lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111 11111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 11 22 22 1 2 22222 33333 1 22 1 2222222 22222 22 111 11 22222222 2222222 111 11 1111 111 33333333 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 777777777777777777 1111111 222 1 111 4444444444 1 11 22 1 333333 333 1 55 2222 555555 222222222222222222222222222222 55 666 1 22222 777 1 1 1 00000 1 4 6666 55 22 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1111111 1 1 2222 111111 33333333 111 4444444444444 1111111 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 33333333333 2 2 1 111 1
lowQualScore : 3 4 2 2 4 4 5 666 3 88 88 77 4 77 4 55 0 4 2 0 4 99 77777 33333 7 3 6 22 5 3 0 3333333 1 44444 0 33 0 99 0 222 0 2 33 5 3 66666666 5 2 9 6 8 1 8888888 444 5 00 3333 444 8 3 1 4 99999999 0 6 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444 55 1 333333333333333333 3 6666666 999 8 8 6 0 6 1 0 333 2222222222 8 1 4 11 00 1 8 8 7 444444 2 000 4 55 6 7 55 8888 6 666666 222222222222222222222222222222 55 6 111 7 66666 000 5 7 5 00000 6 5 0 1111 55 33 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7777777 5 2 0 2 3333 2 555555 4 9 33333333 5 111 9 2 6 7 4 1111111111111 7777777 2 2 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 77777777777 3 0 0 2 5 666 2 7 2 6 6 2
lowQualScore : . . . . . . . ... . .. .. .. . .. . .. . . . . . .. ..... ..... . . . .. . . . ....... . ..... . .. . .. . ... . . .. . . ........ . . . . . . ....... ... . .. .... ... . . . . ........ . . ...................................................................................... .. . .................. . ....... ... . . . . . . . ... .......... . . . .. .. . . . . ...... . ... . .. . . .. .... . ...... .............................. .. . ... . ..... ... . . . ..... . . . .... .. .. ................................................................................................................................................ ....... . . . . .... . ...... . . ........ . ... . . . . . ............. ....... . . ............................................................................................................................ ........... . . . . . ... . . . . . .
lowQualScore : 0 0 5 5 0 0 0 555 0 55 55 55 0 55 0 55 5 0 5 0 0 00 00000 33333 7 3 7 77 0 0 7 7777777 0 00000 2 88 2 55 2 555 8 5 88 0 2 22222222 0 8 6 2 0 4 6666666 000 0 00 2222 000 0 2 4 6 88888888 0 5 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888 88 8 666666666666666666 2 8888888 000 4 2 6 8 4 4 0 888 0000000000 0 8 6 00 88 4 2 4 0 333333 5 555 0 00 0 0 00 0000 0 000000 000000000000000000000000000000 00 0 000 0 00000 000 0 0 0 00000 0 0 0 0000 00 00 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0000000 3 3 8 2 8888 8 222222 6 1 44444444 1 111 3 7 0 8 3 8888888888888 9999999 8 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 77777777777 0 0 0 5 0 000 5 0 5 0 0 5
consensus : GCNAGTGTCTTNTTGAANCNCTCNACCATNCCGTCTGACTTAGGATGGTGCGGCGTNGTNCGGGTCTTCTTNATACCGAAANGTACTTGCACACNCCANCGAACAANCGACTCTCANACTGGGTNCCTCTGGTCNGNATGGATCTGCTATA-----CGGCACGCCAAATCGAGTAAGGACCTGTTCNACAATTAT-TNTGCTACTGTT--TCGGCCTCCATGTTTTGC-A-TGGGAAA--GCTTTCTGTCCACTTGGNGAAGTAGTCTGATACA--ACTAAGATGTATCTGTTGCCTCTN-TCCGTCGCGGGTAATTCNC-CAAG------TAT---ATCCGTNGCTA--TTCGTT---C-CATCGGAGCACCAG---TTTNNACT-ATCTGCATTGGNGCTCGTT--TT-GTTNCGTTGA--G-GG-----TTTCCTGNTGCATTTATCACANC---CAGCT----ACG-AT--GC----ATCT-ACTGNAGTCCAGGCCAGTAATAAT-CGCTCTTTA---GTCTTCGNCACAGTCTTNCGCACCCCTAGATGACCAGACGATCTCTCGT--CGTGNTNTTG-TC-TAGA-ACTGTTCGTCGCTC--ACTNTATGGAACAACCGCCTGCA---GTTTTGTACCTTTNCTGNGACTNCCCATCGNCGGTATAACATGTCCTTGTCTACTTTCAAATGCTCGAACTGAGACCACAAAGAC--AAGGACTCGTCCTTCACTACTGATACCTGAGTAACTAGGCTTCCA-GCC-ATCCATTACCCATGA-----TTTTACTAAATTT--ATTCACAGTGCCATCATTTTTTTTTGAAGGCTCTCCATGGACA--TTGATCCTAGCTCTTTAGCCTTAA---TGTGGGAAACAAACTGGGCGAACACTCT-----TCTCCAGTCCCTAG-TGAATCCACATTGCT-TG-CAAGGTTTCC--GACTAGAGTGC-ATC--AG--CATTT--GTGTGGTT-AGCTTGC-CTGGNCGGTGTTCTGNCTCTNGTCATTTCGNGAATTGCTCAAA-GTCTCGAACCA-CG-G-AAGCCGT--CTG-CC-CCTCCGGGATTTTTT-GNAAGTC-TGAGCCA-ACCANCGTAANGAGCTGTGGTCTGTTCGAAC--CGTAAACTGCTTGCCATACA---GG-TAATGCTTGNAATATT-----TGGTAAAGTAGA-CAACTGCTAGNAGTTCCTTTCTNGTNACGCAGTACTTNCTC---TCGGCTTTTGTTAATGTTCTGCTAGCATAAGC-AATGAC-N-TTC-T--CA---CCATTT--N-GNTTCTGNGATAAGACA--GCGC----CN-ATCGGCA-C-GTC--ACTCGCGTCTGTATCCAGGATGAAT---------TGACTGCGA-AAATCTGG-ATGCGCAAAAACTGGGGCTNTAGCAAGAGCNTCTCTTCGACGTCCTCGAATGNCTGCTGACATTCCTCANTCCATAGC
Reference ( gi|1 ) : GCTAGTGTTTTATTAAAGCGCTCTACCATACAGTCTGACTTAGGATGATACGACGTTGTGTGGGTCTTCTTGGTACCGAAAAG--CTTGCATACTTCACTAAACAAACGACTCTCAAACTGAGTGCC-TTGGTCAGAGTGAAT-TGC-ATA-----CGGCACTCCTAATCGAGTAAGGACCTGTTGAACAATTATCTTTGCCACTGTC--TCGGCTTCCATGTTTTCT-A-TGGGAAA--GCTTTCTGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAAATGTATCTATTGCCCTTA-TCCGTCATGGGCAGCTCTC-CAAG------TAT---ATCGGTTGCTA--TGCGTT---C-CATCGGAGCACCGG---TTTGTACT-ATCTGCATTGGGGCTTCCT--TT-GCTACGTTGA--A-AACCTTTTTTCCTGCTGCATTTGTCACACC---CAACT----ATATATGCACGGACATCCGACTAAAGTCCTGGCCAGTAATAAC-----CTTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGACGATCTGTTGC--CGTGGTACTGGGC-TAAA-ACTGTATGCCGTTC--ACTTGATGGTACCACAGCCTGAA---GCGTTGTACCTTTGCTGT--CTACCCATTGGCGATATAATATGCCCTTGTCTACTTTCAAAAGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATAGCAAAGTAACTAGGCTTTCGTGCCAATCCATTACCCA-GAAGATTTTTTACTAAACTTTAATTT---GTGCCATCA--TTTTCTTGAAGGCTCTCCATGGACGATTTGATCCAAGCTCCCTTACCTTAACGTTGTCGGAAACATACTGGCCGAACACTCTATTACTCCCGAGTCCCTAGTTGAATCCACATTGCTGTGACAAGGTTTCCCGGACCTGAGTGCAATCGAAGCACATTTTAGTGTTGTTAAGCTTGCACTGGCCGATGTTC-AACTCTTGCCA-TTCGTATAT-GCTTCCGTGTCTCCAGCCA-CG-G-AAGCCATGATTGACCACCTCCGGGGTCTTTTGGAAAATC-TGAGGCATACCAGCGTAAAGAACTGTGGTCAGTGCGGAC--AGTAAATTGTTTGCCATACA---AG-TAATGTTTAAAATACC-----GGGTAAAATACA-CAACTGCAAGAAGTTCTTTTTTGGTTACGCAGTACTGGCGC---TCTGCTTTTGTCAAAGTTCGGCTGGCATATGCTACTGGC-CTCTCTT--CG---CCATTT--A-ACTTCTGAGATAAGACA--GCTC----CT-ATCGACA-C-GTT--GCTGGCGTCTGTGTCCAGAATAAAT------TCTTGATTG----AAATCTGGCATG-GCTAGCACTGGGGCTTT-ACAA-AGCCTCTCTTTGAGGTCCTGGAAAGCCTGTTGGCATTCCCCACTCCATAGC
gi|7 : GCTAGTGTTTTATTAAAGCGCTCTACCATTCCGTCTGACTTAGGATGATGCAGCTTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCAC-AAACAAGCGACTCTCAAACTGAGTGCCTTTGGTTAGAATGAAT-TGC-ATA-----CGACACGCTAAATCGAGTAAGGATCTGTTCAACAAGTATCT
gi|2 : tgttttggtcttcgtaaccttagacgatcaacatgaattaattacttggtatttaccacaaggcccacagtcaacttcatatagaggatctgttttcttattgattacagtctaaggacttctccaataactagtaaactttgggaaatggcctgctttccgctgcgaaaagaatacgtttgttaaatgcttgccattttaccttagcatcatggtaacgtttctgtctgcgcatttattggcctgtatgatgccttactgtactgtgcacttcttctaaacggacttttagctcccatatccacttcaatgctgaggtatatcactcacacttggtggcatttcatacataacgtctagaggtgtagcaacctctctaccaagcatgaatgagttcggggtgcaacctgtcgtctagtgctgtgctgaccagtaggccaccataacgtacggcaggtgaacatcccagtgtctttgatgttcatcaacgtaggtgctgagcattgttGCGAGTGTCTTTTTGAATCTTTCAACCATACCATCTGACTTAGGATGGTATGGTGTGGTCCGAGTTTTCTTTATAT--AAATGTACTTGCACATACCAGCGAACAACTGACTCTCATATTGGGTCCC-CTGGTCTGCATGGATCTATTATAGTCATTGGGACACCAAAGCGTGTGATGACTTGTTTCACACTAATGCGTGCTACAGTT--GTTGCCTCCATGTTTTGC-A-CTGGAAA--GCACCCTGTCCATTTAGAAAAGTAATCTACGACA--ACTAAGATATATTTGTTGCCTCTT-TCTGTTGCGGGTAATTCGC-CTGGGATGTTTATGCCATCGGTAGTCATCTTCATTGTGC-CATCGGAACACCCG----ATATAGTCATCTTCATTGTAGCTCCCTTGTT-TCTCAGTGGACTA-AG-------TTCGGTTGCAATTATCACAAC---CA---------------------ATC---TTGAAGCCCAGGCCAGTAGT-AC-----CTCT----GTCT-------AATTTTGCGCACGCCAAGGTGTCC---TGAGCACTTGT--CGTGG--CTCATCATAAGTGTTGTTCGTCTTTCCAACTT--TGGGAGTATGGCCTGCATTTTTTTTTTACCTTTTCTGGGACTTCCCATCTTCGGTATAACAT
gi|4 : tctggcgcagtatttcaaacggccccgatcaatagctagtcagcttcgacaagttgccaaattttctcgttgagaaaaacacatacactttatctcctttacctatcttttgccaatttagcttggcttcatggtaacgcttctgtctgcatttcgccatgaatatgaacagcattgtgtgcatcttgaagtctctacttcaatccccaggcccatcgtttttgaggaacttggtcgaggtcgcttggcatttggagtagccacctcttgaccaagagttaatgcattacgagtcttgtgttcagcagagagctacgtcatcatcaggcacgttaaatgcatagtcccgatgatgatcatcaacgtatgcacgcagcatgccgTA-----CGGCACTCCCAATCGAGTAAGACCCT-TTCTACAATTAT-TTTGCCACTGCCCTTCGGCTTCCATGTTTTTTCA-TGGGAAAAAGTTTT-TGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAAA-GTATCTATTGCCCTTAATCCATCATGGGCAGCTCTT-CAAG------TAC---ATCTGTGGCTA--TGCGTT---C-CATCGGAGCACCAG---TCTGCACT-ATCTGCATTGGGGCT-------------CGTT-------------TCTCCTGTTGCATTTGTCACACC---CAGCT----AT-------------TCTGACTGAAGTCATGGCCAGTAATAAT-----CTTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGATGATCTGTTGT--CGTGGTACTGGGC-TAAA-ATTGTACGCCGTTC--TCTTGATGGTACCACAGCCTGAA---GCTTTGTATCTTTGCTGT--TTATCCATTGGCGATATAATATGTCCTTGTCTACTTTCAAATGCTCGAACTGAGACCACAAAGAC--AAGGACTCGTCCTTCACTACTGATACCTGAGTAACTAGGCTTCCA-GCC-ATCCATTACCCATGA-----TTTTACTAAATTT--ATTCACAGTGCCATCATTTTTTTTTGAAGGCTCTCCATGGACA--TTGATCCTAGCTCTTTAGCCTTAA---TGTGGGAAACAAACTGGGCGAACACTCT-----TCTCCAGTCCCTAG-TGAATCCACATTGCT-TG-CAAGGTTTCC--GACTAGAGTGC-ATC--AG--CATTT--GTGTGGT--AGCTTGC-CTGGACGATGTTCTATCTCTT--CATTTCGTG----GCTC---NNNNNNNNNNNN-NN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNCCA-ACCAGCGTAAAGAACTGTGTTCAGTGCGGAC--GGTAAATTGTTTGCCATACA---AG-TAGTGCTTAAAATACC-----TGGTAAAATACA-CTACTGCAAGAGGTTCTTTTCTGATCACACAGTACTGGCGC---TCTGCTTTCGTCAA
gi|12 : TGCTACTGTT--TCA-CCTCCATATCTTGC-AGTGGGAAC--GCTT-CTGTCCATTTTGTGAAATAATCGGACACT--ACAAGTATGTGGCGATTATCTCTG-TCCGTCTCAGATAATTCACATAAA-------AT---GTCGGTCGCTA--TTCTCT---C-CATAGGGGTACCAG---ATT
gi|9 : aattatttgctccattattgtgcg-A-TAGGCAAT-GGTTTCCGTCCACTTGGTAAAATAGTCTGATA-ATTACTAAGATGTATCTGTT----T---TCTGTTGTAGGTAA-TCAC-CAAG------GAT---GTCCA-TGCTA--CTCGTT---CACATTGGAAAACCGG---CTCCAACT-ATTTGTATTGGTGCGCGTT--TTAGTTTTGTTGA------------TACTTGGCGCCTTGAGCAAACCATACAGCCTGCAATGTATTGGCGTACATCTTTCTGCAGCCCAGGCCAGTAGTAActtgcgcatagtacactattcacatagggaaatgtactgatgaatatccttttgaagatcaggccaatattacttttgcctgatgttgcctattgttttagtcacacccaagtgtcctg
gi|14 : cctggtctaatgtagtgcaatagcacatgtactccgatattgttcaatgtttctttaatgatatatctgcaccagttttttctcgaatctttggGTAGTTCTC-CTCG------TAT---ATCTGTAGCAA--TAAGTT---C-CATACGCGTACCAGAAGTT---ACA-ACTTGCATCGGCGCCCGTT--TG-GTTGTATTGG--GTGATTTTCTTTTCTGAT--ATTTTTCACAGC---C---T----ACA-ATGTAC---------ATTATAGTCAAGGTCAATAA-AATGCATTCTTCA----TCTTCTGTTCA--CTT---TACCCCTAGATGACCAGACGTTCTCTCGT--CATGCTTTT-----TAGA-ACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGgactgtcttattttgctcagggtttttctgatgcctaaatgacctgcggtttctgatcatgagtatactggaggacattctacgctgattcattggaatcactgctttggtctttatttttcagtcatctaaacaacatatccagaataact
gi|6 : tatgtacaccaAGTCCAGGCTAATAA-AATTTGCTCTTTA----TCTTCGCCAAGGTCTTCTTTACCCCTAAATGACCAGA--ATTTCTTTCATCGTGATATTGTTC-CAGT-ACTGTTCGATGCTC--ACTATATGGAACAACCGCCTGCA---GTACTG
gi|13 : ttttgtACCCCTAGATGACCAGACGTTCTCTCGT--CATGCTTTT-----TAGA-ACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGagttatttccctgatatttcttcctccgaaacaacatatcctgattgaaaactaaagagtcccactgagaacagatagccttgacaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggcttttttacagggtaatctactcaatgcatcagcatttgtgtggtttttacctggtcggtgttcgatggtcatttcaaaattgcttaaagtctcaaaccaacgtgcaagttgtccttcgggatttttgcagttcattaaccatttcagtgagctgtggcctgttcgaaccaaataactgcttgccatacagataatggttgtaatatttggtaaagtaggcaactgctaagagttccttccttgttacgcaatattttctctcagcatttgataatgttctgctagcataagcaatgacacgttcaacaccattttgattctgtgaaagcattgcaccgatcgcagcatcactcatccagtat
gi|6 : tatagtcaaggtcaataaaatgcattcttcatcttctgttcactttCATTT--GTGTGGTT---TTTAC-CTGGTCGGTGTTC-GA---TGGTCA-TTTCAAAATTGCTTAAA-GTCTCAAACCAACGTGCAAGTTGT---------CCTTCGGGATTTTT--GCAGTTCATTAACCATTTCAGTG-----AGCTGTGGCCTGTTCGAACCAAATAA-CTGCTTGCCATACA---GA-TAATGGTTGTAATATT-----TGGTAAAGTAGG-CAACTGCTAAGAGTTCCTTCCTTGTTACGCAATATTTTCTC---TCAGCATTTGATAATGTTCTGCTAGCATAAGC-AATGACACGTTCAA--CA---CCATTT--T-GATTCTGTGA-AAG-CATTGCAC----CG-ATCGttttcttcttccgaatcatatcctgattttaaaaaaaataaagtgtctcatcgtgaacagatgaccttgataaaattatttccacatggtataagttataaccgtataaagttctgcgaggatgtgggtttcacgtcatcagcaatcccctttatgatgagactgcaatgtcc
gi|3 : ttttgtagtccaggctaataaaatttgctctttatcttcgccaaggtcttctttacccctaaatgaccagaatttctttcatcgtgatattgttccagtactgttcgatgctcactatatggaacaaccgcctgcagtactgagttatttccctgatatttcttcctccgaaacaacatatcctgattgaaaactaaagagtcccactgagaacagatagccttgacaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggcttttttacagggtaatctactcaatgcatcagCTCGAACCATCG-G---GCCAT--CTG-CC-CTTCTGGA--CTTTT--AAAGT--TGAG--AAGCCATCTTAGGGCTCCGTGGTCTGTTCTGACC-ACTATAT-GTCGTCCATATA---GG-TAATGATGAAAGTATTTCAATGAGTTGACTATA------GCCAGAAGCTCCCGTCTAGTGACGCAATA---GCTCCTTTCGGGCTTTGTAAAGGTTCTACTGTAGTATGA-AATAAC-TTTT--T--CAGATCCATCT--T-GGATCTGGGATAAGACA--GCGC----CC-A--AACC-C-ACTAAACTGGCATCAGTATCCAAGATGAATGTGCCATCCT---------CAATCGGATATG-AC-AAAATTGGGGCTGTAATAAGAGCAT-TTTTCAACG-CTTCAAATGACTGTTGACATTCTTCAGTCCATcagcatcactcatccagtat
gi|16 : ctctttattctccaccctgatgcaattgtaacatttcccctgaacaaggtctgcgactaagtgcgtctgcattattgtgacacttgccagcccggtgttgaatttcaaagtcgtatgcagctaaaacCCTCCGCGATTTTTT---AAGTT-TG--TCA-ACCATT-TAACGAGCAATGGTCCGTTTGTAC--TGTGAATTTATTCTCATAAA---GA-TCGTGTTTAAAATGCT-----TTGTGAAGTAAACCAACTACAAGAA---CTCTTCTAGTAACGCATTACTtggaatttagttgacttctccgtcagtctatgtaagggcttagccttgtctgaataatgtaagatgaattttctgtagtaggatgttaatcctaagaagctcctgacttctttcgtagatcttgtgtgtcggccattctttgacagcctttattttgttgggatcagttgaaacacctgtctcactgactacatgtcccaaaaagagtacctctctctgacaaagttgaaattatgtcagactaagttttaggttagcctgaagtaatctatcaaaaaccatcttcaggttctgtatttgttctccaaacgtcttggaatgaacaataatgtcgtctaagtagactaaacagacgtcataagataatccatggagaactctctccatgagtcgctcaaatgtagctggggcattacaaagcccaaaagccatgacggtaaattgccaaagaccacc
gi|20 : tggGAGCTGTGGTCTGTTCGAAC--CAAAAACTGCTTGCCATACA---GA-TAATGCTTGTAATATT-----TGGTAAAGTAGA-CAACTGCTAAGAGTTCCTTTtttttgacattttttagcgatctg
gi|5 : tcagtAGCTATGATCTGTTTGAAC--CACAAACTGCTTGCCATACAGAGAGATAATGCTTGTAATATT-----TGGTAAAGTCGA-CAACTGCTAGTAGTTCCTTTCTTGTCTTGCAGTATTTTCTC---TCAGCTTTTGATAATAATCTGCTAGCATAAGC-AATGAC---------------ACGTTC--A-AC------GGT--GACA--GCACTACACTGATCG-CAGC-ATC--ATTCGCGTCTGTATCCAGTATGAA----------TGATTGCGAAAAATATGG-ATGCGCAAGAACTGGc
gi|11 : tcttctctacccctaaatgaccggaagttctctcatcgtgatattgctccagtactgttcgtcgcctgcagtatagagttatttccttgagatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaacagggtaacctactcaacgcttcagcatttgcgtggtttttacctgatcgatgttcaatggtcatttcaaaattgcttgaagtctcgagccaacgtgaaagtagtccttcaggaattttgcagttcattaactatttcagtaG-TAATATTTA--------------GTAAAGTAGG-CAATAGCTAATAGTTGTTTTCTTGTTATGAAGTA---------------TTTTATT----CTCAACTAGCATAAAC-AATAAC-A-CGTTTAACA---CCATTTTGATACTG-TGAAATAA-------------------CGGCA-CCGTC--ACTCGTGTTTGTATCCAGGATAAAT----------GACTGCGA-AAATCTGG-ATGCGCAAAAACTGGcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|19 : atgagactgcaatgtccaaagatttccatagggtaatctattcggtacatcatcattgcatggtttttacttggttgaagttcaatggtcatttgaaaattgcttaaagtatcacaccaaagtgcaagttgttcttagggatatttgcagtttattaaccatatttcagtaagctatgatcatgacacttCACTGGAGCTTT-GCAA-AGCCTCTCTTTGAGATCCTGGAATGCCTGCTGACATTCCTCACTCCATAGCtgtagttattagtgtataatgcaatgaactgaatgctcattggcaatctcctgtccacgtaaaatttctacccttttctgttaa
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TAAATGTCTTGCTATAATAGCAAATGAATTTTTCCAGCCCGCCTTGTACTTGCGAAAGTACGGCTCCCAAGCCAAGATTGGATTTATGGCGATCGAGTATAAATAGTCCTTATTCATCAGAATAAGTTTATTCATCAGAATAAGACAAAATAGGAGCGCTAGTTAAGGCTCTTATCAGCAACGTCACAATTTTCGTCCCACACAAACTTGACTGAAGATTAATTAAGTCGGTTTTGCAAAGGTCTAGCAATATCTGAAAATTTTGTATATAAATTACAAAAGCCTAAGAAACTCCTGACTTCCCTTGCGTTTTTAGGAATGGGCCATGTTTTGACCGATTCTAGTTTAGAAGGATCTGTAGCTATCCCATTTTCGCTTACAATATGTCCCAGATAGAGAACTTTTTGAAGAAGTAAGCATTTCTTGGGATTCATTTGCAAATTAGCTTCCCTAAGTCGTGTGAAGACTTGTTTTAAATTGGTTAAATGTTGACAAAATTGTAATGTCGTCTATGTAAACTC
Unaligned ( gi|10 ): TATGAGAGGCTCAAACGTCACTGGGGCATTACAAAGTCCAAATGGCATGACTTTAAAATTGTAAAGCCCTTTTCTGGCAAATGCGGTCTTCAGACGATCTTTTTCTGCTACTTCGACCTGGTACCCAACATTTCAATCTAATGTGGAAAAACTGCGCCTGATAATTGACCTAAGAGTCATCTATCCTCGGAAGAGGTATGCATCCTTACAGATGCCGTTGTTTAAGCTTCCTGTAGTTCAATGCAGAAACCTGGGTCGTTCCATCCTTTTTCTTAACCAACACAACTGGAGATGACCTGAGGCTGGACACTCTTCAATGATTCCCCTTCTCAGCATGTCGTCAACATGACGATCCGACTCTTCTGCATATGTTACGGGAGTCGTCTTGAGTGCGTTTATTGATTAGTGCGTACCAGTATATTATGGCGTGTTCTGTCATTTTAGTTTGACCAAGGT
Unaligned ( gi|15 ): CTTTTCAAAATCAGTCCTACGCCTCTGCAATAGCTAGTAAATTTTGGCGACTGTCCCGTTTTGGTTCGTGGAAAATAGACATACACCTCATAATTTACATTAAAGTTCCCTCAATTCAATTTTTGTCATGGTAATGCTTTTGTCTTACCACTGCATTTTGACGAACAATTTTGTGAGCTTGCTCAAGTCTATCTTGCAATTGTCACACCCATT
Unaligned ( gi|17 ): TAGGTAATGGTGAAAGTTTTTAATGGATTTTACAATAGCCAAAAGTTCACGACGGGTGACACAATAACGCCTTTCAGAAGCACTAAAGGTTTTACTATAGT
Unaligned ( gi|18 ): GAGTGCAGTCTGTATTCTCACGAAAACAAGGCCTGCGAGACAGTGCGTCCGCATTACTGTGCGAACGCCCCGCTCTATGTTCAACTATAAAATCATATG
Unaligned ( gi|21 ): TCTTAAATGTTTGCCAGTTTACTTATGCATCATGGTAACGTTTCCGCCTGCGCATTTCTTGGGCTGAATGATGCCTTACTGTACTGTG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 1 11 22222 22222 2 11 11 11 1111 111111 111 111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 66666666666666666 2222 444444444 111111 1111 222 11 11 22 2 2 1 55555 22 222 11 22 333 33333 1 1 11 444444 11 111 33333 66666666666 33333333 1111 444444444444444444444444 4444444444444444 1 1111 1111 1111 1111 11 11 3333333333 111 1 2222222222222222222222 444444444444444444 1 2
lowQualScore : 1 0 1 0 1 1 1 1 0 0 1 1 1 6 1 00 0 11 4 0 1 1 0 1 99 1 1 0 88888 55555 6 3 1 4 1 33 22 8 8 99 3 1 1 11 0 8 0 0 33 99 1 4 1 6 4444 3 6 3 7 999999 3 111 6 1 111 2 444 0 1 5 5555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 0 8 00000000000000000 9999999 6666 2 0 0 2 00 5 9999 1 000000000 2 1 66 77 5 3 888888 1 9999 6 1 555 1 33 3 33 2 4 77 2 4 0 0 5 00000 77 111 88 77 4 4 555 2 4 2 33333 6 3 3 88 444444 88 6 6 99 99 222 22222 6 1 0 33333333333 11111111 6 8888 1 777777777777777777777777 2 6666666666666666 6 1 0 1 0 1 0000 0 2222 2222 0 1 1 66 5 2 1 1 1 1111 1 5 0 5 2 11 3 8 11 1111111111 444 0 77777 1 3 5555555555555555555555 1 0 888888888888888888 3 0 6 3 6 1 99 3 1 6 0 999 6 1 0 1
lowQualScore : . . . . . . . . . . . . . . . .. . .. . . . . . . .. . . . ..... ..... . . . . . .. .. . . .. . . . .. . . . . .. .. . . . . .... . . . . ...... . ... . . ... . ... . . . .................................................................................. . . . ................. ....... .... . . . . .. . .... . ......... . . .. .. . . ...... . .... . . ... . .. . .. . . .. . . . . . ..... .. ... .. .. . . ... . . . ..... . . . .. ...... .. . . .. .. ... ..... . . . ........... ........ . .... . ........................ . ................ . . . . . . .... . .... .... . . . .. . . . . . .... . . . . . .. . . .. .......... ... . ..... . . ...................... . . .................. . . . . . . .. . . . . ... . . . .
