lowQualScore : 444444444 1 11 22222 1111 11111111 7777777777777777777777777777777777777777777777777777777777777777777 11 3333333333 11 222 1 2222 222 4444444 11 2 2222 2 1 1111 11 777 222 222222
lowQualScore : 4 4 4 66 55 4 4 4 4 444444444 55 0 22 4 4 1 44444 8 0 44 3 4 4 5555 88888888 66 99 5 3333333333333333333333333333333333333333333333333333333333333333333 33 3 8 2 5555555555 3 6 99 222 3 8888 333 7 7777777 11 0 4444 0 6 6 0 8888 3 2 88 000 7 7 333 6 777777 0 2 3
lowQualScore : . . . .. .. . . . . ......... .. . .. . . . ..... . . .. . . . .... ........ .. .. . ................................................................... .. . . . .......... . . .. ... . .... ... . ....... .. . .... . . . . .... . . .. ... . . ... . ...... . . .
lowQualScore : 4 4 4 11 22 0 0 0 0 111111111 55 3 55 0 0 2 77777 7 7 88 6 0 0 9999 11111111 99 99 7 5555555555555555555555555555555555555555555555555555555555555555555 22 2 8 5 2222222222 0 7 00 000 3 3333 333 3 3333333 00 0 5555 0 0 0 0 8888 2 5 33 000 7 3 333 0 777777 8 5 2
consensus : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-CAA-TGGAAAA-AGAAATAC-TATGTACATTTGTAT-AT-ATAAA-ACAAAA-GAGACATAT---ACAT--------AGTCATTTT--CAGGAAAAGACAG-C------------------AAAAAAAGGAAAGGTGTAGA-T-TAGGCCT-------T-----------GG-TTATGGAGGACAGACTAGAT--C---AT--ATTTTTGTTATAAACATGCACNGGTTTCTAA--NTTTT-TT----AACA---CTTGAAG-----A-AGACATNAATTCTTGAAAANNNAACTACAATTTGGCTTTGAACAGTACCTAGGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATT---TGCATTCTAANATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTAC-GAGCGTACAAAATCTTTGATTTAAAGGAATATTTGCCCAC
Reference ( gi|2 ) : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-GTAT--AACATATTA-TAA-TGGAAAA-AGAAATACATATGTACATTTGTAT-AT-ATAAA-ACAAAA-GAGACATAT---GCAT--------AGTCATTTT--CAGGAAAAGACAG-C------------------AAAAAAAAGAAAGGTGTATA-T-TAGGCCT-------T-----------GG-TTATGGAGGACAGACTAGAT--C---AT--ATTTTTGTTATAAACATGCACATGTTTCTAA--CTTTT-TT----AACA---CTTGAAG-----G-AGACATCAATTCT-GAAAATTTGATTATA-TTTGGCTTTGAACAGTATCTAAGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATTCAATGCATTCTAATATGAAATGAAATTCG---TCTGCAATTTGGTTTGAATTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCAC
gi|4 : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-CAA-TGGAAAA-CGAAATACATAAGTACATTTG--T-AT-ATAAA-ACAAAA-GAGACATAT---ACAT--------AGTCATTTT--CAGGAAAAGACAG-C------------------AAAAAAA----------------TGGG----------------------GG--TATGGAGGACAGAATAGATCAC---AT--ATTTTTGTTATAAA
gi|3 : gTTCACAGTTT-CTTTATTCAT-TCACAA--CATCA-ATAATTGAT-AC---T-GTGGTCA--ATA--ATAT--AATATATTA-CAA-CTGGAGA-AGTAATAACTATGT-CATTT------------A-ACAAAA-GAGACATAT---ACAC--------AATCATTTTTCCATGTAAAGACAGGC------------------AAAAAA------GGTGTAGAAT-TAGGCCT-------TCCTGCTGCATGGG-TTATGG--GACAGACTG-----------------TT-TTAAAAACATGCACAGGTTTCTAT--GTTTT-TT----AACAACACT--AAA-----A-AGACA-AAATTCTTAAAAACTAAATTATAATTTGGCTTTGAACAGTCCCTAGGATG-TACAAAT---TG-TTTCTTAAAaaatatctagttgttattttcttattaaaagattaataattaagtgatttg
gi|6 : aggTTCA-AGATT-CTTTATTCAT-TCACAC--CAATA-GTAATTGGT-AC-A-TTGAGGTCAT-A-----------------TA-CAA-TGGAAAAGATAAATACCTATGAACATTTATATTAT-ATAAA-ACAAAA-GAGACA-AT---ACAT--------AGTCATTTT--CA-GAAAAGACAG-CAAAAAAAAAAAAAAGAAGAAAAAAAAAAAAGATGTATA-TATAAGGCT-------G-----------GA-TTATGGAGGACAGA-GAGAT--CATTAT--ATTTT
