lowQualScore : 11111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1 1 111111111 77777777777777777777777777777777777777777777 222222222 88888888888888888888888888888888888888888 2 1111 111 22222 1111 333333333333333333 11111 11 1111111 111111 1111111 999999999999999999999999999999999999999 1111111111 11 111111 6666666666666666666666666666666666666666666666666 111 11 111 2222222222222222 22222222222 1111111111111 1111 333 22 22 1 11 11 11111 11 1111 11111111 0000000000000000000000000000000000000000000000000000000 111 11 1111111 11111 111 22222 11 11 11 11 22222 2
lowQualScore : 4444 3 6 3 999999999 88888888888888888888888888888888888888888888 3 3 3 7 000000000 3 3 1 4 1 33333333333333333333333333333333333333333 0 0 2 0000 4 4 0 000 44444 4 2222 4 4 2 3 3 999999999999999999 555 11111 44 55 3 555 3 3 55 4 8888888 4 111111 55 4 1111111 0 666666666666666666666666666666666666666 44 44 4 4 8 0 888 4 66 8 44 4 66 9999 4 6666666666 4 11 4 4 4 1 0 4 4 66 0 777 4 6 666666 4 9999999999999999999999999999999999999999999999999 222 4 4 4 4 66 4 55 66 4 4 000 4 6666666666666666 33333333333 5555555555555 66 5555 7777 4 8 66 4 333 4 777 4 4 4 8 55 8 7777 4 66 555 66 55 0 7 0 4 2 1 66 00 4 4 4 4 4 99 6666 4 4 4 00000 4 4 11 99 55 1111 4 4 777 55555555 4444444444444444444444444444444444444444444444444444444 66 4 666 666 4 777 00 4444444 99999 4 555 8888 4 22222 00 4 4 99999999 55 4 4 11 88 33 666 55 4 4 4 55 4 0 4 0 55 4 6666 4 5 777 00 88888 1 8 777 66 77 5 1 1
lowQualScore : .... . . . ......... ............................................ . . . . ......... . . . . . ......................................... . . . .... . . . ... ..... . .... . . . . . .................. ... ..... .. .. . ... . . .. . ....... . ...... .. . ....... . ....................................... .. .. . . . . ... . .. . .. . .. .... . .......... . .. . . . . . . . .. . ... . . ...... . ................................................. ... . . . . .. . .. .. . . ... . ................ ........... ............. .. .... .... . . .. . ... . ... . . . . .. . .... . .. ... .. .. . . . . . . .. .. . . . . . .. .... . . . ..... . . .. .. .. .... . . ... ........ ....................................................... .. . ... ... . ... .. ....... ..... . ... .... . ..... .. . . ........ .. . . .. .. .. ... .. . . . .. . . . . .. . .... . . ... .. ..... . . ... .. .. . . .