lowQualScore : 0 7 0 7 0 0 0 0 7 7 0 0 0 7 0 77 7 77 0 7 0 0 7 0 33 0 0 7 77777 00000 5 5 0 0 0 88 88 0 0 00 8 0 4 00 8 0 8 8 22 00 4 2 0 7 2222 2 7 7 5 222222 3 777 7 0 777 2 222 8 0 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 7 7 99999999999999999 9999999 8888 5 2 8 2 44 9 8888 0 888888888 6 2 99 44 0 0 666666 8 0000 4 0 222 0 88 2 22 0 0 55 5 0 0 0 5 00000 55 000 55 55 0 0 000 5 0 5 33333 7 3 3 33 333333 33 7 7 22 22 777 22222 7 0 7 88888888888 22222222 7 0000 3 777777777777777777777777 8 2222222222222222 7 0 8 0 6 1 3333 4 1111 1111 2 0 4 99 0 6 0 0 0 7777 3 3 6 8 2 00 2 0 00 6666666666 000 8 88888 0 6 8888888888888888888888 4 2 000000000000000000 2 0 5 5 5 0 88 3 0 7 7 333 7 0 7 0
consensus : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-CGAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATGCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCTN-TCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACC---GGNTNNAACTATCTGCATTGGNGCTCGTTTT-GTTNC---GTTGA--AAG--TTT-TTTCCTGNTGCATTTGTCA---CANCCAG-CTACA-ATG-A--G-----CATC-CGACTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGNTCTCTCGTCGTG---GTATT-G-T-C-T-AGNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNA---GTNTTG---TACCTTTNCTGN-ACTNC--CCATCGGCGATATAACATGTCCTTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAAGGTTTCC--GACTAGAGTGC-ATC--AG--CATTT--GCGTGGTT--GCTTGC-CTGGTCGATGTTC-GA-TCTG---GTCATTTCGNGAAT-TGC-TT---AAAGTCTCGAACCA---CG-G-AAGCCGT--CTG-CC-CCTCCGGGATTTTTT-GNAANTCTGAGNCA-ACCATCTTAGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGA-CAACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATG--AC---NT-TC-TCA---CCATTTTGATTCTGTGATAAGACA--GCGCC--GATCGGCAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
Reference ( family-4235 ) : GCNAGTGTCTTNTTGAANCNCTCNACCATNCCGTCTGACTTAGGATGGTGCGGCGTNGTNCGGGTCTTCTTNATACCGAAANGTACTTGCACACNCCANCGAACAANCGACTCTCANACTGGGTNCCTCTGGTCNGNATGGATCTGCTATA-----CGGCACGCCAAATCGAGTAAGGACCTGTTCNACAATTAT-TNTGCTACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGNGAAGTAGTCTGATACA--ACTAAG-ATGTATCTGTTGCCTCTN-TCCGTCGCGGGTAATTCNC-C----AAGTATAT-CCGTNGCTA------TTCGTT---C-CATCGGAGCACC---AGTTTNNACTATCTGCATTGGNGCTCGTTTT-GTTNC---GTTGA--GGG------TTTCCTGNTGCATTTATCA---CANCCAG-CTACG-ATG----------CATC-T-ACTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---GTCTTCGNCACAGTCTTNCGCACCCCTAGATGACCAGACGATCTCTCGTCGTG---NTNTT-G-T-C-T-AGAACTGTTCGTCGCTC--ACTNTATGGAACAACCGCCTGCA---GTTTTG---TACCTTTNCTGNGACTNC--CCATCGNCGGTATAACATGTCCTTGTCTACTTTCAAATGCTCGAACTGAGACCACAAAGAC--AAGGACTCGTCCTTCACTACTGATACCTGAGTAACTAGGCTTCCA-GCC-ATCCATTACCCATGA-----TTTTACTAAATTT--ATTCACAGTGCCATCATTTTTTTTTGAAGGCTCTCCATGGACA--TTGATCCTAGCTCTTTAGCCTTAA---TGTGGGAAACAAACTGGGCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TG--CAAGGTTTCC--GACTAGAGTGC-ATC--AG--CATTT--GTGTGGTT-AGCTTGC-CTGGNCGGTGTTCTGNCTCTN---GTCATTTCGNGAAT-TGC-TC---AAAGTCTCGAACCA---CG-G-AAGCCGT--CTG-CC-CCTCCGGGATTTTTT-GNAAGTCTGAGCCA-ACCANCGTAANGAGCTGTGGTCTGTTCGAACCGTA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGA-CAACTGCTAGNAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAATGTTCTGC--TAGCATAAGC-AATG--AC---NT-TC-TCA---CCATTTNGNTTCTGNGATAAGACA--GCGCC--NATCGGCA-CGTCACTCGCGTCTGTATCCAGGATGAA---TTGACTGCG-A----AAATCTGG-ATGCGCAAAAACTGGGGCTNTAGCAAGAGCNTCTCTTCGACGTCCTCGAATGNCTGCTGACATTCCTCANTCCATAGC
gi|1 : GCTAGTGTTTTATTAAAGCGCTCTACCATACAGTCTGACTTAGGATGATACGACGTTGTGTGGGTCTTCTTGGTACCGAAAAG--CTTGCATACTTCACTAAACAAACGACTCTCAAACTGAGTGCCT-TGGTCAGAGTGAAT-TGC-ATA-----CGGCACTCCTAATCGAGTAAGGACCTGTTGAACAATTATCTTTGCCACTGT--CTCGGCTTCCATGTTTTC-TA-TGGGAAA--GCTTTCTGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAA-ATGTATCTATTGCCCTTA-TCCGTCATGGGCAGCTCTC-C----AAGTATAT-CGGTTGCTA------TGCGTT---C-CATCGGAGCACC---GGTTTGTACTATCTGCATTGGGGCTTCCTTT-GCTAC---GTTGA--AAACCTTT-TTTCCTGCTGCATTTGTCA---CACCCAA-CTATATATGCACGGA----CATC-CGACTAAAGTCCTGGCCAGTAATAA------CCTTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGACGATCTGTTGCCGTG---GTACTGG-G-C-T-AAAACTGTATGCCGTTC--ACTTGATGGTACCACAGCCTGAA---GCGTTG---TACCTTTGCTGT--CTAC--CCATTGGCGATATAATATGCCCTTGTCTACTTTCAAAAGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATAGCAAAGTAACTAGGCTTTCGTGCCAATCCATTACCCA-GAAGATTTTTTACTAAACTTTAATTT---GTGCCATCA--TTTTCTTGAAGGCTCTCCATGGACGATTTGATCCAAGCTCCCTTACCTTAACGTTGTCGGAAACATACTGGCCGAACACTCTATTACTCCCGAGTCCCTAGTTG-AATCC--ACATTGCTG-TGA-CAAGGTTTCCCGGACCTGAGTGCAATCGAAGCACATTTTAGTGTTGTTAAGCTTGCACTGGCCGATGTTC-AACTCTT---GCCA-TTCGT--ATATGCTTC---CGTGTCTCCAGCCA---CG-G-AAGCCATGATTGACCACCTCCGGGGTCTTTTGGAAAATCTGAGGCATACCAGCGTAAAGAACTGTGGTCAGTGCGGACAGTA-AATTGTTTG----CCATACAAG----TAATGTTTAAAATACCGGGTAA--AATACA-CAACTGCAAGAAGTTCTTTTTTGGTTACGCAGTACTGGCGCTCTGCTTTTGTCAAAGTTCGGC--TGGCATATGCTACTG--GC---CTCTCTTCG---CCATTTAACTTCTGAGATAAGACA--GCTCC--TATCGACA-CGTTGCTGGCGTCTGTGTCCAGAATAAATTCTTGATTG--------AAATCTGGCATG-GCTAGCACTGGGGCTTTA-CAA-AGCCTCTCTTTGAGGTCCTGGAAAGCCTGTTGGCATTCCCCACTCCATAGC
gi|11 : GTAC-ATC--AT--CATT---GCATGGTT---TTTAC-TTGGTTGAAGTTCAA----TG---GTCATTT-GAAAAT-TGC-TT---AAAGTATCACACCA---
gi|11 : atgagactgcaatgtccaaagatttccatagggtaatctattcgCTTGTAATATTTAGTAA--AGTAGG-CAATAGCTAATAGTTGTTTTCTTGTTATGAAGTA------------TTTTATT----CTCAAC--TAGCATAAAC-AATA--ACACGTT-TA-ACA---CCATTTTGATACTGTGA-AA-------------TAACGGCACCGTCACTCGTGTTTGTATCCAGGATAAA----TGACTGCG-A----AAATCTGG-ATGCGCAAAAACTGG---TGTAGaagtgcaagttgttcttagggatatttgcagtttattaaccatatttcagtaagctatgatcatgacacttgtaatatttagtaaagtaggcaatagctaatagttgttttcttgttatgaagtattttattctcaactagcataaacaataacacgtttaacaccattttgatactgtgaaataacggcaccgtcactcgtgtttgtatccaggataaatgactgcgaaaatctggatgcgcaaaaactggtgtagttattagtgtataatgcaatgaactgaatgctcattggcaatctcctgtccacgtaaaatttctacccttttctgttaa
gi|12 : atgagactgcaatgtccaaagatttccatagggtaatctattcggtacatcatcattgcatggtttttacttggttgaagttcaatggtcatttgaaaattgcttaaagtatcacaccaaagtgcaagttgttcttagggatatttgcagtttattaaccatatttcagtaagctatgatcatgacaTGCTCCATTATTGTGCGTGCTACTGT--TTCA-CCTCCATATCTTG-CAGTGGGAAC--GCTT-CTGTCCATTTTGTGAAATAATCGGACACT--AC-AAGTATGTGGCGATTATCTCTG-TCCGTCTCAGATAATTCACAT----AAA-ATGT-CGGTCGCTA------TTCTCT---C-CATAGGGGTACC---AGATTttattagtgtataatgcaatgaactgaatgctcattggcaatctcctgtccacgtaaaatttctacccttttctgttaa
gi|13 : aattattTATAGTCAAGGTCAATAA-AATGCA-TTCTTCA----TCTTCTGTTCA--CTTT---ACCCCTAGATGACCAGACGTTCTCTCGTCATG---CTTTT-------T-AGAACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCT------GTTTTcttgcgcatagtacactattcacatagggaaatgtactgatgaatatccttttgaagatcaggccaatattacttttgcctgatgttgcctattgttttagtcacacccaagtgtcctg
gi|14 : GTAGTTCTC-C----TCGTATAT-CTGTAGCAA------TAAGTT---C-CATACGCGTACCAGAAGTTACAACT---TGCATCGGCGCCCGTTTG-GTTGT---ATTGG--GTGATTTTCTTTTCTGAT--ATTTTTCA---CAGC----CTACA-ATG----------TA---C-ATTATAGTCAAGGTCAATAA-AATGCA-TTCTTCA----TCTTCTGTTCA--CTTT---ACCCCTAGATGACCAGACGTTCTCTCGTCATG---CTTTT-------T-AGAACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGcttcttccgaatcatatcctgattttaaaaaaaataaagtgtctcatcgtgaacagatgaccttgataaaattatttccacatggtataagttataaccgtataaagttctgcgaggatgtgggtttcacgtcatcagcaatcccctttatgatgagactgcaatgtcc
gi|16 : tatgtacacca-CCTCCGCGATTTTTT---AAGTTTG--TCA-ACCATT-TAACGAGCAATGGTCCGTTTGTACTGTG-AATTTATTC----TCATAAAGA----TCGTGTTTAAAATGCTTTGTGA--AGTAAACCAACTACAAGAA---CTCTTCTAGTAACGCATTACTT--TTTTGACATTTTTTAGCGATCTG
gi|19 : tggACTGGAGCTTT-GCAA-AGCCTCTCTTTGAGATCCTGGAATGCCTGCTGACATTCCTCACTCCATAGC
gi|2 : cGCGAGTGTCTTTTTGAATCTTTCAACCATACCATCTGACTTAGGATGGTATGGTGTGGTCCGAGTTTTCTTTATAT--AAATGTACTTGCACATACCAGCGAACAACTGACTCTCATATTGGGTCCC-CTGGTCTGCATGGATCTATTATAGTCATTGGGACACCAAAGCGTGTGATGACTTGTTTCACACTAATGCGTGCTACAGT--TGTTGCCTCCATGTTTTG-CA-CTGGAAA--GCACCCTGTCCATTTAGAAAAGTAATCTACGACA--ACTAAG-ATATATTTGTTGCCTCTT-TCTGTTGCGGGTAATTCGC-CTGGGATGTTTATGCCATCGGTAGTCATCTTCATTGTGC-CATCGGAACACC---CGATATAGTCATCTTCATTGTAGCTC-CCTT-GTTTCTCAGTGGACTAAG------TT--CGGTTGCAATTATCA---CAACCA----------------------ATC-T---TGAAGCCCAGGCCAGTAGTA---C--CTCT------GTCT-------AATTTTGCGCACGCCAAGGTGTCC---TGAGCACTTGTCGTG---G-CTC-A-T-CATAAGTGTTGTTCGTCTTTCCAACTT--TGGGAGTATGGCCTGCATTTTTTTTT---TACCTTTTCTGGGACTTC--CCATCTTCGGTATAACATactgcactgcctttctccgttaacttggtc
gi|20 : tctggcgcagtatttcaaacggccccgatcaatagctagtcagcttcgacaagttgccaaattttctcgttgagaaaaacacatacactttatctcctttacctatcttttgccaatttagcttggcttcatggtaacgcttctgtctgcatttcgccatgaatatgaacagcattgtgtgcatcttgaagtctctacttcaatccccaggcccatcgtttttgaggaacttggtcgaggtcgcttggcatttggagtagccacctcttgaccaagagttaatgcattacgagtcttgtgttcagcagagagctacgtcatcatcaggcacgttaaatgcatagtcccgatgatgatcatcaacgtatgcacgcagcatgccgAGTGAGCTGTGGTCTGTTCGAACCAAA-AACTGCTTG----CCATACAGA----TAATGCTTGTAATATTTGGTAA--AGTAGA-CAACTGCTAAGAGTTCCTTTC
gi|3 : tcT-----TCTCCA--CCCTGA-TGCAATTGTAACATTTCCCCTGAACAAGGTCTGC--GACTA-AGTGC-GTC--TG--CATTA--TTGTGAC---ACTTGC-CAGCCCGGTGTT--GAATTTCAAAGTCGT---ATGCA---GC-T----AAAACCTCGAACCAT--CG-G---GCCAT--CTG-CC-CTTCTGG-ACTTTT---AAAGT-TGAGA-A-GCCATCTTAGGGCTCCGTGGTCTGTTCTGACC-----ACTATATGTCGTCCATATAGG----TAATGATGAAAGTATTT--CAATGAGTTGA-CTATAGCCAGAAGCTCCCGTCTAGTGACGCAATAGCTCCTTTCGGGCTTTGTAAAGGTTCTACTGTAGTATGA---AATA--AC---TT-TT-TCAGATCCATCTTGGATCTGGGATAAGACA--GCGCCCAAACC--CA-CTAAACTGGCATCAGTATCCAAGATGAA----TG--TGCC-ATCCTCAATC-GG-ATATGACAAAATTGGGGCTGTAATAAGAGCAT-TTTTCAACG-CTTCAAATGACTGTTGACATTCTTCAGTCCAT
gi|4 : ctctttaTA-----CGGCACTCCCAATCGAGTAAGACCCT-TTCTACAATTAT-TTTGCCACTGCCCTTCGGCTTCCATGTTTTTTCA-TGGGAAAAAGTTTT-TGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAA-A-GTATCTATTGCCCTTAATCCATCATGGGCAGCTCTT-C----AAGTACAT-CTGTGGCTA------TGCGTT---C-CATCGGAGCACC---AGTCTGCACTATCTGCATTGGGGCTCGTTTC---------------------------TCCTGTTGCATTTGTCA---CACCCAG-CTAT-----------------TC-TGACTGAAGTCATGGCCAGTAATAAT-C-----TTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGATGATCTGTTGTCGTG---GTACT-G-GGC-T-AAAATTGTACGCCGTTC--TCTTGATGGTACCACAGCCTGAA---GCTTTG---TATCTTTGCTGT--TTAT--CCATTGGCGATATAATATGTCCTTGTCTACTTTCAAATGCTCGAACTGAGACCACAAAGAC--AAGGACTCGTCCTTCACTACTGATACCTGAGTAACTAGGCTTCCA-GCC-ATCCATTACCCATGA-----TTTTACTAAATTT--ATTCACAGTGCCATCATTTTTTTTTGAAGGCTCTCCATGGACA--TTGATCCTAGCTCTTTAGCCTTAA---TGTGGGAAACAAACTGGGCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TG--CAAGGTTTCC--GACTAGAGTGC-ATC--AG--CATTT--GTGTGG-T-AGCTTGC-CTGGACGATGTTCTATCTCT-----TCATTTCGTG-----GC-TCNNNNNNNNNNNNNNNNN---NN-N-NNNNNNN--NNN-NN-NNNNNNNNNNNNNNN-NNNNNNNNNNNCCA-ACCAGCGTAAAGAACTGTGTTCAGTGCGGACGGTA-AATTGTTTG----CCATACAAG----TAGTGCTTAAAATACCTGGTAA--AATACA-CTACTGCAAGAGGTTCTTTTCTGATCACACAGTACTGGCGCTCTGCTTTCGTCAAtggaatttagttgacttctccgtcagtctatgtaagggcttagccttgtctgaataatgtaagatgaattttctgtagtaggatgttaatcctaagaagctcctgacttctttcgtagatcttgtgtgtcggccattctttgacagcctttattttgttgggatcagttgaaacacctgtctcactgactacatgtcccaaaaagagtacctctctctgacaaagttgaaattatgtcagactaagttttaggttagcctgaagtaatctatcaaaaaccatcttcaggttctgtatttgttctccaaacgtcttggaatgaacaataatgtcgtctaagtagactaaacagacgtcataagataatccatggagaactctctccatgagtcgctcaaatgtagctggggcattacaaagcccaaaagccatgacggtaaattgccaaagaccacc
gi|5 : TCTTCTCTACCCCTAAATGACCGGAAGTTCTCTCATCGTG---ATATT-GCT-C-C-AGTACTGTTCGTCGCCT--GCAGTATAGA
gi|5 : GC-TTC--AG--CATTT--GCGTGGTT---TTTAC-CTGATCGATGTTCAA----TG---GTCATTTCAA-AAT-TGC-TT---GAAGTCTCGAGCCAACGTG-A-AAGTAGT--C------CTTCAGGAATTTT---GCAGTTC---ATTA-ACTATTTCAGTAAGCTATGATCTGTTTGAACCACA-AACTGCTTG----CCATACAGAGAGATAATGCTTGTAATATTTGGTAA--AGTCGA-CAACTGCTAGTAGTTCCTTTCTTGTCTTGCAGTATTTTCTCTCAGCTTTTGATAATAATCTGC--TAGCATAAGC-AATG--AC---AC-GT-TCA---ACG----------GTGACAGCACT--ACACT--GATC-GCAGCATCATTCGCGTCTGTATCCAGTATGAA----TGATTGCGAA----AAATATGG-ATGCGCAAGAACTGGgttatttccttgagatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaacagggtaacctactcaacgcttcagcatttgcgtggtttttacctgatcgatgttcaatggtcatttcaaaattgcttgaagtctcgagccaacgtgaaagtagtccttcaggaattttgcagttcattaactatttcagtaagctatgatctgtttgaaccacaaactgcttgccatacagagagataatgcttgtaatatttggtaaagtcgacaactgctagtagttcctttcttgtcttgcagtattttctctcagcttttgataataatctgctagcataagcaatgacacgttcaacggtgacagcactacactgatcgcagcatcattcgcgtctgtatccagtatgaatgattgcgaaaaatatggatgcgcaagaactggcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|6 : tcttctctacccctaaatgaccggaagttctctcatcgtgatattgctccagtactgttcgtcgcctgcagtatagagttatttccttgagatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaacagggtaacctactcaacTGTAGTCCAGGCTAATAAAATT-TG-CTCTTTA----TCTTCGCCAAGGTCTTCTTTACCCCTAAATGACCAGAATTTCTTTCATCGTG---ATATT-G-TTC-C-AGTACTGTTCGATGCTC--ACTATATGGAACAACCGCCTGCA---GTACTGAGTTA-TTTCCCTGATATTTCTTCC-TC--CGAAACAACATATCCTcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|6 : tttAATGC-ATC--AG--CATTT--GTGTGGTT---TTTAC-CTGGTCGGTGTTC-GA---TG---GTCATTTCAA-AAT-TGC-TT---AAAGTCTCAAACCAA--CGTGCAAGTTGT--C-------CTTCGGGATTTTT--GCAGTTC---ATTA-ACCATTTCAGTGAGCTGTGGCCTGTTCGAACCAAATAACTGCTTG----CCATACAGA----TAATGGTTGTAATATTTGGTAA--AGTAGG-CAACTGCTAAGAGTTCCTTCCTTGTTACGCAATATTTTCTCTCAGCATTTGATAATGTTCTGC--TAGCATAAGC-AATGACAC---GT-TCAACA---CCATTTTGATTCTGTGA-AAG-CATTGCACC--GATC-GCAGCATCACTCgattgaaaactaaagagtcccactgagaacagatagccttgacaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggcttttttacagggtaatctactcaatgcatcagcatttgtgtggtttttacctggtcggtgttcgatggtcatttcaaaattgcttaaagtctcaaaccaacgtgcaagttgtccttcgggatttttgcagttcattaaccatttcagtgagctgtggcctgttcgaaccaaataactgcttgccatacagataatggttgtaatatttggtaaagtaggcaactgctaagagttccttccttgttacgcaatattttctctcagcatttgataatgttctgctagcataagcaatgacacgttcaacaccattttgattctgtgaaagcattgcaccgatcgcagcatcactcatccagtat
gi|7 : ttttgtagtccaggctaataaaatttgctctttatcttcgccaaggtcttctttacccctaaatgaccagaatttctttcatcgtgatattgttccagtactgttcgatgctcactatatggaacaaccgcctgcagtactgagttatttccctgatatttcttcctccgaaacaacatatcctgattgaaaactaaagagtcccactgagaacagatagccttgacaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggcttttttacagggtaatctactcGCTAGTGTTTTATTAAAGCGCTCTACCATTCCGTCTGACTTAGGATGATGCAGCTTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-CAAACAAGCGACTCTCAAACTGAGTGCCTTTGGTTAGAATGAAT-TGC-ATA-----CGACACGCTAAATCGAGTAAGGATCTGTTCAACAAGTAT-atccagtat
gi|9 : tgttttggtcttcgtaaccttagacgatcaacatgaattaattacttggtatttaccacaaggcccacagtcaacttcatatagaggatctgttttcttattgattacagtctaaggacttctccaataactagtaaactttgggaaatggcctgctttccgctgcgaaaagaatacgtttgttaaatgcttgccattttaccttagcatcatggtaacgtttctgtctgcgcatttattggcctgtatgatgccttactgtactgtgcacttcttctaaacggacttttagctcccatatccacttcaatgctgaggtatatcactcacacttggtggcatttcatacataacgtctagaggtgtagcaacctctctaccaagcatgaatgagttcggggtgcaacctgtcgtctagtgctgtgctgaccagtaggccaccataacgtacggcaggtgaacatcccagtgtctttgatgttcatcaacgtaggtgctgagcattgttTTTG-GA-TAGGCAAT-GGTTTCCGTCCACTTGGTAAAATAGTCTGATA-ATTACTAAG-ATGTATCTGT------TT-TCTGTTGTAGGTAA-TCAC-C----AAGGATGT-CCAT-GCTA------CTCGTT---CACATTGGAAAACC---GGCTCCAACTATTTGTATTGGTGCGCGTTTTAGTTTT---GTTGA------------TACTTGGCGCCTTGAGCAAACCATACAGCCTGCA-ATGTATTGGCGTACATCTT-TCTGCAGCCCAGGCCAGTAGTAA---GACTGTCTT---ATTTTGCTCAGGGTTTTTCTGATGCCTAAATGACCTG-CGGTTTCTGATCATGAGTATACT-G-----G-AGGAC-ATTCTACGCTG--ATTCATTGGAATCACTGCTT-TG---GTCTT----TATTTTTct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TAAATGTCTTGCTATAATAGCAAATGAATTTTTCCAGCCCGCCTTGTACTTGCGAAAGTACGGCTCCCAAGCCAAGATTGGATTTATGGCGATCGAGTATAAATAGTCCTTATTCATCAGAATAAGTTTATTCATCAGAATAAGACAAAATAGGAGCGCTAGTTAAGGCTCTTATCAGCAACGTCACAATTTTCGTCCCACACAAACTTGACTGAAGATTAATTAAGTCGGTTTTGCAAAGGTCTAGCAATATCTGAAAATTTTGTATATAAATTACAAAAGCCTAAGAAACTCCTGACTTCCCTTGCGTTTTTAGGAATGGGCCATGTTTTGACCGATTCTAGTTTAGAAGGATCTGTAGCTATCCCATTTTCGCTTACAATATGTCCCAGATAGAGAACTTTTTGAAGAAGTAAGCATTTCTTGGGATTCATTTGCAAATTAGCTTCCCTAAGTCGTGTGAAGACTTGTTTTAAATTGGTTAAATGTTGACAAAATTGTAATGTCGTCTATGTAAACTC