gi|5 : agTCA-AGTTT-CTTTA-TCACTTCACACAACAATA-AT-ATT-GT-AC-AGT-GA-GTCAT-ACATGGTAT---ATATATTA-CAA-TGGAAAA-AGAAA-AC-TAT-T-CATTGATAT-AT-GTAA
gi|13 : TCA-AGATTATTTTATTT---TCACAT--CAAT---TA-TTGGT-AC-A-T-GAGGTAA----A----AT--AATACATTA-CAA-TGGAAAA-AGTAATACATATGTACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtttctaactttttttaacacttgaagaagacatcaattc
gi|1 : CA-AGTTT-CTTTATTCAC-TCACGC--CATCA-ATAATTTGT-AC-A-T-GAAGTCA----A----AT--AATATATTA-CAA-TGGAAAA-AGTAATAGATATGTACATGTGTAT-AT-ATAAA-ACAAAA-GATACATAT---ACAT--------AATCACTTT--CA--AATAGACAG-C------------------AGA------AAAGATGTAGA-T-TAGACCTTCATGTCT-----------GGTTTATAGAGGACAGACTAGAT--C---ATAAAGTTTTGCTATAAATATGCACTGGTTTCTAAGGTTTTT-TTTTAAAACA---CTTGAAGTACATGTAGACATTAAATCT-GAAAAAGTAACTACA-TTTGGCTTTGAACAGTACCTGGGATG-TAAAAAT---TGTGTTCTTAAAGCG--TATAATGATT---TGCATTCTAAGATAAAATGAAATTCG---TCTACAATTTGGTTTGAACTAC--AGTGTTCAAAATCTTTGATTTAAAGGGATATTTGCCCAC
gi|10 : A-AGTTT-TTTAATTCAC-TCTCAC---AATA-ATAACTGGTTAC-A-T-GAGGTCAT-ACAT-A-AT--AATACATTACTAA-TGGAAAA-AGAA------ATGT-CA--TGTAT-----TAAA-AAAAAA-GAAAAATAccgcctttctctactgggaaccggtgattcgatggtctaaatttgataaatatt
gi|11 : ttgactA-AGTTT---TTATTCAC-TCTCAC--CAATATAAAACTGGT-AC-A-T-G-GGTCAT-ACAT-A-AT--AATACATTA-CAA-TGG-AAA-AGAA---------------TGTAT-GT-AT--A-ACAAAA-GAGACATAac
gi|9 : ttgactA-AGTTT-CTT------C-CCA------AATA--TACTTG-T-AC-A-T-GAG-TCATTACAT-GTATTGAA-ATATTAACAA-TGAAAGA-AGAAAT---TATGACCATTTGTAT-CTTATAAACACCAAATGAG-CGT-T---AGAT--------AGTTATTTT--CAG--ACAGACAG-C------------------ATAAAAAAG------GTATA-T-catt
gi|14 : T-ACGA-T-GAGGTCA----A----AT--AATATATTA-CAAACGGAAAA-A----------TGTACATT------AT-ATAAA-ACAAAA-GAGACATAT---TCAT--------AGTCA-CTT--CAG
gi|12 : ATGTACATTTGTAT-AT-ATAAA-ACATTA-GAGACATATTATACAT--------AA-CAT-------GCATAATATA--C------------------ATAAACGGAAAAGGTGTAGA-T-TAGGCCT-------T-----------at
gi|15 : aaTAT-AT-ATAAA-ACAAAA-GAGACATAT---ACATCTGTACATAGTCATTTT--CAGGAAAAGATAG-T------------------AAAAAAAGGca
gi|5 : GTTTCTAA--CTTTTTTT----AACA---CTTGAAG-----A-AGACATCAATTC
gi|7 : tcaagtttctttatcacttcacacaacaataatattgtacagtgagtcatacatggtatatatattacaatggaaaaagaaaactattcattgatatatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagGCTTAGAACAATACCTAGGATG-TAAAAAAAAATGTTTTCTTAGACCG--CATAATGATT---TGCATTCTAATATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAAC-TACGGAGT-----GTACAAAGGATTATTTGCCCAC
gi|8 : ATGATAAAAAC---CCTTTT---AAGGCAAACATAAGAATT---TTCTTTCTAAAGTGAAATGAA-TTCGGTCTTTGCAATTTGGTTTGAACTAC-GA-TGTACAAACCCTTTGATTTAAAGGAATA-TTGCCCACctgccttgtctctactggaagccagtgattcgatgttctaaatttaataaatatt
gi|16 : taACAAAATCTTTGATTTAAAGGAATATTTACCCACctgtccctgtctctactgggagctggttgattcgattttctattttaaaatatt
Alignments
lowQualScore : 333333333 222222 11111111 4444444444444444444444 55555555555 222222 111 22222 1 11 111 2222222 11 111 111 11 111 111 222222
lowQualScore : 4 4 4 55 4 3 3 3 3 333333333 55 3 3 3 3 0 999999 7 777 3 3 666 66666666 66 8 5 55 2222222222222222222222 2 888 2 33333333333 0 8 0 5 000000 111 2 1 22222 0 33 777 3 9999999 44 44 333 0 555 8 444 0 33 777 1 3 777 444444 0
lowQualScore : . . . .. . . . . . ......... .. . . . . . ...... . ... . . ... ........ .. . . .. ...................... . ... . ........... . . . . ...... ... . . ..... . .. ... . ....... .. .. ... . ... . ... . .. ... . . ... ...... .