lowQualScore : 2222 3 7 3 111111111 66666666666666666666666666666666666666666666 6 6 6 3 000000000 6 6 1 4 1 99999999999999999999999999999999999999999 2 8 0 9999 0 0 8 777 44444 0 4444 0 0 5 6 6 444444444444444444 888 22222 66 11 6 000 6 7 22 0 4444444 0 555555 55 0 5555555 2 999999999999999999999999999999999999999 88 77 4 4 9 2 222 4 11 9 66 4 11 4444 4 0000000000 4 99 4 4 4 1 9 4 4 11 8 888 4 4 333333 4 8888888888888888888888888888888888888888888888888 222 4 4 4 4 11 4 00 11 4 4 777 4 1111111111111111 22222222222 2222222222222 11 2222 0000 4 9 11 6 999 0 000 0 0 0 0 55 0 8888 0 55 555 55 00 9 3 8 0 3 1 11 66 4 4 5 0 0 00 1111 0 0 0 00000 0 0 99 55 55 4444 0 0 000 00000000 4444444444444444444444444444444444444444444444444444444 11 4 222 777 4 888 66 4444444 77777 4 999 5555 0 55555 55 0 0 11111111 55 0 0 00 66 66 444 99 0 0 0 55 0 9 0 8 55 0 1111 0 0 000 66 11111 8 9 888 99 99 7 7 9
consensus : CCCCCCTT----CTC-T-CTCTCTCTA-ATGA--T------TTT---------G-----A-------AAGAA----------------CATG-T-CT-AC-T-A-------CATGT-ATCATTT-AGCGTGTTTGCTCGC-TTCCTCT------CTCTCTCTCTCCTCTNNTCTCC--AACGATACG-TTTTC-G--A-TTTAG-GAAATG--TTA--C--AC-TT-T-GAAATT-AAA-TNAT-TT-CTTTA---A------CTC----G---A---T-TT--T-AAA-GAA-A-TATA-TTGGGTTTTGCA-CATACATG----TATCT-A------T--CA-TTTTGCG----C--GCCCCC------------CTCTCCCTCCTCTCTCTCCCCCTCTNCGATG-AT-AC-GTTT-TCAA-TTTAGGA-AAT-G--TT-ATG-A-CTTA--AA----AA-TT----A-----AATT-GTN-TCTTTA-GTAG-ATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------C-A---------G-----------AT-----A-TGG---A-TT-TACTG-A-TTG--TT-AT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTA-----CGT--AAATTGACTAACAATT-TTTTTTT--T--G-ATG-A--AAAC-AA-ATTA--TATTA-AG-A---AC-TTAG-A-ACTAA-ATG-AATA-ATTT--T-AA-A-CA-C-ACAC-ATACATA--TT-T-AAGTAA-ATATATACAT--ATA--C-T-ATGCA-ATTA-ATACA-TA--C-GTTT-TCTT-TG-AT-----TA-CCGT-CAG-TGTCGC--CA--TCG-T-AACA-TCG-TT---TCG-GA--A--TGCAGA----AAAT-AGG-A---GG--AAA------------TTTC--A-A----------TCAT--CC-TGTG--GAA---T-TT---T--AT-------TTTAG-N---T-TAA-G-AAA----TTT-TT-----ACN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-G-TT-TTTC--CA-GAT-GTTTT--TC-CCC--C-AAA-GTGGGGG---GTGC--GCATT-GT-ACACAAGT-GCGC---AC--AATAC--ACG-GGACTATACGG
Reference ( gi|3 ) : CCCCCCTT----CTC-T-CTCTCTCTA-ATGA--T------TTT---------G-----A-------AAGAA----------------CATG-T-CT-AC-T-G-------CATGT-ATCATTT-AGCGTGTCTGCTCGNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNAACGATACGATTTTC-G--A-TTTAG-GAAATG--CTA--C--AC-TT-T-GAAATT-GAA-TGAT-TT-CTTTA---A------CTC----G---A---T-TT--T-AAA-GAA-A-TATA-TTGGGTTTTGCA-CATACATG----TA-CT-A------T--CA-TTTTGCG----C--GCCCCC------------CNNNNNNNNNNNNNNNNNNNNNNNNNNGATG-AT-AC-GTTT-TCAA-TTTAGGA-AAT-G--TT-ATG-A-TTTA--AA----AA-TT----A-----AATT-GTC-TCTTTA-GTAG-ATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------C-A---------G-----------AT-----A-TGG---A-TT-TACTG-A-TTG--TT-AT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTA-----CAT--AAATTGACTAACAATT-TTTTTTT--T--G-ATG-A--AAAC-AA-ATTA--TATT--AG-A---AC-TTAG-A-ACTAA-AT--AATA-ATTT--T-AA-A-CA-C-ACACAATACATA--TT-T-AAGTAA-ATATATACAT--ATA--C-T-ATGTA-ATTA-ATACC-TA--C-GTTT-TCTT-TG-AT-----TA-CCGT-CAA-TGTCGT--CA--TCG-T-GACA-TTG-TT---TCG-GA--A--TGCAGA----AAAT-AGG-A---GG--AAA------------TTTC--A-A----------TCAT--CC-TGTG--GAA---T-TT---T--AT-------TTTAG-G---T-TAA-G-AAA----TTT-TT-----ACC-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-G-TT-TTTC--CA-GAT-GTTTT--TT-CCC--C-AAA-GTGGGGG---GTGC--GCATT-GTAACATAAGTGGCGC---AC--AATAC--ACG-GGACTATACGG
gi|14 : CCCCCCTT----CTCGT-CTCTCTCTACATTAGTT------TTT---------T-----ACCATATCAAGAAGTAAACGTTCGGTGCACATG-T-CT-ACCT-A-------CATGT-ATCATTT-AGCGT
gi|8 : ttgtgaatattttggattcttgaaagaaatcttataacaggtttcaacactgccgctttctccttctctcctcgtctcttctctctctctctctctcgtctattttttaataaagatataataatgacaggttacacatgccCCCCTTT----CT--T-CTCTCTCTA-ATGA--TTTTTGATTT---------G-----A-------AAGAA----------------CAAT-T-CT-AC-T-A-------CATGT-ATCAATT-AGTGTGTTTGtttttgtgc
gi|2 : CCCCTTT----CTC-T-TTCTCTC-A-ATTA--T------TTT---------GATTTGA-------AAGAA----------------C-TC-C-TT-AC-T-A-------AATG---TTATTT-AGTGTGTTTGCtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgatacgtttttcgatttaggaaatgctacactttgaaattgaatgatttactttactcggtttttaaagaaattatattgggttgcacatacattatctatcattttgcgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatacgttttcatttaggaaatgttttatatttaaaagttaaattgtcttctttagtagaatttggtaatgctttgaacaatatatactcattcgatacttgttaatgcagatatggaatttactgattgttatatagaggtacagacgcaataattagtaataaattgacttacaattgttttttttatgatgaaaaacaaaatatatttaagaaagactagaactaaatgaataattttaaacacacacatacatatttaagtaaataatacatatactatgcaattaatacatacgtttctttgattaccgtcaatgtcgtcatcgtaacattgtttcggaatgcagaaaataggagtgggaaaa
gi|1 : gCCCCCTT----CTCGT-CTCTCTCTACATTAGTT------TTT---------T-----ACCATATCAAGAAGTAAACGTTCGGTGCACATG-T-CT-ACCT-A-------CATGT-ATCATTT-AGCGTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|4 : CCCCTTTCTCCTC-T-CTCTCTCTA-ATGA--T------TTTTGATTTT--G-----A-------AAGAA----------------CATG-T-CT-AC-T-A-------CATGT-ATCATTTTAGCGTGTTTGCTC-------TCT------CTCTCTCTCTCATCTCATCTCTCGAACG-TACG--TTTC-G--A-TTTAG-GAAATG--C-A--C--CCATT-T-GAAATT-GAA-TGAT-T--CTTTA----------CTC----G---A---T-TT--TTAAA-GAA-A-TATAATTGGGTTT-GCA-CAT-CATG----TA-TTTA------T--CA-AATTGTG----C--GCCCCC------------CCCCCCCCTCTCTCTCTCTCTCTCTCTGATA-A---C-GTTTCTCAA-TTTAGGA-TAT-G--TT-A-G-A-TTTA--AA----A--TT----A-----A-TT-GTC-TCTTTA-GTAG-ATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGAT-CTTGTTTAATAAT-G----------------C-A---------G-----------AT-----ATTGG---A-TT-TACTG-AGTTG--TT-AT--C--GA-TAAGGTAA--CG-ACGTAAATA---A------T-----TAGTA-----CAT--AAATTGACTAA----T-TTTTTTT--T--GAATG-A--AAAC-AA-ATCA--TATTA-AG-A---AC-TTAG-A-ACTAA-ATG-AATA-ATTT--TAAA-A-CA---ACAC-ATACATA--TT-T-AAGTAA-AT-TATACAT--ATA--C-T-ATGCA-ATTA-ATACA-TA--C-GTTT-TCTT-TG-AT-----TA-CCGT-CAA-TGTCGTCCCA--TCG-TAAACA-TTG-TT---TCG-GA--A--TGCAGA----AAAT-AGG-----GA--AAA------------TCCA--A-A----------TCAT--CC-TGTG--GAAT--T-TT---T--ATTTTAGCCTTTAG-G---T-TAA-G-AA------TT-TT-----ACC-CTCAT-T-CT-TTAC---CATTT-TTTTT-T--TATG--CGCAC--AA---TACATAGGAACT-AG-G-TT-TTT---CA-GAT-GTTTT--TC-CCC--C--AA-GTTGGGG---GTGC--GCATT-GTAtttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctactacatgtatcatttagcgtcttcgtcctctctcttctcgctctctgttccccataacgattgttcaaatttagtatatgtttatggacttaaaaaattaaatttatatctttagagagtcttgtgatgtttttgaagcatatataatggccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|5 : T----CTC-TTCTCTCTCTA-ATGA--T------TTTTTTGATTTTG-----A-------AAGAA----------------CATG-T-CT-AC-T-A-------CATGT-ATCATTT-AGAGTG-CT-CTC-------------------------CTTCTCTCTCTTCTTAACGATACG--TTTC-G--A-TTTAG-AAAATG--TTA--CC-AC-TA-T-GAAATT-AAA-TGAT-TT-CTTTA----------CTC----G---A---T-TT--T-AAA-GAA-A-TATA-TTGGGTT--GCA-CATACATG----TATCT-A------T--CA-TTTTGCG----C--GCCTCT------------CTCTCTCTCTCT---------------GACA-AT-AT-GTTT--CAA-TTTAG-A-AAT-G--TT-ATG-A-TTTA--AA----AA-TTTTTAA-----AATT-GTT-TCTTTA-GTAG-ATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT---AAT-G----------------C-A---------G-----------AT-----A-TGG---A-TT-TACTG-A-TTG--TT-AT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTA-----CAT--AAATTGACTA-CAATT-TTTTTTT--T----ATG-A--AAAC-AA-AA-A--TAC----G-A---AC-TTAA-A-ACTAA-A-------------------A-CA-C-ACACA-TACATA--TT-C-AAGTAT-AAATATACATTTATA--C-T-ATGCA-ATTA-ATACA-TA--C--TTT-TCTT-TG-AT-----TA-CCGT-CAG-TGTCGC--CA--CCG-T-AAGA-TCG-TT---TTG-AA--T--TGCAGATA--AAAG-AGGCA---GG--AAAAATCCAATAAA-TTTT--A-T----------TCAT--CC-TGTG--TAA---T-TT---TC-AT-------TTTAGTA---T-AAA-A-AAA----TTT-TT-----ACA-CTCAT-T-CT-A--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-G-TT-TTTC--CA-GAT-GTTTT--TC-CCC--C-AAA-GTGGGGG---GTGC--GCACA-AT-ACACAAGT-GCGC---AC--AATAC--ATG-AGATTTTAC
gi|9 : tctcTGA--T------TTT---------G-----A-------AAGAA----------------AATGAT-CT-A--T-A-------CATGT-ATCATTT-AGCCTGTTTGTGCGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAT-C-ACTTTC-GAAA-TTTAATGAAATG--TTC--G--AC-TT-T--AAATT-GAA-TGAT-TT-TTTT----A------TTC----G---A---TATT--T-AAA-GAA-C-TATA-TTGG---TTGCA-CATACATGTAT-TA-CT-A------T--CA-TTTTGCA----C--GCNNNN------------NNNNNNNNNNNNNNNNNNNNNNNNNA--ATG-AT-AC-GTTT-TCAA--TGAGAG-AAT-G--TT-ATG-A-CTTA--AA----AA-TT----A-----AATT-GT--TCTTTA-GT-G-ATC-TTTGT--ATGCTTT-GAAG-C--ACATATACT---CATATC-ATAC-TG-TT--TAAT-G----------------C-AGCCTTAAACG-----------AT-------TGG---ATTT-TACTG-A-TTT--TT-ATC-C--GA-T-A-GTAC--AG-ACGTAAATA---A------------TAGT------------AATTGAC-AACAAAT-TTTTTTT--T--T-AT--A--AAAC-AATATTA--TATTA-AG-A---AC-TTAG-A-ACTAATATG-AATA-ATTTTAT-AA-A-AA-C-AAAC-ATACATA--TT-T-