Unaligned ( gi|10 ): TATGAGAGGCTCAAACGTCACTGGGGCATTACAAAGTCCAAATGGCATGACTTTAAAATTGTAAAGCCCTTTTCTGGCAAATGCGGTCTTCAGACGATCTTTTTCTGCTACTTCGACCTGGTACCCAACATTTCAATCTAATGTGGAAAAACTGCGCCTGATAATTGACCTAAGAGTCATCTATCCTCGGAAGAGGTATGCATCCTTACAGATGCCGTTGTTTAAGCTTCCTGTAGTTCAATGCAGAAACCTGGGTCGTTCCATCCTTTTTCTTAACCAACACAACTGGAGATGACCTGAGGCTGGACACTCTTCAATGATTCCCCTTCTCAGCATGTCGTCAACATGACGATCCGACTCTTCTGCATATGTTACGGGAGTCGTCTTGAGTGCGTTTATTGATTAGTGCGTACCAGTATATTATGGCGTGTTCTGTCATTTTAGTTTGACCAAGGT
Unaligned ( gi|15 ): CTTTTCAAAATCAGTCCTACGCCTCTGCAATAGCTAGTAAATTTTGGCGACTGTCCCGTTTTGGTTCGTGGAAAATAGACATACACCTCATAATTTACATTAAAGTTCCCTCAATTCAATTTTTGTCATGGTAATGCTTTTGTCTTACCACTGCATTTTGACGAACAATTTTGTGAGCTTGCTCAAGTCTATCTTGCAATTGTCACACCCATT
Unaligned ( gi|17 ): TAGGTAATGGTGAAAGTTTTTAATGGATTTTACAATAGCCAAAAGTTCACGACGGGTGACACAATAACGCCTTTCAGAAGCACTAAAGGTTTTACTATAGT
Unaligned ( gi|18 ): GAGTGCAGTCTGTATTCTCACGAAAACAAGGCCTGCGAGACAGTGCGTCCGCATTACTGTGCGAACGCCCCGCTCTATGTTCAACTATAAAATCATATG
Unaligned ( gi|21 ): TCTTAAATGTTTGCCAGTTTACTTATGCATCATGGTAACGTTTCCGCCTGCGCATTTCTTGGGCTGAATGATGCCTTACTGTACTGTG
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11 1111 1 1 1 22222 11 11 11 1111 111111 111 1111 8888888888888888888888888888 111 000000000000000000000000000000000 55555555555555555 1111 333333333 111 1111 1 222 11 11 222 1 1 1 22222 11 222 11 11 222 33333 1 1 11 33 11 11 11 111 3333 333333 22222222 666666666666666666666666 444444444444444 11111 1111 1111 1111 11 11 3333333333 111 11 222222222222222222 1 2222 33333333 1 1
lowQualScore : 6 88 7777 1 6 2 3 3 55555 1 1 1 999 33 22 8 8 99 3 1 1 11 0 8 0 3 22 99 1 1 6 4444 3 6 3 9 999999 1 111 6 1 2 2222 333 0 1 5 5555555555555555555555555555 1 1 444 1 444444444444444444444444444444444 1 0 8 66666666666666666 8888888 9999 1 0 0 4 5 55 3 777777777 1 1 66 77 1 3 1 111 1 9999 6 1 0 666 1 33 3 11 333 7 1 7 1 1 5 5 5 77777 88 111 88 88 1 1 000 1 1 1 33333 6 3 3 88 11 33 1 33 00 1 6 99 99 222 0 0000 6 0 4 6 333333 88888888 0 6 1 888888888888888888888888 1 1 1 111111111111111 5 5 66 1 5 3 88888 0000 0000 3 33 1 66 5 1 1 1 1 1111 1 5 0 3 1 11 3 8 11 1111111111 444 0 1 555 1 11 3 999999999999999999 5 1 0 1111 44 33333333 3 0 6 1 6 1 99 3 6 0 7
lowQualScore : . .. .... . . . . . ..... . . . ... .. .. . . .. . . . .. . . . . .. .. . . . .... . . . . ...... . ... . . . .... ... . . . ............................ . . ... . ................................. . . . ................. ....... .... . . . . . .. . ......... . . .. .. . . . ... . .... . . . ... . .. . .. ... . . . . . . . . ..... .. ... .. .. . . ... . . . ..... . . . .. .. .. . .. .. . . .. .. ... . .... . . . . ...... ........ . . . ........................ . . . ............... . . .. . . . ..... .... .... . .. . .. . . . . . .... . . . . . .. . . .. .......... ... . . ... . .. . .................. . . . .... .. ........ . . . . . . .. . . . .
lowQualScore : 7 33 3333 0 7 0 3 3 00000 0 0 0 222 88 88 0 0 00 8 4 4 00 8 0 8 2 88 00 4 0 7 2222 2 7 7 3 222222 0 777 7 0 2 7777 000 8 0 0 4444444444444444444444444444 0 4 000 0 000000000000000000000000000000000 0 7 7 77777777777777777 6666666 6666 0 2 8 5 9 22 6 888888888 0 2 99 44 0 4 0 777 0 0000 4 0 0 555 0 88 2 22 333 3 0 3 0 0 5 5 5 00000 55 000 55 55 0 0 555 0 0 0 33333 7 3 3 33 77 22 2 88 00 0 7 22 22 777 7 3333 7 3 8 7 333333 22222222 8 7 3 444444444444444444444444 0 0 6 333333333333333 7 3 99 0 5 1 22222 6666 6666 4 99 4 99 0 0 2 0 0 7777 3 3 6 3 0 00 2 0 00 6666666666 000 8 0 666 0 00 8 222222222222222222 0 4 2 2222 00 22222222 2 0 5 0 5 0 88 3 7 7 3
consensus : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-GAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATNCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCTN-TCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACCGGN---TNNAACTATCTGCATTGGNGCTCGTTTT-GTTNC---GTTGA--AAG---TT-TTTCCTGNTGCATTTGTCA---CANCCAG-CTACA-----ACG----GA----CATCCGACTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGTTCTCTCGTCGTG-GTATT-G-T-C-T-AGNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNA---GTNTTG---TACCTTTNCT-G-TACTNC--CCATCGGCGATATAACATGTCC---TTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAAGGTTTCC--GACTNGAGTGC-ATC--AG--CATTT--GCGTGGTT--GCTTGC-CTGGTCGATGTTCAA-TCT---GGTCATTTCGNGAAT-TGCTTAAA-GTCTCGAACCAA--CG-G-AAGTCGT--CTG-CC-CCTCCGGGATTTTTT-GCAGNTCTG-ATCA-ACCATCTT--AGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGAC-AACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATG--AC---NT-TC-TCA---CCATTTTGATTCTGTG--ATAAGACA--GCGCC--GATCGGCAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
Reference ( family-4235 ) : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-GAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATGCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCTN-TCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACCGGN---TNNAACTATCTGCATTGGNGCTCGTTTT-GTTNC---GTTGA--AAG---TTTTTTCCTGNTGCATTTGTCA---CANCCAG-CTACA-----ATG----AG----CATCCGACTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGNTCTCTCGTCGTG-GTATT-G-T-C-T-AGNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNA---GTNTTG---TACCTTTNCT-G-NACTNC--CCATCGGCGATATAACATGTCC---TTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAAGGTTTCC--GACTAGAGTGC-ATC--AG--CATTT--GCGTGGTT--GCTTGC-CTGGTCGATGTTCGA-TCT---GGTCATTTCGNGAAT-TGCTTAAA-GTCTCGAACCA---CG-G-AAGCCGT--CTG-CC-CCTCCGGGATTTTTT-GNAANTCTGAGNCA-ACCATCTT--AGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGAC-AACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATG--AC---NT-TC-TCA---CCATTTTGATTCTGTG--ATAAGACA--GCGCC--GATCGGCAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
gi|1 : GCTAGTGTTTTATTAAAGCGCTCTACCATACAGTCTGACTTAGGATGATACGACGTTGTGTGGGTCTTCTTGGTACCGAAAAG--CTTGCATACTTCA-CTAAACAAACGACTCTCAAACTGAGTGCCT-TGGTCAGAGTGAAT-TGC-ATA-----CGGCACTCCTAATCGAGTAAGGACCTGTTGAACAATTATCTTTGCCACTGT--CTCGGCTTCCATGTTTTC-TA-TGGGAAA--GCTTTCTGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAA-ATGTATCTATTGCCCTTA-TCCGTCATGGGCAGCTCTC-C----AAGTATAT-CGGTTGCTA------TGCGTT---C-CATCGGAGCACCGGT---TTGTACTATCTGCATTGGGGCTTCCTTT-GCTAC---GTTGA--AAACC-TTTTTTCCTGCTGCATTTGTCA---CACCCAA-CTATATATGCACG----GA----CATCCGACTAAAGTCCTGGCCAGTAATAA------CCTTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGACGATCTGTTGCCGTG-GTACTGG-G-C-T-AAAACTGTATGCCGTTC--ACTTGATGGTACCACAGCCTGAA---GCGTTG---TACCTTTGCT-G-T-CTAC--CCATTGGCGATATAATATGCCC---TTGTCTACTTTCAAAAGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATAGCAAAGTAACTAGGCTTTCGTGCCAATCCATTACCCA-GAAGATTTTTTACTAAACTTTAATTT---GTGCCATCA--TTTTCTTGAAGGCTCTCCATGGACGATTTGATCCAAGCTCCCTTACCTTAACGTTGTCGGAAACATACTGGCCGAACACTCTATTACTCCCGAGTCCCTAGTTG-AATCC--ACATTGCTG-TGA-CAAGGTTTCCCGGACCTGAGTGCAATCGAAGCACATTTTAGTGTTGTTAAGCTTGCACTGGCCGATGTTCAACTCT---TGCCA-TTCGT--ATATGCTTCCGTGTCTCCAGCCA---CG-G-AAGCCATGATTGACCACCTCCGGGGTCTTTTGGAAAATCTGAGGCATACCAGCGT--AAAGAACTGTGGTCAGTGCGGACAGTA-AATTGTTTG----CCATACAAG----TAATGTTTAAAATACCGGGTAA--AATACAC-AACTGCAAGAAGTTCTTTTTTGGTTACGCAGTACTGGCGCTCTGCTTTTGTCAAAGTTCGGC--TGGCATATGCTACTG--GC---CTCTCTTCG---CCATTTAACTTCTGAG--ATAAGACA--GCTCC--TATCGACA-CGTTGCTGGCGTCTGTGTCCAGAATAAATTCTTGATTG--------AAATCTGGCATG-GCTAGCACTGGGGCTTTA-CAA-AGCCTCTCTTTGAGGTCCTGGAAAGCCTGTTGGCATTCCCCACTCCATAGC
gi|11 : GTAC-ATC--AT--CATT---GCATGGTT---TTTAC-TTGGTTGAAGTTCAA-T-----GGTCATTT-GAAAAT-TGCTTAAA-GTATCACACCAAAGTG-C-AAGTTGT---------TCTTAGGGA-TATTT-GCAGTTT---ATTA-ACCATATTTCAGTAAGCTATGATC-AT---GAC---------ACTT-------------G----TAAT---------ATTTAGTAA--AGTAGGC-AATAGCTAATAGTTGTTTTCTTGTTATGAAGTA------------TTTTATT----CTCAAC--TAGCATAAAC-AATA--ACACGTT-TA-ACA---CCATTTTGATACTGTGAAATAA----------------CGGCACCGTCACTCGTGTTTGTATCCAGGATAAA----TGACTGCG-A----AAATCTGG-ATGCGCAAAAACTGG---TGTAG
gi|12 : atgagactgcaatgtccaaagatttccatagggtaatctattcgTGCTCCATTATTGTGCGTGCTACTGT--TTCA-CCTCCATATCTTG-CAGTGGGAAC--GCTT-CTGTCCATTTTGTGAAATAATCGGACACT--AC-AAGTATGTGGCGATTATCTCTG-TCCGTCTCAGATAATTCACAT----AAA-ATGT-CGGTCGCTA------TTCTCT---C-CATAGGGGTACCAGA---Tttattagtgtataatgcaatgaactgaatgctcattggcaatctcctgtccacgtaaaatttctacccttttctgttaa
gi|13 : aattattTATAGTCAAGGTCAATAA-AATGCA-TTCTTCA----TCTTCTGTTCA--CTTT---ACCCCTAGATGACCAGACGTTCTCTCGTCATG-CTTTT-------T-AGAACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGtcttgcgcatagtacactattcacatagggaaatgtactgatgaatatccttttgaagatcaggccaatattacttttgcctgatgttgcctattgttttagtcacacccaagtgtcctg
gi|14 : GTAGTTCTC-C----TCGTATAT-CTGTAGCAA------TAAGTT---C-CATACGCGTACCAGAAGTTACAACT---TGCATCGGCGCCCGTTTG-GTTGT---ATTGG--GTGATTTTCTTTTCTGAT--ATTTTTCA---CAGCC----TACA-----ATG----TA----CAT-----TATAGTCAAGGTCAATAA-AATGCA-TTCTTCA----TCTTCTGTTCA--CTTT---ACCCCTAGATGACCAGACGTTCTCTCGTCATG-CTTTT-------T-AGAACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGttttcttcttccgaatcatatcctgattttaaaaaaaataaagtgtctcatcgtgaacagatgaccttgataaaattatttccacatggtataagttataaccgtataaagttctgcgaggatgtgggtttcacgtcatcagcaatcccctttatgatgagactgcaatgtcc
gi|16 : tatgtacacca-CCTCCGCGATTTTTT---AAGTTTG--TCA-ACCAT-TT--AACGAGCAATGGTCCGTTTGTACTGTG-AATTTATTC----TCATAAAGA----TCGTGTTTAAAATGCTTTGTGA--AGTAAACCAACTACAAGAA---CTCTTCTAGTAACGCATTACTT--TTTTGACATTTTTTAGCGATCTG
gi|19 : tggACTGGAGCTTT-GCAA-AGCCTCTCTTTGAGATCCTGGAATGCCTGCTGACATTCCTCACTCCATAGC
gi|2 : cGCGAGTGTCTTTTTGAATCTTTCAACCATACCATCTGACTTAGGATGGTATGGTGTGGTCCGAGTTTTCTTTATAT--AAATGTACTTGCACATACCAGC-GAACAACTGACTCTCATATTGGGT-CCCCTGGTCTGCATGGATCTATTATAGTCATTGGGACACCAAAGCGTGTGATGACTTGTTTCACACTAATGCGTGCTACAGT--TGTTGCCTCCATGTTTTG-CA-CTGGAAA--GCACCCTGTCCATTTAGAAAAGTAATCTACGACA--ACTAAG-ATATATTTGTTGCCTCTT-TCTGTTGCGGGTAATTCGC-CTGGGATGTTTATGCCATCGGTAGTCATCTTCATTGTGC-CATCGGAACACCCGA---TATAGTCATCTTCATTGTAGCTC-CCTT-GTTTCTCAGTGGACTAAG---TT-----CGGTTGCAATTATCA---CAACCA--------------------------ATC---TTGAAGCCCAGGCCAGTAGTA---C--CTCT------GTCT-------AATTTTGCGCACGCCAAGGTGTCCTGA-G--CACTTGTCGTG-GC-TC-A-T-CATAAGTGTTGTTCGTCTTTCCAACTT--TGGGAGTATGGCCTGCATTTTTTTTT---TACCTTTTCTGG-GACTTC--CCATCTTCGGTATAACATactgcactgcctttctccgttaacttggtc
gi|20 : tctggcgcagtatttcaaacggccccgatcaatagctagtcagcttcgacaagttgccaaattttctcgttgagaaaaacacatacactttatctcctttacctatcttttgccaatttagcttggcttcatggtaacgcttctgtctgcatttcgccatgaatatgaacagcattgtgtgcatcttgaagtctctacttcaatccccaggcccatcgtttttgaggaacttggtcgaggtcgcttggcatttggagtagccacctcttgaccaagagttaatgcattacgagtcttgtgttcagcagagagctacgtcatcatcaggcacgttaaatgcatagtcccgatgatgatcatcaacgtatgcacgcagcatgccgTC--AGTGAGCTGTGGTCTGTTCGAACCAAA-AACTGCTTG----CCATACAGA----TAATGCTTGTAATATTTGGTAA--AGTAGAC-AACTGCTAAGAGTTCCTTTC
gi|3 : T-----TCTCCA--CCCTGA-TGCAATTGTAACATTTCCCCTGAACAAGGTCTGC--GACTA-AGTGC-GTC--TG--CATTA--TTGTGAC---ACTTGC-CAGCCCGGTGTTGAA-TTTCAAAGTCGT---ATGCA---GCT-AAA-ACCTCGAACCAT--CG-G---GCCAT--CTG-CC-CTTCTGG-ACTTTT---AAAGT-TGAGA-A-GCCATCTT--AGGGCTCCGTGGTCTGTTCTGACC-----ACTATATGTCGTCCATATAGG----TAATGATGAAAGTATTT--CAATGAGTTGAC-TATAGCCAGAAGCTCCCGTCTAGTGACGCAATAGCTCCTTTCGGGCTTTGTAAAGGTTCTACTGTAGTATGA---AATA--AC---TT-TT-TCAGATCCATCTTGGATCTGGG--ATAAGACA--GCGCCCAAACC--CA-CTAAACTGGCATCAGTATCCAAGATGAA----TG--TGCC-ATCCTCAATC-GG-ATATGACAAAATTGGGGCTGTAATAAGAGCAT-TTTTCAACG-CTTCAAATGACTGTTGACATTCTTCAGTCCAT
gi|4 : ctctttaTA-----CGGCACTCCCAATCGAGTAAGACCCT-TTCTACAATTATTT-TGCCACTGCCCTTCGGCTTCCATGTTTTTTCA-TGGGAAAAAGTTTT-TGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAA-A-GTATCTATTGCCCTTAATCCATCATGGGCAGCTCTT-C----AAGTACAT-CTGTGGCTA------TGCGTT---C-CATCGGAGCACCAGT---CTGCACTATCTGCATTGGGGCTCGTTTC---------------------------TCCTGTTGCATTTGTCA---CACCCAG-CTAT---------------------TCTGACTGAAGTCATGGCCAGTAATAAT-C-----TTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGATGATCTGTTGTCGTG-GTACT-G-GGC-T-AAAATTGTACGCCGTTC--TCTTGATGGTACCACAGCCTGAA---GCTTTG---TATCTTTGCT-G-T-TTAT--CCATTGGCGATATAATATGTCC---TTGTCTACTTTCAAATGCTCGAACTGAGACCACAAAGAC--AAGGACTCGTCCTTCACTACTGATACCTGAGTAACTAGGCTTCCA-GCCA-TCCATTACCCATGA-----TTTTACTAAATTT--ATTCACAGTGCCATCATTTTTTTTTGAAGGCTCTCCATGGACA--TTGATCCTAGCTCTTTAGCCTTAA---TGTGGGAAACAAACTGGGCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TG--CAAGGTTTCC--GACTAGAGTGC-ATC--AG--CATTT--GTGTGGTA--GCTTGC-CTGGACGATGTTCTA-TCT---CTTCATTTCGTG-GC-TCNNNNNN-NNNNNNNNNNN---NN-N-NNNNNNN--NNN-NN-NNNNNNNNNNNNNNN-NNNNNNNNNNNCCA-ACCAGCGT--AAAGAACTGTGTTCAGTGCGGACGGTA-AATTGTTTG----CCATACAAG----TAGTGCTTAAAATACCTGGTAA--AATACAC-TACTGCAAGAGGTTCTTTTCTGATCACACAGTACTGGCGCTCTGCTTTCGTCAAtggaatttagttgacttctccgtcagtctatgtaagggcttagccttgtctgaataatgtaagatgaattttctgtagtaggatgttaatcctaagaagctcctgacttctttcgtagatcttgtgtgtcggccattctttgacagcctttattttgttgggatcagttgaaacacctgtctcactgactacatgtcccaaaaagagtacctctctctgacaaagttgaaattatgtcagactaagttttaggttagcctgaagtaatctatcaaaaaccatcttcaggttctgtatttgttctccaaacgtcttggaatgaacaataatgtcgtctaagtagactaaacagacgtcataagataatccatggagaactctctccatgagtcgctcaaatgtagctggggcattacaaagcccaaaagccatgacggtaaattgccaaagaccacc
gi|5 : TCTTCTCTACCCCTAAATGACCGGAAGTTCTCTCATCGTG-ATATT-GCT-C-C-AGTACTGTTCGTCGCCT--GCAGTATAGAGTTATTTCCTTGA---G
gi|5 : A-CAGGGTAACC--TACTCAA-CGC-TTC--AG--CATTT--GCGTGGTT---TTTAC-CTGATCGATGTTCAA-T-----GGTCATTTCAA-AAT-TGCTTGAA-GTCTCGAGCCAACGTG-A-AAGTAGT--C------CTTCAGGAATTTT---GCAGTTC---ATTA-ACTATTTC--AGTAAGCTATGATCTGTTTGAACCACA-AACTGCTTG----CCATACAGAGAGATAATGCTTGTAATATTTGGTAA--AGTCGAC-AACTGCTAGTAGTTCCTTTCTTGTCTTGCAGTATTTTCTCTCAGCTTTTGATAATAATCTGC--TAGCATAAGC-AATG--AC---AC-GT-TCA---ACG----------GTG--ACAGCACT--ACACT--GATC-GCAGCATCATTCGCGTCTGTATCCAGTATGAA----TGATTGCGAA----AAATATGG-ATGCGCAAGAACTGGatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaacagggtaacctactcaacgcttcagcatttgcgtggtttttacctgatcgatgttcaatggtcatttcaaaattgcttgaagtctcgagccaacgtgaaagtagtccttcaggaattttgcagttcattaactatttcagtaagctatgatctgtttgaaccacaaactgcttgccatacagagagataatgcttgtaatatttggtaaagtcgacaactgctagtagttcctttcttgtcttgcagtattttctctcagcttttgataataatctgctagcataagcaatgacacgttcaacggtgacagcactacactgatcgcagcatcattcgcgtctgtatccagtatgaatgattgcgaaaaatatggatgcgcaagaactggcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|6 : tcttctctacccctaaatgaccggaagttctctcatcgtgatattgctccagtactgttcgtcgcctgcagtatagagttatttccttgagatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaTGTAGTCCAGGCTAATAAAATT-TG-CTCTTT----ATCTTCGCCAAGGTCTTCTTTACCCCTAAATGACCAGAATTTCTTTCATCGTG-ATATT-GTT-C-C-AGTACTGTTCGATGCTC--ACTATATGGAACAACCGCCTGCA---GTACTGAGTTA-TTTCCCT-GATATTTCTTCC-TC--CGAAACAACATATCCTGATTGAAAACT---AAAGAGTCCCACTGAGAACAGATAGCCTTGAcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|6 : tttAATGC-ATC--AG--CATTT--GTGTGGTT---TTTAC-CTGGTCGGTGTTCGA-T-----GGTCATTTCAA-AAT-TGCTTAAA-GTCTCAAACCAA--CGTGCAAGTTGT--C-------CTTCGGGATTTTT--GCAGTTC---ATTA-ACCATTTC--AGTGAGCTGTGGCCTGTTCGAACCAAATAACTGCTTG----CCATACAGA----TAATGGTTGTAATATTTGGTAA--AGTAGGC-AACTGCTAAGAGTTCCTTCCTTGTTACGCAATATTTTCTCTCAGCATTTGATAATGTTCTGC--TAGCATAAGC-AATGACAC---GT-TCAACA---CCATTTTGATTCTGTG--A-AAG-CATTGCACC--GATC-GCAGCATCACTCcaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggcttttttacagggtaatctactcaatgcatcagcatttgtgtggtttttacctggtcggtgttcgatggtcatttcaaaattgcttaaagtctcaaaccaacgtgcaagttgtccttcgggatttttgcagttcattaaccatttcagtgagctgtggcctgttcgaaccaaataactgcttgccatacagataatggttgtaatatttggtaaagtaggcaactgctaagagttccttccttgttacgcaatattttctctcagcatttgataatgttctgctagcataagcaatgacacgttcaacaccattttgattctgtgaaagcattgcaccgatcgcagcatcactcatccagtat