lowQualScore : 0 0 0 55 0 6 6 6 6 111111111 00 6 6 6 6 3 333333 2 000 6 6 444 11111111 11 8 0 44 6666666666666666666666 5 333 5 33333333333 8 0 8 0 000000 666 5 0 22222 0 88 555 2 8888888 22 77 000 7 333 0 000 8 88 555 0 2 555 555555 8
consensus : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-AGAAATA-C-TATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAG-----------GAAAGGTGTAGA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACAGGTTTCTAAN----TTTT-TTAA--CA---CTTGAAG---A---AGACATCAATTCTTGAAAANTTAATTATAATTTGGCTTTGAACAGTACCTAGGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATT---TGCATTCTAANATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCAC
Reference ( family-424 ) : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-AGAAATA-C-TATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAG-----------GAAAGGTGTAGA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACNGGTTTCTAAN----TTTT-TTAA--CA---CTTGAAG---A---AGACATNAATTCTTGAAAANNNAACTACAATTTGGCTTTGAACAGTACCTAGGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATT---TGCATTCTAANATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTAC-GAGCGTACAAAATCTTTGATTTAAAGGAATATTTGCCCAC
gi|1 : CA-AGTTT-CTTTATTCAC-TCACGC--CATCA-ATAATTTGT-AC-A-T-GAAGTCA-------A-AT--AATATATTA-C-AA-TGGAAAA-AGTAATA-GATATGTACATGTGTAT-A-TATAAA-ACAAAA-GATACA---TATACA--------TAATCACTTT--CA--AATAGACAG-CA--------------G-----------AAAAGATGTAGA-T-TAGACCTTCATGTCT----GGTTTATAGAGGACAGACTAGAT--C---ATAAAGTTTTGCTATAAATATGCACTGGTTTCTAAGGTTTTTTT-TTAAAACA---CTTGAAGTACATGTAGACATTAAATCT-GAAAAAGTAACTACA-TTTGGCTTTGAACAGTACCTGGGATG-TAAAAAT---TGTGTTCTTAAAGCG--TATAATGATT---TGCATTCTAAGATAAAATGAAATTCG---TCTACAATTTGGTTTGAACTAC--AGTGTTCAAAATCTTTGATTTAAAGGGATATTTGCCCAC
gi|10 : A-AGTTT-TTTAATTCAC-TCTCAC---AATA-ATAACTGGTTAC-A-T-GAGGTCAT-ACAT-A-AT--AATACATTA-CTAA-TGGAAAA-AGAA-------ATGT-CA--TGTAT-----TAAA-AAAAAA-GAAAAA---TAccgcctttctctactgggaaccggtgattcgatggtctaaatttgataaatatt
gi|11 : ttgactA-AGTTT---TTATTCAC-TCTCAC--CAATATAAAACTGGT-AC-A-T-G-GGTCAT-ACAT-A-AT--AATACATTA-C-AA-TGG-AAA-AGAA----------------TGTAT-G-TAT--A-ACAAAA-GAGACA---TACAac
gi|12 : ttgactATGTACATTTGTAT-A-TATAAA-ACATTA-GAGACATATTATACA--------TAA-CAT-------GCATAATATA--CA-TAAA-------CGG-----------AAAAGGTGTAGA-T-TAGGCCTT-----------tt
gi|13 : aaTCA-AGATTATTTTATTT---TCACAT--CAAT---TA-TTGGT-AC-A-T-GAGGTAA-------A-AT--AATACATTA-C-AA-TGGAAAA-AGTAATA-CATATGTACAca
gi|14 : T-ACGA-T-GAGGTCA-------A-AT--AATATATTA-C-AAACGGAAAA-A-----------TGTACATT------A-TATAAA-ACAAAA-GAGACA---TATTCA--------TAGTCA-CTT--CAG
gi|15 : TAT-A-TATAAA-ACAAAA-GAGACA---TATACATCTGTACATAGTCATTTT--CAGGAAAAGATAG-TA-AAAA-------AAG-----------Gat
gi|16 : ACAAAATCTTTGATTTAAAGGAATATTTACCCAC
gi|2 : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-GTAT--AACATATTA-T-AA-TGGAAAA-AGAAATA-CATATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATGCA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAA-----------GAAAGGTGTATA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACATGTTTCTAAC----TTTT-TTAA--CA---CTTGAAG---G---AGACATCAATTC-TGAAAATTTGATTAT-ATTTGGCTTTGAACAGTATCTAAGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATTCAATGCATTCTAATATGAAATGAAATTCG---TCTGCAATTTGGTTTGAATTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCACctgcctatctctactgggagtcggtgattcgat
gi|3 : TTCACAGTTT-CTTTATTCAT-TCACAA--CATCA-ATAATTGAT-AC---T-GTGGTCA--ATA--ATAT--AATATATTA-C-AA-CTGGAGA-AGTAATAAC-TATGT-CATTT------------A-ACAAAA-GAGACA---TATACA--------CAATCATTTTTCCATGTAAAGACAGGCA-AAAA-------A-----------------GGTGTAGAAT-TAGGCCTTCCTGCTGCATGGGTT-ATGG--GACAGACTG-----------------TT-TTAAAAACATGCACAGGTTTCTATG----TTTT-TTAA--CAACACT--AAA---A---AGACA-AAATTCTTAAAAACTAAATTATAATTTGGCTTTGAACAGTCCCTAGGATG-TACAAAT---TG-TTTCTTAAA
gi|4 : aggTTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-CGAAATA-CATAAGTACATTTG--T-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AA---------------------------TGGG---------------GG-T-ATGGAGGACAGAATAGATCAC---ATA--TTTTTGTTATAAA
gi|5 : gTCA-AGTTT-CTTTA-TCACTTCACACAACAATA-AT-ATT-GT-AC-AGT-GA-GTCAT-ACATGGTAT---ATATATTA-C-AA-TGGAAAA-AGAAA-A-C-TAT-T-CATTGATAT-A-TGTAAaaatatctagttgttattttcttattaaaagattaataattaagtgatttg
gi|5 : GGTTTCTAAC----TTTTTTTAA--CA---CTTGAAG---A---AGACATCAATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtttctaactttttttaacacttgaagaagacatcaattc
gi|6 : tcaagtttctttatcacttcacacaacaataatattgtacagtgagtcatacatggtatatatattacaatggaaaaagaaaactattcattgatatatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaTTCA-AGATT-CTTTATTCAT-TCACAC--CAATA-GTAATTGGT-AC-A-TTGAGGTCAT-A-----------------TA-C-AA-TGGAAAAGATAAATA-CCTATGAACATTTATATTA-TATAAA-ACAAAA-GAGACA----ATACA--------TAGTCATTTT--CAG-AAAAGACAG-CA-AAAAAAAAAAAAAGAAGAAAAAAAAAAAAGATGTATA-TATAAGGCTG-----------GATT-ATGGAGGACAGA-GAGAT--CATTATA--TTTT
gi|7 : agGCTTAGAACAATACCTAGGATG-TAAAAAAAAATGTTTTCTTAGACCG--CATAATGATT---TGCATTCTAATATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAAC-TACGGAGT-----GTACAAAGGATTATTTGCCCAC
gi|8 : ATGATAAAAAC---CCTTTT---AAGGCAAACATAAGAATT---TTCTTTCTAAAGTGAAATGAA-TTCGGTCTTTGCAATTTGGTTTGAACTAC-GA-TGTACAAACCCTTTGATTTAAAGGAATA-TTGCCCACctgccttgtctctactggaagccagtgattcgatgttctaaatttaataaatatt
gi|9 : taA-AGTTT-CTT------C-CCA------AATA--TACTTG-T-AC-A-T-GAG-TCATTACAT-GTATTGAA-ATATTAAC-AA-TGAAAGA-AGAAAT----TATGACCATTTGTAT-CTTATAAACACCAAATGAG-CG---T-TAGA--------TAGTTATTTT--CAG--ACAGACAG-CATAAAA-------AAG-----------Gctgtccctgtctctactgggagctggttgattcgattttctattttaaaatatt
Alignments
lowQualScore : 333333333 222222 11111111 4444444444444444444444 55555555555 222222 111 22222 1 111 11 2222222 11 11 111 11 111 111 1
lowQualScore : 4 4 4 55 4 3 3 3 3 333333333 55 3 3 3 3 0 999999 7 777 3 3 666 66666666 66 8 5 55 2222222222222222222222 2 888 2 33333333333 0 8 0 5 000000 111 2 22222 0 777 33 3 9999999 33 44 1 44 8 444 0 33 777 1 3 777 5 6 2 0
lowQualScore : . . . .. . . . . . ......... .. . . . . . ...... . ... . . ... ........ .. . . .. ...................... . ... . ........... . . . . ...... ... . ..... . ... .. . ....... .. .. . .. . ... . .. ... . . ... . . . .