gi|8 : GG--T------TTT---------T-----A-------AAGAA-----------------AT--T-AT-AT-T-GGGTTGCACATAC-ATTATCT-ATCAT-TTTGCGCGCNNNNNNNN------NNNNNNNNNNNNNNNNNNNNG----ATGATACG-TTTTC----A-TTTAG-GAAATGTTTTA--T--AT-TT-A-AAAGTT-AAA-TTGTCTT-CTTTA---G-------TA----G---A---A-TT--T---G-GTA-A-T--------GCTTTGAA-CA-ATATA----TA-C---------T--CA-TT
gi|7 : cccctttcttctctctctaatgatttttgatttgaaagaacaattctactacatgtatcaattagtgtgtttgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgatacgtttttcgatttaggaaatgctacactttgaaattgaatgatttactttactcA----------------CATG-TTCT-AC-TTA-------CATGTTATCATTT-AGCGTTTGTGCTCCTTTCTCTCT------CTCTCTCTCTCCT--------------GATACCGTTTTC-A--A--TTAG-TAAATG--TTA--TA-AC-TT-TAAAAATT-AAA-TTAT-AT-CTTTA---G-------TA----G---A---T-CT--T-cgatacttgttaatgcagatatggaatttactgattgttatatagaggtacagacgcaataattagtaataaattgacttacaattgttttttttatgatgaaaaacaaaatatatttaagaaagactagaactaaatgaataattttaaacacacacatacatatttaagtaaataatacatatactatgcaattaatacatacgtttctttgattaccgtcaatgtcgtcatcgtaacattgtttcggaatgcagaaaataggagtgggaaaa
gi|6 : tttaaaaattatctaaacaggcttacacatggccccctttcttcttccttctcattttgtttaaatatagaagaaaacgtcgagtggcA----------------CATG-T-CTTAC-T-A-------CATGT-ATCA-TT-AGCATTTGTGCTCTCTCTCTCTC------TCCTCTCTCTCT---------------GATACG-TTTTC-A--A-TTTAG-T-AATG--TTAATG--AC-TT-A-AAAATTAAAA-TTAT-AT-CTTTttgaatgcatctcattcaatacttgtttaattgcagccgttaaacgatatgagttactgattgttatcgataggtacgacgtaaataattagtatgtcagaattaccaatttttttttttaatgaagacaaaattatattaaagaacttagaactaaatgaatagattttaaagaccacacatacatatttttaataatatataatatactatgcagattaatacatacgtttctattgcattacccgtcattgccgtcatcgctaacaatgttttcgcgaatgcagatattccaatcatcctattggatatttttatgttagtttaagaatttttacctcattcttccatttttttgatgtgcacgaatacacaggactaaggttttttcagatgttttccccccaaagtggggggtgcgcattggccacacaagtgcgccctatacacgatactatacg
gi|1 : cttctctctctctttctctcattttttaaaagatatctataacgggtttacacatggtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcattttttaaatatagaagcaaaacattcggcATG-T-CT-AC-T-A-------CATGT-ATCATTT-AGC--GTCT--TCG---TCCTCT------CTCTTCTCGCTCTCTGTTCCCCATAACGAT----TGTTCAA--A-TTTAG-TATATGT-TTA--TGGAC-TTAA-AAAATT-AAATTTAT-AT-CTTTAGAGA------GTCTTGTG---ATGTT-TT--T-GAA-GCATA-TATA-ATGGgtatattacttgtgaatgtcttagccatatatactcattcaaacttgttaatgcagccgtttaaacaatatggatttactgattgttatctgaataggtacagacgtaaataattagtaatgtccagaaacaatttttgttaatgaaaacaaattaattattaagaacgttagaactaataataatcttaagacacaacacattacatattataaaataacattaaacatatacatatgcaattatatcatacgtttactatgattaccgtcattatcgtaacaatgtttcgtgaacatgcaagactatttccaaatcatcctatggacttttaatattttagagttttaagaaaatttgttacctctctttttccattttttttatatgcgcaccaaatacatagactaaggtttttccagtgttttactcccccaaagtggtggtgcgcattgtacatgagtgcgcacaatacacgggactatacgg