gi|7 : ttttgtagtccaggctaataaaatttgctctttatcttcgccaaggtcttctttacccctaaatgaccagaatttctttcatcgtgatattgttccagtactgttcgatgctcactatatggaacaaccgcctgcagtactgagttatttccctgatatttcttcctccgaaacaacatatcctgattgaaaactaaagagtcccactgagaacagatagccttgacaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggcttttttacagggtaatctactcGCTAGTGTTTTATTAAAGCGCTCTACCATTCCGTCTGACTTAGGATGATGCAGCTTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-AAACAAGCGACTCTCAAACTGAGTGCCTTTGGTTAGAATGAAT-TGC-ATA-----CGACACGCTAAATCGAGTAAGGATCTGTTCAACAAGTATatccagtat
gi|9 : tgttttggtcttcgtaaccttagacgatcaacatgaattaattacttggtatttaccacaaggcccacagtcaacttcatatagaggatctgttttcttattgattacagtctaaggacttctccaataactagtaaactttgggaaatggcctgctttccgctgcgaaaagaatacgtttgttaaatgcttgccattttaccttagcatcatggtaacgtttctgtctgcgcatttattggcctgtatgatgccttactgtactgtgcacttcttctaaacggacttttagctcccatatccacttcaatgctgaggtatatcactcacacttggtggcatttcatacataacgtctagaggtgtagcaacctctctaccaagcatgaatgagttcggggtgcaacctgtcgtctagtgctgtgctgaccagtaggccaccataacgtacggcaggtgaacatcccagtgtctttgatgttcatcaacgtaggtgctgagcattgttTTTG-GA-TAGGCAAT-GGTTTCCGTCCACTTGGTAAAATAGTCTGATA-ATTACTAAG-ATGTATCTGTT------T-TCTGTTGTAGGTAAT-CAC-C----AAGGATGT-CCAT-GCTA------CTCGTT---CACATTGGAAAACCGGC---TCCAACTATTTGTATTGGTGCGCGTTTTAGTTTT---GTTGA------------TACTTGGCGCCTTGAGCAAACCATACAGCCTGCA-----ATGTATTGGCGTACATCTTTCTGCAGCCCAGGCCAGTAGTAA---GACTGTCTT---ATTTTGCTCAGGGTTTTTCTGATGCCTAAATGACCTG-CGGTTTCTGATCATGAGTATA-C-T-G-G-AGGAC-ATTCTACGCTG--ATTCATTGGAATCACTGCTT-TG---GTCTT----TATTTTTct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TAAATGTCTTGCTATAATAGCAAATGAATTTTTCCAGCCCGCCTTGTACTTGCGAAAGTACGGCTCCCAAGCCAAGATTGGATTTATGGCGATCGAGTATAAATAGTCCTTATTCATCAGAATAAGTTTATTCATCAGAATAAGACAAAATAGGAGCGCTAGTTAAGGCTCTTATCAGCAACGTCACAATTTTCGTCCCACACAAACTTGACTGAAGATTAATTAAGTCGGTTTTGCAAAGGTCTAGCAATATCTGAAAATTTTGTATATAAATTACAAAAGCCTAAGAAACTCCTGACTTCCCTTGCGTTTTTAGGAATGGGCCATGTTTTGACCGATTCTAGTTTAGAAGGATCTGTAGCTATCCCATTTTCGCTTACAATATGTCCCAGATAGAGAACTTTTTGAAGAAGTAAGCATTTCTTGGGATTCATTTGCAAATTAGCTTCCCTAAGTCGTGTGAAGACTTGTTTTAAATTGGTTAAATGTTGACAAAATTGTAATGTCGTCTATGTAAACTC
Unaligned ( gi|10 ): TATGAGAGGCTCAAACGTCACTGGGGCATTACAAAGTCCAAATGGCATGACTTTAAAATTGTAAAGCCCTTTTCTGGCAAATGCGGTCTTCAGACGATCTTTTTCTGCTACTTCGACCTGGTACCCAACATTTCAATCTAATGTGGAAAAACTGCGCCTGATAATTGACCTAAGAGTCATCTATCCTCGGAAGAGGTATGCATCCTTACAGATGCCGTTGTTTAAGCTTCCTGTAGTTCAATGCAGAAACCTGGGTCGTTCCATCCTTTTTCTTAACCAACACAACTGGAGATGACCTGAGGCTGGACACTCTTCAATGATTCCCCTTCTCAGCATGTCGTCAACATGACGATCCGACTCTTCTGCATATGTTACGGGAGTCGTCTTGAGTGCGTTTATTGATTAGTGCGTACCAGTATATTATGGCGTGTTCTGTCATTTTAGTTTGACCAAGGT
Unaligned ( gi|15 ): CTTTTCAAAATCAGTCCTACGCCTCTGCAATAGCTAGTAAATTTTGGCGACTGTCCCGTTTTGGTTCGTGGAAAATAGACATACACCTCATAATTTACATTAAAGTTCCCTCAATTCAATTTTTGTCATGGTAATGCTTTTGTCTTACCACTGCATTTTGACGAACAATTTTGTGAGCTTGCTCAAGTCTATCTTGCAATTGTCACACCCATT
Unaligned ( gi|17 ): TAGGTAATGGTGAAAGTTTTTAATGGATTTTACAATAGCCAAAAGTTCACGACGGGTGACACAATAACGCCTTTCAGAAGCACTAAAGGTTTTACTATAGT
Unaligned ( gi|18 ): GAGTGCAGTCTGTATTCTCACGAAAACAAGGCCTGCGAGACAGTGCGTCCGCATTACTGTGCGAACGCCCCGCTCTATGTTCAACTATAAAATCATATG
Unaligned ( gi|21 ): TCTTAAATGTTTGCCAGTTTACTTATGCATCATGGTAACGTTTCCGCCTGCGCATTTCTTGGGCTGAATGATGCCTTACTGTACTGTG
Alignments
lowQualScore : 11 1111 1 1 1 22222 11 11 11 1111 111111 111 1111 88888888888888888888888888888888 111 999999999999999999999999999999999 55555555555555555 1111 333333333 111 1111 1 222 11 11 222 1 1 1 22222 11 222 11 11 222 33333 1 1 11 22 11 111 3333 333333 22222222 22222 555555555 1111 2222222 11111 1111 1111 1111 11 11 3333333333 111 11 222222222222222222 1 2222 33333333 1 1
lowQualScore : 6 88 7777 1 6 2 3 3 55555 1 1 1 1 8 33 22 8 8 99 3 1 1 11 0 8 0 0 22 99 1 4 1 6 4444 3 6 3 9 999999 1 111 6 1 2 2222 333 0 1 5 33333333333333333333333333333333 1 1 444 1 111111111111111111111111111111111 1 0 8 66666666666666666 8888888 9999 1 0 0 4 6 55 3 777777777 1 1 66 77 1 3 1 111 1 9999 6 1 0 222 1 33 3 11 333 7 1 7 1 1 5 5 5 77777 88 111 88 88 1 1 000 1 1 1 33333 6 3 3 88 33 88 55 11 77 6 6 99 99 222 0 0000 6 0 6 333333 88888888 0 6 1 0 99 22222 1 000000000 1 44 1111 1 8888888 5 5 66 1 5 3 88888 0000 0000 3 33 1 66 5 1 1 1 1 1111 1 5 0 3 1 11 3 8 11 1111111111 444 0 1 555 1 11 3 999999999999999999 5 1 0 1111 44 33333333 3 0 6 1 6 1 99 3 6 0 7
lowQualScore : . .. .... . . . . . ..... . . . . . .. .. . . .. . . . .. . . . . .. .. . . . . .... . . . . ...... . ... . . . .... ... . . . ................................ . . ... . ................................. . . . ................. ....... .... . . . . . .. . ......... . . .. .. . . . ... . .... . . . ... . .. . .. ... . . . . . . . . ..... .. ... .. .. . . ... . . . ..... . . . .. .. .. .. .. .. . . .. .. ... . .... . . . ...... ........ . . . . .. ..... . ......... . .. .... . ....... . . .. . . . ..... .... .... . .. . .. . . . . . .... . . . . . .. . . .. .......... ... . . ... . .. . .................. . . . .... .. ........ . . . . . . .. . . . .
lowQualScore : 7 33 3333 0 7 0 3 3 00000 0 0 0 0 8 88 88 0 0 00 8 4 4 00 8 0 8 8 88 00 4 2 0 7 2222 2 7 7 3 222222 0 777 7 0 2 7777 000 8 0 0 22222222222222222222222222222222 0 4 000 0 000000000000000000000000000000000 0 7 7 77777777777777777 6666666 6666 0 2 8 5 6 22 6 888888888 0 2 99 44 0 4 0 777 0 0000 4 0 0 555 0 88 2 22 333 3 0 3 0 0 5 5 5 00000 55 000 55 55 0 0 555 0 0 0 33333 7 3 3 33 88 88 88 00 44 7 7 22 22 777 7 3333 7 3 7 333333 22222222 8 7 3 8 22 00000 3 444444444 0 44 9999 0 0000000 7 3 99 0 5 1 22222 6666 6666 4 99 4 99 0 0 2 0 0 7777 3 3 6 3 0 00 2 0 00 6666666666 000 8 0 666 0 00 8 222222222222222222 0 4 2 2222 00 22222222 2 0 5 0 5 0 88 3 7 7 3
consensus : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-GAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATNCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCTN-TCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACCGGN---TNNAACTATCTGCATTGGNGCTCGTTTT-GTTNC---GTTGA--AAG---TTTTTC----CTGNTGCATTTGTCA---CANCCAG-CTACA-----A--------CGTACATCCGACTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGTTCTCTCGTCGTG-GTATT-G-T-C-T-AGNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNA---GTNTTG---TACCTTTNCT-G-TACTNC--CCATCGGCGATATAACATGTCC---TTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAAGGTNTCC--GACTCGAGTGC-ATC--AG--CATTT--GCGTGGTT--GCTTGC-CTGGTCGATGTTCAA-TCT---GGTCATTTCGNGAAT-TGCTTAAA-GTCTCGAACCAA--CG--G-AAGTCGT--CTG-CC-CCTCCGGGATTTTTT-GCAGTTC-GA-TCA-ACCATCTT--AGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGAC-AACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATG--AC---NT-TC-TCA---CCATTTTGATTCTGTG--ATAAGACA--GCGCC--GATCGGCAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
Reference ( family-4235 ) : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-GAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATNCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCTN-TCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACCGGN---TNNAACTATCTGCATTGGNGCTCGTTTT-GTTNC---GTTGA--AAG---TTTTTC----CTGNTGCATTTGTCA---CANCCAG-CTACA-----A--------CGGACATCCGACTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGTTCTCTCGTCGTG-GTATT-G-T-C-T-AGNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNA---GTNTTG---TACCTTTNCT-G-TACTNC--CCATCGGCGATATAACATGTCC---TTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAAGGTTTCC--GACTNGAGTGC-ATC--AG--CATTT--GCGTGGTT--GCTTGC-CTGGTCGATGTTCAA-TCT---GGTCATTTCGNGAAT-TGCTTAAA-GTCTCGAACCAA--CG--G-AAGTCGT--CTG-CC-CCTCCGGGATTTTTT-GCAGNTCTGA-TCA-ACCATCTT--AGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGAC-AACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATG--AC---NT-TC-TCA---CCATTTTGATTCTGTG--ATAAGACA--GCGCC--GATCGGCAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
gi|1 : GCTAGTGTTTTATTAAAGCGCTCTACCATACAGTCTGACTTAGGATGATACGACGTTGTGTGGGTCTTCTTGGTACCGAAAAG--CTTGCATACTTCA-CTAAACAAACGACTCTCAAACTGAGTGCCT-TGGTCAGAGTGAAT-TGC-ATA-----CGGCACTCCTAATCGAGTAAGGACCTGTTGAACAATTATCTTTGCCACTGT--CTCGGCTTCCATGTTTTC-TA-TGGGAAA--GCTTTCTGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAA-ATGTATCTATTGCCCTTA-TCCGTCATGGGCAGCTCTC-C----AAGTATAT-CGGTTGCTA------TGCGTT---C-CATCGGAGCACCGGT---TTGTACTATCTGCATTGGGGCTTCCTTT-GCTAC---GTTGA--AAACCTTTTTTC----CTGCTGCATTTGTCA---CACCCAA-CTATATATGCA--------CGGACATCCGACTAAAGTCCTGGCCAGTAATAA------CCTTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGACGATCTGTTGCCGTG-GTACTGG-G-C-T-AAAACTGTATGCCGTTC--ACTTGATGGTACCACAGCCTGAA---GCGTTG---TACCTTTGCT-G-T-CTAC--CCATTGGCGATATAATATGCCC---TTGTCTACTTTCAAAAGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATAGCAAAGTAACTAGGCTTTCGTGCCAATCCATTACCCA-GAAGATTTTTTACTAAACTTTAATTT---GTGCCATCA--TTTTCTTGAAGGCTCTCCATGGACGATTTGATCCAAGCTCCCTTACCTTAACGTTGTCGGAAACATACTGGCCGAACACTCTATTACTCCCGAGTCCCTAGTTG-AATCC--ACATTGCTG-TGA-CAAGGTTTCCCGGACCTGAGTGCAATCGAAGCACATTTTAGTGTTGTTAAGCTTGCACTGGCCGATGTTCAACTCT---TGCCA-TTCGT--ATATGCTTCCGTGTCTCCAGCC-A--CG--G-AAGCCATGATTGACCACCTCCGGGGTCTTTTGGAAAATCTGAGGCATACCAGCGT--AAAGAACTGTGGTCAGTGCGGACAGTA-AATTGTTTG----CCATACAAG----TAATGTTTAAAATACCGGGTAA--AATACAC-AACTGCAAGAAGTTCTTTTTTGGTTACGCAGTACTGGCGCTCTGCTTTTGTCAAAGTTCGGC--TGGCATATGCTACTG--GC---CTCTCTTCG---CCATTTAACTTCTGAG--ATAAGACA--GCTCC--TATCGACA-CGTTGCTGGCGTCTGTGTCCAGAATAAATTCTTGATTG--------AAATCTGGCATG-GCTAGCACTGGGGCTTTA-CAA-AGCCTCTCTTTGAGGTCCTGGAAAGCCTGTTGGCATTCCCCACTCCATAGC
gi|11 : GTAC-ATC--AT--CATT---GCATGGTT---TTTAC-TTGGTTGAAGTTCAA-T-----GGTCATTT-GAAAAT-TGCTTAAA-GTATCACACCAAAGTG--C-AAGTTGT---------TCTTAGGGA-TATTT-GCAGTTT--A-TTA-ACCATATTTCAGTAAGCTATGATC-AT---GAC---------ACTT-------------G----TAAT---------ATTTAGTAA--AGTAGGC-AATAGCTAATAGTTGTTTTCTTGTTATGAAGTA------------TTTTATT----CTCAAC--TAGCATAAAC-AATA--ACACGTT-TA-ACA---CCATTTTGATACTGTGAAATAA----------------CGGCACCGTCACTCGTGTTTGTATCCAGGATAAA----TGACTGCG-A----AAATCTGG-ATGCGCAAAAACTGG---TGTAG
gi|12 : atgagactgcaatgtccaaagatttccatagggtaatctattcgTGCTCCATTATTGTGCGTGCTACTGT--TTCA-CCTCCATATCTTG-CAGTGGGAAC--GCTT-CTGTCCATTTTGTGAAATAATCGGACACT--AC-AAGTATGTGGCGATTATCTCTG-TCCGTCTCAGATAATTCACAT----AAA-ATGT-CGGTCGCTA------TTCTCT---C-CATAGGGGTACCAGA---Tttattagtgtataatgcaatgaactgaatgctcattggcaatctcctgtccacgtaaaatttctacccttttctgttaa
gi|13 : aattattTATAGTCAAGGTCAATAA-AATGCA-TTCTTCA----TCTTCTGTTCA--CTTT---ACCCCTAGATGACCAGACGTTCTCTCGTCATG-CTTTT-------T-AGAACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGtcttgcgcatagtacactattcacatagggaaatgtactgatgaatatccttttgaagatcaggccaatattacttttgcctgatgttgcctattgttttagtcacacccaagtgtcctg
gi|14 : GTAGTTCTC-C----TCGTATAT-CTGTAGCAA------TAAGTT---C-CATACGCGTACCAGAAGTTACAACT---TGCATCGGCGCCCGTTTG-GTTGT---ATTGG--GTG---ATTTTCTTTTCTGAT--ATTTTTCA---CAGCC----TACA-----A--------TGTACAT-----TATAGTCAAGGTCAATAA-AATGCA-TTCTTCA----TCTTCTGTTCA--CTTT---ACCCCTAGATGACCAGACGTTCTCTCGTCATG-CTTTT-------T-AGAACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGttttcttcttccgaatcatatcctgattttaaaaaaaataaagtgtctcatcgtgaacagatgaccttgataaaattatttccacatggtataagttataaccgtataaagttctgcgaggatgtgggtttcacgtcatcagcaatcccctttatgatgagactgcaatgtcc
gi|16 : tatgtacacca-CCTCCGCGATTTTTT---AAGTTTG--TCA-ACCAT-TT--AACGAGCAATGGTCCGTTTGTACTGTG-AATTTATTC----TCATAAAGA----TCGTGTTTAAAATGCTTTGTGA--AGTAAACCAACTACAAGAA---CTCTTCTAGTAACGCATTACTT--TTTTGACATTTTTTAGCGATCTG
gi|19 : tggACTGGAGCTTT-GCAA-AGCCTCTCTTTGAGATCCTGGAATGCCTGCTGACATTCCTCACTCCATAGC
gi|2 : cGCGAGTGTCTTTTTGAATCTTTCAACCATACCATCTGACTTAGGATGGTATGGTGTGGTCCGAGTTTTCTTTATAT--AAATGTACTTGCACATACCAGC-GAACAACTGACTCTCATATTGGGT-CCCCTGGTCTGCATGGATCTATTATAGTCATTGGGACACCAAAGCGTGTGATGACTTGTTTCACACTAATGCGTGCTACAGT--TGTTGCCTCCATGTTTTG-CA-CTGGAAA--GCACCCTGTCCATTTAGAAAAGTAATCTACGACA--ACTAAG-ATATATTTGTTGCCTCTT-TCTGTTGCGGGTAATTCGC-CTGGGATGTTTATGCCATCGGTAGTCATCTTCATTGTGC-CATCGGAACACCCGA---TATAGTCATCTTCATTGTAGCTC-CCTT-GTTTCTCAGTGGACTAAG---TT--------CGGTTGCAATTATCA---CAACCA--------------------------ATC---TTGAAGCCCAGGCCAGTAGTA---C--CTCT------GTCT-------AATTTTGCGCACGCCAAGGTGTCCTGA-G--CACTTGTCGTG-GC-TC-A-T-CATAAGTGTTGTTCGTCTTTCCAACTT--TGGGAGTATGGCCTGCATTTTTTTTT---TACCTTTTCTGG-GACTTC--CCATCTTCGGTATAACATactgcactgcctttctccgttaacttggtc
gi|20 : tctggcgcagtatttcaaacggccccgatcaatagctagtcagcttcgacaagttgccaaattttctcgttgagaaaaacacatacactttatctcctttacctatcttttgccaatttagcttggcttcatggtaacgcttctgtctgcatttcgccatgaatatgaacagcattgtgtgcatcttgaagtctctacttcaatccccaggcccatcgtttttgaggaacttggtcgaggtcgcttggcatttggagtagccacctcttgaccaagagttaatgcattacgagtcttgtgttcagcagagagctacgtcatcatcaggcacgttaaatgcatagtcccgatgatgatcatcaacgtatgcacgcagcatgccgTC--AGTGAGCTGTGGTCTGTTCGAACCAAA-AACTGCTTG----CCATACAGA----TAATGCTTGTAATATTTGGTAA--AGTAGAC-AACTGCTAAGAGTTCCTTTC
gi|3 : T-----TCTCCA--CCCTGA-TGCAATTGTAACATTTCCCCTGAACAAGGTCTGC--GACTA-AGTGC-GTC--TG--CATTA--TTGTGAC---ACTTGC-CAGCCCGGTGTTGAA-TTTCAAAGTCGT---ATGCA---GCT-AAA-ACCTCGAACCAT--CG--G---GCCAT--CTG-CC-CTTCTGGA--CTTTT-AAAGTT--GA-GAA-GCCATCTT--AGGGCTCCGTGGTCTGTTCTGACC-----ACTATATGTCGTCCATATAGG----TAATGATGAAAGTATTT--CAATGAGTTGAC-TATAGCCAGAAGCTCCCGTCTAGTGACGCAATAGCTCCTTTCGGGCTTTGTAAAGGTTCTACTGTAGTATGA---AATA--AC---TT-TT-TCAGATCCATCTTGGATCTGGG--ATAAGACA--GCGCCCAAACC--CA-CTAAACTGGCATCAGTATCCAAGATGAA----TG--TGCC-ATCCTCAATC-GG-ATATGACAAAATTGGGGCTGTAATAAGAGCAT-TTTTCAACG-CTTCAAATGACTGTTGACATTCTTCAGTCCAT
gi|4 : ctctttaTA-----CGGCACTCCCAATCGAGTAAGACCCT-TTCTACAATTATTT-TGCCACTGCCCTTCGGCTTCCATGTTTTTTCA-TGGGAAAAAGTTTT-TGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAA-A-GTATCTATTGCCCTTAATCCATCATGGGCAGCTCTT-C----AAGTACAT-CTGTGGCTA------TGCGTT---C-CATCGGAGCACCAGT---CTGCACTATCTGCATTGGGGCTCGTTTC--------------------------TC----CTGTTGCATTTGTCA---CACCCAG-CTAT---------------------TCTGACTGAAGTCATGGCCAGTAATAAT-C-----TTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGATGATCTGTTGTCGTG-GTACT-G-GGC-T-AAAATTGTACGCCGTTC--TCTTGATGGTACCACAGCCTGAA---GCTTTG---TATCTTTGCT-G-T-TTAT--CCATTGGCGATATAATATGTCC---TTGTCTACTTTCAAATGCTCGAACTGAGACCACAAAGAC--AAGGACTCGTCCTTCACTACTGATACCTGAGTAACTAGGCTTCCA-GCCA-TCCATTACCCATGA-----TTTTACTAAATTT--ATTCACAGTGCCATCATTTTTTTTTGAAGGCTCTCCATGGACA--TTGATCCTAGCTCTTTAGCCTTAA---TGTGGGAAACAAACTGGGCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TG--CAAGGTTTCC--GACTAGAGTGC-ATC--AG--CATTT--GTGTGGTA--GCTTGC-CTGGACGATGTTCTA-TCT---CTTCATTTCGTG-GC-TCNNNNNN-NNNNNNNNNNNN--NN--N-NNNNNNN--NNN-NN-NNNNNNNNNNNNNNN-NNNNNNNNNN-CCA-ACCAGCGT--AAAGAACTGTGTTCAGTGCGGACGGTA-AATTGTTTG----CCATACAAG----TAGTGCTTAAAATACCTGGTAA--AATACAC-TACTGCAAGAGGTTCTTTTCTGATCACACAGTACTGGCGCTCTGCTTTCGTCAAtggaatttagttgacttctccgtcagtctatgtaagggcttagccttgtctgaataatgtaagatgaattttctgtagtaggatgttaatcctaagaagctcctgacttctttcgtagatcttgtgtgtcggccattctttgacagcctttattttgttgggatcagttgaaacacctgtctcactgactacatgtcccaaaaagagtacctctctctgacaaagttgaaattatgtcagactaagttttaggttagcctgaagtaatctatcaaaaaccatcttcaggttctgtatttgttctccaaacgtcttggaatgaacaataatgtcgtctaagtagactaaacagacgtcataagataatccatggagaactctctccatgagtcgctcaaatgtagctggggcattacaaagcccaaaagccatgacggtaaattgccaaagaccacc
gi|5 : TCTTCTCTACCCCTAAATGACCGGAAGTTCTCTCATCGTG-ATATT-GCT-C-C-AGTACTGTTCGTCGCCT--GCAGTATAGAGTTATTTCCTTGA---G
gi|5 : A-CAGGGTAACC--TACTCAA-CGC-TTC--AG--CATTT--GCGTGGTT---TTTAC-CTGATCGATGTTCAA-T-----GGTCATTTCAA-AAT-TGCTTGAA-GTCTCGAGCCAA--CGTGA-AAGTAGT--C------CTTCAGGAATTTT---GCAGTTC--A-TTA-ACTATTTC--AGTAAGCTATGATCTGTTTGAACCACA-AACTGCTTG----CCATACAGAGAGATAATGCTTGTAATATTTGGTAA--AGTCGAC-AACTGCTAGTAGTTCCTTTCTTGTCTTGCAGTATTTTCTCTCAGCTTTTGATAATAATCTGC--TAGCATAAGC-AATG--AC---AC-GT-TCA---ACG----------GTG--ACAGCACT--ACACT--GATC-GCAGCATCATTCGCGTCTGTATCCAGTATGAA----TGATTGCGAA----AAATATGG-ATGCGCAAGAACTGGatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaacagggtaacctactcaacgcttcagcatttgcgtggtttttacctgatcgatgttcaatggtcatttcaaaattgcttgaagtctcgagccaacgtgaaagtagtccttcaggaattttgcagttcattaactatttcagtaagctatgatctgtttgaaccacaaactgcttgccatacagagagataatgcttgtaatatttggtaaagtcgacaactgctagtagttcctttcttgtcttgcagtattttctctcagcttttgataataatctgctagcataagcaatgacacgttcaacggtgacagcactacactgatcgcagcatcattcgcgtctgtatccagtatgaatgattgcgaaaaatatggatgcgcaagaactggcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|6 : tcttctctacccctaaatgaccggaagttctctcatcgtgatattgctccagtactgttcgtcgcctgcagtatagagttatttccttgagatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaTGTAGTCCAGGCTAATAAAATT-TG-CTCTTT----ATCTTCGCCAAGGTCTTCTTTACCCCTAAATGACCAGAATTTCTTTCATCGTG-ATATT-GTT-C-C-AGTACTGTTCGATGCTC--ACTATATGGAACAACCGCCTGCA---GTACTGAGTTA-TTTCCCT-GATATTTCTTCC-TC--CGAAACAACATATCCTGATTGAAAACT---AAAGAGTCCCACTGAGAACAGATAGCCTTGAcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|6 : tttT--TTA-CAGGGTAATC--TACTCAA-TGC-ATC--AG--CATTT--GTGTGGTT---TTTAC-CTGGTCGGTGTTCGA-T-----GGTCATTTCAA-AAT-TGCTTAAA-GTCTCAAACCAA--CGT-GCAAGTTGT--C-------CTTCGGGATTTTT--GCAGTTC--A-TTA-ACCATTTC--AGTGAGCTGTGGCCTGTTCGAACCAAATAACTGCTTG----CCATACAGA----TAATGGTTGTAATATTTGGTAA--AGTAGGC-AACTGCTAAGAGTTCCTTCCTTGTTACGCAATATTTTCTCTCAGCATTTGATAATGTTCTGC--TAGCATAAGC-AATGACAC---GT-TCAACA---CCATTTTGATTCTGTG--A-AAG-CATTGCACC--GATC-GCAGCATCACTCcaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggcttttttacagggtaatctactcaatgcatcagcatttgtgtggtttttacctggtcggtgttcgatggtcatttcaaaattgcttaaagtctcaaaccaacgtgcaagttgtccttcgggatttttgcagttcattaaccatttcagtgagctgtggcctgttcgaaccaaataactgcttgccatacagataatggttgtaatatttggtaaagtaggcaactgctaagagttccttccttgttacgcaatattttctctcagcatttgataatgttctgctagcataagcaatgacacgttcaacaccattttgattctgtgaaagcattgcaccgatcgcagcatcactcatccagtat
gi|7 : ttttgtagtccaggctaataaaatttgctctttatcttcgccaaggtcttctttacccctaaatgaccagaatttctttcatcgtgatattgttccagtactgttcgatgctcactatatggaacaaccgcctgcagtactgagttatttccctgatatttcttcctccgaaacaacatatcctgattgaaaactaaagagtcccactgagaacagatagccttgacaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggctttGCTAGTGTTTTATTAAAGCGCTCTACCATTCCGTCTGACTTAGGATGATGCAGCTTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-AAACAAGCGACTCTCAAACTGAGTGCCTTTGGTTAGAATGAAT-TGC-ATA-----CGACACGCTAAATCGAGTAAGGATCTGTTCAACAAGTATatccagtat
gi|9 : tgttttggtcttcgtaaccttagacgatcaacatgaattaattacttggtatttaccacaaggcccacagtcaacttcatatagaggatctgttttcttattgattacagtctaaggacttctccaataactagtaaactttgggaaatggcctgctttccgctgcgaaaagaatacgtttgttaaatgcttgccattttaccttagcatcatggtaacgtttctgtctgcgcatttattggcctgtatgatgccttactgtactgtgcacttcttctaaacggacttttagctcccatatccacttcaatgctgaggtatatcactcacacttggtggcatttcatacataacgtctagaggtgtagcaacctctctaccaagcatgaatgagttcggggtgcaacctgtcgtctagtgctgtgctgaccagtaggccaccataacgtacggcaggtgaacatcccagtgtctttgatgttcatcaacgtaggtgctgagcattgttTTTG-GA-TAGGCAAT-GGTTTCCGTCCACTTGGTAAAATAGTCTGATA-ATTACTAAG-ATGTATCTGT------TT-TCTGTTGTAGGTAA-TCAC-C----AAGGATGT-CCAT-GCTA------CTCGTT---CACATTGGAAAACCGGC---TCCAACTATTTGTATTGGTGCGCGTTTTAGTTTT---GTTGA-----------TAC----TTGGCGCCTTGAGCAAACCATACAGCCTGCA-----ATGTATTGGCGTACATCTTTCTGCAGCCCAGGCCAGTAGTAA---GACTGTCTT---ATTTTGCTCAGGGTTTTTCTGATGCCTAAATGACCTG-CGGTTTCTGATCATGAGTATA-C-T-G-G-AGGAC-ATTCTACGCTG--ATTCATTGGAATCACTGCTT-TG---GTCTT----TATTTTTct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TAAATGTCTTGCTATAATAGCAAATGAATTTTTCCAGCCCGCCTTGTACTTGCGAAAGTACGGCTCCCAAGCCAAGATTGGATTTATGGCGATCGAGTATAAATAGTCCTTATTCATCAGAATAAGTTTATTCATCAGAATAAGACAAAATAGGAGCGCTAGTTAAGGCTCTTATCAGCAACGTCACAATTTTCGTCCCACACAAACTTGACTGAAGATTAATTAAGTCGGTTTTGCAAAGGTCTAGCAATATCTGAAAATTTTGTATATAAATTACAAAAGCCTAAGAAACTCCTGACTTCCCTTGCGTTTTTAGGAATGGGCCATGTTTTGACCGATTCTAGTTTAGAAGGATCTGTAGCTATCCCATTTTCGCTTACAATATGTCCCAGATAGAGAACTTTTTGAAGAAGTAAGCATTTCTTGGGATTCATTTGCAAATTAGCTTCCCTAAGTCGTGTGAAGACTTGTTTTAAATTGGTTAAATGTTGACAAAATTGTAATGTCGTCTATGTAAACTC
Unaligned ( gi|10 ): TATGAGAGGCTCAAACGTCACTGGGGCATTACAAAGTCCAAATGGCATGACTTTAAAATTGTAAAGCCCTTTTCTGGCAAATGCGGTCTTCAGACGATCTTTTTCTGCTACTTCGACCTGGTACCCAACATTTCAATCTAATGTGGAAAAACTGCGCCTGATAATTGACCTAAGAGTCATCTATCCTCGGAAGAGGTATGCATCCTTACAGATGCCGTTGTTTAAGCTTCCTGTAGTTCAATGCAGAAACCTGGGTCGTTCCATCCTTTTTCTTAACCAACACAACTGGAGATGACCTGAGGCTGGACACTCTTCAATGATTCCCCTTCTCAGCATGTCGTCAACATGACGATCCGACTCTTCTGCATATGTTACGGGAGTCGTCTTGAGTGCGTTTATTGATTAGTGCGTACCAGTATATTATGGCGTGTTCTGTCATTTTAGTTTGACCAAGGT
Unaligned ( gi|15 ): CTTTTCAAAATCAGTCCTACGCCTCTGCAATAGCTAGTAAATTTTGGCGACTGTCCCGTTTTGGTTCGTGGAAAATAGACATACACCTCATAATTTACATTAAAGTTCCCTCAATTCAATTTTTGTCATGGTAATGCTTTTGTCTTACCACTGCATTTTGACGAACAATTTTGTGAGCTTGCTCAAGTCTATCTTGCAATTGTCACACCCATT
Unaligned ( gi|17 ): TAGGTAATGGTGAAAGTTTTTAATGGATTTTACAATAGCCAAAAGTTCACGACGGGTGACACAATAACGCCTTTCAGAAGCACTAAAGGTTTTACTATAGT
Unaligned ( gi|18 ): GAGTGCAGTCTGTATTCTCACGAAAACAAGGCCTGCGAGACAGTGCGTCCGCATTACTGTGCGAACGCCCCGCTCTATGTTCAACTATAAAATCATATG
Unaligned ( gi|21 ): TCTTAAATGTTTGCCAGTTTACTTATGCATCATGGTAACGTTTCCGCCTGCGCATTTCTTGGGCTGAATGATGCCTTACTGTACTGTG
Alignments
lowQualScore : 11 1111 1 1 1 22222 11 11 11 1111 111111 111 1111 88888888888888888888888888888888 111 888888888888888888888888888888888 55555555555555555 1111 333333333 111 1111 1 222 11 11 222 1 1 1 22222 11 222 11 11 222 33333 1 1 11 22 111 111 3333 333333 22222222 22222 555555555 111 222222 11111 1111 1111 1111 11 11 3333333333 111 11 222222222222222222 1 2222 33333333 1 1
lowQualScore : 6 88 7777 1 6 2 3 3 55555 1 1 1 1 8 33 22 8 8 99 3 1 1 11 0 8 0 3 22 99 1 1 6 4444 3 6 3 9 999999 1 111 6 1 2 2222 333 0 1 5 33333333333333333333333333333333 1 1 444 1 666666666666666666666666666666666 1 0 8 66666666666666666 8888888 9999 1 0 0 4 6 55 3 777777777 1 1 66 77 1 3 1 111 1 9999 6 1 0 222 1 33 3 11 333 7 1 7 1 1 5 5 5 77777 88 111 88 88 1 1 000 1 1 1 33333 6 3 3 88 33 6 55 111 9999 6 99 99 222 0 0000 6 0 6 333333 11111111 0 6 1 0 99 22222 1 000000000 1 44 6 333 444444 5 5 66 1 5 3 88888 0000 0000 3 33 1 66 5 1 1 1 1 1111 1 5 0 3 1 11 3 8 11 1111111111 444 0 1 555 1 11 3 999999999999999999 5 1 0 1111 44 33333333 3 0 6 1 6 1 99 3 6 0 7
lowQualScore : . .. .... . . . . . ..... . . . . . .. .. . . .. . . . .. . . . . .. .. . . . .... . . . . ...... . ... . . . .... ... . . . ................................ . . ... . ................................. . . . ................. ....... .... . . . . . .. . ......... . . .. .. . . . ... . .... . . . ... . .. . .. ... . . . . . . . . ..... .. ... .. .. . . ... . . . ..... . . . .. .. . .. ... .... . .. .. ... . .... . . . ...... ........ . . . . .. ..... . ......... . .. . ... ...... . . .. . . . ..... .... .... . .. . .. . . . . . .... . . . . . .. . . .. .......... ... . . ... . .. . .................. . . . .... .. ........ . . . . . . .. . . . .
lowQualScore : 7 33 3333 0 7 0 3 3 00000 0 0 0 0 8 88 88 0 0 00 8 4 4 00 8 0 8 2 88 00 4 0 7 2222 2 7 7 3 222222 0 777 7 0 2 7777 000 8 0 0 22222222222222222222222222222222 0 4 000 0 444444444444444444444444444444444 0 7 7 77777777777777777 6666666 6666 0 2 8 5 6 22 6 888888888 0 2 99 44 0 4 0 777 0 0000 4 0 0 555 0 88 2 22 333 3 0 3 0 0 5 5 5 00000 55 000 55 55 0 0 555 0 0 0 33333 7 3 3 33 88 7 00 777 0000 7 22 22 777 7 3333 7 3 7 333333 55555555 8 7 3 8 22 00000 3 444444444 0 44 4 777 111111 7 3 99 0 5 1 22222 6666 6666 4 99 4 99 0 0 2 0 0 7777 3 3 6 3 0 00 2 0 00 6666666666 000 8 0 666 0 00 8 222222222222222222 0 4 2 2222 00 22222222 2 0 5 0 5 0 88 3 7 7 3
consensus : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-GAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATNCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCTN-TCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACCGGN---TNNAACTATCTGCATTGGNGCTCGTTTT-GTTNC---GTTGA--AAG---TTTTTC----CTGNTGCATTTGTCA---CANCCAG-CTACA-----A--------CGTACATCCGACTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGTTCTCTCGTCGTG-GTATT-G-T-C-T-AGNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNA---GTNTTG---TACCTTTNCT-G-TACTNC--CCATCGGCGATATAACATGTCC---TTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAGGGTNNCC--NACTCGAGTGC-ATC--AG--CATTT--GCGTGGTT--GCTTGC-CTGGTCGATGTTCAA-TCT---GGTCATTTCGNGAAT-TGCTTAAA-GTCTCGAACCAA--CG--G-AAGTCGT--CTG-CC-CCTCCGGGATTTTTTG--CAGTTCGA-TCA-ACCATCTT--AGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGA-CAACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATG--AC---NT-TC-TCA---CCATTTTGATTCTGTG--ATAAGACA--GCGCC--GATCGGCAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
Reference ( family-4235 ) : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-GAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATNCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCTN-TCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACCGGN---TNNAACTATCTGCATTGGNGCTCGTTTT-GTTNC---GTTGA--AAG---TTTTTC----CTGNTGCATTTGTCA---CANCCAG-CTACA-----A--------CGTACATCCGACTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGTTCTCTCGTCGTG-GTATT-G-T-C-T-AGNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNA---GTNTTG---TACCTTTNCT-G-TACTNC--CCATCGGCGATATAACATGTCC---TTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAAGGTNTCC--GACTCGAGTGC-ATC--AG--CATTT--GCGTGGTT--GCTTGC-CTGGTCGATGTTCAA-TCT---GGTCATTTCGNGAAT-TGCTTAAA-GTCTCGAACCAA--CG--G-AAGTCGT--CTG-CC-CCTCCGGGATTTTTTG--CAGTTCGA-TCA-ACCATCTT--AGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGA-CAACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATG--AC---NT-TC-TCA---CCATTTTGATTCTGTG--ATAAGACA--GCGCC--GATCGGCAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
gi|1 : GCTAGTGTTTTATTAAAGCGCTCTACCATACAGTCTGACTTAGGATGATACGACGTTGTGTGGGTCTTCTTGGTACCGAAAAG--CTTGCATACTTCA-CTAAACAAACGACTCTCAAACTGAGTGCCT-TGGTCAGAGTGAAT-TGC-ATA-----CGGCACTCCTAATCGAGTAAGGACCTGTTGAACAATTATCTTTGCCACTGT--CTCGGCTTCCATGTTTTC-TA-TGGGAAA--GCTTTCTGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAA-ATGTATCTATTGCCCTTA-TCCGTCATGGGCAGCTCTC-C----AAGTATAT-CGGTTGCTA------TGCGTT---C-CATCGGAGCACCGGT---TTGTACTATCTGCATTGGGGCTTCCTTT-GCTAC---GTTGA--AAACCTTTTTTC----CTGCTGCATTTGTCA---CACCCAA-CTATATATGCA--------CGGACATCCGACTAAAGTCCTGGCCAGTAATAA------CCTTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGACGATCTGTTGCCGTG-GTACTGG-G-C-T-AAAACTGTATGCCGTTC--ACTTGATGGTACCACAGCCTGAA---GCGTTG---TACCTTTGCT-G-T-CTAC--CCATTGGCGATATAATATGCCC---TTGTCTACTTTCAAAAGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATAGCAAAGTAACTAGGCTTTCGTGCCAATCCATTACCCA-GAAGATTTTTTACTAAACTTTAATTT---GTGCCATCA--TTTTCTTGAAGGCTCTCCATGGACGATTTGATCCAAGCTCCCTTACCTTAACGTTGTCGGAAACATACTGGCCGAACACTCTATTACTCCCGAGTCCCTAGTTG-AATCC--ACATTGCTG-TGA-CAAGGTTTCCCGGACCTGAGTGCAATCGAAGCACATTTTAGTGTTGTTAAGCTTGCACTGGCCGATGTTCAACTCT---TGCCA-TTCGT--ATATGCTTCCGTGTCTCCAGCC-A--CG--G-AAGCCATGATTGACCACCTCCGGGGTCTTTTGGAAAATCTGAGGCATACCAGCGT--AAAGAACTGTGGTCAGTGCGGACAGTA-AATTGTTTG----CCATACAAG----TAATGTTTAAAATACCGGGTAA--AATACA-CAACTGCAAGAAGTTCTTTTTTGGTTACGCAGTACTGGCGCTCTGCTTTTGTCAAAGTTCGGC--TGGCATATGCTACTG--GC---CTCTCTTCG---CCATTTAACTTCTGAG--ATAAGACA--GCTCC--TATCGACA-CGTTGCTGGCGTCTGTGTCCAGAATAAATTCTTGATTG--------AAATCTGGCATG-GCTAGCACTGGGGCTTTA-CAA-AGCCTCTCTTTGAGGTCCTGGAAAGCCTGTTGGCATTCCCCACTCCATAGC
gi|11 : A-TAGGGTAATC--TATTCG-GTAC-ATC--AT--CATT---GCATGGTT---TTTAC-TTGGTTGAAGTTCAA-T-----GGTCATTT-GAAAAT-TGCTTAAA-GTATCACACCAAAGTG--C-AAGTTGT---------TCTTAGGGA-TATTTG--CAGTTT-A-TTA-ACCATATTTCAGTAAGCTATGATC-AT---GAC---------ACTT-------------G----TAAT---------ATTTAGTAA--AGTAGG-CAATAGCTAATAGTTGTTTTCTTGTTATGAAGTA------------TTTTATT----CTCAAC--TAGCATAAAC-AATA--ACACGTT-TA-ACA---CCATTTTGATACTGTGAAATAA----------------CGGCACCGTCACTCGTGTTTGTATCCAGGATAAA----TGACTGCG-A----AAATCTGG-ATGCGCAAAAACTGG---TGTAG
gi|12 : atgagactgcaatgtccaaagatttccTGCTCCATTATTGTGCGTGCTACTGT--TTCA-CCTCCATATCTTG-CAGTGGGAAC--GCTT-CTGTCCATTTTGTGAAATAATCGGACACT--AC-AAGTATGTGGCGATTATCTCTG-TCCGTCTCAGATAATTCACAT----AAA-ATGT-CGGTCGCTA------TTCTCT---C-CATAGGGGTACCAGA---Tttattagtgtataatgcaatgaactgaatgctcattggcaatctcctgtccacgtaaaatttctacccttttctgttaa
gi|13 : aattattTATAGTCAAGGTCAATAA-AATGCA-TTCTTCA----TCTTCTGTTCA--CTTT---ACCCCTAGATGACCAGACGTTCTCTCGTCATG-CTTTT-------T-AGAACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGtcttgcgcatagtacactattcacatagggaaatgtactgatgaatatccttttgaagatcaggccaatattacttttgcctgatgttgcctattgttttagtcacacccaagtgtcctg
gi|14 : GTAGTTCTC-C----TCGTATAT-CTGTAGCAA------TAAGTT---C-CATACGCGTACCAGAAGTTACAACT---TGCATCGGCGCCCGTTTG-GTTGT---ATTGG--GTG---ATTTTCTTTTCTGAT--ATTTTTCA---CAGCC----TACA-----A--------TGTACAT-----TATAGTCAAGGTCAATAA-AATGCA-TTCTTCA----TCTTCTGTTCA--CTTT---ACCCCTAGATGACCAGACGTTCTCTCGTCATG-CTTTT-------T-AGAACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGttttcttcttccgaatcatatcctgattttaaaaaaaataaagtgtctcatcgtgaacagatgaccttgataaaattatttccacatggtataagttataaccgtataaagttctgcgaggatgtgggtttcacgtcatcagcaatcccctttatgatgagactgcaatgtcc
gi|16 : tatgtacacca-CCTCCGCGATTTTTTA---AGTTTG--TCA-ACCAT-TT--AACGAGCAATGGTCCGTTTGTACTGTG-AATTTATTC----TCATAAAGA----TCGTGTTTAAAATGCTTTGTGA--AGTAAACCAACTACAAGAA---CTCTTCTAGTAACGCATTACTT--TTTTGACATTTTTTAGCGATCTG
gi|19 : tggACTGGAGCTTT-GCAA-AGCCTCTCTTTGAGATCCTGGAATGCCTGCTGACATTCCTCACTCCATAGC
gi|2 : cGCGAGTGTCTTTTTGAATCTTTCAACCATACCATCTGACTTAGGATGGTATGGTGTGGTCCGAGTTTTCTTTATAT--AAATGTACTTGCACATACCAGC-GAACAACTGACTCTCATATTGGGT-CCCCTGGTCTGCATGGATCTATTATAGTCATTGGGACACCAAAGCGTGTGATGACTTGTTTCACACTAATGCGTGCTACAGT--TGTTGCCTCCATGTTTTG-CA-CTGGAAA--GCACCCTGTCCATTTAGAAAAGTAATCTACGACA--ACTAAG-ATATATTTGTTGCCTCTT-TCTGTTGCGGGTAATTCGC-CTGGGATGTTTATGCCATCGGTAGTCATCTTCATTGTGC-CATCGGAACACCCGA---TATAGTCATCTTCATTGTAGCTC-CCTT-GTTTCTCAGTGGACTAAG---TT--------CGGTTGCAATTATCA---CAACCA--------------------------ATC---TTGAAGCCCAGGCCAGTAGTA---C--CTCT------GTCT-------AATTTTGCGCACGCCAAGGTGTCCTGA-G--CACTTGTCGTG-GC-TC-A-T-CATAAGTGTTGTTCGTCTTTCCAACTT--TGGGAGTATGGCCTGCATTTTTTTTT---TACCTTTTCTGG-GACTTC--CCATCTTCGGTATAACATactgcactgcctttctccgttaacttggtc
gi|20 : tctggcgcagtatttcaaacggccccgatcaatagctagtcagcttcgacaagttgccaaattttctcgttgagaaaaacacatacactttatctcctttacctatcttttgccaatttagcttggcttcatggtaacgcttctgtctgcatttcgccatgaatatgaacagcattgtgtgcatcttgaagtctctacttcaatccccaggcccatcgtttttgaggaacttggtcgaggtcgcttggcatttggagtagccacctcttgaccaagagttaatgcattacgagtcttgtgttcagcagagagctacgtcatcatcaggcacgttaaatgcatagtcccgatgatgatcatcaacgtatgcacgcagcatgccgTC--AGTGAGCTGTGGTCTGTTCGAACCAAA-AACTGCTTG----CCATACAGA----TAATGCTTGTAATATTTGGTAA--AGTAGA-CAACTGCTAAGAGTTCCTTTC
gi|3 : T-----TCTCCA--CCCTGA-TGCAATTGTAACATTTCCCCTGAACAAGGTCTGC--GACT-AAGTGC-GTC--TG--CATTA--TTGTGAC---ACTTGC-CAGCCCGGTGTTGAA-TTTCAAAGTCGT---ATGCA---GCT-AAA-ACCTCGAACCAT--CG--G---GCCAT--CTG-CC-CTTCTGGA--CTTTTA--AAGTT-GA-GAA-GCCATCTT--AGGGCTCCGTGGTCTGTTCTGACC-----ACTATATGTCGTCCATATAGG----TAATGATGAAAGTATTT--CAATGAGTTGA-CTATAGCCAGAAGCTCCCGTCTAGTGACGCAATAGCTCCTTTCGGGCTTTGTAAAGGTTCTACTGTAGTATGA---AATA--AC---TT-TT-TCAGATCCATCTTGGATCTGGG--ATAAGACA--GCGCCCAAACC--CA-CTAAACTGGCATCAGTATCCAAGATGAA----TG--TGCC-ATCCTCAATC-GG-ATATGACAAAATTGGGGCTGTAATAAGAGCAT-TTTTCAACG-CTTCAAATGACTGTTGACATTCTTCAGTCCAT