lowQualScore : 0 0 0 55 0 6 6 6 6 111111111 00 6 6 6 6 3 333333 2 000 6 6 444 11111111 11 8 0 44 6666666666666666666666 5 333 5 33333333333 8 0 8 0 000000 666 5 22222 0 555 88 2 8888888 55 77 0 77 0 000 8 88 555 0 2 555 5 5 5 8
consensus : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-AGAAATA-C-TATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAG-----------GAAAGGTGTAGA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACAGGTTTCTAAN----TTT-TTT---AA--CACTTGAAG---A---AGACATCAATTCTTGAAAANTTAATTATAATTTGGCTTTGAACAGTACCTAGGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATT---TGCATTCTAANATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCAC
Reference ( family-424 ) : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-AGAAATA-C-TATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAG-----------GAAAGGTGTAGA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACAGGTTTCTAAN----TTT-TTT---AA--CACTTGAAG---A---AGACATCAATTCTTGAAAANTTAATTATAATTTGGCTTTGAACAGTACCTAGGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATT---TGCATTCTAANATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCAC
gi|1 : CA-AGTTT-CTTTATTCAC-TCACGC--CATCA-ATAATTTGT-AC-A-T-GAAGTCA-------A-AT--AATATATTA-C-AA-TGGAAAA-AGTAATA-GATATGTACATGTGTAT-A-TATAAA-ACAAAA-GATACA---TATACA--------TAATCACTTT--CA--AATAGACAG-CA--------------G-----------AAAAGATGTAGA-T-TAGACCTTCATGTCT----GGTTTATAGAGGACAGACTAGAT--C---ATAAAGTTTTGCTATAAATATGCACTGGTTTCTAAGGTTTTTT-TTT---AAAACACTTGAAGTACATGTAGACATTAAATCT-GAAAAAGTAACTACA-TTTGGCTTTGAACAGTACCTGGGATG-TAAAAAT---TGTGTTCTTAAAGCG--TATAATGATT---TGCATTCTAAGATAAAATGAAATTCG---TCTACAATTTGGTTTGAACTAC--AGTGTTCAAAATCTTTGATTTAAAGGGATATTTGCCCAC
gi|10 : A-AGTTT-TTTAATTCAC-TCTCAC---AATA-ATAACTGGTTAC-A-T-GAGGTCAT-ACAT-A-AT--AATACATTA-CTAA-TGGAAAA-AGAA-------ATGT-CA--TGTAT-----TAAA-AAAAAA-GAAAAA---TAccgcctttctctactgggaaccggtgattcgatggtctaaatttgataaatatt
gi|11 : ttgactA-AGTTT---TTATTCAC-TCTCAC--CAATATAAAACTGGT-AC-A-T-G-GGTCAT-ACAT-A-AT--AATACATTA-C-AA-TGG-AAA-AGAA----------------TGTAT-G-TAT--A-ACAAAA-GAGACA---TACAac
gi|12 : ttgactATGTACATTTGTAT-A-TATAAA-ACATTA-GAGACATATTATACA--------TAA-CAT-------GCATAATATA--CA-TAAA-------CGG-----------AAAAGGTGTAGA-T-TAGGCCTT-----------tt
gi|13 : aaTCA-AGATTATTTTATTT---TCACAT--CAAT---TA-TTGGT-AC-A-T-GAGGTAA-------A-AT--AATACATTA-C-AA-TGGAAAA-AGTAATA-CATATGTACAca
gi|14 : T-ACGA-T-GAGGTCA-------A-AT--AATATATTA-C-AAACGGAAAA-A-----------TGTACATT------A-TATAAA-ACAAAA-GAGACA---TATTCA--------TAGTCA-CTT--CAG
gi|15 : TAT-A-TATAAA-ACAAAA-GAGACA---TATACATCTGTACATAGTCATTTT--CAGGAAAAGATAG-TA-AAAA-------AAG-----------Gat
gi|16 : ACAAAATCTTTGATTTAAAGGAATATTTACCCAC
gi|2 : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-GTAT--AACATATTA-T-AA-TGGAAAA-AGAAATA-CATATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATGCA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAA-----------GAAAGGTGTATA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACATGTTTCTAAC----TTT-TTT---AA--CACTTGAAG---G---AGACATCAATTC-TGAAAATTTGATTAT-ATTTGGCTTTGAACAGTATCTAAGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATTCAATGCATTCTAATATGAAATGAAATTCG---TCTGCAATTTGGTTTGAATTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCACctgcctatctctactgggagtcggtgattcgat
gi|3 : TTCACAGTTT-CTTTATTCAT-TCACAA--CATCA-ATAATTGAT-AC---T-GTGGTCA--ATA--ATAT--AATATATTA-C-AA-CTGGAGA-AGTAATAAC-TATGT-CATTT------------A-ACAAAA-GAGACA---TATACA--------CAATCATTTTTCCATGTAAAGACAGGCA-AAAA-------A-----------------GGTGTAGAAT-TAGGCCTTCCTGCTGCATGGGTT-ATGG--GACAGACTG-----------------TT-TTAAAAACATGCACAGGTTTCTATG----TTT-TTTAACAA--CACT--AAA---A---AGACA-AAATTCTTAAAAACTAAATTATAATTTGGCTTTGAACAGTCCCTAGGATG-TACAAAT---TG-TTTCTTAAA
gi|4 : aggTTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-CGAAATA-CATAAGTACATTTG--T-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AA---------------------------TGGG---------------GG-T-ATGGAGGACAGAATAGATCAC---ATA--TTTTTGTTATAAA
