CTA-A--AAAAACTA-CATGTA-TATATGAACTTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGTTAGGCT---CTATCTACAATAAGACGTCCG--TGTTT-TG-CGCAATCATAGATCGTAG-GGT---AAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----TATA-GATAG-AGATATTTAA----TGGAAGATGCAGTTTG-AAGTTTATTAACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAAACTTCTTTGC-AC-ATGTAGGGGGAT--GGGGGGGGGGGGGGGGGGGTCAGT-CACCCCGTGG-TCCAC-T-AT------A---TA-AA-CACTATAAAACATTCGTTATAATTT-TTCTTAA--GTGC-CGATTTGTATCCTTT-CATGA-AA-TAAATGCATTAAAGTTACCAAAGATGC-GTTGACTGCGTGATATGACAACTGTT-TGTTTTGCTCGA-TCTTGGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATG-ATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGAC-TGAGGATA----AATCACA--CTG--CG-CCGGAATATTGGTAT----CGTTG--------AACGAAAACAAGCTTTT-GATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCTAAGCGA--TA-GT-C-GAGTGAAATTCAAG--ACGAT--AAC-CGA-AAAATGTATGA--------AAATCGAAA--CAT--TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAAT-A-T-T---TATT-TCAAAGAAGATG--CC-TA----TT-TATTT------G--TTTA----ACGTTAAT-ATAA--TGA-TA-TATTTTTCCTACCCCTTTTG--CT-GTT-TTTATAGA-T--T---TCAAGGGGA--ATAA----AGTAGT-------GTTTT--GTAA-TAGATT-------G-CA-CTAAGA--GTGA--ACAT---------CTCCAAAGTTTCATGAAATATA-----------TGT-C-CA---------TAT-TTTT--GA--AC-GAAGTGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTCCTTAAAC----ATTAT-TATA---ATGGCTTAGTTGT--CAAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGGTACTTAT-CAGAAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAGcagaa
gi|3 : CAAGGA--TTGAACT---CTTGAC----CT--C-TCTCAT-GCA-A-----GGCGAGGC-ACAACACCCCT--TGACTAT--C--CAAGAAT--------GTATT-A-AT-T--TTGACA-A-GATTTTAAC----TC-TTCAA----T-TTGC-ACAAA-AAGTAATAGATCTACTTGT--GT-CTT-TT-ATT-----TG--TAT-TATAT-ATGCAAAT-T---CTA-CT-AGAAACTA-CATGTAATATATGAAACTACCCTCTTATGA-GA--TC-GTAT--------TTAGGTAC---TCAATTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TG-AATCATAGATCGTAG-G-T---AAC-T-AGA-TCATTGTAAGGA-TGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTG-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTC-TTGCCAC-ATGTA----------GGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCATTAATTTA---TA-ATACACTATAAAATATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCGTTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATACATGTAC-ATGTCTCTCTGACA--CTT-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------ATACTTGAGGATA----AATCACt
gi|4 : aCATTTTGCTGAAGC-AACA-TGAAGT-CCTTTAGTTAA-A--AAGCGCAGCAGAATCCATCCTT-CGCGAATTACAT-CAGAGTGAAAAT--AGCAAAGATAGAACATGATAAAACATACGATGTAGCGTAAATCGTAAGGCAATGTT---T-G--CCTGAGACACGGTTTTATAGAATTCTGTTATATT-----AACTTCTTTCTCAAAGAAAAAATCATT-CTTGTATTATC--AGAAGATG--CC-TAAGGGTA-TGTTTGAGTTTG--TTTAAGGGACGTTAGTAATAA-TTGT-CAGTATTTTTCGTGCCGCTATTG--CTGGTT-TTTTCAGA-TTCT---TCA--GGGG--ATAA----AAAGGTGAGGATGGTTTTAGGT-A-AAGATTATGCGGCA-CA-TGA--A--GAGATGATATTGCTTTATGCTCC-ATGTTTTTTCAATTATGACGATTTGGATTGT-C-CATAGGTTGTGTAT-CTTTGAGAGTACAGAAGTGAACT--AATTATGCAACTTTGAACATAAGC--T-T--G--ATGTTT--TTACAT----AATAC-TTTGAGCATGA--TAGATATTAGTAATAT-TGGGCATCA-------------TTTC-
gi|5 : GAACC---CTGGTCTGGTCT--CACTTCATAGCACATTTTTGGCG--GCGATAAAGCTATTATTGGCTATTGC--CAGGGGTTATCATAGATGTC-T-GT-C--T-GAGC-A-GATTTTAACCTCTTC-TTTTACTCTC-TCGCCACAAACAAGTT-TA----T--TTGTAGATACTT-ATCATCACTAATGCATAT-AATCTGATGAAAGTAT---CTA-CT-AACATCTACCATGTAATATATGAAACT-CCCTCTTGTGACGAGTTCTGTATTTATTTTCTTAGGTACGGATCA-CACGGCC---TAATTAACATTCAGACG-TCAACTGTTTGTGTTGGAATCATAAGTCGTAACG-TGTGGACATAAGAGTCACTGTAAGG-ATGTCT
gi|6 : tataatacaataaattaaagaagcataaattaaatataaaaaaaacatccacatttcagggtttgtatgaagaactgtgTATCCTTT-ACTGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTGGCTTCA-TTCATCG---TTACCAAC-TGCTCCATTT--------------TCCGTCTATCATC--AGTGACGCCA-GATGCATGTAC-ATGTCTCTCTGACA--C-TCC-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTTGACA--------AAACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATATT-CTGC-GC--AC--TGGCGT-C------CTGAGA--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-T-GAGTGAAATTCAAG-AACGAT--AAC-CG--AAAATGTATGA--------AAATCGAAA--CA---TT---TAG--C--AA-----GGTTTT---AAA---TGTTATATTTTAAAAACTT-------AA--AAAAA
gi|7 : taTCCATTTGCCAGGTATATGT-TCCTCCTATCTTC--AGTGACGTCA-GATGCCAGT-CAATGTCTTCACGCCAAAC-T-CACCGAG-----GTTAGCTAGGGTCGTTGACTTTGGATATTTTGAAAAGCTTTGAAGGTATCTAGAGCACGTCCTCATCGATCGGAATAAT-GTCTTACACGGTGCCTCAAATATCA-AAACAAG-----GTATCCGC---------GC--C-AA---TAGCGTGC------TTGACA--A--CGCAGCG-------TCCCT-ATCGA--TC-AT-C-GAGTGAATTTCAAG-AA
gi|8 : ttCAAGGA--TCGAACC---CTGGTC----TT--C-TTTCTT-GTT-A-----GCAGTGGA-ACGAAACCCCT--TAGCCAT--C--CAAGTAT--------G-GAT-ATAT-TGTT-ATAA-G-GATTTTAAC----TC-CTAAA----T-T-GC-ACAAA-AAGTA--A----TATTTGT--GT-CTT-TT-ATT-----TG--TAT-TATAT-A--CAAAT-T---CCA-CT-AAAAACTA-CATGTAATAtat
gi|9 : acagAAAATATTACCC---ACCCCAAGGT--TTGAACT---CCTGCC----CT--CAC-TCGT-GCA-A-----GGCGAGGC-ACAAAATCCCT--TGACTA-T-C--CAAGAAT--------GTGAT-A-ATCT--T-AAGA-A-GATTTTAAC----TC-TTTAA----T-ATG-CACAAA-AAGTA--A----TACTTGA--GT-C-T-TTTATT-----TG--TAT-TATAT-ATGCAAAT
Alignments
lowQualScore : 1111111111111111111111111111111 1111111111111111111111111111111111111111111111
lowQualScore : 1 111 111 1111 1 1 11111 111 22222222 111111 1111 1111 11 2222222 111 11111 22222 1111 1 11 2 33333333 222222222 111 2 11 1 3333333 111 11 11 2222222 111 2222 1111 1 11 11 1 1 0000000000000000000000000000000 1 1 1 6666666666666666 111 11 1 1 1 1 11 11 11 111 222222 1 11 11 111111 22222 22222222 1111 11 11 1 11 2222 33333333 1 222222 222222 2222222 2222222 11 11 1 11 33333333 11 55555555555555555555555 11 2222 2222 222222 11 44444444444 1 222 11 1 3333333 333333333 33333 11 22 1111 11 1 1 1 22222222 11 33333333333333333 11 22222 0000000000000000000000000000000000000000000000 5555555555555555555555555555 11 2222222222 1111 1 222222 111 11 3333333333333 111 1 1
lowQualScore : 0 777 0 99 000 1 1 2222 77 1 4 1 5 44444 0 4 5 3 77 999 77 0 00000000 0 666 666666 1 5 5 7777 5 2222 5 0 00 5 7777777 5 222 6 6 9 66666 99 6 3 6 55555 1111 88 0 3 0 33 0 66666666 888888888 777 2 0 3 33 55 0 8 1111111 111 33 33 6666666 55 111 1111 2 2222 3 0 33 2 66 2 6 3 5555555555555555555555555555555 0 2 0 0 2 2222222222222222 444 33 0 9 8 0 3 3 3 0 0 2 3 11 3 2 88 8 99 444 0 8 555555 5 0 11 8 3 11 444444 8 00000 8 0 5 99999999 0 0 7777 33 33 0 33 1111 66666666 0 0 99 2 1 8 8 111111 88 333333 0000000 6666666 3 8 11 8 999 0 22 88 33 0 33 55 66666666 33 99999999999999999999999 33 0000 0000 888888 33 00000000000 3 888 88 3 2222222 555555555 55555 1 44 00 3333 7 3 33 0 0 9 33333333 33 33 44444444444444444 33 11111 2222222222222222222222222222222222222222222222 1 9999999999999999999999999999 8 8 99 8 0 9999 9999999999 3 5 77 5 5555 1 11 111111 5 1 000 1 9999999 1 00 6666666666666 666 8 8 8 6 8 6 5 99 0
lowQualScore : . ... . .. ... . . .... .. . . . . ..... . . . . .. ... .. . ........ . ... ...... . . . .... . .... . . .. . ....... . ... . . . ..... .. . . . ..... .... .. . . . .. . ........ ......... ... . . . .. .. . . ....... ... .. .. ....... .. ... .... . .... . . .. . .. . . . ............................... . . . . . ................ ... .. . . . . . . . . . . . .. . . .. . .. ... . . ...... . . .. . . .. ...... . ..... . . . ........ . . .... .. .. . .. .... ........ . . .. . . . . ...... .. ...... ....... ....... . . .. . ... . .. .. .. . .. .. ........ .. ....................... .. .... .... ...... .. ........... . ... .. . ....... ......... ..... . .. .. .... . . .. . . . ........ .. .. ................. .. ..... .............................................. . ............................ . . .. . . .... .......... . . .. . .... . .. ...... . . ... . ....... . .. ............. ... . . . . . . . .. .