gi|4 : ctctttaTA-----CGGCACTCCCAATCGAGTAAGACCCT-TTCTACAATTATTT-TGCCACTGCCCTTCGGCTTCCATGTTTTTTCA-TGGGAAAAAGTTTT-TGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAA-A-GTATCTATTGCCCTTAATCCATCATGGGCAGCTCTT-C----AAGTACAT-CTGTGGCTA------TGCGTT---C-CATCGGAGCACCAGT---CTGCACTATCTGCATTGGGGCTCGTTTC--------------------------TC----CTGTTGCATTTGTCA---CACCCAG-CTAT---------------------TCTGACTGAAGTCATGGCCAGTAATAAT-C-----TTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGATGATCTGTTGTCGTG-GTACT-G-GGC-T-AAAATTGTACGCCGTTC--TCTTGATGGTACCACAGCCTGAA---GCTTTG---TATCTTTGCT-G-T-TTAT--CCATTGGCGATATAATATGTCC---TTGTCTACTTTCAAATGCTCGAACTGAGACCACAAAGAC--AAGGACTCGTCCTTCACTACTGATACCTGAGTAACTAGGCTTCCA-GCCA-TCCATTACCCATGA-----TTTTACTAAATTT--ATTCACAGTGCCATCATTTTTTTTTGAAGGCTCTCCATGGACA--TTGATCCTAGCTCTTTAGCCTTAA---TGTGGGAAACAAACTGGGCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TG--CAAGGTTTCC--GACTAGAGTGC-ATC--AG--CATTT--GTGTGGTA--GCTTGC-CTGGACGATGTTCTA-TCT---CTTCATTTCGTGGCT-CNNNNNNN-NNNNNNNNNNNN--NN--N-NNNNNNN--NNN-NN-NNNNNNNNNNNNNNNN--NNNNNNNN-CCA-ACCAGCGT--AAAGAACTGTGTTCAGTGCGGACGGTA-AATTGTTTG----CCATACAAG----TAGTGCTTAAAATACCTGGTAA--AATACA-CTACTGCAAGAGGTTCTTTTCTGATCACACAGTACTGGCGCTCTGCTTTCGTCAAtggaatttagttgacttctccgtcagtctatgtaagggcttagccttgtctgaataatgtaagatgaattttctgtagtaggatgttaatcctaagaagctcctgacttctttcgtagatcttgtgtgtcggccattctttgacagcctttattttgttgggatcagttgaaacacctgtctcactgactacatgtcccaaaaagagtacctctctctgacaaagttgaaattatgtcagactaagttttaggttagcctgaagtaatctatcaaaaaccatcttcaggttctgtatttgttctccaaacgtcttggaatgaacaataatgtcgtctaagtagactaaacagacgtcataagataatccatggagaactctctccatgagtcgctcaaatgtagctggggcattacaaagcccaaaagccatgacggtaaattgccaaagaccacc
gi|5 : TCTTCTCTACCCCTAAATGACCGGAAGTTCTCTCATCGTG-ATATT-GCT-C-C-AGTACTGTTCGTCGCCT--GCAGTATAGAGTTATTTCCTTGA---G
gi|5 : A-CAGGGTAACC--TACTCAA-CGC-TTC--AG--CATTT--GCGTGGTT---TTTAC-CTGATCGATGTTCAA-T-----GGTCATTTCAA-AAT-TGCTTGAA-GTCTCGAGCCAA--CGTGA-AAGTAGT--C------CTTCAGGAATTTT--G--CAGTTC-A-TTA-ACTATTTC--AGTAAGCTATGATCTGTTTGAACCACA-AACTGCTTG----CCATACAGAGAGATAATGCTTGTAATATTTGGTAA--AGTCGA-CAACTGCTAGTAGTTCCTTTCTTGTCTTGCAGTATTTTCTCTCAGCTTTTGATAATAATCTGC--TAGCATAAGC-AATG--AC---AC-GT-TCA---ACG----------GTG--ACAGCACT--ACACT--GATC-GCAGCATCATTCGCGTCTGTATCCAGTATGAA----TGATTGCGAA----AAATATGG-ATGCGCAAGAACTGGatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaacagggtaacctactcaacgcttcagcatttgcgtggtttttacctgatcgatgttcaatggtcatttcaaaattgcttgaagtctcgagccaacgtgaaagtagtccttcaggaattttgcagttcattaactatttcagtaagctatgatctgtttgaaccacaaactgcttgccatacagagagataatgcttgtaatatttggtaaagtcgacaactgctagtagttcctttcttgtcttgcagtattttctctcagcttttgataataatctgctagcataagcaatgacacgttcaacggtgacagcactacactgatcgcagcatcattcgcgtctgtatccagtatgaatgattgcgaaaaatatggatgcgcaagaactggcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|6 : tcttctctacccctaaatgaccggaagttctctcatcgtgatattgctccagtactgttcgtcgcctgcagtatagagttatttccttgagatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaTGTAGTCCAGGCTAATAAAATT-TG-CTCTTT----ATCTTCGCCAAGGTCTTCTTTACCCCTAAATGACCAGAATTTCTTTCATCGTG-ATATT-GTT-C-C-AGTACTGTTCGATGCTC--ACTATATGGAACAACCGCCTGCA---GTACTGAGTTA-TTTCCCT-GATATTTCTTCC-TC--CGAAACAACATATCCTGATTGAAAACT---AAAGAGTCCCACTGAGAACAGATAGCCTTGAcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|6 : tttT--TTA-CAGGGTAATC--TACTCAA-TGC-ATC--AG--CATTT--GTGTGGTT---TTTAC-CTGGTCGGTGTTCGA-T-----GGTCATTTCAA-AAT-TGCTTAAA-GTCTCAAACCAA--CGT-GCAAGTTGT--C-------CTTCGGGATTTT-TG--CAGTTC-A-TTA-ACCATTTC--AGTGAGCTGTGGCCTGTTCGAACCAAATAACTGCTTG----CCATACAGA----TAATGGTTGTAATATTTGGTAA--AGTAGG-CAACTGCTAAGAGTTCCTTCCTTGTTACGCAATATTTTCTCTCAGCATTTGATAATGTTCTGC--TAGCATAAGC-AATGACAC---GT-TCAACA---CCATTTTGATTCTGTG--A-AAG-CATTGCACC--GATC-GCAGCATCACTCcaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggcttttttacagggtaatctactcaatgcatcagcatttgtgtggtttttacctggtcggtgttcgatggtcatttcaaaattgcttaaagtctcaaaccaacgtgcaagttgtccttcgggatttttgcagttcattaaccatttcagtgagctgtggcctgttcgaaccaaataactgcttgccatacagataatggttgtaatatttggtaaagtaggcaactgctaagagttccttccttgttacgcaatattttctctcagcatttgataatgttctgctagcataagcaatgacacgttcaacaccattttgattctgtgaaagcattgcaccgatcgcagcatcactcatccagtat
gi|7 : ttttgtagtccaggctaataaaatttgctctttatcttcgccaaggtcttctttacccctaaatgaccagaatttctttcatcgtgatattgttccagtactgttcgatgctcactatatggaacaaccgcctgcagtactgagttatttccctgatatttcttcctccgaaacaacatatcctgattgaaaactaaagagtcccactgagaacagatagccttgacaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggctttGCTAGTGTTTTATTAAAGCGCTCTACCATTCCGTCTGACTTAGGATGATGCAGCTTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-AAACAAGCGACTCTCAAACTGAGTGCCTTTGGTTAGAATGAAT-TGC-ATA-----CGACACGCTAAATCGAGTAAGGATCTGTTCAACAAGTATatccagtat
gi|9 : tgttttggtcttcgtaaccttagacgatcaacatgaattaattacttggtatttaccacaaggcccacagtcaacttcatatagaggatctgttttcttattgattacagtctaaggacttctccaataactagtaaactttgggaaatggcctgctttccgctgcgaaaagaatacgtttgttaaatgcttgccattttaccttagcatcatggtaacgtttctgtctgcgcatttattggcctgtatgatgccttactgtactgtgcacttcttctaaacggacttttagctcccatatccacttcaatgctgaggtatatcactcacacttggtggcatttcatacataacgtctagaggtgtagcaacctctctaccaagcatgaatgagttcggggtgcaacctgtcgtctagtgctgtgctgaccagtaggccaccataacgtacggcaggtgaacatcccagtgtctttgatgttcatcaacgtaggtgctgagcattgttTTTG-GA-TAGGCAAT-GGTTTCCGTCCACTTGGTAAAATAGTCTGATA-ATTACTAAG-ATGTATCTGTT------T-TCTGTTGTAGGTAAT-CAC-C----AAGGATGT-CCAT-GCTA------CTCGTT---CACATTGGAAAACCGGC---TCCAACTATTTGTATTGGTGCGCGTTTTAGTTTT---GTTGA-----------TAC----TTGGCGCCTTGAGCAAACCATACAGCCTGCA-----ATGTATTGGCGTACATCTTTCTGCAGCCCAGGCCAGTAGTAA---GACTGTCTT---ATTTTGCTCAGGGTTTTTCTGATGCCTAAATGACCTG-CGGTTTCTGATCATGAGTATA-C-T-G-G-AGGAC-ATTCTACGCTG--ATTCATTGGAATCACTGCTT-TG---GTCTT----TATTTTTct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TAAATGTCTTGCTATAATAGCAAATGAATTTTTCCAGCCCGCCTTGTACTTGCGAAAGTACGGCTCCCAAGCCAAGATTGGATTTATGGCGATCGAGTATAAATAGTCCTTATTCATCAGAATAAGTTTATTCATCAGAATAAGACAAAATAGGAGCGCTAGTTAAGGCTCTTATCAGCAACGTCACAATTTTCGTCCCACACAAACTTGACTGAAGATTAATTAAGTCGGTTTTGCAAAGGTCTAGCAATATCTGAAAATTTTGTATATAAATTACAAAAGCCTAAGAAACTCCTGACTTCCCTTGCGTTTTTAGGAATGGGCCATGTTTTGACCGATTCTAGTTTAGAAGGATCTGTAGCTATCCCATTTTCGCTTACAATATGTCCCAGATAGAGAACTTTTTGAAGAAGTAAGCATTTCTTGGGATTCATTTGCAAATTAGCTTCCCTAAGTCGTGTGAAGACTTGTTTTAAATTGGTTAAATGTTGACAAAATTGTAATGTCGTCTATGTAAACTC
Unaligned ( gi|10 ): TATGAGAGGCTCAAACGTCACTGGGGCATTACAAAGTCCAAATGGCATGACTTTAAAATTGTAAAGCCCTTTTCTGGCAAATGCGGTCTTCAGACGATCTTTTTCTGCTACTTCGACCTGGTACCCAACATTTCAATCTAATGTGGAAAAACTGCGCCTGATAATTGACCTAAGAGTCATCTATCCTCGGAAGAGGTATGCATCCTTACAGATGCCGTTGTTTAAGCTTCCTGTAGTTCAATGCAGAAACCTGGGTCGTTCCATCCTTTTTCTTAACCAACACAACTGGAGATGACCTGAGGCTGGACACTCTTCAATGATTCCCCTTCTCAGCATGTCGTCAACATGACGATCCGACTCTTCTGCATATGTTACGGGAGTCGTCTTGAGTGCGTTTATTGATTAGTGCGTACCAGTATATTATGGCGTGTTCTGTCATTTTAGTTTGACCAAGGT
Unaligned ( gi|15 ): CTTTTCAAAATCAGTCCTACGCCTCTGCAATAGCTAGTAAATTTTGGCGACTGTCCCGTTTTGGTTCGTGGAAAATAGACATACACCTCATAATTTACATTAAAGTTCCCTCAATTCAATTTTTGTCATGGTAATGCTTTTGTCTTACCACTGCATTTTGACGAACAATTTTGTGAGCTTGCTCAAGTCTATCTTGCAATTGTCACACCCATT
Unaligned ( gi|17 ): TAGGTAATGGTGAAAGTTTTTAATGGATTTTACAATAGCCAAAAGTTCACGACGGGTGACACAATAACGCCTTTCAGAAGCACTAAAGGTTTTACTATAGT
Unaligned ( gi|18 ): GAGTGCAGTCTGTATTCTCACGAAAACAAGGCCTGCGAGACAGTGCGTCCGCATTACTGTGCGAACGCCCCGCTCTATGTTCAACTATAAAATCATATG
Unaligned ( gi|21 ): TCTTAAATGTTTGCCAGTTTACTTATGCATCATGGTAACGTTTCCGCCTGCGCATTTCTTGGGCTGAATGATGCCTTACTGTACTGTG
Alignments
lowQualScore : 11 1111 1 1 1 22222 11 11 11 1111 111111 111 1111 88888888888888888888888888888888 111 888888888888888888888888888888888 55555555555555555 1111 333333333 111 1111 1 222 11 11 222 1 1 1 22222 11 222 11 11 222 33333 1 1 11 22 111 111 3333 333333 22222222 22222 555555555 111 222222 11111 1111 1111 1111 11 11 3333333333 111 11 222222222222222222 1 2222 33333333 1 1
lowQualScore : 6 88 7777 1 6 2 3 3 55555 1 1 1 1 8 33 22 8 8 99 3 1 1 11 0 8 0 3 22 99 1 1 6 4444 3 6 3 9 999999 1 111 6 1 2 2222 333 0 1 5 33333333333333333333333333333333 1 1 444 1 666666666666666666666666666666666 1 0 8 66666666666666666 8888888 9999 1 0 0 4 6 55 3 777777777 1 1 66 77 1 3 1 111 1 9999 6 1 0 222 1 33 3 11 333 7 1 7 1 1 5 5 5 77777 88 111 88 88 1 1 000 1 1 1 33333 6 3 3 88 33 6 22 000 9999 6 99 99 222 0 0000 6 0 6 333333 11111111 0 6 1 0 99 22222 1 000000000 1 44 2 333 444444 5 5 66 1 5 3 88888 0000 0000 3 33 1 66 5 1 1 1 1 1111 1 5 0 3 1 11 3 8 11 1111111111 444 0 1 555 1 11 3 999999999999999999 5 1 0 1111 44 33333333 3 0 6 1 6 1 99 3 6 0 7
lowQualScore : . .. .... . . . . . ..... . . . . . .. .. . . .. . . . .. . . . . .. .. . . . .... . . . . ...... . ... . . . .... ... . . . ................................ . . ... . ................................. . . . ................. ....... .... . . . . . .. . ......... . . .. .. . . . ... . .... . . . ... . .. . .. ... . . . . . . . . ..... .. ... .. .. . . ... . . . ..... . . . .. .. . .. ... .... . .. .. ... . .... . . . ...... ........ . . . . .. ..... . ......... . .. . ... ...... . . .. . . . ..... .... .... . .. . .. . . . . . .... . . . . . .. . . .. .......... ... . . ... . .. . .................. . . . .... .. ........ . . . . . . .. . . . .
lowQualScore : 7 33 3333 0 7 0 3 3 00000 0 0 0 0 8 88 88 0 0 00 8 4 4 00 8 0 8 2 88 00 4 0 7 2222 2 7 7 3 222222 0 777 7 0 2 7777 000 8 0 0 22222222222222222222222222222222 0 4 000 0 444444444444444444444444444444444 0 7 7 77777777777777777 6666666 6666 0 2 8 5 6 22 6 888888888 0 2 99 44 0 4 0 777 0 0000 4 0 0 555 0 88 2 22 333 3 0 3 0 0 5 5 5 00000 55 000 55 55 0 0 555 0 0 0 33333 7 3 3 33 88 7 00 222 0000 7 22 22 777 7 3333 7 3 7 333333 55555555 8 7 3 8 22 00000 3 444444444 0 44 9 777 111111 7 3 99 0 5 1 22222 6666 6666 4 99 4 99 0 0 2 0 0 7777 3 3 6 3 0 00 2 0 00 6666666666 000 8 0 666 0 00 8 222222222222222222 0 4 2 2222 00 22222222 2 0 5 0 5 0 88 3 7 7 3
consensus : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-GAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATNCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCTN-TCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACCGGN---TNNAACTATCTGCATTGGNGCTCGTTTT-GTTNC---GTTGA--AAG---TTTTTC----CTGNTGCATTTGTCA---CANCCAG-CTACA-----A--------CGTACATCCGACTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGTTCTCTCGTCGTG-GTATT-G-T-C-T-AGNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNA---GTNTTG---TACCTTTNCT-G-TACTNC--CCATCGGCGATATAACATGTCC---TTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAGGGTNNCC--NACTCGAGTGC-ATC--AG--CATTT--GCGTGGTT--GCTTGC-CTGGTCGATGTTCAA-TCT---GGTCATTTCGNGAAT-TGCTTAAA-GTCTCGAACCAA--CG--G-AAGTCGT--CTG-CC-CCTCCGGGATTTTTTG--CAGTTCGA-TCA-ACCATCTT--AGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGA-CAACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATG--AC---NT-TC-TCA---CCATTTTGATTCTGTG--ATAAGACA--GCGCC--GATCGGCAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
Reference ( family-4235 ) : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-GAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATNCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCTN-TCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACCGGN---TNNAACTATCTGCATTGGNGCTCGTTTT-GTTNC---GTTGA--AAG---TTTTTC----CTGNTGCATTTGTCA---CANCCAG-CTACA-----A--------CGTACATCCGACTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGTTCTCTCGTCGTG-GTATT-G-T-C-T-AGNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNA---GTNTTG---TACCTTTNCT-G-TACTNC--CCATCGGCGATATAACATGTCC---TTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAGGGTNNCC--NACTCGAGTGC-ATC--AG--CATTT--GCGTGGTT--GCTTGC-CTGGTCGATGTTCAA-TCT---GGTCATTTCGNGAAT-TGCTTAAA-GTCTCGAACCAA--CG--G-AAGTCGT--CTG-CC-CCTCCGGGATTTTTTG--CAGTTCGA-TCA-ACCATCTT--AGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGA-CAACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATG--AC---NT-TC-TCA---CCATTTTGATTCTGTG--ATAAGACA--GCGCC--GATCGGCAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
gi|1 : GCTAGTGTTTTATTAAAGCGCTCTACCATACAGTCTGACTTAGGATGATACGACGTTGTGTGGGTCTTCTTGGTACCGAAAAG--CTTGCATACTTCA-CTAAACAAACGACTCTCAAACTGAGTGCCT-TGGTCAGAGTGAAT-TGC-ATA-----CGGCACTCCTAATCGAGTAAGGACCTGTTGAACAATTATCTTTGCCACTGT--CTCGGCTTCCATGTTTTC-TA-TGGGAAA--GCTTTCTGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAA-ATGTATCTATTGCCCTTA-TCCGTCATGGGCAGCTCTC-C----AAGTATAT-CGGTTGCTA------TGCGTT---C-CATCGGAGCACCGGT---TTGTACTATCTGCATTGGGGCTTCCTTT-GCTAC---GTTGA--AAACCTTTTTTC----CTGCTGCATTTGTCA---CACCCAA-CTATATATGCA--------CGGACATCCGACTAAAGTCCTGGCCAGTAATAA------CCTTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGACGATCTGTTGCCGTG-GTACTGG-G-C-T-AAAACTGTATGCCGTTC--ACTTGATGGTACCACAGCCTGAA---GCGTTG---TACCTTTGCT-G-T-CTAC--CCATTGGCGATATAATATGCCC---TTGTCTACTTTCAAAAGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATAGCAAAGTAACTAGGCTTTCGTGCCAATCCATTACCCA-GAAGATTTTTTACTAAACTTTAATTT---GTGCCATCA--TTTTCTTGAAGGCTCTCCATGGACGATTTGATCCAAGCTCCCTTACCTTAACGTTGTCGGAAACATACTGGCCGAACACTCTATTACTCCCGAGTCCCTAGTTG-AATCC--ACATTGCTG-TGA-CAAGGTTTCCCGGACCTGAGTGCAATCGAAGCACATTTTAGTGTTGTTAAGCTTGCACTGGCCGATGTTCAACTCT---TGCCA-TTCGT--ATATGCTTCCGTGTCTCCAGCC-A--CG--G-AAGCCATGATTGACCACCTCCGGGGTCTTTTGGAAAATCTGAGGCATACCAGCGT--AAAGAACTGTGGTCAGTGCGGACAGTA-AATTGTTTG----CCATACAAG----TAATGTTTAAAATACCGGGTAA--AATACA-CAACTGCAAGAAGTTCTTTTTTGGTTACGCAGTACTGGCGCTCTGCTTTTGTCAAAGTTCGGC--TGGCATATGCTACTG--GC---CTCTCTTCG---CCATTTAACTTCTGAG--ATAAGACA--GCTCC--TATCGACA-CGTTGCTGGCGTCTGTGTCCAGAATAAATTCTTGATTG--------AAATCTGGCATG-GCTAGCACTGGGGCTTTA-CAA-AGCCTCTCTTTGAGGTCCTGGAAAGCCTGTTGGCATTCCCCACTCCATAGC
gi|11 : A-TAGGGTAATC--TATTCG-GTAC-ATC--AT--CATT---GCATGGTT---TTTAC-TTGGTTGAAGTTCAA-T-----GGTCATTT-GAAAAT-TGCTTAAA-GTATCACACCAAAGTG--C-AAGTTGT---------TCTTAGGGA-TATTTG--CAGTTT-A-TTA-ACCATATTTCAGTAAGCTATGATC-AT---GAC---------ACTT-------------G----TAAT---------ATTTAGTAA--AGTAGG-CAATAGCTAATAGTTGTTTTCTTGTTATGAAGTA------------TTTTATT----CTCAAC--TAGCATAAAC-AATA--ACACGTT-TA-ACA---CCATTTTGATACTGTGAAATAA----------------CGGCACCGTCACTCGTGTTTGTATCCAGGATAAA----TGACTGCG-A----AAATCTGG-ATGCGCAAAAACTGG---TGTAG
gi|12 : atgagactgcaatgtccaaagatttccTGCTCCATTATTGTGCGTGCTACTGT--TTCA-CCTCCATATCTTG-CAGTGGGAAC--GCTT-CTGTCCATTTTGTGAAATAATCGGACACT--AC-AAGTATGTGGCGATTATCTCTG-TCCGTCTCAGATAATTCACAT----AAA-ATGT-CGGTCGCTA------TTCTCT---C-CATAGGGGTACCAGA---Tttattagtgtataatgcaatgaactgaatgctcattggcaatctcctgtccacgtaaaatttctacccttttctgttaa
gi|13 : aattattTATAGTCAAGGTCAATAA-AATGCA-TTCTTCA----TCTTCTGTTCA--CTTT---ACCCCTAGATGACCAGACGTTCTCTCGTCATG-CTTTT-------T-AGAACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGtcttgcgcatagtacactattcacatagggaaatgtactgatgaatatccttttgaagatcaggccaatattacttttgcctgatgttgcctattgttttagtcacacccaagtgtcctg
gi|14 : GTAGTTCTC-C----TCGTATAT-CTGTAGCAA------TAAGTT---C-CATACGCGTACCAGAAGTTACAACT---TGCATCGGCGCCCGTTTG-GTTGT---ATTGG--GTG---ATTTTCTTTTCTGAT--ATTTTTCA---CAGCC----TACA-----A--------TGTACAT-----TATAGTCAAGGTCAATAA-AATGCA-TTCTTCA----TCTTCTGTTCA--CTTT---ACCCCTAGATGACCAGACGTTCTCTCGTCATG-CTTTT-------T-AGAACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGttttcttcttccgaatcatatcctgattttaaaaaaaataaagtgtctcatcgtgaacagatgaccttgataaaattatttccacatggtataagttataaccgtataaagttctgcgaggatgtgggtttcacgtcatcagcaatcccctttatgatgagactgcaatgtcc
gi|16 : tatgtacacca-CCTCCGCGATTTTTTA---AGTTTG--TCA-ACCAT-TT--AACGAGCAATGGTCCGTTTGTACTGTG-AATTTATTC----TCATAAAGA----TCGTGTTTAAAATGCTTTGTGA--AGTAAACCAACTACAAGAA---CTCTTCTAGTAACGCATTACTT--TTTTGACATTTTTTAGCGATCTG
gi|19 : tggACTGGAGCTTT-GCAA-AGCCTCTCTTTGAGATCCTGGAATGCCTGCTGACATTCCTCACTCCATAGC