gi|5 : gTCA-AGTTT-CTTTA-TCACTTCACACAACAATA-AT-ATT-GT-AC-AGT-GA-GTCAT-ACATGGTAT---ATATATTA-C-AA-TGGAAAA-AGAAA-A-C-TAT-T-CATTGATAT-A-TGTAAaaatatctagttgttattttcttattaaaagattaataattaagtgatttg
gi|5 : AGGTTTCTAAC----TTTTTTT---AA--CACTTGAAG---A---AGACATCAATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtttctaactttttttaacacttgaagaagacatcaattc
gi|6 : tcaagtttctttatcacttcacacaacaataatattgtacagtgagtcatacatggtatatatattacaatggaaaaagaaaactattcattgatatatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTTCA-AGATT-CTTTATTCAT-TCACAC--CAATA-GTAATTGGT-AC-A-TTGAGGTCAT-A-----------------TA-C-AA-TGGAAAAGATAAATA-CCTATGAACATTTATATTA-TATAAA-ACAAAA-GAGACA----ATACA--------TAGTCATTTT--CAG-AAAAGACAG-CA-AAAAAAAAAAAAAGAAGAAAAAAAAAAAAGATGTATA-TATAAGGCTG-----------GATT-ATGGAGGACAGA-GAGAT--CATTATA--TTTT
gi|7 : agGCTTAGAACAATACCTAGGATG-TAAAAAAAAATGTTTTCTTAGACCG--CATAATGATT---TGCATTCTAATATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAAC-TACGGAGT-----GTACAAAGGATTATTTGCCCAC
gi|8 : ATGATAAAAAC---CCTTTT---AAGGCAAACATAAGAATT---TTCTTTCTAAAGTGAAATGAA-TTCGGTCTTTGCAATTTGGTTTGAACTAC-GA-TGTACAAACCCTTTGATTTAAAGGAATA-TTGCCCACctgccttgtctctactggaagccagtgattcgatgttctaaatttaataaatatt
gi|9 : taA-AGTTT-CTT------C-CCA------AATA--TACTTG-T-AC-A-T-GAG-TCATTACAT-GTATTGAA-ATATTAAC-AA-TGAAAGA-AGAAAT----TATGACCATTTGTAT-CTTATAAACACCAAATGAG-CG---T-TAGA--------TAGTTATTTT--CAG--ACAGACAG-CATAAAA-------AAG-----------Gctgtccctgtctctactgggagctggttgattcgattttctattttaaaatatt
Alignments
lowQualScore : 333333333 222222 11111111 4444444444444444444444 55555555555 222222 111 22222 1 111 11 2222222 11 11 111 11 111 111 1
lowQualScore : 4 4 4 55 4 3 3 3 3 333333333 55 3 3 3 3 0 999999 7 777 3 3 666 66666666 66 8 5 55 2222222222222222222222 2 888 2 33333333333 0 8 0 5 000000 111 2 22222 0 777 33 3 9999999 33 44 1 44 8 444 0 33 777 1 3 777 5 6 2 0
lowQualScore : . . . .. . . . . . ......... .. . . . . . ...... . ... . . ... ........ .. . . .. ...................... . ... . ........... . . . . ...... ... . ..... . ... .. . ....... .. .. . .. . ... . .. ... . . ... . . . .
lowQualScore : 0 0 0 55 0 6 6 6 6 111111111 00 6 6 6 6 3 333333 2 000 6 6 444 11111111 11 8 0 44 6666666666666666666666 5 333 5 33333333333 8 0 8 0 000000 666 5 22222 0 555 88 2 8888888 55 77 0 77 0 000 8 88 555 0 2 555 5 5 5 8
consensus : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-AGAAATA-C-TATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAG-----------GAAAGGTGTAGA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACAGGTTTCTAAN----TTT-TTT---AA--CACTTGAAG---A---AGACATCAATTCTTGAAAANTTAATTATAATTTGGCTTTGAACAGTACCTAGGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATT---TGCATTCTAANATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCAC
Reference ( family-424 ) : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-AGAAATA-C-TATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAG-----------GAAAGGTGTAGA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACAGGTTTCTAAN----TTT-TTT---AA--CACTTGAAG---A---AGACATCAATTCTTGAAAANTTAATTATAATTTGGCTTTGAACAGTACCTAGGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATT---TGCATTCTAANATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCAC
gi|1 : CA-AGTTT-CTTTATTCAC-TCACGC--CATCA-ATAATTTGT-AC-A-T-GAAGTCA-------A-AT--AATATATTA-C-AA-TGGAAAA-AGTAATA-GATATGTACATGTGTAT-A-TATAAA-ACAAAA-GATACA---TATACA--------TAATCACTTT--CA--AATAGACAG-CA--------------G-----------AAAAGATGTAGA-T-TAGACCTTCATGTCT----GGTTTATAGAGGACAGACTAGAT--C---ATAAAGTTTTGCTATAAATATGCACTGGTTTCTAAGGTTTTTT-TTT---AAAACACTTGAAGTACATGTAGACATTAAATCT-GAAAAAGTAACTACA-TTTGGCTTTGAACAGTACCTGGGATG-TAAAAAT---TGTGTTCTTAAAGCG--TATAATGATT---TGCATTCTAAGATAAAATGAAATTCG---TCTACAATTTGGTTTGAACTAC--AGTGTTCAAAATCTTTGATTTAAAGGGATATTTGCCCAC
gi|10 : A-AGTTT-TTTAATTCAC-TCTCAC---AATA-ATAACTGGTTAC-A-T-GAGGTCAT-ACAT-A-AT--AATACATTA-CTAA-TGGAAAA-AGAA-------ATGT-CA--TGTAT-----TAAA-AAAAAA-GAAAAA---TAccgcctttctctactgggaaccggtgattcgatggtctaaatttgataaatatt