lowQualScore : 0 555 8 22 000 0 0 1111 99 7 1 4 7 33333 7 3 7 6 99 111 99 6 77777777 1 111 666666 0 7 7 9999 7 1111 7 1 99 7 3333333 2 777 7 7 8 77777 22 7 2 7 44444 8888 88 8 2 0 88 0 22222222 222222222 555 5 0 2 88 88 0 8 0000000 000 22 88 0000000 88 000 2222 5 0000 2 0 88 5 77 0 7 3 7777777777777777777777777777777 0 5 0 0 5 8888888888888888 888 22 0 2 0 0 2 2 2 0 0 5 2 88 2 5 55 0 00 000 8 0 888888 2 8 00 0 8 44 222222 0 00000 0 6 6 00000000 6 8 0000 88 88 0 22 2222 22222222 2 0 55 5 0 0 0 888888 88 000000 0000000 0000000 2 0 00 0 222 8 00 88 88 0 22 22 22222222 88 22222222222222222222222 22 8888 8888 222222 88 33333333333 3 000 33 3 3333333 000000000 77777 0 77 77 7777 3 7 88 0 0 0 22222222 55 88 22222222222222222 88 55555 5555555555555555555555555555555555555555555555 0 9999999999999999999999999999 0 0 00 0 7 8888 2222222222 9 7 99 7 0000 4 99 000000 7 4 000 7 7777777 0 55 7777777777777 777 0 0 0 0 0 7 5 22 8
consensus : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACTTCAT-GCA-A-----GGCGAGGC-ACAAAAC--CCCTTGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAA----T-TTGCCACAAA-AAGTA-TA----TACTTGT--GT-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAATAT---CTA-CT-AAAAACTA-CATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATT-T---TATT-TC-AAGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGA--ATAA----AGTGGT-------GTTTT--GT-A-TAGATTA-----CG-CA-CTA--A--GTGA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTAT--GCAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
Reference ( family-4263 ) : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACTTCAT-GCA-A-----GGCGAGGC-ACAAAAC--CCCTTGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAA----T-TTGCCACAAA-AAGTA-TA----TACTTGT--GT-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAATAT---CTA-CT-AAAAACTA-CATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATT-T---TATT-TC-AAGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGA--ATAA----AGTGGT-------GTTTT--GT-A-TAGATTA-----CG-CA-CTA--A--GTGA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTAT--GCAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
gi|1 : AAAAA-TCACCCCATTGTTTAATGAATTTGAACC----TAGGC----CTATCACTCAAT-GCA-A-----G-C-AGGC-ATAAA-C--CTCTTGGCT--T-CATCGCTTAT--------ACATTCA-GTAT--T-AACAGA-GATTT-AAC----TCGTTTAA----TCTTGCTACAAA-AAGTA--A----TA-TTG---GT-CTCATTTCCT-----TG--TAT-TAT-T-ATGCAAATATTCTCTAACTGAAAAACT--CATGTAATATATGAAACTACCCTCGTGTGA-GA--TCAGTAT--------TTAGGTAC------GC-AGGCCCCCTAATCTA-A-TAAGACGTTCA--TGTT-GTG-TGGTATACTAGATCGTAG---T---GAC-T-AG---CATGGTAAAGA-TGTCTGCTAATGCAT-TAT-ACAGGA-ATATTTAA----T--AAGATGCAGTTTTGA-GTT----AACATTATAAAC--ACAGAGGGCGTAA-TGCTGAGAGTATTAAA--TTCCTTGCCACCATGTA------TTTAAGGGG-------------T--GTTCACCTC-TGGATCCACATCAT------AGTATA-T--CACTACAAAACATTCGTTATAATTTGC-CTTAAATGTGCGCGATTT--ATCCTTTTCATGAGAAATAAATGCAT--AAGT-ACCAA-GATGCCGTTGA-TGCG--ATATGACA--TGTTAA---TTGCTCGAGTCCTAGCTTCCATTAATCAGAGTTACCAACCTGCTCCATTTT-C---CG-ATGC-TCCCTCTATCATCGAAGTGACGCCACGATGCATGTGCA-TGT---TCTGACA--T-C-C-CCGGGTCCTGGGTAA-TAG--TAGTT--CGTGAGACA--------AGCATTGAGGATA----AGTCACA--CTG--CG-CCGGAATAT--GTAT----CGTTA--------ACCG-AAACAAAGCTTTGGATCGTCCATTTT-CTGC-GCCAGCGGTGACG--C------TTGG-ACAA--CGCAGCG-------CCC-T-AGCGA--TA-ATGC-GAGTG----TCAAG-AACGAT--AAA-CGA-AAA-TGTCCGA--------AAAATGAAA--CA---ATATATAAGACA-GA-----GGTTTTA-AAA----TGTTATATT---AAAACGT-----TCAA--ATAAG--TATTGT---TATT-TC-A-GAAGATGTGCCATA----TTGTATTT--GTTCGGCTTTA-----CGTCATTA-TAACTTGAATA-TATT---CATACCCGCTTTGACTT-ATTATTTA-AGAGT--TAGATCAAGGGGA--ATAACGAAAGTG-T-------GTTTT--GT-A---GATTG-----CATCAGCTA-------GA--ACAT----------TCCAA-GTCTCATTGAATATA-----------TGT-CATAT--------TGTGCTTTG-GA--AC-GAAGTGAAACTAAAATA----------AAAAA-A-C--T-TAGG-CATAATTCCTAGGAA----GATATCTATG---AT-ACTTAAT-AT--AAACAATATGGGA-TCAATTTCAAATGCAGTTTCAGGTGACACATGG-ACTTGTATACGAAAGAGCGAGTTTATGCCTAGATTTTTTACGTCTGG-ACCGTA
gi|10 : tataataaaataattaaaaaaaaaaaaaaatTTTA--CT-GTT-TTTA-AGA-T--T---TGAAAGAGAACACAA----AGTAGA-------GTTTT--GT-ATTGGATTAAT---TG-CA-ATT--ATTATGA--AC-T---------C-----AGACTCAAAATATACA-----------TGTAC-TAT--------TTA-TTTTG-GAT-AC-GA--TGAA----AAATC----------AAACCCT-CTTT-T--G-TATATTTGATTAAACTGTTAATAC-TACA---GTGACTT
gi|11 : GT-T-CATGAA-----TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-TG-G-CATAATTGC-TAAAC-----ATAT-TATG---ATGACTTAG-TAT--GCAAAATATGGG-ATCA-------------TTTT--GTGA-ACATAG-ACTTAT-CACGATAATGCGATTTT-TGCCT-GA-TTTTTACG--TGG
gi|12 : tccaaAGCAAAAT--AAACA----------AAAATTA-C--TGT--GGCACATTTGCT-AAAC----A-TAT-TGCG---ATAACTTATTT-T--GCAAAATATGG-AATCA-------------TTTC-G-TGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGTCT-GA-TTTTTATG--TGGAACCCTACTTAA
gi|13 : TA-C--T-T--GGCATATTT-CCTAAAC----A-TAT-TATG---ATAACTTA-TTAT--GCAAAATATTGGA-CCA-------------TTTC-G-TGA-ACATGG-ACTGAT-CACGAAAATGCGA-TTT-TGCCT-GA-TTTTTACG--TGGAACCGTACTTAAG
gi|14 : -TCACCC---TCCGCCAGGA--TTGAACC---CTGGTC----CT--CACT-CAC-GTA-A-----GGCGAGGC-ATCAAAC--CCCTTGACTA-T-C--AAAGAAT--------GTATT-A-AT-A--A-AGGA-AGGATTTTAAC----TC-CTTAA----T-TTG-CACAAA-AAca
gi|15 : ATGTCTGCTA-----T-TATGACAG-A-ATATTTAATTAATGGAAGATGCAGTTTC-A-GTTTAT-AACATTATATAATTACATCAGGCGTAACTGCTGAGAGTATGAAA-
gi|16 : g-CACCCCGTGG-TCCAC-TCAT----------TATA--CACTATAGAACATTCGTTATAATTT-T-CTAAA-TGTGG-CGATTTTTATCTTTT-CA
gi|17 : GCTCGA-TCTTAGCTTC--TTCATCA---TT-----C-TGCTCCATTT--C---TGCATGCCTCCCTCTATCaa
gi|18 : taCCT-GATTTT-TACG--TGGAACCGTACTTAA
gi|2 : AAAAT-TTACCC---TCCTCAAAGA--TTGAACTTCTCTCGCC----CT--CACCTCATAGCA-A-----GGCGAGAC-ACAAACC--CCCTTGACTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AACA-A-GATTTTAACG---TC-TTTAA----T-TTGCCACAAA-AAGTA-TA----TACTTGT--GT-CTT-TTTATT-----TG--TAAATATAT-ATGCAAAT-T---CTA-A--AAAAACTA-CATGTA-TATATGAACTTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGTTAGGCT---CTATCTACAATAAGACGTCCG--TGTTT-TG-CGCAATCATAGATCGTAG-GGT---AAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----TATA-GATAG-AGATATTTAA----TGGAAGATGCAGTTTG-AAGTTTATTAACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAAACTTCTTTGC-AC-ATGTAGGGGGAT--GGGGGGGGGGGGGGGGGGGTCAGT-CACCCCGTGG-TCCAC-T-AT------A---TA-AA-CACTATAAAACATTCGTTATAATTT-TTCTTAA--GTGC-CGATTTGTATCCTTT-CATGA-AA-TAAATGCATTAAAGTTACCAAAGATGC-GTTGACTGCGTGATATGACAACTGTT-TGTTTTGCTCGA-TCTTGGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATG-ATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGAC-TGAGGATA----AATCACA--CTG--CG-CCGGAATATTGGTAT----CGTTG--------AACGAAAACAAGCTTTT-GATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCTAAGCGA--TA-GT-C-GAGTGAAATTCAAG--ACGAT--AAC-CGA-AAAATGTATGA--------AAATCGAAA--CAT--TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAAT-A-T-T---TATT-TCAAAGAAGATG--CC-TA----TT-TATTT------G--TTTA----ACGTTAAT-ATAA--TGA-TA-TATTTTTCCTACCCCTTTTG--CT-GTT-TTTATAGA-T--T---TCAAGGGGA--ATAA----AGTAGT-------GTTTT--GTAA-TAGATT-------G-CA-CTAAGA--GTGA--ACAT---------CTCCAAAGTTTCATGAAATATA-----------TGT-C-CA---------TAT-TTTT--GA--AC-GAAGTGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTCCTTAAAC----ATTAT-TATA---ATGGCTTAGTTGT--CAAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGGTACTTAT-CAGAAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAGcagaa
gi|3 : CAAGGA--TTGAACT---CTTGAC----CT--CTCT-CAT-GCA-A-----GGCGAGGC-ACAACAC--CCCTTGACTAT--C--CAAGAAT--------GTATT-A-AT-T--TTGACA-A-GATTTTAAC----TC-TTCAA----T-TTGC-ACAAA-AAGTAATAGATCTACTTGT--GT-CTT-TT-ATT-----TG--TAT-TATAT-ATGCAAAT-T---CTA-CT-AGAAACTA-CATGTAATATATGAAACTACCCTCTTATGA-GA--TC-GTAT--------TTAGGTAC---TCAATTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TG-AATCATAGATCGTAG-G-T---AAC-T-AGA-TCATTGTAAGGA-TGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTG-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTC-TTGCCAC-ATGTA----------GGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCATTAATTTA---TA-ATACACTATAAAATATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCGTTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATACATGTAC-ATGTCTCTCTGACA--CTT-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------ATACTTGAGGATA----AATCACt
gi|4 : aCATTTTGCTGAAGC-AACA-TGAAGT-CCTTTAGTTAA-A--AAGCGCAGCAGAATCCATCCTT-CGCGAATTACAT-CAGAGTGAAAAT--AGCAAAGATAGAACATGATAAAACATACGATGTAGCGTAAATCGTAAGGCAATGTT---T-G--CCTGAGACACGGTTTTATAGAATTCTGTTATATT-----AACTTCTTTCTCAAAGAAAAAATCATT-CTTGTATTATC--AGAAGATG--CC-TAAGGGTA-TGTTTGAGTTTG--TTTAAGGGACGTTAGTAATAA-TTGT-CAGTATTTTTCGTGCCGCTATTG--CTGGTT-TTTTCAGA-TTCT---TCA--GGGG--ATAA----AAAGGTGAGGATGGTTTTAGGT-A-AAGATTATGCGGCA-CA-TGA--A--GAGATGATATTGCTTTATGCTCC-ATGTTTTTTCAATTATGACGATTTGGATTGT-C-CATAGGTTGTGTAT-CTTTGAGAGTACAGAAGTGAACT--AATTATGCAACTTTGAACATAAGC--T-T--G--ATGTTT--TTACAT----AATAC-TTTGAGCATGA--TAGATATTAGTAATAT-TGGGCATCA-------------TTTC-
gi|5 : GAACC---CTGGTCTGGTCT--CACTTCATAGCACATTTTTGGC--GGCGATAAAGCTATTATTGGCTATTGC--CAGGGGTTATCATAGATGTC-T-GT-C--T-GAGC-A-GATTTTAACCTCTTC-TTTTACTCTC-TCGCCACAAACAAGTT-TA----T--TTGTAGATACTT-ATCATCACTAATGCATAT-AATCTGATGAAAGTAT---CTA-CT-AACATCTACCATGTAATATATGAAACT-CCCTCTTGTGACGAGTTCTGTATTTATTTTCTTAGGTACGGATCA-CACGGCC---TAATTAACATTCAGACG-TCAACTGTTTGTGTTGGAATCATAAGTCGTAACG-TGTGGACATAAGAGTCACTGTAAGG-ATGTCT
gi|6 : tataatacaataaattaaagaagcataaattaaatataaaaaaaacatccacatttcagggtttgtatgaagaactgtgTATCCTTT-ACTGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTGGCTTCA-TTCATCG---TTACCAAC-TGCTCCATTT--------------TCCGTCTATCATC--AGTGACGCCA-GATGCATGTAC-ATGTCTCTCTGACA--C-TCC-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTTGACA--------AAACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATATT-CTGC-GC--AC--TGGCGT-C------CTGAGA--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-T-GAGTGAAATTCAAG-AACGAT--AAC-CG--AAAATGTATGA--------AAATCGAAA--CA---TT---TAG--C--AA-----GGTTTT---AAA---TGTTATATTTTAAAAACTT-------AA--AAAAA
gi|7 : taTCCATTTGCCAGGTATATGT-TCCTCCTATCTTC--AGTGACGTCA-GATGCCAGT-CAATGTCTTCACGCCAAAC-T-CACCGAG-----GTTAGCTAGGGTCGTTGACTTTGGATATTTTGAAAAGCTTTGAAGGTATCTAGAGCACGTCCTCATCGATCGGAATAAT-GTCTTACACGGTGCCTCAAATATCA-AAACAAG-----GTATCCGC---------GC--C-AA---TAGCGTGC------TTGACA--A--CGCAGCG-------TCCCT-ATCGA--TC-AT-C-GAGTGAATTTCAAG-AA
gi|8 : ttCAAGGA--TCGAACC---CTGGTC----TT--C-TTTCTT-GTT-A-----GCAGTGGA-ACGAAAC--CCCTTAGCCAT--C--CAAGTAT--------G-GAT-ATAT-TGTT-ATAA-G-GATTTTAAC----TC-CTAAA----T-T-GC-ACAAA-AAGTA--A----TATTTGT--GT-CTT-TT-ATT-----TG--TAT-TATAT-A--CAAAT-T---CCA-CT-AAAAACTA-CATGTAATAtat
gi|9 : acagAAAATATTACCC---ACCCCAAGGT--TTGAACT---CCTGCC----CT--CACT-CGT-GCA-A-----GGCGAGGC-ACAAAAT--CCCTTGACTA-T-C--CAAGAAT--------GTGAT-A-ATCT--T-AAGA-A-GATTTTAAC----TC-TTTAA----T-ATG-CACAAA-AAGTA--A----TACTTGA--GT-C-T-TTTATT-----TG--TAT-TATAT-ATGCAAAT
Alignments
lowQualScore : 1111111111111111111111111111111 1111111111111111111111111111111111111111111111
lowQualScore : 1 111 111 1111 1 1 11111 111 22222222 111111 1111 1111 11 2222222 111 11111 22222 1111 1 11 2 33333333 222222222 111 2 11 1 3333333 111 11 11 2222222 111 2222 1111 1 11 11 1 1 0000000000000000000000000000000 1 1 1 6666666666666666 111 11 1 1 1 1 11 11 11 111 222222 1 11 11 111111 22222 22222222 1111 11 11 1 11 2222 33333333 1 222222 222222 2222222 2222222 11 11 1 11 33333333 11 55555555555555555555555 11 2222 2222 222222 11 44444444444 1 222 11 1 3333333 333333333 33333 11 22 1111 11 1 1 1 22222222 11 33333333333333333 11 22222 0000000000000000000000000000000000000000000000 5555555555555555555555555555 11 2222222222 1111 1 222222 111 11 3333333333333 111 1 1
lowQualScore : 0 777 0 99 000 1 1 2222 77 1 4 1 5 44444 0 4 5 3 77 999 77 0 00000000 0 666 666666 1 5 5 7777 5 2222 5 0 00 5 7777777 5 222 6 6 9 66666 99 6 3 6 55555 1111 88 0 3 0 33 0 66666666 888888888 777 2 0 3 33 55 0 8 1111111 111 33 33 6666666 55 111 1111 2 2222 3 0 33 2 66 2 6 3 5555555555555555555555555555555 0 2 0 0 2 2222222222222222 444 33 0 9 8 0 3 3 3 0 0 2 3 11 3 2 88 8 99 444 0 8 555555 5 0 11 8 3 11 444444 8 00000 8 0 5 99999999 0 0 7777 33 33 0 33 1111 66666666 0 0 99 2 1 8 8 111111 88 333333 0000000 6666666 3 8 11 8 999 0 22 88 33 0 33 55 66666666 33 99999999999999999999999 33 0000 0000 888888 33 00000000000 3 888 88 3 2222222 555555555 55555 1 44 00 3333 7 3 33 0 0 9 33333333 33 33 44444444444444444 33 11111 2222222222222222222222222222222222222222222222 1 9999999999999999999999999999 8 8 99 8 0 9999 9999999999 3 5 77 5 5555 1 11 111111 5 1 000 1 9999999 1 00 6666666666666 666 8 8 8 6 8 6 5 99 0
lowQualScore : . ... . .. ... . . .... .. . . . . ..... . . . . .. ... .. . ........ . ... ...... . . . .... . .... . . .. . ....... . ... . . . ..... .. . . . ..... .... .. . . . .. . ........ ......... ... . . . .. .. . . ....... ... .. .. ....... .. ... .... . .... . . .. . .. . . . ............................... . . . . . ................ ... .. . . . . . . . . . . . .. . . .. . .. ... . . ...... . . .. . . .. ...... . ..... . . . ........ . . .... .. .. . .. .... ........ . . .. . . . . ...... .. ...... ....... ....... . . .. . ... . .. .. .. . .. .. ........ .. ....................... .. .... .... ...... .. ........... . ... .. . ....... ......... ..... . .. .. .... . . .. . . . ........ .. .. ................. .. ..... .............................................. . ............................ . . .. . . .... .......... . . .. . .... . .. ...... . . ... . ....... . .. ............. ... . . . . . . . .. .