gi|2 : cGCGAGTGTCTTTTTGAATCTTTCAACCATACCATCTGACTTAGGATGGTATGGTGTGGTCCGAGTTTTCTTTATAT--AAATGTACTTGCACATACCAGC-GAACAACTGACTCTCATATTGGGT-CCCCTGGTCTGCATGGATCTATTATAGTCATTGGGACACCAAAGCGTGTGATGACTTGTTTCACACTAATGCGTGCTACAGT--TGTTGCCTCCATGTTTTG-CA-CTGGAAA--GCACCCTGTCCATTTAGAAAAGTAATCTACGACA--ACTAAG-ATATATTTGTTGCCTCTT-TCTGTTGCGGGTAATTCGC-CTGGGATGTTTATGCCATCGGTAGTCATCTTCATTGTGC-CATCGGAACACCCGA---TATAGTCATCTTCATTGTAGCTC-CCTT-GTTTCTCAGTGGACTAAG---TT--------CGGTTGCAATTATCA---CAACCA--------------------------ATC---TTGAAGCCCAGGCCAGTAGTA---C--CTCT------GTCT-------AATTTTGCGCACGCCAAGGTGTCCTGA-G--CACTTGTCGTG-GC-TC-A-T-CATAAGTGTTGTTCGTCTTTCCAACTT--TGGGAGTATGGCCTGCATTTTTTTTT---TACCTTTTCTGG-GACTTC--CCATCTTCGGTATAACATactgcactgcctttctccgttaacttggtc
gi|20 : tctggcgcagtatttcaaacggccccgatcaatagctagtcagcttcgacaagttgccaaattttctcgttgagaaaaacacatacactttatctcctttacctatcttttgccaatttagcttggcttcatggtaacgcttctgtctgcatttcgccatgaatatgaacagcattgtgtgcatcttgaagtctctacttcaatccccaggcccatcgtttttgaggaacttggtcgaggtcgcttggcatttggagtagccacctcttgaccaagagttaatgcattacgagtcttgtgttcagcagagagctacgtcatcatcaggcacgttaaatgcatagtcccgatgatgatcatcaacgtatgcacgcagcatgccgTC--AGTGAGCTGTGGTCTGTTCGAACCAAA-AACTGCTTG----CCATACAGA----TAATGCTTGTAATATTTGGTAA--AGTAGA-CAACTGCTAAGAGTTCCTTTC
gi|3 : T-----TCTCCA--CCCTGA-TGCAATTGTAACATTTCCCCTGAACAAGGTCTGC--GACT-AAGTGC-GTC--TG--CATTA--TTGTGAC---ACTTGC-CAGCCCGGTGTTGAA-TTTCAAAGTCGT---ATGCA---GCT-AAA-ACCTCGAACCAT--CG--G---GCCAT--CTG-CC-CTTCTGGA--CTTTTA--AAGTT-GA-GAA-GCCATCTT--AGGGCTCCGTGGTCTGTTCTGACC-----ACTATATGTCGTCCATATAGG----TAATGATGAAAGTATTT--CAATGAGTTGA-CTATAGCCAGAAGCTCCCGTCTAGTGACGCAATAGCTCCTTTCGGGCTTTGTAAAGGTTCTACTGTAGTATGA---AATA--AC---TT-TT-TCAGATCCATCTTGGATCTGGG--ATAAGACA--GCGCCCAAACC--CA-CTAAACTGGCATCAGTATCCAAGATGAA----TG--TGCC-ATCCTCAATC-GG-ATATGACAAAATTGGGGCTGTAATAAGAGCAT-TTTTCAACG-CTTCAAATGACTGTTGACATTCTTCAGTCCAT
gi|4 : ctctttaTA-----CGGCACTCCCAATCGAGTAAGACCCT-TTCTACAATTATTT-TGCCACTGCCCTTCGGCTTCCATGTTTTTTCA-TGGGAAAAAGTTTT-TGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAA-A-GTATCTATTGCCCTTAATCCATCATGGGCAGCTCTT-C----AAGTACAT-CTGTGGCTA------TGCGTT---C-CATCGGAGCACCAGT---CTGCACTATCTGCATTGGGGCTCGTTTC--------------------------TC----CTGTTGCATTTGTCA---CACCCAG-CTAT---------------------TCTGACTGAAGTCATGGCCAGTAATAAT-C-----TTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGATGATCTGTTGTCGTG-GTACT-G-GGC-T-AAAATTGTACGCCGTTC--TCTTGATGGTACCACAGCCTGAA---GCTTTG---TATCTTTGCT-G-T-TTAT--CCATTGGCGATATAATATGTCC---TTGTCTACTTTCAAATGCTCGAACTGAGACCACAAAGAC--AAGGACTCGTCCTTCACTACTGATACCTGAGTAACTAGGCTTCCA-GCCA-TCCATTACCCATGA-----TTTTACTAAATTT--ATTCACAGTGCCATCATTTTTTTTTGAAGGCTCTCCATGGACA--TTGATCCTAGCTCTTTAGCCTTAA---TGTGGGAAACAAACTGGGCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TG--CAAGGTTTCC--GACTAGAGTGC-ATC--AG--CATTT--GTGTGGTA--GCTTGC-CTGGACGATGTTCTA-TCT---CTTCATTTCGTGGCT-CNNNNNNN-NNNNNNNNNNNN--NN--N-NNNNNNN--NNN-NN-NNNNNNNNNNNNNNNN--NNNNNNNN-CCA-ACCAGCGT--AAAGAACTGTGTTCAGTGCGGACGGTA-AATTGTTTG----CCATACAAG----TAGTGCTTAAAATACCTGGTAA--AATACA-CTACTGCAAGAGGTTCTTTTCTGATCACACAGTACTGGCGCTCTGCTTTCGTCAAtggaatttagttgacttctccgtcagtctatgtaagggcttagccttgtctgaataatgtaagatgaattttctgtagtaggatgttaatcctaagaagctcctgacttctttcgtagatcttgtgtgtcggccattctttgacagcctttattttgttgggatcagttgaaacacctgtctcactgactacatgtcccaaaaagagtacctctctctgacaaagttgaaattatgtcagactaagttttaggttagcctgaagtaatctatcaaaaaccatcttcaggttctgtatttgttctccaaacgtcttggaatgaacaataatgtcgtctaagtagactaaacagacgtcataagataatccatggagaactctctccatgagtcgctcaaatgtagctggggcattacaaagcccaaaagccatgacggtaaattgccaaagaccacc
gi|5 : TCTTCTCTACCCCTAAATGACCGGAAGTTCTCTCATCGTG-ATATT-GCT-C-C-AGTACTGTTCGTCGCCT--GCAGTATAGAGTTATTTCCTTGA---G
gi|5 : A-CAGGGTAACC--TACTCAA-CGC-TTC--AG--CATTT--GCGTGGTT---TTTAC-CTGATCGATGTTCAA-T-----GGTCATTTCAA-AAT-TGCTTGAA-GTCTCGAGCCAA--CGTGA-AAGTAGT--C------CTTCAGGAATTTT--G--CAGTTC-A-TTA-ACTATTTC--AGTAAGCTATGATCTGTTTGAACCACA-AACTGCTTG----CCATACAGAGAGATAATGCTTGTAATATTTGGTAA--AGTCGA-CAACTGCTAGTAGTTCCTTTCTTGTCTTGCAGTATTTTCTCTCAGCTTTTGATAATAATCTGC--TAGCATAAGC-AATG--AC---AC-GT-TCA---ACG----------GTG--ACAGCACT--ACACT--GATC-GCAGCATCATTCGCGTCTGTATCCAGTATGAA----TGATTGCGAA----AAATATGG-ATGCGCAAGAACTGGatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaacagggtaacctactcaacgcttcagcatttgcgtggtttttacctgatcgatgttcaatggtcatttcaaaattgcttgaagtctcgagccaacgtgaaagtagtccttcaggaattttgcagttcattaactatttcagtaagctatgatctgtttgaaccacaaactgcttgccatacagagagataatgcttgtaatatttggtaaagtcgacaactgctagtagttcctttcttgtcttgcagtattttctctcagcttttgataataatctgctagcataagcaatgacacgttcaacggtgacagcactacactgatcgcagcatcattcgcgtctgtatccagtatgaatgattgcgaaaaatatggatgcgcaagaactggcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|6 : tcttctctacccctaaatgaccggaagttctctcatcgtgatattgctccagtactgttcgtcgcctgcagtatagagttatttccttgagatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaTGTAGTCCAGGCTAATAAAATT-TG-CTCTTT----ATCTTCGCCAAGGTCTTCTTTACCCCTAAATGACCAGAATTTCTTTCATCGTG-ATATT-GTT-C-C-AGTACTGTTCGATGCTC--ACTATATGGAACAACCGCCTGCA---GTACTGAGTTA-TTTCCCT-GATATTTCTTCC-TC--CGAAACAACATATCCTGATTGAAAACT---AAAGAGTCCCACTGAGAACAGATAGCCTTGAcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|6 : tttT--TTA-CAGGGTAATC--TACTCAA-TGC-ATC--AG--CATTT--GTGTGGTT---TTTAC-CTGGTCGGTGTTCGA-T-----GGTCATTTCAA-AAT-TGCTTAAA-GTCTCAAACCAA--CGT-GCAAGTTGT--C-------CTTCGGGATTTTT-G--CAGTTC-A-TTA-ACCATTTC--AGTGAGCTGTGGCCTGTTCGAACCAAATAACTGCTTG----CCATACAGA----TAATGGTTGTAATATTTGGTAA--AGTAGG-CAACTGCTAAGAGTTCCTTCCTTGTTACGCAATATTTTCTCTCAGCATTTGATAATGTTCTGC--TAGCATAAGC-AATGACAC---GT-TCAACA---CCATTTTGATTCTGTG--A-AAG-CATTGCACC--GATC-GCAGCATCACTCcaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggcttttttacagggtaatctactcaatgcatcagcatttgtgtggtttttacctggtcggtgttcgatggtcatttcaaaattgcttaaagtctcaaaccaacgtgcaagttgtccttcgggatttttgcagttcattaaccatttcagtgagctgtggcctgttcgaaccaaataactgcttgccatacagataatggttgtaatatttggtaaagtaggcaactgctaagagttccttccttgttacgcaatattttctctcagcatttgataatgttctgctagcataagcaatgacacgttcaacaccattttgattctgtgaaagcattgcaccgatcgcagcatcactcatccagtat
gi|7 : ttttgtagtccaggctaataaaatttgctctttatcttcgccaaggtcttctttacccctaaatgaccagaatttctttcatcgtgatattgttccagtactgttcgatgctcactatatggaacaaccgcctgcagtactgagttatttccctgatatttcttcctccgaaacaacatatcctgattgaaaactaaagagtcccactgagaacagatagccttgacaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggctttGCTAGTGTTTTATTAAAGCGCTCTACCATTCCGTCTGACTTAGGATGATGCAGCTTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-AAACAAGCGACTCTCAAACTGAGTGCCTTTGGTTAGAATGAAT-TGC-ATA-----CGACACGCTAAATCGAGTAAGGATCTGTTCAACAAGTATatccagtat
gi|9 : tgttttggtcttcgtaaccttagacgatcaacatgaattaattacttggtatttaccacaaggcccacagtcaacttcatatagaggatctgttttcttattgattacagtctaaggacttctccaataactagtaaactttgggaaatggcctgctttccgctgcgaaaagaatacgtttgttaaatgcttgccattttaccttagcatcatggtaacgtttctgtctgcgcatttattggcctgtatgatgccttactgtactgtgcacttcttctaaacggacttttagctcccatatccacttcaatgctgaggtatatcactcacacttggtggcatttcatacataacgtctagaggtgtagcaacctctctaccaagcatgaatgagttcggggtgcaacctgtcgtctagtgctgtgctgaccagtaggccaccataacgtacggcaggtgaacatcccagtgtctttgatgttcatcaacgtaggtgctgagcattgttTTTG-GA-TAGGCAAT-GGTTTCCGTCCACTTGGTAAAATAGTCTGATA-ATTACTAAG-ATGTATCTGTT------T-TCTGTTGTAGGTAAT-CAC-C----AAGGATGT-CCAT-GCTA------CTCGTT---CACATTGGAAAACCGGC---TCCAACTATTTGTATTGGTGCGCGTTTTAGTTTT---GTTGA-----------TAC----TTGGCGCCTTGAGCAAACCATACAGCCTGCA-----ATGTATTGGCGTACATCTTTCTGCAGCCCAGGCCAGTAGTAA---GACTGTCTT---ATTTTGCTCAGGGTTTTTCTGATGCCTAAATGACCTG-CGGTTTCTGATCATGAGTATA-C-T-G-G-AGGAC-ATTCTACGCTG--ATTCATTGGAATCACTGCTT-TG---GTCTT----TATTTTTct
blockSeqs : C TA GCG C G C C T GTCAT A A C G G CC TG T G AA C T A TT T A TC AA T A A TGGG T G G C GTCATC T GTG A A A AAGT ACA C G GTTGTATTGGGTGATTTTCTTTT A T AAC G AGCCTGCAATGTATTGGCGTACATCTTT T T ATGCATTCTTCA GACACAG GCGC C C T AG T ATCATA A T CA GT A C C TTT T GAGT C T G ATA T TT A TT TGA T T T C T . . T . . ACA TT . T A . G A G . G . C TA CC A AA T AGAG . . . A AG . . TTCAAA CGTGGCT . A AG TGAA T CTGCC A AT T C NNNCC . A TC T C T CAAAT TCGT GAGA T AA A TG C T T T T GCTC T G C C TG A . AC ACGTTTAA GAT T ATA T AA T GACAGCGCCCAAACC C G . AC CCATCCT T . C A A G AG G C T
blockSeqs : . . CA G . T . . . T C C G G . GG . . T T A A . . G TC G G T . . T . T A . A . . A A A ATA A G GTTTCTCAGTGGACTAAGTT T A . A TACAATGTACAT T T ATGCATTCTTCA GCCAAGG AGAC C C T C T GGGCT A T . GT A C A . T T T G . GA A . A GG . . G . . . . . . . . CT G CGG . . . T T . . CTC GAAAAT . G . TGCA C NNNNN C NN T A TATT . C . C T T TGTG . . C GT T . . A A A A CTGG T G G A . G . . GTTCAA . T GAT G . T GCATTGCACCGATC G T . AT CGAA T . T C G T AA . . .
blockSeqs : . G A T T . . A . . . T A T . . G CT T A G . . T . C C . T . . C C A TGC G G AGTTTTGTTGATAC T G . C AGCTATTCTGA A A ATCTTTACGGA CTCAGGG CTCT G T A C A GCTCC T T . TG T G G . A G T C . T T . . . . . TT G AAG . . . T A . . G CAAAAT . N . CA N C T AT T N TGTC . C . T T T CAAA . . A AA G . . T G A G TTTT G T T T . G . . TTTTT . T ATT T . C CACTACACTGATC G A . . CGA . . C A . G G
blockSeqs : A . . . . T A . . . . T G T . . G . T G . G . . C A T CCA T . TC G A . T AATC A T TTTGCTCTTTA TGTTCA CTTT A A T G A GTTCC A C . GT C A C . C . . . AA T CAA . . . T T . . G CAAAAT . G . NN A C N AT N C GAGA . T . G A G GGTA . . C AA G . . C A G C TTTT T A T A . . . . ACGTT . . . T . . CG . A
blockSeqs : A . . . . C . . T . . T G C T . AGACTGTCTTA TGTTCA TCTG C A T G A CTGG T T . AT T T T . . AA T CAA . . . . T . . G ATGCA . A . G T . A A . C CATT . T . A T T CACA . . C GT G . . A A T C CTT T A . T
blockSeqs : C . CCTCTG AA T C C G A A T T A . CA A C C . . . CATT . . . T T T C . . G GT G . . T T T T . . .
blockSeqs : T G . . A . T G A . T C T . T . . . . . . . . . . T G
blockSeqCons : TTTGTGGTT*********************** GCAATTCGN************************ T** CAG* ** ** T** T*** G***** TA*** CTGCC**** C** CATT** GTTC****** CACGCCCGACC*******
originalCons : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-GAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATNCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCTN-TCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACCGGN---TNNAACTATCTGCATTGGNGCTCGTTTT-GTTNC---GTTGA--AAG---TTTTTC----CTGNTGCATTTGTCA---CANCCAG-CTACA-----A--------CGTACATCCGACTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGTTCTCTCGTCGTG-GTATT-G-T-C-T-AGNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNA---GTNTTG---TACCTTTNCT-G-TACTNC--CCATCGGCGATATAACATGTCC---TTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAGGGTNNCC--NACTCGAGTGC-ATC--AG--CATTT--GCGTGGTT--GCTTGC-CTGGTCGATGTTCAA-TCT---GGTCATTTCGNGAAT-TGCTTAAA-GTCTCGAACCAA--CG--G-AAGTCGT--CTG-CC-CCTCCGGGATTTTTTG--CAGTTCGA-TCA-ACCATCTT--AGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGA-CAACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATG--AC---NT-TC-TCA---CCATTTTGATTCTGTG--ATAAGACA--GCGCC--GATCGGCAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
finalCons : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-GAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATNCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCTN-TCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACCGGN---TNNAACTATCTGCATTGGNGCTCGTTTTTTTGTGGTT-----------------------CTGNTGCATTTGTCA---CANCCGCAATTCGN------------------------CTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGTTCTCTCGTCGTG-GTATT-G-T-C-T-AGNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNA---GTNTTG---TACCTTTNCT-G-TACTNC--CCATCGGCGATATAACATGTCC---TTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAGGGTNNCCT--ACTCAG-TGC-ATC--AG--CATTT--GCGTGGTT---CTTGC-CTGGTCGATGTTCAA-TG-----GTCATTTCGNGAAT-TGCTTAAA-GTCTCGAACCAA--CGTA---AGTCGTCTGCC----CCTCCGGGATTTTTTGC--AGTTCATT--A-ACCATCTT--AGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGA-CAACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATG--ACGTTC------CA---CCATTTTGATTCTGTG--ATAACACGCCCGACC-------GCAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TAAATGTCTTGCTATAATAGCAAATGAATTTTTCCAGCCCGCCTTGTACTTGCGAAAGTACGGCTCCCAAGCCAAGATTGGATTTATGGCGATCGAGTATAAATAGTCCTTATTCATCAGAATAAGTTTATTCATCAGAATAAGACAAAATAGGAGCGCTAGTTAAGGCTCTTATCAGCAACGTCACAATTTTCGTCCCACACAAACTTGACTGAAGATTAATTAAGTCGGTTTTGCAAAGGTCTAGCAATATCTGAAAATTTTGTATATAAATTACAAAAGCCTAAGAAACTCCTGACTTCCCTTGCGTTTTTAGGAATGGGCCATGTTTTGACCGATTCTAGTTTAGAAGGATCTGTAGCTATCCCATTTTCGCTTACAATATGTCCCAGATAGAGAACTTTTTGAAGAAGTAAGCATTTCTTGGGATTCATTTGCAAATTAGCTTCCCTAAGTCGTGTGAAGACTTGTTTTAAATTGGTTAAATGTTGACAAAATTGTAATGTCGTCTATGTAAACTC
Unaligned ( gi|10 ): TATGAGAGGCTCAAACGTCACTGGGGCATTACAAAGTCCAAATGGCATGACTTTAAAATTGTAAAGCCCTTTTCTGGCAAATGCGGTCTTCAGACGATCTTTTTCTGCTACTTCGACCTGGTACCCAACATTTCAATCTAATGTGGAAAAACTGCGCCTGATAATTGACCTAAGAGTCATCTATCCTCGGAAGAGGTATGCATCCTTACAGATGCCGTTGTTTAAGCTTCCTGTAGTTCAATGCAGAAACCTGGGTCGTTCCATCCTTTTTCTTAACCAACACAACTGGAGATGACCTGAGGCTGGACACTCTTCAATGATTCCCCTTCTCAGCATGTCGTCAACATGACGATCCGACTCTTCTGCATATGTTACGGGAGTCGTCTTGAGTGCGTTTATTGATTAGTGCGTACCAGTATATTATGGCGTGTTCTGTCATTTTAGTTTGACCAAGGT
Unaligned ( gi|15 ): CTTTTCAAAATCAGTCCTACGCCTCTGCAATAGCTAGTAAATTTTGGCGACTGTCCCGTTTTGGTTCGTGGAAAATAGACATACACCTCATAATTTACATTAAAGTTCCCTCAATTCAATTTTTGTCATGGTAATGCTTTTGTCTTACCACTGCATTTTGACGAACAATTTTGTGAGCTTGCTCAAGTCTATCTTGCAATTGTCACACCCATT
Unaligned ( gi|17 ): TAGGTAATGGTGAAAGTTTTTAATGGATTTTACAATAGCCAAAAGTTCACGACGGGTGACACAATAACGCCTTTCAGAAGCACTAAAGGTTTTACTATAGT
Unaligned ( gi|18 ): GAGTGCAGTCTGTATTCTCACGAAAACAAGGCCTGCGAGACAGTGCGTCCGCATTACTGTGCGAACGCCCCGCTCTATGTTCAACTATAAAATCATATG
Unaligned ( gi|21 ): TCTTAAATGTTTGCCAGTTTACTTATGCATCATGGTAACGTTTCCGCCTGCGCATTTCTTGGGCTGAATGATGCCTTACTGTACTGTG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1111 1 1 1 22222 11 11 11 1111 111111 111 1111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55555555555555555 1111 3333333 22222222 3333 11 11 222 1 1 1 22222 11 222 11 11 222 33333 1 1 11 22 111 111 11111 222 11 333333 5555555555555555555 111 11111 11111 1111 1111 1111 11 4444444444444444444 111 11 555555 1 2222 33333333 1 1
lowQualScore : 6 88 7777 1 6 2 3 3 55555 1 1 1 1 8 33 22 8 8 99 3 1 1 11 0 8 0 3 22 99 1 1 6 4444 3 6 3 9 999999 1 111 6 1 2 2222 333 0 1 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 0 8 66666666666666666 8888888 9999 1 0 0 4 6 55 3 5555555 5 1 1 66 111 1 3 1 1 44444444 6 1 2222 1 33 3 11 333 7 1 7 1 1 5 5 5 77777 88 111 88 88 1 1 000 1 1 1 33333 6 3 3 88 33 6 22 1 111 99 6 99 99 222 0 77777 6 0 000 55 00 444444 99 6 1 0 5555555555555555555 1 44 2 333 44444 6 5 66 1 5 3 88888 0000 0000 3 33 1 66 5 1 1 1 1 1111 1 5 0 3 1 11 3 8 5555555555555555555 1 000 1 9 11 222222 3 4 8 5 1 0 1111 44 33333333 3 0 6 1 6 1 99 3 6 0 7
lowQualScore : . .. .... . . . . . ..... . . . . . .. .. . . .. . . . .. . . . . .. .. . . . .... . . . . ...... . ... . . . .... ... . . ............................................................................................................................... . . . ................. ....... .... . . . . . .. . ....... . . . .. ... . . . . ........ . . .... . .. . .. ... . . . . . . . . ..... .. ... .. .. . . ... . . . ..... . . . .. .. . .. . ... .. . .. .. ... . ..... . . ... .. .. ...... .. . . . ................... . .. . ... ..... . . .. . . . ..... .... .... . .. . .. . . . . . .... . . . . . .. . . ................... . ... . . .. ...... . . . . . . .... .. ........ . . . . . . .. . . . .