gi|11 : ttgactA-AGTTT---TTATTCAC-TCTCAC--CAATATAAAACTGGT-AC-A-T-G-GGTCAT-ACAT-A-AT--AATACATTA-C-AA-TGG-AAA-AGAA----------------TGTAT-G-TAT--A-ACAAAA-GAGACA---TACAac
gi|12 : ttgactATGTACATTTGTAT-A-TATAAA-ACATTA-GAGACATATTATACA--------TAA-CAT-------GCATAATATA--CA-TAAA-------CGG-----------AAAAGGTGTAGA-T-TAGGCCTT-----------tt
gi|13 : aaTCA-AGATTATTTTATTT---TCACAT--CAAT---TA-TTGGT-AC-A-T-GAGGTAA-------A-AT--AATACATTA-C-AA-TGGAAAA-AGTAATA-CATATGTACAca
gi|14 : T-ACGA-T-GAGGTCA-------A-AT--AATATATTA-C-AAACGGAAAA-A-----------TGTACATT------A-TATAAA-ACAAAA-GAGACA---TATTCA--------TAGTCA-CTT--CAG
gi|15 : TAT-A-TATAAA-ACAAAA-GAGACA---TATACATCTGTACATAGTCATTTT--CAGGAAAAGATAG-TA-AAAA-------AAG-----------Gat
gi|16 : ACAAAATCTTTGATTTAAAGGAATATTTACCCAC
gi|2 : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-GTAT--AACATATTA-T-AA-TGGAAAA-AGAAATA-CATATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATGCA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAA-----------GAAAGGTGTATA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACATGTTTCTAAC----TTT-TTT---AA--CACTTGAAG---G---AGACATCAATTC-TGAAAATTTGATTAT-ATTTGGCTTTGAACAGTATCTAAGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATTCAATGCATTCTAATATGAAATGAAATTCG---TCTGCAATTTGGTTTGAATTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCACctgcctatctctactgggagtcggtgattcgat
gi|3 : TTCACAGTTT-CTTTATTCAT-TCACAA--CATCA-ATAATTGAT-AC---T-GTGGTCA--ATA--ATAT--AATATATTA-C-AA-CTGGAGA-AGTAATAAC-TATGT-CATTT------------A-ACAAAA-GAGACA---TATACA--------CAATCATTTTTCCATGTAAAGACAGGCA-AAAA-------A-----------------GGTGTAGAAT-TAGGCCTTCCTGCTGCATGGGTT-ATGG--GACAGACTG-----------------TT-TTAAAAACATGCACAGGTTTCTATG----TTT-TTTAACAA--CACT--AAA---A---AGACA-AAATTCTTAAAAACTAAATTATAATTTGGCTTTGAACAGTCCCTAGGATG-TACAAAT---TG-TTTCTTAAA
gi|4 : aggTTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-CGAAATA-CATAAGTACATTTG--T-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AA---------------------------TGGG---------------GG-T-ATGGAGGACAGAATAGATCAC---ATA--TTTTTGTTATAAA
gi|5 : gTCA-AGTTT-CTTTA-TCACTTCACACAACAATA-AT-ATT-GT-AC-AGT-GA-GTCAT-ACATGGTAT---ATATATTA-C-AA-TGGAAAA-AGAAA-A-C-TAT-T-CATTGATAT-A-TGTAAaaatatctagttgttattttcttattaaaagattaataattaagtgatttg
gi|5 : AGGTTTCTAAC----TTTTTTT---AA--CACTTGAAG---A---AGACATCAATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtttctaactttttttaacacttgaagaagacatcaattc
gi|6 : tcaagtttctttatcacttcacacaacaataatattgtacagtgagtcatacatggtatatatattacaatggaaaaagaaaactattcattgatatatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTTCA-AGATT-CTTTATTCAT-TCACAC--CAATA-GTAATTGGT-AC-A-TTGAGGTCAT-A-----------------TA-C-AA-TGGAAAAGATAAATA-CCTATGAACATTTATATTA-TATAAA-ACAAAA-GAGACA----ATACA--------TAGTCATTTT--CAG-AAAAGACAG-CA-AAAAAAAAAAAAAGAAGAAAAAAAAAAAAGATGTATA-TATAAGGCTG-----------GATT-ATGGAGGACAGA-GAGAT--CATTATA--TTTT
gi|7 : agGCTTAGAACAATACCTAGGATG-TAAAAAAAAATGTTTTCTTAGACCG--CATAATGATT---TGCATTCTAATATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAAC-TACGGAGT-----GTACAAAGGATTATTTGCCCAC
gi|8 : ATGATAAAAAC---CCTTTT---AAGGCAAACATAAGAATT---TTCTTTCTAAAGTGAAATGAA-TTCGGTCTTTGCAATTTGGTTTGAACTAC-GA-TGTACAAACCCTTTGATTTAAAGGAATA-TTGCCCACctgccttgtctctactggaagccagtgattcgatgttctaaatttaataaatatt
gi|9 : taA-AGTTT-CTT------C-CCA------AATA--TACTTG-T-AC-A-T-GAG-TCATTACAT-GTATTGAA-ATATTAAC-AA-TGAAAGA-AGAAAT----TATGACCATTTGTAT-CTTATAAACACCAAATGAG-CG---T-TAGA--------TAGTTATTTT--CAG--ACAGACAG-CATAAAA-------AAG-----------Gctgtccctgtctctactgggagctggttgattcgattttctattttaaaatatt
blockSeqs : C A T AA T T G G T TACATGGT TG A T A G ATACA A TA C T TAT TCTGTACA TC C G TA AAAAAAAAAGAAGAAAAAAAAA G AT C CCTGCTGCATG . C CATT T G C T AAC . T G TC TT T AA A AAA AA CAA T A GTC A G G
blockSeqs : . . . . . . . . . TTACATGT . . . . . ATACA A CT . . . . . G . T CGGA T TA C . . C CAC T G G . . . T A TC T C A . . . . T A . A A G
blockSeqs : . . . . . . . . . TACATGT . . . . . ATAAC A G . . . . . G . A AAGG G T C . . A C T . C . . . . A A . . . . A . . . . .