lowQualScore : 0 555 8 22 000 0 0 1111 99 7 1 4 7 33333 7 3 7 6 99 111 99 6 77777777 1 111 666666 0 7 7 9999 7 1111 7 1 99 7 3333333 2 777 7 7 8 77777 22 7 2 7 44444 8888 88 8 2 0 88 0 22222222 222222222 555 5 0 2 88 88 0 8 0000000 000 22 88 0000000 88 000 2222 5 0000 2 0 88 5 77 0 7 3 7777777777777777777777777777777 0 5 0 0 5 8888888888888888 888 22 0 2 0 0 2 2 2 0 0 5 2 88 2 5 55 0 00 000 8 0 888888 2 8 00 0 8 44 222222 0 00000 0 6 6 00000000 6 8 0000 88 88 0 22 2222 22222222 2 0 55 5 0 0 0 888888 88 000000 0000000 0000000 2 0 00 0 222 8 00 88 88 0 22 22 22222222 88 22222222222222222222222 22 8888 8888 222222 88 33333333333 3 000 33 3 3333333 000000000 77777 0 77 77 7777 3 7 88 0 0 0 22222222 55 88 22222222222222222 88 55555 5555555555555555555555555555555555555555555555 0 9999999999999999999999999999 0 0 00 0 7 8888 2222222222 9 7 99 7 0000 4 99 000000 7 4 000 7 7777777 0 55 7777777777777 777 0 0 0 0 0 7 5 22 8
consensus : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACTTCAT-GCA-A-----GGCGAGGC-ACAAAAC--CCCTTGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAA----T-TTGCCACAAA-AAGTA-TA----TACTTGT--GT-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAATAT---CTA-CT-AAAAACTA-CATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATT-T---TATT-TC-AAGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGA--ATAA----AGTGGT-------GTTTT--GT-A-TAGATTA-----CG-CA-CTA--A--GTGA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTAT--GCAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
Reference ( family-4263 ) : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACTTCAT-GCA-A-----GGCGAGGC-ACAAAAC--CCCTTGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAA----T-TTGCCACAAA-AAGTA-TA----TACTTGT--GT-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAATAT---CTA-CT-AAAAACTA-CATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATT-T---TATT-TC-AAGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGA--ATAA----AGTGGT-------GTTTT--GT-A-TAGATTA-----CG-CA-CTA--A--GTGA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTAT--GCAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
gi|1 : AAAAA-TCACCCCATTGTTTAATGAATTTGAACC----TAGGC----CTATCACTCAAT-GCA-A-----G-C-AGGC-ATAAA-C--CTCTTGGCT--T-CATCGCTTAT--------ACATTCA-GTAT--T-AACAGA-GATTT-AAC----TCGTTTAA----TCTTGCTACAAA-AAGTA--A----TA-TTG---GT-CTCATTTCCT-----TG--TAT-TAT-T-ATGCAAATATTCTCTAACTGAAAAACT--CATGTAATATATGAAACTACCCTCGTGTGA-GA--TCAGTAT--------TTAGGTAC------GC-AGGCCCCCTAATCTA-A-TAAGACGTTCA--TGTT-GTG-TGGTATACTAGATCGTAG---T---GAC-T-AG---CATGGTAAAGA-TGTCTGCTAATGCAT-TAT-ACAGGA-ATATTTAA----T--AAGATGCAGTTTTGA-GTT----AACATTATAAAC--ACAGAGGGCGTAA-TGCTGAGAGTATTAAA--TTCCTTGCCACCATGTA------TTTAAGGGG-------------T--GTTCACCTC-TGGATCCACATCAT------AGTATA-T--CACTACAAAACATTCGTTATAATTTGC-CTTAAATGTGCGCGATTT--ATCCTTTTCATGAGAAATAAATGCAT--AAGT-ACCAA-GATGCCGTTGA-TGCG--ATATGACA--TGTTAA---TTGCTCGAGTCCTAGCTTCCATTAATCAGAGTTACCAACCTGCTCCATTTT-C---CG-ATGC-TCCCTCTATCATCGAAGTGACGCCACGATGCATGTGCA-TGT---TCTGACA--T-C-C-CCGGGTCCTGGGTAA-TAG--TAGTT--CGTGAGACA--------AGCATTGAGGATA----AGTCACA--CTG--CG-CCGGAATAT--GTAT----CGTTA--------ACCG-AAACAAAGCTTTGGATCGTCCATTTT-CTGC-GCCAGCGGTGACG--C------TTGG-ACAA--CGCAGCG-------CCC-T-AGCGA--TA-ATGC-GAGTG----TCAAG-AACGAT--AAA-CGA-AAA-TGTCCGA--------AAAATGAAA--CA---ATATATAAGACA-GA-----GGTTTTA-AAA----TGTTATATT---AAAACGT-----TCAA--ATAAG--TATTGT---TATT-TC-A-GAAGATGTGCCATA----TTGTATTT--GTTCGGCTTTA-----CGTCATTA-TAACTTGAATA-TATT---CATACCCGCTTTGACTT-ATTATTTA-AGAGT--TAGATCAAGGGGA--ATAACGAAAGTG-T-------GTTTT--GT-A---GATTG-----CATCAGCTA-------GA--ACAT----------TCCAA-GTCTCATTGAATATA-----------TGT-CATAT--------TGTGCTTTG-GA--AC-GAAGTGAAACTAAAATA----------AAAAA-A-C--T-TAGG-CATAATTCCTAGGAA----GATATCTATG---AT-ACTTAAT-AT--AAACAATATGGGA-TCAATTTCAAATGCAGTTTCAGGTGACACATGG-ACTTGTATACGAAAGAGCGAGTTTATGCCTAGATTTTTTACGTCTGG-ACCGTA
gi|10 : tataataaaataattaaaaaaaaaaaaaaatTTTA--CT-GTT-TTTA-AGA-T--T---TGAAAGAGAACACAA----AGTAGA-------GTTTT--GT-ATTGGATTAAT---TG-CA-ATT--ATTATGA--AC-T---------C-----AGACTCAAAATATACA-----------TGTAC-TAT--------TTA-TTTTG-GAT-AC-GA--TGAA----AAATC----------AAACCCT-CTTT-T--G-TATATTTGATTAAACTGTTAATAC-TACA---GTGACTT
gi|11 : GT-T-CATGAA-----TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-TG-G-CATAATTGC-TAAAC-----ATAT-TATG---ATGACTTAG-TAT--GCAAAATATGGG-ATCA-------------TTTT--GTGA-ACATAG-ACTTAT-CACGATAATGCGATTTT-TGCCT-GA-TTTTTACG--TGG
gi|12 : tccaaAGCAAAAT--AAACA----------AAAATTA-C--TGT--GGCACATTTGCT-AAAC----A-TAT-TGCG---ATAACTTATTT-T--GCAAAATATGG-AATCA-------------TTTC-G-TGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGTCT-GA-TTTTTATG--TGGAACCCTACTTAA
gi|13 : TA-C--T-T--GGCATATTT-CCTAAAC----A-TAT-TATG---ATAACTTA-TTAT--GCAAAATATTGGA-CCA-------------TTTC-G-TGA-ACATGG-ACTGAT-CACGAAAATGCGA-TTT-TGCCT-GA-TTTTTACG--TGGAACCGTACTTAAG
gi|14 : -TCACCC---TCCGCCAGGA--TTGAACC---CTGGTC----CT--CACT-CAC-GTA-A-----GGCGAGGC-ATCAAAC--CCCTTGACTA-T-C--AAAGAAT--------GTATT-A-AT-A--A-AGGA-AGGATTTTAAC----TC-CTTAA----T-TTG-CACAAA-AAca
gi|15 : ATGTCTGCTA-----T-TATGACAG-A-ATATTTAATTAATGGAAGATGCAGTTTC-A-GTTTAT-AACATTATATAATTACATCAGGCGTAACTGCTGAGAGTATGAAA-
gi|16 : g-CACCCCGTGG-TCCAC-TCAT----------TATA--CACTATAGAACATTCGTTATAATTT-T-CTAAA-TGTGG-CGATTTTTATCTTTT-CA
gi|17 : GCTCGA-TCTTAGCTTC--TTCATCA---TT-----C-TGCTCCATTT--C---TGCATGCCTCCCTCTATCaa
gi|18 : taCCT-GATTTT-TACG--TGGAACCGTACTTAA