lowQualScore : 7 33 3333 0 7 0 3 3 00000 0 0 0 0 8 88 88 0 0 00 8 4 4 00 8 0 8 2 88 00 4 0 7 2222 2 7 7 3 222222 0 777 7 0 2 7777 000 8 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 7 7 77777777777777777 6666666 6666 0 2 8 5 6 22 6 0000000 0 0 2 99 666 0 4 0 0 00000000 4 0 5555 0 88 2 22 333 3 0 3 0 0 5 5 5 00000 55 000 55 55 0 0 555 0 0 0 33333 7 3 3 33 88 7 00 5 777 22 7 22 22 777 7 77777 7 3 888 00 22 333333 22 7 3 8 2222222222222222222 0 44 9 777 33333 0 3 99 0 5 1 22222 6666 6666 4 99 4 99 0 0 2 0 0 7777 3 3 6 3 0 00 2 0 6666666666666666666 0 666 0 0 00 444444 2 6 0 0 4 2 2222 00 22222222 2 0 5 0 5 0 88 3 7 7 3
consensus : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-GAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATNCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCT-NTCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACCGGN---TNNAACTATCTGCATTGGNGCT----------C----GTT-------T---CTTTG-T----GG------T----------CC-TGNTGCATTTGTC-------ACANCCN---------GCA-----ATG--TC-G-----------ACTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGTTCTCTCGTCGTG-GTATT-G-T-C-TA-GNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNAGTNTTG---T---ACCTTTNCTG-T-ACTNC--CCATCGGCGATATAACATGTCC---TTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAGGGTNNCCTA---CT-NAGTGC-ATC--AG--CATTT--GCGTGGT-T---CTTGC-CTGGTCGATGTTCAA---TNGTCAT-TTCGNAAAT-TGC--TTAAA-GTCTCGAACCAACGTG-AAGTCGT--CTG-CC-CCTCCGGGATTTTTTG--CAGTT-----CATTAACCATCTT--AGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGA-CAACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATGACAC-GT---TTAACA---CCATTTTGATTCTGTGATA--ACA-C-GCACCGATCG-CAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
Reference ( family-4235 ) : GCTAGTGTTTTATTAAAGCGCTCTACCATACCGTCTGACTTAGGATGATACGGCGTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-GAACAANCGACTCTCAAACTGAGTGCCTCTGGTCAGAATGAAT-TGC-ATA-----CGGCACNCCNAATCGAGTAAGGACCTGTTCNACAATTATNCGTGCCACTGT--TTCGGCCTCCATGTTTTG-CA-TGGGAAA--GCTTTCTGTCCACTTGGAGAAGTAGTCTGATACA--ACTAAG-ATGTATCTATTGCCCCT-NTCCGTCGCGGGTAGTTCNC-C----AAGTATAT-CCGTCGCTA------TNCGTT---C-CATCGGAGCACCGGN---TNNAACTATCTGCATTGGNGCT----------C----GTT-------T---TTTTG-T----GG------T----------TC-TGNTGCATTTGTC-------ACANCC----------GCA-----AT---TC-G-----------NCTGNAGTCCAGGCCAGTAATAAT-CG-CTCTTTA---ATCTTCNNCACAGTCTTNNNCACNCCTAGATGACCAGACGTTCTCTCGTCGTG-GTATT-G-T-C-TA-GNACTGTTCGTCGCTC--ACTNTATGGAACNACCGCCTGNAGTNTTG---T---ACCTTTNCTG-T-ACTNC--CCATCGGCGATATAACATGTCC---TTGTCTACTTTCAAANGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATANCNGAGTAACTAGGCTTCCGTGCCAATCCATTACCCATGAAGATTTTTTACTAAACTTTAATTCACAGTGCCATCATTTTTTCTTGAAGGCTCTCCATGGACGATTTGATCCNAGCTCCCTNGCCTTAACGTTGTNGGAAACANACTGGNCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TGA-CAGGGTNNCCTA---CT-CAGTGC-ATC--AG--CATTT--GCGTGGT-T---CTTGC-CTGGTCGATGTTCAA---TGGTCAT-TTCGNGAAT-TGC--TTAAA-GTCTCGAACCAACGT--AAGTCGT--CTG-CC-CCTCCGGGATTTTTTG--CAGTT-----CATTAACCATCTT--AGNGAGCTGTGGTCTGTTCGGACCGNA-AACTGCTTG----CCATACAGG----TAATGCTTGNAATATTTGGTAA--AGTAGA-CAACTGCNAGAAGTTCCTTTCTNGTNACGCAGTACTTNCTCTCGGCTTTTGTTAANGNTCTGC--TAGCATAAGC-AATG--AC-GT---TC--CA---CCATTTTGATTCTGTGATA--ACA-C-GC-CCGACCG-CAGCGTCACTCGCGTCTGTATCCAGGATGAA----TGATTGCG-A----AAATCTGG-ATGCGCNAGAACTGGGGCTNTAGCAA-AGCCTCTCTTCGAGGTCCTGGAATGCCTGTTGACATTCCTCACTCCATAGC
gi|1 : GCTAGTGTTTTATTAAAGCGCTCTACCATACAGTCTGACTTAGGATGATACGACGTTGTGTGGGTCTTCTTGGTACCGAAAAG--CTTGCATACTTCA-CTAAACAAACGACTCTCAAACTGAGTGCCT-TGGTCAGAGTGAAT-TGC-ATA-----CGGCACTCCTAATCGAGTAAGGACCTGTTGAACAATTATCTTTGCCACTGT--CTCGGCTTCCATGTTTTC-TA-TGGGAAA--GCTTTCTGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAA-ATGTATCTATTGCCCTT-ATCCGTCATGGGCAGCTCTC-C----AAGTATAT-CGGTTGCTA------TGCGTT---C-CATCGGAGCACCGGT---TTGTACTATCTGCATTGGGGCTTCCTTTGCTAC----GTTGAAAACCT---TTTT---------------T----------CC-TGCTGCATTTGTC-------ACACCCAACTATATATGCACGGACAT---CC-G-----------ACTAAAGTCCTGGCCAGTAATAAC-C-----TTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGACGATCTGTTGCCGTG-GTACT-G-GGC-TA-AAACTGTATGCCGTTC--ACTTGATGGTACCACAGCCTGAAGCGTTG---T---ACCTTTGCTG-T--CTAC--CCATTGGCGATATAATATGCCC---TTGTCTACTTTCAAAAGCTCGAACTGAGACCACAAAGACTTAAGGACTCGTCCTTCACTACTGATAGCAAAGTAACTAGGCTTTCGTGCCAATCCATTACCCA-GAAGATTTTTTACTAAACTTTAATTT---GTGCCATCA--TTTTCTTGAAGGCTCTCCATGGACGATTTGATCCAAGCTCCCTTACCTTAACGTTGTCGGAAACATACTGGCCGAACACTCTATTACTCCCGAGTCCCTAGTTG-AATCC--ACATTGCTG-TGA-CAAGGTTTCCCGGACCT-GAGTGCAATCGAAGCACATTTTAGTGTTGT-TAAGCTTGCACTGGCCGATGTTCAACTCTTGCCA--TTCGT--ATATGC--TTCCGTGTCTCCAGCC-ACGG--AAGCCATGATTGACCACCTCCGGGGTCTTTTGGAAAATCTGAGGCAT--ACCAGCGT--AAAGAACTGTGGTCAGTGCGGACAGTA-AATTGTTTG----CCATACAAG----TAATGTTTAAAATACCGGGTAA--AATACA-CAACTGCAAGAAGTTCTTTTTTGGTTACGCAGTACTGGCGCTCTGCTTTTGTCAAAGTTCGGC--TGGCATATGCTACTG--GC-CTCTCTT--CG---CCATTTAACTTCTGAGATA--AGA-CAGCTCCTATCGACA-CGTTGCTGGCGTCTGTGTCCAGAATAAATTCTTGATTG--------AAATCTGGCATG-GCTAGCACTGGGGCTTTA-CAA-AGCCTCTCTTTGAGGTCCTGGAAAGCCTGTTGGCATTCCCCACTCCATAGC
gi|11 : A-TAGGGTAATCTA---TT-CGGTAC-ATC--AT--CATT---GCATGGT-T---TTTAC-TTGGTTGAAGTTCAA---TGGTCAT-TT-GAAAAT-TGC--TTAAA-GTATCACACCAAAGTGCAAGTTGT---------TCTTAGGGA-TATTTG--CAGTT-----TATTAACCATATTTCAGTAAGCTATGATC-AT---GAC---------ACTT-------------G----TAAT---------ATTTAGTAA--AGTAGG-CAATAGCTAATAGTTGTTTTCTTGTTATGAAGTA------------TTTTATT----CTCAAC--TAGCATAAAC-AATAACAC-GT---TTAACA---CCATTTTGATACTGTGA-A--ATA---------ACGG-CACCGTCACTCGTGTTTGTATCCAGGATAAA----TGACTGCG-A----AAATCTGG-ATGCGCAAAAACTGG---TGTAG
gi|12 : atgagactgcaatgtccaaagatttccTGCTCCATTATTGTGCGTGCTACTGT--TTCA-CCTCCATATCTTG-CAGTGGGAAC--GCTT-CTGTCCATTTTGTGAAATAATCGGACACT--AC-AAGTATGTGGCGATTATCTCT-GTCCGTCTCAGATAATTCACAT----AAA-ATGT-CGGTCGCTA------TTCTCT---C-CATAGGGGTACCAGA---Tttattagtgtataatgcaatgaactgaatgctcattggcaatctcctgtccacgtaaaatttctacccttttctgttaa
gi|13 : aattattTATAGTCAAGGTCAATAA-AATGCA-TTCTTCA----TCTTCTGTTCA--CTTT---ACCCCTAGATGACCAGACGTTCTCTCGTCATG-CTTTT-------TA-GAACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGtcttgcgcatagtacactattcacatagggaaatgtactgatgaatatccttttgaagatcaggccaatattacttttgcctgatgttgcctattgttttagtcacacccaagtgtcctg
gi|14 : GTAGTTCTC-C----TCGTATAT-CTGTAGCAA------TAAGTT---C-CATACGCGTACCAGAAGTTACAACT---TGCATCGGCGCC----------C----GTT-------T---GGTTG-TATTGGG------TGATTTTCTTTTC-TGAT--ATTTTTC-------ACAGCCT---------ACA-----ATG--TA-C-----------ATTATAGTCAAGGTCAATAA-AATGCA-TTCTTCA----TCTTCTGTTCA--CTTT---ACCCCTAGATGACCAGACGTTCTCTCGTCATG-CTTTT-------TA-GAACTGTTTGTCGCTC--ACTGTATGGAACAACCGCCTGttttcttcttccgaatcatatcctgattttaaaaaaaataaagtgtctcatcgtgaacagatgaccttgataaaattatttccacatggtataagttataaccgtataaagttctgcgaggatgtgggtttcacgtcatcagcaatcccctttatgatgagactgcaatgtcc
gi|16 : tatgtacacca-CCTCCGCGATTTTTTA---AGTT-----TGTCAACCAT-TT--AACGAGCAATGGTCCGTTTGTACTGTG-AATTTATTC----TCATAAAGA----TCGTGTTTAAAATGCTTTGTGA--AGTAAACCAACTACAAGAA---CTCTTCTAGTAACGCATTACTT--TTTTGACATTTTTTAGCGATCTG
gi|19 : tggACTGGAGCTTT-GCAA-AGCCTCTCTTTGAGATCCTGGAATGCCTGCTGACATTCCTCACTCCATAGC
gi|2 : cGCGAGTGTCTTTTTGAATCTTTCAACCATACCATCTGACTTAGGATGGTATGGTGTGGTCCGAGTTTTCTTTATAT--AAATGTACTTGCACATACCAGC-GAACAACTGACTCTCATATTGGGT-CCCCTGGTCTGCATGGATCTATTATAGTCATTGGGACACCAAAGCGTGTGATGACTTGTTTCACACTAATGCGTGCTACAGT--TGTTGCCTCCATGTTTTG-CA-CTGGAAA--GCACCCTGTCCATTTAGAAAAGTAATCTACGACA--ACTAAG-ATATATTTGTTGCCTCT-TTCTGTTGCGGGTAATTCGC-CTGGGATGTTTATGCCATCGGTAGTCATCTTCATTGTGC-CATCGGAACACCCGA---TATAGTCATCTTCATTGTAGCT----------CCCTTGTT-------T---CTCAG-T----GGACTAAGT----------TC-GGTTGCAATTATC-------ACAACC------------A-----AT------------------CTTGAAGCCCAGGCCAGTAGTA---C--CTCT------GTCT-------AATTTTGCGCACGCCAAGGTGTCCTGA-G--CACTTGTCGTG-GC-TC-A-T-CATAAGTGTTGTTCGTCTTTCCAACTTT--GGGAGTATGGCCTGCATTTTTT---TTTTACCTTTTCTG-GGACTTC--CCATCTTCGGTATAACATactgcactgcctttctccgttaacttggtc
gi|20 : tctggcgcagtatttcaaacggccccgatcaatagctagtcagcttcgacaagttgccaaattttctcgttgagaaaaacacatacactttatctcctttacctatcttttgccaatttagcttggcttcatggtaacgcttctgtctgcatttcgccatgaatatgaacagcattgtgtgcatcttgaagtctctacttcaatccccaggcccatcgtttttgaggaacttggtcgaggtcgcttggcatttggagtagccacctcttgaccaagagttaatgcattacgagtcttgtgttcagcagagagctacgtcatcatcaggcacgttaaatgcatagtcccgatgatgatcatcaacgtatgcacgcagcatgccgTC--AGTGAGCTGTGGTCTGTTCGAACCAAA-AACTGCTTG----CCATACAGA----TAATGCTTGTAATATTTGGTAA--AGTAGA-CAACTGCTAAGAGTTCCTTTC
gi|3 : T-----TCTCCA--CCCTGA-TGCAATTGTAACATTTCCCCTGAACAAGGTCTGCGA---CT-AAGTGC-GTC--TG--CATTA--TTGTGAC-A---CTTGC-CAGCCCGGTGTTGAA---TT-TCAAAGTCGTA----TGCAGCTAAA-ACCTCGAACCATCG----GGCCAT--CTG-CC-CTTCTGGA--CTTTTA--AAGTT-----GAGAAGCCATCTT--AGGGCTCCGTGGTCTGTTCTGACC-----ACTATATGTCGTCCATATAGG----TAATGATGAAAGTATTT--CAATGAGTTGA-CTATAGCCAGAAGCTCCCGTCTAGTGACGCAATAGCTCCTTTCGGGCTTTGTAAAGGTTCTACTGTAGTATGA---AATA--ACTTT---TT--CAGATCCATCTTGGATCTGGGATAAGACAGC-GC-CCAAACC-CA-CTAAACTGGCATCAGTATCCAAGATGAA----TG--TGCC-ATCCTCAATC-GG-ATATGACAAAATTGGGGCTGTAATAAGAGCAT-TTTTCAACG-CTTCAAATGACTGTTGACATTCTTCAGTCCAT
gi|4 : ctctttaTA-----CGGCACTCCCAATCGAGTAAGACCCT-TTCTACAATTATTT-TGCCACTGCCCTTCGGCTTCCATGTTTTTTCA-TGGGAAAAAGTTTT-TGTCCACTTGGAGTAGTAGTCTGATACA--ACTAAA-A-GTATCTATTGCCCTTAATCCATCATGGGCAGCTCTT-C----AAGTACAT-CTGTGGCTA------TGCGTT---C-CATCGGAGCACCAGT---CTGCACTATCTGCATTGGGGCT----------C----GTT-------T---C------------------T----------CC-TGTTGCATTTGTC-------ACACCCA---------GCT-----AT---TCTG-----------ACTGAAGTCATGGCCAGTAATAA------TCTTTACGGATCTTCGACACAGTCTTAGACACACCGAGGTGTCCAGATGATCTGTTGTCGTG-GTACTGG-G-C-TA-AAATTGTACGCCGTTC--TCTTGATGGTACCACAGCCTGAAGCTTTG---T---ATCTTTGCTG-T--TTAT--CCATTGGCGATATAATATGTCC---TTGTCTACTTTCAAATGCTCGAACTGAGACCACAAAGAC--AAGGACTCGTCCTTCACTACTGATACCTGAGTAACTAGGCTTCCA-GCC-ATCCATTACCCATGA-----TTTTACTAAATTT--ATTCACAGTGCCATCATTTTTTTTTGAAGGCTCTCCATGGACA--TTGATCCTAGCTCTTTAGCCTTAA---TGTGGGAAACAAACTGGGCGAACACTCT-----TCTCCAGTCCCTAG-TG-AATCC--ACATTGCT--TG--CAAGGTTTCCGA---CTAGAGTGC-ATC--AG--CATTT--GTGTGGTAG---CTTGC-CTGGACGATGTTCTATC-TCTTCAT-TTCGTGGCTCNNN--NNNNN-NNNNNNNNNNNNNNN--NNNNNNN--NNN-NN-NNNNNNNNNNNNNNNN--NNNNN-----NNCCAACCAGCGT--AAAGAACTGTGTTCAGTGCGGACGGTA-AATTGTTTG----CCATACAAG----TAGTGCTTAAAATACCTGGTAA--AATACA-CTACTGCAAGAGGTTCTTTTCTGATCACACAGTACTGGCGCTCTGCTTTCGTCAAtggaatttagttgacttctccgtcagtctatgtaagggcttagccttgtctgaataatgtaagatgaattttctgtagtaggatgttaatcctaagaagctcctgacttctttcgtagatcttgtgtgtcggccattctttgacagcctttattttgttgggatcagttgaaacacctgtctcactgactacatgtcccaaaaagagtacctctctctgacaaagttgaaattatgtcagactaagttttaggttagcctgaagtaatctatcaaaaaccatcttcaggttctgtatttgttctccaaacgtcttggaatgaacaataatgtcgtctaagtagactaaacagacgtcataagataatccatggagaactctctccatgagtcgctcaaatgtagctggggcattacaaagcccaaaagccatgacggtaaattgccaaagaccacc
gi|5 : TCTTCTCTACCCCTAAATGACCGGAAGTTCTCTCATCGTG-ATATT-GCT-C-CA-GTACTGTTCGTCGCCT--GCAGTATAGAGTTATTTCCTTGAG
gi|5 : A-CAGGGTAACCTA---CT-CAACGC-TTC--AG--CATTT--GCGTGGT-T---TTTAC-CTGATCGATGTTCAA---TGGTCAT-TTCAA-AAT-TGC--TTGAA-GTCTCGAGCCAACGTGAAAGTAGT--C------CTTCAGGAATTTT--G--CAGTT-----CATTAACTATTTC--AGTAAGCTATGATCTGTTTGAACCACA-AACTGCTTG----CCATACAGAGAGATAATGCTTGTAATATTTGGTAA--AGTCGA-CAACTGCTAGTAGTTCCTTTCTTGTCTTGCAGTATTTTCTCTCAGCTTTTGATAATAATCTGC--TAGCATAAGC-AATGACAC-GT---TC--AA---C------G-----GTGACA--GCA-CTACACTGATCG-CAGCATCATTCGCGTCTGTATCCAGTATGAA----TGATTGCGAA----AAATATGG-ATGCGCAAGAACTGGatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaacagggtaacctactcaacgcttcagcatttgcgtggtttttacctgatcgatgttcaatggtcatttcaaaattgcttgaagtctcgagccaacgtgaaagtagtccttcaggaattttgcagttcattaactatttcagtaagctatgatctgtttgaaccacaaactgcttgccatacagagagataatgcttgtaatatttggtaaagtcgacaactgctagtagttcctttcttgtcttgcagtattttctctcagcttttgataataatctgctagcataagcaatgacacgttcaacggtgacagcactacactgatcgcagcatcattcgcgtctgtatccagtatgaatgattgcgaaaaatatggatgcgcaagaactggcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|6 : tcttctctacccctaaatgaccggaagttctctcatcgtgatattgctccagtactgttcgtcgcctgcagtatagagttatttccttgagatggcattatcccactgagaacagataacctcaagacaaaattactctcgcctgataactccgaggattcaggtttcacgtcatcagcaatccactttaagatgagactgataccattgtccttttgttgcctatctttcaaaaatacgtcatcaggtgttgataatagtggctttgcgcttcttgttttaatcgtttgaccagcaacacaacaggcgtttcaTGTAGTCCAGGCTAATAAAATT-TG-CTCTTTA----TCTTCGCCAAGGTCTTCTTTACCCCTAAATGACCAGAATTTCTTTCATCGTG-ATATT-GTT-C-CA-GTACTGTTCGATGCTC--ACTATATGGAACAACCGCCTGCAGTACTGAGTT---A-TTTCCCTGAT-ATTTCTTCC-TC--CGAAACAACATATCCTGATTGAAAACT---AAAGAGTCCCACTGAGAACAGATAGCCTTGAcacctgctgttattagtgcatggcgcaatgaattgaatgctgattgacttctgtccactaaatttttttaccctcctctgtcaacctatgcattggattggctttcccagcaaagtttggaatgaaacgtaactgcgaagtccaaggaaactctttacatctgtcacgttgttggcactgaccgttttttgacgaccgaaatttttttttgcggaatctgttgtaactccattttcggatacta
gi|6 : tttT--TTA-CAGGGTAATCTA---CT-CAATGC-ATC--AG--CATTT--GTGTGGT-T---TTTAC-CTGGTCGGTGTTCGA---TGGTCAT-TTCAA-AAT-TGC--TTAAA-GTCTCAAACCAACGTGCAAGTTGT--C-------CTTCGGGATTTTT-G--CAGTT-----CATTAACCATTTC--AGTGAGCTGTGGCCTGTTCGAACCAAATAACTGCTTG----CCATACAGA----TAATGGTTGTAATATTTGGTAA--AGTAGG-CAACTGCTAAGAGTTCCTTCCTTGTTACGCAATATTTTCTCTCAGCATTTGATAATGTTCTGC--TAGCATAAGC-AATGACAC-GT---TCAACA---CCATTTTGATTCTGTGAAA--GCATT-GCACCGATCG-CAGCATCACTCcaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggcttttttacagggtaatctactcaatgcatcagcatttgtgtggtttttacctggtcggtgttcgatggtcatttcaaaattgcttaaagtctcaaaccaacgtgcaagttgtccttcgggatttttgcagttcattaaccatttcagtgagctgtggcctgttcgaaccaaataactgcttgccatacagataatggttgtaatatttggtaaagtaggcaactgctaagagttccttccttgttacgcaatattttctctcagcatttgataatgttctgctagcataagcaatgacacgttcaacaccattttgattctgtgaaagcattgcaccgatcgcagcatcactcatccagtat
gi|7 : ttttgtagtccaggctaataaaatttgctctttatcttcgccaaggtcttctttacccctaaatgaccagaatttctttcatcgtgatattgttccagtactgttcgatgctcactatatggaacaaccgcctgcagtactgagttatttccctgatatttcttcctccgaaacaacatatcctgattgaaaactaaagagtcccactgagaacagatagccttgacaaaattactctcgcctgataactgcgaggatgttggtttcacgtcatcagcaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaacaggctttGCTAGTGTTTTATTAAAGCGCTCTACCATTCCGTCTGACTTAGGATGATGCAGCTTTGTGCGGGTCTTCTTGATACCGAAAAG--CTTGCATACTTCA-C-AAACAAGCGACTCTCAAACTGAGTGCCTTTGGTTAGAATGAAT-TGC-ATA-----CGACACGCTAAATCGAGTAAGGATCTGTTCAACAAGTATatccagtat
gi|9 : tgttttggtcttcgtaaccttagacgatcaacatgaattaattacttggtatttaccacaaggcccacagtcaacttcatatagaggatctgttttcttattgattacagtctaaggacttctccaataactagtaaactttgggaaatggcctgctttccgctgcgaaaagaatacgtttgttaaatgcttgccattttaccttagcatcatggtaacgtttctgtctgcgcatttattggcctgtatgatgccttactgtactgtgcacttcttctaaacggacttttagctcccatatccacttcaatgctgaggtatatcactcacacttggtggcatttcatacataacgtctagaggtgtagcaacctctctaccaagcatgaatgagttcggggtgcaacctgtcgtctagtgctgtgctgaccagtaggccaccataacgtacggcaggtgaacatcccagtgtctttgatgttcatcaacgtaggtgctgagcattgttTTTG-GA-TAGGCAAT-GGTTTCCGTCCACTTGGTAAAATAGTCTGATA-ATTACTAAG-ATGTATCTGTT-------TTCTGTTGTAGGTAAT-CAC-C----AAGGATGT-CCAT-GCTA------CTCGTT---CACATTGGAAAACCGGC---TCCAACTATTTGTATTGGTGCG----------C----GTT-------TTAGTTTTGTT----GA------T----------ACTTGGCGCCTTGAGCAAACCATACAGCCT---------GCA-----ATGTATT-GGCGTACATCTTTCTGCAGCCCAGGCCAGTAGTAA---GACTGTCTT---ATTTTGCTCAGGGTTTTTCTGATGCCTAAATGACCTG-CGGTTTCTGATCATGAGTATA-C-T-G-GA-GGAC-ATTCTACGCTG--ATTCATTGGAATCACTGCTT-TGGTCTT----T---ATTTTTct
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TAAATGTCTTGCTATAATAGCAAATGAATTTTTCCAGCCCGCCTTGTACTTGCGAAAGTACGGCTCCCAAGCCAAGATTGGATTTATGGCGATCGAGTATAAATAGTCCTTATTCATCAGAATAAGTTTATTCATCAGAATAAGACAAAATAGGAGCGCTAGTTAAGGCTCTTATCAGCAACGTCACAATTTTCGTCCCACACAAACTTGACTGAAGATTAATTAAGTCGGTTTTGCAAAGGTCTAGCAATATCTGAAAATTTTGTATATAAATTACAAAAGCCTAAGAAACTCCTGACTTCCCTTGCGTTTTTAGGAATGGGCCATGTTTTGACCGATTCTAGTTTAGAAGGATCTGTAGCTATCCCATTTTCGCTTACAATATGTCCCAGATAGAGAACTTTTTGAAGAAGTAAGCATTTCTTGGGATTCATTTGCAAATTAGCTTCCCTAAGTCGTGTGAAGACTTGTTTTAAATTGGTTAAATGTTGACAAAATTGTAATGTCGTCTATGTAAACTC
Unaligned ( gi|10 ): TATGAGAGGCTCAAACGTCACTGGGGCATTACAAAGTCCAAATGGCATGACTTTAAAATTGTAAAGCCCTTTTCTGGCAAATGCGGTCTTCAGACGATCTTTTTCTGCTACTTCGACCTGGTACCCAACATTTCAATCTAATGTGGAAAAACTGCGCCTGATAATTGACCTAAGAGTCATCTATCCTCGGAAGAGGTATGCATCCTTACAGATGCCGTTGTTTAAGCTTCCTGTAGTTCAATGCAGAAACCTGGGTCGTTCCATCCTTTTTCTTAACCAACACAACTGGAGATGACCTGAGGCTGGACACTCTTCAATGATTCCCCTTCTCAGCATGTCGTCAACATGACGATCCGACTCTTCTGCATATGTTACGGGAGTCGTCTTGAGTGCGTTTATTGATTAGTGCGTACCAGTATATTATGGCGTGTTCTGTCATTTTAGTTTGACCAAGGT
Unaligned ( gi|15 ): CTTTTCAAAATCAGTCCTACGCCTCTGCAATAGCTAGTAAATTTTGGCGACTGTCCCGTTTTGGTTCGTGGAAAATAGACATACACCTCATAATTTACATTAAAGTTCCCTCAATTCAATTTTTGTCATGGTAATGCTTTTGTCTTACCACTGCATTTTGACGAACAATTTTGTGAGCTTGCTCAAGTCTATCTTGCAATTGTCACACCCATT
Unaligned ( gi|17 ): TAGGTAATGGTGAAAGTTTTTAATGGATTTTACAATAGCCAAAAGTTCACGACGGGTGACACAATAACGCCTTTCAGAAGCACTAAAGGTTTTACTATAGT
Unaligned ( gi|18 ): GAGTGCAGTCTGTATTCTCACGAAAACAAGGCCTGCGAGACAGTGCGTCCGCATTACTGTGCGAACGCCCCGCTCTATGTTCAACTATAAAATCATATG
Unaligned ( gi|21 ): TCTTAAATGTTTGCCAGTTTACTTATGCATCATGGTAACGTTTCCGCCTGCGCATTTCTTGGGCTGAATGATGCCTTACTGTACTGTG