blockSeqs : . . . . . . . . . TACATAT . . . . . ATACA A A . . . . . G . A AAAG T T G . . . . . . .
blockSeqs : . . . . . . . . . TACATA . . . . . ATACC A A . . . . . G . A AAGG . . . .
blockSeqs : . . . . . . . . . TACATA . . . . . AAC A A . . . . . . . A AA
blockSeqs : . . . . . . . . . ATAAT . . . . . AT C A . . . . . . . A A
blockSeqs : . . . . . . . . . TA . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . A . . .
blockSeqs : . . . . A . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : TACATAT** A* AAGG****************** *********** T**
originalCons : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-AGAAATA-C-TATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAG-----------GAAAGGTGTAGA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACAGGTTTCTAAN----TTT-TTT---AA--CACTTGAAG---A---AGACATCAATTCTTGAAAANTTAATTATAATTTGGCTTTGAACAGTACCTAGGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATT---TGCATTCTAANATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCAC
finalCons : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCATACATAT--AT--AATATATTA-C-AA-TGGAAAA-AGAAATA-C-TATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CAA-AAAAAGG------------------AAAGGTGTAGA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATAT--TTTTGTTATAAACATGCACAGGTTTCTAAN----TTT-TTT---AA--CACTTGAAG---A---AGACATCAATTCTTGAAAANTTAATTATAATTTGGCTTTGAACAGTACCTAGGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATT---TGCATTCTAANATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCAC
Alignments
lowQualScore : 333333333 222222 11111111 4444444444444444444444 55555555555 222222 111 22222 1 111 11 2222222 11 11 111 11 111 111 1
lowQualScore : 4 4 4 55 4 3 3 3 3 333333333 55 3 3 3 3 0 999999 7 777 3 3 666 66666666 66 8 5 55 2222222222222222222222 2 888 2 33333333333 0 8 0 5 000000 111 2 22222 0 777 33 3 9999999 33 44 1 44 8 444 0 33 777 1 3 777 5 6 2 0
lowQualScore : . . . .. . . . . . ......... .. . . . . . ...... . ... . . ... ........ .. . . .. ...................... . ... . ........... . . . . ...... ... . ..... . ... .. . ....... .. .. . .. . ... . .. ... . . ... . . . .
lowQualScore : 0 0 0 55 0 6 6 6 6 111111111 00 6 6 6 6 3 333333 2 000 6 6 444 11111111 11 8 0 44 6666666666666666666666 5 333 5 33333333333 8 0 8 0 000000 666 5 22222 0 555 88 2 8888888 55 77 0 77 0 000 8 88 555 0 2 555 5 5 5 8
consensus : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-AGAAATA-C-TATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAG-----------GAAAGGTGTAGA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACAGGTTTCTAAN----TTT-TTT---AA--CACTTGAAG---A---AGACATCAATTCTTGAAAANTTAATTATAATTTGGCTTTGAACAGTACCTAGGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATT---TGCATTCTAANATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCAC
Reference ( family-424 ) : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-AGAAATA-C-TATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAG-----------GAAAGGTGTAGA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACAGGTTTCTAAN----TTT-TTT---AA--CACTTGAAG---A---AGACATCAATTCTTGAAAANTTAATTATAATTTGGCTTTGAACAGTACCTAGGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATT---TGCATTCTAANATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCAC
gi|1 : CA-AGTTT-CTTTATTCAC-TCACGC--CATCA-ATAATTTGT-AC-A-T-GAAGTCA-------A-AT--AATATATTA-C-AA-TGGAAAA-AGTAATA-GATATGTACATGTGTAT-A-TATAAA-ACAAAA-GATACA---TATACA--------TAATCACTTT--CA--AATAGACAG-CA--------------G-----------AAAAGATGTAGA-T-TAGACCTTCATGTCT----GGTTTATAGAGGACAGACTAGAT--C---ATAAAGTTTTGCTATAAATATGCACTGGTTTCTAAGGTTTTTT-TTT---AAAACACTTGAAGTACATGTAGACATTAAATCT-GAAAAAGTAACTACA-TTTGGCTTTGAACAGTACCTGGGATG-TAAAAAT---TGTGTTCTTAAAGCG--TATAATGATT---TGCATTCTAAGATAAAATGAAATTCG---TCTACAATTTGGTTTGAACTAC--AGTGTTCAAAATCTTTGATTTAAAGGGATATTTGCCCAC