gi|2 : AAAAT-TTACCC---TCCTCAAAGA--TTGAACTTCTCTCGCC----CT--CACCTCATAGCA-A-----GGCGAGAC-ACAAACC--CCCTTGACTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AACA-A-GATTTTAACG---TC-TTTAA----T-TTGCCACAAA-AAGTA-TA----TACTTGT--GT-CTT-TTTATT-----TG--TAAATATAT-ATGCAAAT-T---CTA-A--AAAAACTA-CATGTA-TATATGAACTTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGTTAGGCT---CTATCTACAATAAGACGTCCG--TGTTT-TG-CGCAATCATAGATCGTAG-GGT---AAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----TATA-GATAG-AGATATTTAA----TGGAAGATGCAGTTTG-AAGTTTATTAACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAAACTTCTTTGC-AC-ATGTAGGGGGAT--GGGGGGGGGGGGGGGGGGGTCAGT-CACCCCGTGG-TCCAC-T-AT------A---TA-AA-CACTATAAAACATTCGTTATAATTT-TTCTTAA--GTGC-CGATTTGTATCCTTT-CATGA-AA-TAAATGCATTAAAGTTACCAAAGATGC-GTTGACTGCGTGATATGACAACTGTT-TGTTTTGCTCGA-TCTTGGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATG-ATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGAC-TGAGGATA----AATCACA--CTG--CG-CCGGAATATTGGTAT----CGTTG--------AACGAAAACAAGCTTTT-GATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCTAAGCGA--TA-GT-C-GAGTGAAATTCAAG--ACGAT--AAC-CGA-AAAATGTATGA--------AAATCGAAA--CAT--TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAAT-A-T-T---TATT-TCAAAGAAGATG--CC-TA----TT-TATTT------G--TTTA----ACGTTAAT-ATAA--TGA-TA-TATTTTTCCTACCCCTTTTG--CT-GTT-TTTATAGA-T--T---TCAAGGGGA--ATAA----AGTAGT-------GTTTT--GTAA-TAGATT-------G-CA-CTAAGA--GTGA--ACAT---------CTCCAAAGTTTCATGAAATATA-----------TGT-C-CA---------TAT-TTTT--GA--AC-GAAGTGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTCCTTAAAC----ATTAT-TATA---ATGGCTTAGTTGT--CAAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGGTACTTAT-CAGAAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAGcagaa
gi|3 : CAAGGA--TTGAACT---CTTGAC----CT--CTCT-CAT-GCA-A-----GGCGAGGC-ACAACAC--CCCTTGACTAT--C--CAAGAAT--------GTATT-A-AT-T--TTGACA-A-GATTTTAAC----TC-TTCAA----T-TTGC-ACAAA-AAGTAATAGATCTACTTGT--GT-CTT-TT-ATT-----TG--TAT-TATAT-ATGCAAAT-T---CTA-CT-AGAAACTA-CATGTAATATATGAAACTACCCTCTTATGA-GA--TC-GTAT--------TTAGGTAC---TCAATTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TG-AATCATAGATCGTAG-G-T---AAC-T-AGA-TCATTGTAAGGA-TGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTG-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTC-TTGCCAC-ATGTA----------GGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCATTAATTTA---TA-ATACACTATAAAATATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCGTTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATACATGTAC-ATGTCTCTCTGACA--CTT-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------ATACTTGAGGATA----AATCACt
gi|4 : aCATTTTGCTGAAGC-AACA-TGAAGT-CCTTTAGTTAA-A--AAGCGCAGCAGAATCCATCCTT-CGCGAATTACAT-CAGAGTGAAAAT--AGCAAAGATAGAACATGATAAAACATACGATGTAGCGTAAATCGTAAGGCAATGTT---T-G--CCTGAGACACGGTTTTATAGAATTCTGTTATATT-----AACTTCTTTCTCAAAGAAAAAATCATT-CTTGTATTATC--AGAAGATG--CC-TAAGGGTA-TGTTTGAGTTTG--TTTAAGGGACGTTAGTAATAA-TTGT-CAGTATTTTTCGTGCCGCTATTG--CTGGTT-TTTTCAGA-TTCT---TCA--GGGG--ATAA----AAAGGTGAGGATGGTTTTAGGT-A-AAGATTATGCGGCA-CA-TGA--A--GAGATGATATTGCTTTATGCTCC-ATGTTTTTTCAATTATGACGATTTGGATTGT-C-CATAGGTTGTGTAT-CTTTGAGAGTACAGAAGTGAACT--AATTATGCAACTTTGAACATAAGC--T-T--G--ATGTTT--TTACAT----AATAC-TTTGAGCATGA--TAGATATTAGTAATAT-TGGGCATCA-------------TTTC-
gi|5 : GAACC---CTGGTCTGGTCT--CACTTCATAGCACATTTTTGGC--GGCGATAAAGCTATTATTGGCTATTGC--CAGGGGTTATCATAGATGTC-T-GT-C--T-GAGC-A-GATTTTAACCTCTTC-TTTTACTCTC-TCGCCACAAACAAGTT-TA----T--TTGTAGATACTT-ATCATCACTAATGCATAT-AATCTGATGAAAGTAT---CTA-CT-AACATCTACCATGTAATATATGAAACT-CCCTCTTGTGACGAGTTCTGTATTTATTTTCTTAGGTACGGATCA-CACGGCC---TAATTAACATTCAGACG-TCAACTGTTTGTGTTGGAATCATAAGTCGTAACG-TGTGGACATAAGAGTCACTGTAAGG-ATGTCT
gi|6 : tataatacaataaattaaagaagcataaattaaatataaaaaaaacatccacatttcagggtttgtatgaagaactgtgTATCCTTT-ACTGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTGGCTTCA-TTCATCG---TTACCAAC-TGCTCCATTT--------------TCCGTCTATCATC--AGTGACGCCA-GATGCATGTAC-ATGTCTCTCTGACA--C-TCC-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTTGACA--------AAACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATATT-CTGC-GC--AC--TGGCGT-C------CTGAGA--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-T-GAGTGAAATTCAAG-AACGAT--AAC-CG--AAAATGTATGA--------AAATCGAAA--CA---TT---TAG--C--AA-----GGTTTT---AAA---TGTTATATTTTAAAAACTT-------AA--AAAAA
gi|7 : taTCCATTTGCCAGGTATATGT-TCCTCCTATCTTC--AGTGACGTCA-GATGCCAGT-CAATGTCTTCACGCCAAAC-T-CACCGAG-----GTTAGCTAGGGTCGTTGACTTTGGATATTTTGAAAAGCTTTGAAGGTATCTAGAGCACGTCCTCATCGATCGGAATAAT-GTCTTACACGGTGCCTCAAATATCA-AAACAAG-----GTATCCGC---------GC--C-AA---TAGCGTGC------TTGACA--A--CGCAGCG-------TCCCT-ATCGA--TC-AT-C-GAGTGAATTTCAAG-AA
gi|8 : ttCAAGGA--TCGAACC---CTGGTC----TT--C-TTTCTT-GTT-A-----GCAGTGGA-ACGAAAC--CCCTTAGCCAT--C--CAAGTAT--------G-GAT-ATAT-TGTT-ATAA-G-GATTTTAAC----TC-CTAAA----T-T-GC-ACAAA-AAGTA--A----TATTTGT--GT-CTT-TT-ATT-----TG--TAT-TATAT-A--CAAAT-T---CCA-CT-AAAAACTA-CATGTAATAtat
gi|9 : acagAAAATATTACCC---ACCCCAAGGT--TTGAACT---CCTGCC----CT--CACT-CGT-GCA-A-----GGCGAGGC-ACAAAAT--CCCTTGACTA-T-C--CAAGAAT--------GTGAT-A-ATCT--T-AAGA-A-GATTTTAAC----TC-TTTAA----T-ATG-CACAAA-AAGTA--A----TACTTGA--GT-C-T-TTTATT-----TG--TAT-TATAT-ATGCAAAT
blockSeqs : A . . TCT G T TGGT . A T A C TTTTT G G A TA TTG . TATCATAG AT TGTT G . G CTCT . CTCT . CC C ATAGATC C TAG A . T ACTAA CA A A G AT CT AC A C GT T TTATTTTC GGATCACA . C A T AC TG T C CGTGTG ATA AG AA TA TG AG TTAA G GAA T T TT C AC T C . GGGGGATGGGGGGGGGGGGGGGGGGGTCA . G . . C TAATTTATAATA TT T . T . . A T T A . C T AC A G TT . A . . GCCAGG C C . . A AA AACT A . C T TTTTGAAA TCTA TC AT A TG TACA CCTCAAAT A CT G T G A AACA TG CTTTAG AAAG GAATCCA C A AT C CA AT CA AG A AT AT TGTAGCGT GG ATGTTTGCCTGAGACAC AT ATTC TTAA CTTTCT AG ATCATTCTTG A AAA . . AGGGTA GAGTTTG AGGGA A AA T CAG T C . G . T TTCT AA AC AAAGGTGAGGATG AG ATTG ATGCGGCACATGAAGAGATGATATTGCTTTATGCTCCAT A ACGATTTGGATTGTCCATAGGTTGTG . A GT A AT TGCAACTTTG C G TT G GG G TT TGTTAA . C AGC G GATATTA C AA . GG . T . T . . T .