gi|10 : A-AGTTT-TTTAATTCAC-TCTCAC---AATA-ATAACTGGTTAC-A-T-GAGGTCAT-ACAT-A-AT--AATACATTA-CTAA-TGGAAAA-AGAA-------ATGT-CA--TGTAT-----TAAA-AAAAAA-GAAAAA---TAccgcctttctctactgggaaccggtgattcgatggtctaaatttgataaatatt
gi|11 : ttgactA-AGTTT---TTATTCAC-TCTCAC--CAATATAAAACTGGT-AC-A-T-G-GGTCAT-ACAT-A-AT--AATACATTA-C-AA-TGG-AAA-AGAA----------------TGTAT-G-TAT--A-ACAAAA-GAGACA---TACAac
gi|12 : ttgactATGTACATTTGTAT-A-TATAAA-ACATTA-GAGACATATTATACA--------TAA-CAT-------GCATAATATA--CA-TAAA-------CGG-----------AAAAGGTGTAGA-T-TAGGCCTT-----------tt
gi|13 : aaTCA-AGATTATTTTATTT---TCACAT--CAAT---TA-TTGGT-AC-A-T-GAGGTAA-------A-AT--AATACATTA-C-AA-TGGAAAA-AGTAATA-CATATGTACAca
gi|14 : T-ACGA-T-GAGGTCA-------A-AT--AATATATTA-C-AAACGGAAAA-A-----------TGTACATT------A-TATAAA-ACAAAA-GAGACA---TATTCA--------TAGTCA-CTT--CAG
gi|15 : TAT-A-TATAAA-ACAAAA-GAGACA---TATACATCTGTACATAGTCATTTT--CAGGAAAAGATAG-TA-AAAA-------AAG-----------Gat
gi|16 : ACAAAATCTTTGATTTAAAGGAATATTTACCCAC
gi|2 : TTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-GTAT--AACATATTA-T-AA-TGGAAAA-AGAAATA-CATATGTACATTTGTAT-A-TATAAA-ACAAAA-GAGACA---TATGCA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AAA-----------GAAAGGTGTATA-T-TAGGCCTT-----------GGTT-ATGGAGGACAGACTAGAT--C---ATA--TTTTTGTTATAAACATGCACATGTTTCTAAC----TTT-TTT---AA--CACTTGAAG---G---AGACATCAATTC-TGAAAATTTGATTAT-ATTTGGCTTTGAACAGTATCTAAGATG-TAAAAAT---TGTTTTCTTAAAGCG--CATAATGATTCAATGCATTCTAATATGAAATGAAATTCG---TCTGCAATTTGGTTTGAATTACAGAGTGTACAAAATCTTTGATTTAAAGGAATATTTGCCCACctgcctatctctactgggagtcggtgattcgat
gi|3 : TTCACAGTTT-CTTTATTCAT-TCACAA--CATCA-ATAATTGAT-AC---T-GTGGTCA--ATA--ATAT--AATATATTA-C-AA-CTGGAGA-AGTAATAAC-TATGT-CATTT------------A-ACAAAA-GAGACA---TATACA--------CAATCATTTTTCCATGTAAAGACAGGCA-AAAA-------A-----------------GGTGTAGAAT-TAGGCCTTCCTGCTGCATGGGTT-ATGG--GACAGACTG-----------------TT-TTAAAAACATGCACAGGTTTCTATG----TTT-TTTAACAA--CACT--AAA---A---AGACA-AAATTCTTAAAAACTAAATTATAATTTGGCTTTGAACAGTCCCTAGGATG-TACAAAT---TG-TTTCTTAAA
gi|4 : aggTTTCA-AGTTT-CTTTATTCAC-TCACAC--CAATA-ATAATTGGT-AC-A-T-GAGGTCAT-ACAT-ATAT--AATATATTA-C-AA-TGGAAAA-CGAAATA-CATAAGTACATTTG--T-A-TATAAA-ACAAAA-GAGACA---TATACA--------TAGTCATTTT--CAGGAAAAGACAG-CA-AAAA-------AA---------------------------TGGG---------------GG-T-ATGGAGGACAGAATAGATCAC---ATA--TTTTTGTTATAAA
gi|5 : gTCA-AGTTT-CTTTA-TCACTTCACACAACAATA-AT-ATT-GT-AC-AGT-GA-GTCAT-ACATGGTAT---ATATATTA-C-AA-TGGAAAA-AGAAA-A-C-TAT-T-CATTGATAT-A-TGTAAaaatatctagttgttattttcttattaaaagattaataattaagtgatttg
gi|5 : AGGTTTCTAAC----TTTTTTT---AA--CACTTGAAG---A---AGACATCAATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaggtttctaactttttttaacacttgaagaagacatcaattc
gi|6 : tcaagtttctttatcacttcacacaacaataatattgtacagtgagtcatacatggtatatatattacaatggaaaaagaaaactattcattgatatatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTTCA-AGATT-CTTTATTCAT-TCACAC--CAATA-GTAATTGGT-AC-A-TTGAGGTCAT-A-----------------TA-C-AA-TGGAAAAGATAAATA-CCTATGAACATTTATATTA-TATAAA-ACAAAA-GAGACA----ATACA--------TAGTCATTTT--CAG-AAAAGACAG-CA-AAAAAAAAAAAAAGAAGAAAAAAAAAAAAGATGTATA-TATAAGGCTG-----------GATT-ATGGAGGACAGA-GAGAT--CATTATA--TTTT
gi|7 : agGCTTAGAACAATACCTAGGATG-TAAAAAAAAATGTTTTCTTAGACCG--CATAATGATT---TGCATTCTAATATGAAATGAAATTCG---TCTGCAATTTGGTTTGAACTACAGAAC-TACGGAGT-----GTACAAAGGATTATTTGCCCAC
gi|8 : ATGATAAAAAC---CCTTTT---AAGGCAAACATAAGAATT---TTCTTTCTAAAGTGAAATGAA-TTCGGTCTTTGCAATTTGGTTTGAACTAC-GA-TGTACAAACCCTTTGATTTAAAGGAATA-TTGCCCACctgccttgtctctactggaagccagtgattcgatgttctaaatttaataaatatt
gi|9 : taA-AGTTT-CTT------C-CCA------AATA--TACTTG-T-AC-A-T-GAG-TCATTACAT-GTATTGAA-ATATTAAC-AA-TGAAAGA-AGAAAT----TATGACCATTTGTAT-CTTATAAACACCAAATGAG-CG---T-TAGA--------TAGTTATTTT--CAG--ACAGACAG-CATAAAA-------AAG-----------Gctgtccctgtctctactgggagctggttgattcgattttctattttaaaatatt