blockSeqs : . . . . C C . . A T A . . G . C . TT . . A TTT C . . G . . . CC . TA C T . . C . . . A . T CT A A . . . . TCAGTT . C T T . TG . G GGT T A A T TG A . G CA T . . C C . . . GGGGGT . G . . C ATAAA T T . G . . A T T . . C T CA A G . . . . . C C C . . A AA CTT . . . T . . . . . T . . . CT G T . . AAC T . GAA . T . . . C AA A . . A AC . . TTTTAGCGA A A A T . ATATT . A . . TT G A G A . TA T G . . . C TT AG . AGTAGA . AATA GCACTAAGAGTGAACATCTCCAAA G TGTACTAT . . T . AT . T . . . GG G CT AT . T . G GTTGT C AA . G . . . . . . T .
blockSeqs : . . . . T A . . T T . . . G . A . T . . A CTT C . . . . . . C . TA T T . . T . . . C . T CT A . . . . . TCAATT . C . . . T . . GT T A A T G A . G GA T . . C . G . . . TATA T . . T . . . T T . . C T CA . G . . . . . C C C . . A A CTC . . . T . . . . . T . . . . . A . . AC T . CAA . C . . . T AT A . . . AT . . TTTAGCAA . A . . . . . . . TT . . AGTAGT . AAA AATTGCAATTATTATGAACTCA C TGTCCA . . . . AT . T . . . GG G TT AA . C . A GTAT C CA . G . . . . . . . .
blockSeqs : . . G T . . A . . . . G . G . T . . A AA G . . . . . . C . A C T . . . . . . A . T A A . . . . . C T . . . . A CT . . . G . . . . . AA T . AA . C . . . C TT . . . . . CT . T . . . G C TT A . T . A TTTT A A . G . . . . . . . .
blockSeqs : . . G T . . A . . . . G . A . T . . T TT A . . . . . . C . A . A . . . . . . A . . . . . . T . . . G . T A . T . G TTAT T A . . . .
blockSeqs : . T C . . . . . . . . . A . T . . A CT G . . . . . . C . A . . . G . T A . T . G
blockSeqCons : ** ** ** A** TT**** C* TA***** T** T**** CT** A* ** *** C***** ** CT**** ***** AAC*** T* AA***** C** AT AT** GG** A***** AA ************* G** **
originalCons : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACTTCAT-GCA-A-----GGCGAGGC-ACAAAAC--CCCTTGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAA----T-TTGCCACAAA-AAGTA-TA----TACTTGT--GT-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAATAT---CTA-CT-AAAAACTA-CATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATT-T---TATT-TC-AAGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGA--ATAA----AGTGGT-------GTTTT--GT-A-TAGATTA-----CG-CA-CTA--A--GTGA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-T--G-CATATTTGCTTAAAC----AATAT-TACG---ATGACTTAGTTAT--GCAAAATATGGGAATCA-------------TTTC-GGTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
finalCons : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACTTCAT-GCA-A-----GGCGAGGC-ACAAAAC--CCCTTGGCTATT-C--CAAGAAT--------GTGTTA--ATTT----AANA-A-GATTTTAAC----TC-TTTAA----T-TTGC-ACAAA-AAGTATA-----TACTTGT--GT-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAATT----CTACT--AAAAACTA-CATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTTC-----TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACACT----C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GCAAC---TGACGT-C------TTGAAA-----CGCAGCG-------CCCCT-AGCGA--TA-ATC--GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATT-T---TATT-TC-AAGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGA--ATAA----AGTGGT-------GTTTT--GT-A-TAGATTA-----CG-CA-CTA--A--GTGA--ACAT---------CTCCAAAGTCTCATNAAATATA-----------TGT-C-CAT--------TAT-TTTTG-GA--AC-GAAGCGAAAT--AAATA----------AAAATTA-C--T-TGG--CATATTTGCTTAAACA-----TAT-TACG---ATGACTTAGTTAT--GCAAAATATGGGAATCA-------------TTTCG--TGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
Alignments
lowQualScore : 1111111111111111111111111111111
lowQualScore : 1 111 111 1111 1 1 11111 111 22222222 111111 1111 1111111 1 2222222 11111 2222 1111 1 11 2 33333333 222222222 111 2 11 1 3333333 111 11 11 2222222 111 2222 1111 1 11 11 1 1 0000000000000000000000000000000 1 1 1 6666666666666666 111 11 1 1 1 1 11 11 11 111 222222 1 11 11 111111 22222 22222222 1111 11 11 1 11 2222 33333333 1 222222 222222 2222222 2222222 11 11 1 11 33333333 11 55555555555555555555555 11 2222 2222 222222 11 44444444444 1 222 11 1 3333333 333333333 33333 11 22 1111 11 1 1 1 22222222 33333333333333333333 11 22222 666666666666666666 1111111 222222222 1 1 11 1 11111 1111 11 4444444444444 11 1 1
lowQualScore : 0 777 0 99 000 1 1 2222 77 1 4 1 5 44444 0 1 5 3 77 999 77 0 00000000 0 666 666666 1 5 5 7777 5 2222222 7 5 7777777 5 3 99 6 6 9 66666 99 6 3 6 0000 1111 0 8 0 3 0 33 0 66666666 888888888 777 2 0 3 33 55 0 8 1111111 111 33 33 6666666 55 111 1111 2 2222 3 0 33 2 66 2 6 3 5555555555555555555555555555555 0 2 0 0 2 2222222222222222 444 33 0 9 8 0 3 3 3 0 0 2 3 11 3 2 88 8 99 444 0 8 555555 5 0 11 8 3 11 444444 8 00000 8 0 5 99999999 0 0 7777 33 33 0 33 1111 66666666 0 0 99 2 1 8 8 111111 88 333333 0000000 6666666 3 8 11 8 999 0 22 88 33 0 33 55 66666666 33 99999999999999999999999 33 0000 0000 888888 33 00000000000 3 888 88 3 2222222 555555555 55555 1 44 00 3333 7 3 33 0 0 9 33333333 33 99999999999999999999 33 11111 000000000000000000 7 6666666 1 333333333 1 0 2 0 0 0 11 8 6 99 0 4 99 66666 6 6 0 3 3333 11 4444444444444 99 8 8 8 6 8 6 5 99 0
lowQualScore : . ... . .. ... . . .... .. . . . . ..... . . . . .. ... .. . ........ . ... ...... . . . .... . ....... . . ....... . . .. . . . ..... .. . . . .... .... . . . . . .. . ........ ......... ... . . . .. .. . . ....... ... .. .. ....... .. ... .... . .... . . .. . .. . . . ............................... . . . . . ................ ... .. . . . . . . . . . . . .. . . .. . .. ... . . ...... . . .. . . .. ...... . ..... . . . ........ . . .... .. .. . .. .... ........ . . .. . . . . ...... .. ...... ....... ....... . . .. . ... . .. .. .. . .. .. ........ .. ....................... .. .... .... ...... .. ........... . ... .. . ....... ......... ..... . .. .. .... . . .. . . . ........ .. .................... .. ..... .................. . ....... . ......... . . . . . . .. . . .. . . .. ..... . . . . .... .. ............. .. . . . . . . . .. .
lowQualScore : 0 555 8 22 000 0 0 1111 99 7 1 4 7 33333 7 7 7 6 99 111 99 6 77777777 1 111 666666 0 7 7 9999 7 7777777 1 7 3333333 2 5 22 7 7 8 77777 22 7 2 7 8888 8888 8 0 8 2 0 88 0 22222222 222222222 555 5 0 2 88 88 0 8 0000000 000 22 88 0000000 88 000 2222 5 0000 2 0 88 5 77 0 7 3 7777777777777777777777777777777 0 5 0 0 5 8888888888888888 888 22 0 2 0 0 2 2 2 0 0 5 2 88 2 5 55 0 00 000 8 0 888888 2 8 00 0 8 44 222222 0 00000 0 6 6 00000000 6 8 0000 88 88 0 22 2222 22222222 2 0 55 5 0 0 0 888888 88 000000 0000000 0000000 2 0 00 0 222 8 00 88 88 0 22 22 22222222 88 22222222222222222222222 22 8888 8888 222222 88 33333333333 3 000 33 3 3333333 000000000 77777 0 77 77 7777 3 7 88 0 0 0 22222222 55 00000000000000000000 88 55555 000000000000000000 3 0000000 0 888888888 2 0 5 0 8 8 00 0 7 22 8 2 22 77777 7 7 7 7 6666 44 0000000000000 00 0 0 0 0 0 7 5 22 8
consensus : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACTTCAT-GCA-A-----GGCGAGGC-ACAAAACCCCT--TGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAAT-TT----GC-ACAAA-AAGTA-TA----TACTTGTG--T-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAAT----TCTA-CT-AAAAACTAC-ATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATT-T---TATT-TC-AAGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGAATA--A----AGTGGT-------GTTTT--GT-A-TAGATTA--CG-CA-CTA--A--GTGAACATCTCCAAAGTCTCATNAAATATATGT-C-CAT---TAT-TTTTGGA-ACGAAGCGAAAT--AAAT-AAAAATTACT-T-GGCATATTTGCTTA--AAC-----A-TAT-TACGATGACTTAGTTATGCAAAATATGGGAATCA-------------TTTC--GTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
Reference ( family-4263 ) : AAAAT-TCACCC---TCCTCAAGGA--TTGAACC---CTNGNC----CT--CACTTCAT-GCA-A-----GGCGAGGC-ACAAAACCCCT--TGGCTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AANA-A-GATTTTAAC----TC-TTTAAT-TT----GC-ACAAA-AAGTA-TA----TACTTGTG--T-CTT-TTTATT-----TG--TAT-TATAT-ATGCAAAT----TCTA-CT-AAAAACTAC-ATGTAATATATGAAACTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGCTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TGGAATCATAGATCGTAG-G-T---GAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTN-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTCCTTGCCAC-ATGTA------T--GGGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCAT------A---TA-A--CACTATAAAACATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTTTTGCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATGCATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-C-GAGTGAAATTCAAG-AACGAT--AAC-CGA-AAAACGTACGA--------AAATCGAAA--CA---TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAATCATT-T---TATT-TC-AAGAAGATG--CC-TA----TT-TATTT--GTTCG--TTTA----ACGTTANTAATAA-TTGA-TA-TATTTTTCGTACCCCTTTTG--CT-GTT-TTTACAGA-T--T---TCAAGGGGAATA--A----AGTGGT-------GTTTT--GT-A-TAGATTA--CG-CA-CTA--A--GTGAACATCTCCAAAGTCTCATNAAATATATGT-C-CAT---TAT-TTTTGGA-ACGAAGCGAAAT--AAAT-AAAAATTACT-T-GGCATATTTGCTTA--AAC-----A-TAT-TACGATGACTTAGTTATGCAAAATATGGGAATCA-------------TTTC--GTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAG
gi|1 : AAAAA-TCACCCCATTGTTTAATGAATTTGAACC----TAGGC----CTATCACTCAAT-GCA-A-----G-C-AGGC-ATAAA-CCTCT--TGGCT--T-CATCGCTTAT--------ACATTCA-GTAT--T-AACAGA-GATTT-AAC----TCGTTTAATCTT----GCTACAAA-AAGTA--A----TA-TTG-G--T-CTCATTTCCT-----TG--TAT-TAT-T-ATGCAAATATTCTCTAACTGAAAAACT-C-ATGTAATATATGAAACTACCCTCGTGTGA-GA--TCAGTAT--------TTAGGTAC------GC-AGGCCCCCTAATCTA-A-TAAGACGTTCA--TGTT-GTG-TGGTATACTAGATCGTAG---T---GAC-T-AG---CATGGTAAAGA-TGTCTGCTAATGCAT-TAT-ACAGGA-ATATTTAA----T--AAGATGCAGTTTTGA-GTT----AACATTATAAAC--ACAGAGGGCGTAA-TGCTGAGAGTATTAAA--TTCCTTGCCACCATGTA------TTTAAGGGG-------------T--GTTCACCTC-TGGATCCACATCAT------AGTATA-T--CACTACAAAACATTCGTTATAATTTGC-CTTAAATGTGCGCGATTT--ATCCTTTTCATGAGAAATAAATGCAT--AAGT-ACCAA-GATGCCGTTGA-TGCG--ATATGACA--TGTTAA---TTGCTCGAGTCCTAGCTTCCATTAATCAGAGTTACCAACCTGCTCCATTTT-C---CG-ATGC-TCCCTCTATCATCGAAGTGACGCCACGATGCATGTGCA-TGT---TCTGACA--T-C-C-CCGGGTCCTGGGTAA-TAG--TAGTT--CGTGAGACA--------AGCATTGAGGATA----AGTCACA--CTG--CG-CCGGAATAT--GTAT----CGTTA--------ACCG-AAACAAAGCTTTGGATCGTCCATTTT-CTGC-GCCAGCGGTGACG--C------TTGG-ACAA--CGCAGCG-------CCC-T-AGCGA--TA-ATGC-GAGTG----TCAAG-AACGAT--AAA-CGA-AAA-TGTCCGA--------AAAATGAAA--CA---ATATATAAGACA-GA-----GGTTTTA-AAA----TGTTATATT---AAAACGT-----TCAA--ATAAG--TATTGT---TATT-TC-A-GAAGATGTGCCATA----TTGTATTT--GTTCGGCTTTA-----CGTCATTA-TAACTTGAATA-TATT---CATACCCGCTTTGACTT-ATTATTTA-AGAGT--TAGATCAAGGGGAATA--ACGAAAGTG-T-------GTTTT--GT-A---GATTG--CATCAGCTA-------GAACAT-TCCAA-GTCTCATTGAATATATGT-CATAT---TGTGCTTTGGA-ACGAAGTGAAACTAAAAT-AAAAAA-ACT-TAGGCATAATT-CCTAGGAAG-----A-TATCTATGAT-ACTTAAT-ATAAACAATATGGGA-TCAATTTCAAATGCAGTTTCAGGTGACACATGG-ACTTGTATACGAAAGAGCGAGTTTATGCCTAGATTTTTTACGTCTGG-ACCGTA
gi|10 : tataataaaataattaaaaaaaaaaaaaaatTTTA--CT-GTT-TTTA-AGA-T--T---TGAAAGAGAACACAA----AGTAGA-------GTTTT--GT-ATTGGATTAATTG-CA-ATT--ATTATGAAC-TC-----AGACTCAAAATATACATGTAC-TAT---TTA-TTTTGGATACGA--TGAA----AAATCAAACCCTCTT-T-TGTATATTTGATTA--AACTGTTAA-TAC-TACAGTGACTT
gi|11 : GT-T-CATGAATAT-TTTTGGA-ACGAAGCGAAAT--AAAT-AAAAATTACT-T-GGCATAATTGC-TA--AAC-----A-TAT-TATGATGACTTAG-TATGCAAAATATGGG-ATCA-------------TTTT--GTGA-ACATAG-ACTTAT-CACGATAATGCGATTTT-TGCCT-GA-TTTTTACG--TGG
gi|12 : tccaaAGCAAAAT--AAAC-AAAAATTACTGT-GGCACATTTGCT-A--AAC-----A-TAT-TGCGATAACTTATTT-TGCAAAATATGG-AATCA-------------TTTC--GTGA-ACATGG-ACTTAT-CACGAAAATGCGA-TTT-TGTCT-GA-TTTTTATG--TGGAACCCTACTTAA
gi|13 : TACT-T-GGCATATTT-CCTA--AAC-----A-TAT-TATGATAACTTA-TTATGCAAAATATTGGA-CCA-------------TTTC--GTGA-ACATGG-ACTGAT-CACGAAAATGCGA-TTT-TGCCT-GA-TTTTTACG--TGGAACCGTACTTAAG
gi|14 : -TCACCC---TCCGCCAGGA--TTGAACC---CTGGTC----CT--CACT-CAC-GTA-A-----GGCGAGGC-ATCAAACCCCT--TGACTA-T-C--AAAGAAT--------GTATT-A-AT-A--A-AGGA-AGGATTTTAAC----TC-CTTAAT-TT----GC-ACAAA-AAca
gi|15 : ATGTCTGCTA-----T-TATGACAG-A-ATATTTAATTAATGGAAGATGCAGTTTC-A-GTTTAT-AACATTATATAATTACATCAGGCGTAACTGCTGAGAGTATGAAA-
gi|16 : g-CACCCCGTGG-TCCAC-TCAT----------TATA--CACTATAGAACATTCGTTATAATTT-T-CTAAA-TGTGG-CGATTTTTATCTTTT-CA
gi|17 : GCTCGA-TCTTAGCTTC--TTCATCA---TT-----C-TGCTCCATTT--C---TGCATGCCTCCCTCTATCaa
gi|18 : taCCT-GATTTT-TACG--TGGAACCGTACTTAA
gi|2 : AAAAT-TTACCC---TCCTCAAAGA--TTGAACTTCTCTCGCC----CT--CACCTCATAGCA-A-----GGCGAGAC-ACAAACCCCCT--TGACTATT-C--CAAGAAT--------GTGTT-A-AT-T--T-AACA-A-GATTTTAACG---TC-TTTAAT-TT----GCCACAAA-AAGTA-TA----TACTTGTG--T-CTT-TTTATT-----TG--TAAATATAT-ATGCAAAT----TCTA-A--AAAAACTAC-ATGTA-TATATGAACTTACCCTCTTGTGA-GA--TC-GTAT--------TTAGGTAC---TCAGTTAGGCT---CTATCTACAATAAGACGTCCG--TGTTT-TG-CGCAATCATAGATCGTAG-GGT---AAC-T-AGA-TCATTGTAAGGAATGTCTGCTA-----TATA-GATAG-AGATATTTAA----TGGAAGATGCAGTTTG-AAGTTTATTAACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAAACTTCTTTGC-AC-ATGTAGGGGGAT--GGGGGGGGGGGGGGGGGGGTCAGT-CACCCCGTGG-TCCAC-T-AT------A---TA-AA-CACTATAAAACATTCGTTATAATTT-TTCTTAA--GTGC-CGATTTGTATCCTTT-CATGA-AA-TAAATGCATTAAAGTTACCAAAGATGC-GTTGACTGCGTGATATGACAACTGTT-TGTTTTGCTCGA-TCTTGGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATG-ATGTACAATGTCTCTCTGACA--C-T-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------AGAC-TGAGGATA----AATCACA--CTG--CG-CCGGAATATTGGTAT----CGTTG--------AACGAAAACAAGCTTTT-GATCCGCCATTTT-CTGC-GC-AAC--TGACGT-C------TTGA-A--A--CGCAGCG-------CCCCTAAGCGA--TA-GT-C-GAGTGAAATTCAAG--ACGAT--AAC-CGA-AAAATGTATGA--------AAATCGAAA--CAT--TT---TAG--C--GA-----GGTTTTA-AAAA---TGTTATATT---AAAACTT-----TCAA--AAAAAAT-A-T-T---TATT-TCAAAGAAGATG--CC-TA----TT-TATTT------G--TTTA----ACGTTAAT-ATAA--TGA-TA-TATTTTTCCTACCCCTTTTG--CT-GTT-TTTATAGA-T--T---TCAAGGGGAATA--A----AGTAGT-------GTTTT--GTAA-TAGATT----G-CA-CTAAGA--GTGAACATCTCCAAAGTTTCATGAAATATATGT-C-CA----TAT-TTTT-GA-ACGAAGTGAAAT--AAAT-AAAAATTACT-T--GCATATTTCCTTA--AAC-----ATTAT-TATAATGGCTTAGTTGTCAAAAATATGGGAATCA-------------TTTCG-GTGA-ACATGGTACTTAT-CAGAAAAATGCGA-TTT-TGCCT-GATTTTTTACG--TGGAACCGTACTTAAGcagaa
gi|3 : CAAGGA--TTGAACT---CTTGAC----CT--CTCT-CAT-GCA-A-----GGCGAGGC-ACAACACCCCT--TGACTAT--C--CAAGAAT--------GTATT-A-AT-T--TTGACA-A-GATTTTAAC----TC-TTCAAT-TT----GC-ACAAA-AAGTAATAGATCTACTTGTG--T-CTT-TT-ATT-----TG--TAT-TATAT-ATGCAAAT----TCTA-CT-AGAAACTAC-ATGTAATATATGAAACTACCCTCTTATGA-GA--TC-GTAT--------TTAGGTAC---TCAATTAGGCC---TAATCTACA-TAAGACGTTCG--TGTTTGTG-TG-AATCATAGATCGTAG-G-T---AAC-T-AGA-TCATTGTAAGGA-TGTCTGCTA-----T-TATGACAG-A-ATATTTAA----TGGAAGATGCAGTTTG-A-GTTTAT-AACATTATAAAA--ACATCAGGCGTAACTGCTGAGAGTATGAAA-CTTC-TTGCCAC-ATGTA----------GGGGG-------------T--GT-CACCCCGTGG-TCCAC-TCATTAATTTA---TA-ATACACTATAAAATATTCGTTATAATTT-T-CTTAA-TGTGC-CGATTTTTATCCTTT-CATGA-AAATAAATGCGTTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTAGCTTC--TTCATCA---TTACCAAC-TGCTCCATTT--C---TGCATGCCTCCCTCTATCATC--AGTGACGCCA-GATACATGTAC-ATGTCTCTCTGACA--CTT-C-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTAGACA--------ATACTTGAGGATA----AATCACt
gi|4 : aCATTTTGCTGAAGC-AACA-TGAAGT-CCTTTAGTTAA-A--AAGCGCAGCAGAATCCATCCTT-CGCGAATTACAT-CAGAGTGAAAAT--AGCAAAGATAGAACATGATAAAACATACGATGTAGCGTAAATCGTAAGGCAATGTT---T-G--CCTGAGACACGGTTTTATAGAATTCTGTTATATT-----AACTTCTTTCTCAAAGAAAAAATCATT-CTTGTATTATC--AGAAGATG--CC-TAAGGGTA-TGTTTGAGTTTG--TTTAAGGGACGTTAGTAATAA-TTGT-CAGTATTTTTCGTGCCGCTATTG--CTGGTT-TTTTCAGA-TTCT---TCA--GGGGATA--A----AAAGGTGAGGATGGTTTTAGGT-A-AAGATTA--TG-C
gi|5 : GAACC---CTGGTCTGGTCT--CACTTCATAGCACATTTTTGGCG--GCGATAAAGCTATTATTGGCTATTGC--CAGGGGTTATCATAGATGTC-T-GT-C--T-GAGC-A-GATTTTAACCTCTTC-TTTTAC-TCTCTCGCCACAAACAAGTT-TA----T--TTGTAGATACTT-ATCATCACTAATGCATAT-AATCTGATGAAAGTA---TCTA-CT-AACATCTACCATGTAATATATGAAACT-CCCTCTTGTGACGAGTTCTGTATTTATTTTCTTAGGTACGGATCA-CACGGCC---TAATTAACATTCAGACG-TCAACTGTTTGTGTTGGAATCATAAGTCGTAACG-TGTGGACATAAGAGTCACTGTAAGG-ATGTCTggcacatgaagagatgatattgctttatgctccatgttttttcaattatgacgatttggattgtccataggttgtgtatctttgagagtacagaagtgaactaattatgcaactttgaacataagcttgatgtttttacataatactttgagcatgatagatattagtaatattgggcatcatttc
gi|6 : tataatacaataaattaaagaagcataaattaaatataaaaaaaacatccacatttcagggtttgtatgaagaactgtgTATCCTTT-ACTGA-AAATAAATGCATTAAAGTTACCAA-GATGC-GTTGACTGCGTGATATGACACATGTTATGTT--GCTCGA-TCTTGGCTTCA-TTCATCG---TTACCAAC-TGCTCCATTT--------------TCCGTCTATCATC--AGTGACGCCA-GATGCATGTAC-ATGTCTCTCTGACA--C-TCC-CCGAG-----GGTAA-TAAGTTAGTTTCCTTTTGACA--------AAACTTGAGGATA----AATCACA--CTG--CG-CCGGAATATT-GTAT----CGTTG--------ACCG-AAACAAGCTTTTGGATCCGCCATATT-CTGC-GC--AC--TGGCGT-C------CTGAGA--A--CGCAGCG-------CCCCT-AGCGA--TA-AT-T-GAGTGAAATTCAAG-AACGAT--AAC-CG--AAAATGTATGA--------AAATCGAAA--CA---TT---TAG--C--AA-----GGTTTT---AAA---TGTTATATTTTAAAAACTT-------AA--AAAAA
gi|7 : taTCCATTTGCCAGGTATATGT-TCCTCCTATCTTC--AGTGACGTCA-GATGCCAGT-CAATGTCTTCACGCCAAAC-T-CACCGAG-----GTTAGCTAGGGTCGTTGACTTTGGATATTTTGAAAAGCTTTGAAGGTATCTAGAGCACGTCCTCATCGATCGGAATAAT-GTCTTACACGGTGCCTCAAATATCA-AAACAAG-----GTATCCGC---------GC--C-AA---TAGCGTGC------TTGACA--A--CGCAGCG-------TCCCT-ATCGA--TC-AT-C-GAGTGAATTTCAAG-AA
gi|8 : ttCAAGGA--TCGAACC---CTGGTC----TT--C-TTTCTT-GTT-A-----GCAGTGGA-ACGAAACCCCT--TAGCCAT--C--CAAGTAT--------G-GAT-ATAT-TGTT-ATAA-G-GATTTTAAC----TC-CTAAAT-T-----GC-ACAAA-AAGTA--A----TATTTGTG--T-CTT-TT-ATT-----TG--TAT-TATAT-A--CAAAT----TCCA-CT-AAAAACTAC-ATGTAATAtat
gi|9 : acagAAAATATTACCC---ACCCCAAGGT--TTGAACT---CCTGCC----CT--CACT-CGT-GCA-A-----GGCGAGGC-ACAAAATCCCT--TGACTA-T-C--CAAGAAT--------GTGAT-A-ATCT--T-AAGA-A-GATTTTAAC----TC-TTTAAT-AT----GC-ACAAA-AAGTA--A----TACTTGAG--T-C-T-TTTATT-----TG--TAT-TATAT-ATGCAAAT----TC