gi|8 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttACGATACGTTTTTC-G--A-TTTAG-GAAATG--CTA--C--AC-TT-T-GAAATT-GAA-TGAT-TTACTTT----A------CTC----G---GT--T-TT--T-AAA-GAA-ATTATA-TTGGG--TTGCA-CATACAT-----TATCT-A------T--CA-TTTTGCG----C--G---CN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNGATG-AT-AC-GTTT-TC-A-TTTAGGA-AAT-GTTTT-AT--A-TTTA--AA----AG-TT----A-----AATT-GTCTTCTTTA-GTAG-AAT-TTGGT-AATGCTTT-GAAC-A--ATATATACT---CAT-TCGATACTTG--T--TAAT-G----------------C-A---------G-----------AT-----A-TGGA--A-TT-TACTG-A-TTG--TT-AT--A--TA-G-AGGTAC--AG-ACGC-AATA---A------T-----TAGTA------AT--AAATTGACTTACAATTGTTTTTTTTAT--G-ATGAA--AAAC-AA-AATA--TATTTAAG-AAAGAC--TAG-A-ACTAA-ATG-AATA-ATTT--T-AA-A-CA-C-ACAC-ATACATA--TT-T-AAGTAA-ATA-ATACAT--ATA--C-T-ATGCA-ATTA-ATACA-TA--C-G-TT-TCTT-TG-AT-----TA-CCGT-CAA-TGTCGT--CA--TCG-T-AACA-TTG-TT---TCG-GA--A--TGCAGA----AAAT-AGG-AGTGGG--AAA------------ccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|2 : cccctttcttctctctctaatgatttttgatttgaaagaacaattctactacatgtatcaattagtgtgtttgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACGATTTTC-G--A-TTTAG-GAAATG--CTA--C--AA-TT-T-GAAATT-GAA-TGAT-TT-CTT-----A------CT-----G---A---T-TT-----AA-GAA-A-TATA-TTGGGGTTTGCA--ATAC-TG----TATCT-A------T--CATTTTTGTG----T--GCCTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NN-NNNN-NNNN-NNNNNGATGATAG--TT-TTC-A-TTTAGGAATCGTAA-TT----AAAATTAATT-GTC-TCTTTACGTAG-ATA--TTGTGAATGTTTT-GAAG-CGAATATATACT---CAT-TCG--ACTTG--T--TAATCG----------------C-A---------G-----------AT-------TGG---A-TT-TACTG-A-------T-ATC-C--GA-T-AGGTAC--AGTACGCAAATA---AATAGGCC-----TAGTA-----CAT---AAT---CT-ACAA-----TTTTT--T--G-ATG-----AAC-AA-TTTA--T-TA--AG-A---A--TTAGCA-AATAA-AT--A--A-ATTT--T-AA-A--A-C--CAC-CTACATA--TT-T--AGT-A-ATATATA-AT--ACA--C-T-ATGCA-ATTAGATAC---A--T-GTTC-T-TT-TG-AT-----TA-CCG--CAA-TGTT-T--CA--TCG-T-AACA-TTG--T---TCG-G---A--T-CAGA----AAATAAGG-A---GG--AAA------------ATTCCAA-A----------TCAT--CC-TGTG--GAAT--T-TT---T--AT-------TTTAG-G---T-T-----GAA----TTT-TT-----ACC-CTCAT-T-CT-T--C---C-----CTTTT-T--GATGACTGCAC--AA---TACAT-GG-A--AAG-G-TT-TTTC--CA-GA--G--TT--TC-CCC--C-AAA-GT-GGGG---ATGC--GCATT-GGTACATAAGCTGCGC---AC--AATAC--ACG-GGA-TCTACGa
gi|10 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaACG-TTTTC-A--AATTTAG-G-AATG--TTA--TG-AC-TT-A-AAAATT-AAA-TTGT-TT-CTTTA---GTAGGATCTT----GTGAA---TGTT--T-GAA-GCA-A-TATA-
gi|1 : ctctctcttcttccctaccgaataatggcaggtgtatactaatcgagaatatgtattacgacttaaagacagaatataattctgtttttattcgattttaaagacctatattgggttgcatcatacatgtatctactacattttgcacgctcttctctacgtcctctctctcctcttctctaatgcatgT-TT-TTTTA-----------------G---A---A-TTAAT-GAA-GAA-A-AA-G-TTCGGCT--GCA-CTTATGTC----TA-CT-ACATGTAT--CA-TTTAGCGTCTTC--GTCCTCT-----------CTCTTCTCGCTCTCTGTTCCCCATAACGAT---------TGT-TCAAATTTAGTA-TAT-G--TTTATGGA-CTTA--AA----AAATT----A-----AATTTATA-TCTTTA-G-AG-AGT-CTTGTGA-TGTTTTTGAAG-C--ATATATAATGGCCAT---AATACCTATGT--TTAT-GGCACGCGCAGCCGTAAC-AC--------G-----------AT-----A-TGGGTCA-TTGTACGGGA-CTGGTTT-ATTCC--GAGT-AGGTAGTGAG-AAGTAAATATATA------TCTCTATAGTAATTTTCGT--AGAT------ACAATT-TTTTTTT--TTAG-ATG-ACCAAAC-AACATTA--TCTTGAAG-A---AC-TAGA-A-ACTAATATGAAATAGATTT--T-AA-A-GA-C-ACACACTAAATA--TTGTGAAATAA-TTGTATACCA--GTAATC-T-ATGCA-ATTA-ATACA-TA----GTTC-TCGTATG-AT-----TA-CCGT-CA--------------TCG-T-AACAATTG-TT---TTG--A--A--TGCAGA-------T-A--------------------------TTCC--ACA----------TCATGCCT-TGTG--GAA---T-TT---T--AT-------TTTAA-T---T-TAATG-AAA----TTT-TTT----ACCTCTCAT-AACT-T--C---CA--TATTTTT-T--GATG--CGCAC--AA---TACATAGA-TCTAAG-G-TTATTTCTTCA-GAT-G-TTT--TT-CCC--C-AAA-GTGGGAG---GTGCCTGCAT-------ATACATTGCGCTTTACGGAATACGGACGTGGACTATAccattcatacttgtttaatgccagcttaacaatggatttactgattgtttatcgatgtacgagtaatatgtaattgatacatttttttttatgacaaaattattaagaaaattagatactaatgaataatataacaaacacatcatattaagtaaata
gi|10 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgtTTTT---A------TTC----G---A---T-TT--T-AAA-GAC-C-TATA-TTGGGTT--GCATCATACATG----TATCT-A------CTACA-TTTTGCA----C--GCTCTT------------CTCTACGTCCTCTCTCTCCTCTTCTCTAATGCATGAC-GTTT-TCAAATTTAGGA-A-T-G--TT-ATG-A-CTTA--AA----AA-TT----A-----AATT-GTT-TCTTTA-GTAGGATC-TT-GTGAATG-TTT-GAAG-C--A-ATATAC----CAT-TC-ATACTTGTTT---AAT-G----------------CCA---------G-----------CTTAACAA-TGG---A-TT-TACTG-A-TTG--TTTAT--C--GA-T---GTAC---G-A-GTAA----------------------TA-----TGT--AA-TTGAT--ACATTT-TTTTTT--------ATG-A--CA---AA-ATTA--T-TA--AGAA---AA-TTAG-ATACTAA-TG--AATA-ATAT-----A-A-CA-A-ACAC-AT-CATA---T-T-AAGTAA-ATAaacgac
gi|18 : ctctctcttcttccctaccgaataatggcaggtgtatactaatcgagaatatgtattacgacttaaagacagaatataattctgt----G---A---T-TT--T-AAAAGAA-T-TATA-TTGGGTTT--CA-TATACATGTATCTA-CT-A------T--CA-TTTTG
gi|7 : GTTCT--A-CTTACATG----T---T-A------T--CA-TTTAGCG----TTTGTGCTC------------CTTTCTCTCTCTCTCTCTCTCC-------TG-AT-ACCGTTT-TCAA-TT-AGTA-AAT-G--TT-ATA-ACTTTA--AA----AA-TT----A-----AATT-ATA-TCTTTA-GTAG-ATC-TTT-TGAATGC----------------AT-CT---CAT-TCAATACTTGTTT--AATT-G----------------C-A---------GCCGTTAAACG-AT-----A-TG----A-GT-TACTG-A-TTG--TT-AT--C--GA-T-AGGTAC---G-ACGTAAATA---A------T-----TAGTA-----TGTCAGAATT-ACCAAT--TT-TTTTTTT--T--A-ATG-A--AGACAAA-ATTA--TATTAAAG-A---AC-TTAG-A-ACTAA-ATG-AATAGATTT--T-AA-A-GACC-ACAC-ATACATATTTT-T-AA-T-A-ATATATA-AT--ATA--C-T-ATGCAGATTA-ATACA-TA--C-GTTT-CTAT-TGCAT-----TACCCGT-CAT-TGCCGT--CA--TCGCT-AACA-ATGTTT---TCGCGA--A--TGCAG-------AT---------------A------------TTCC--A-A----------TCAT--CC-TATT--GGATATT-TT---T--AT-------GTTAG-T---T-TAA-G--AA----TTT-TT-----A-C-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--TGCACG-AA---TACACAGG-ACTAAG-G-TT-TTTT--CA-GAT-GTTTT--CC-CCC--C-AAA-GTGGGGG---GTGC--GCATTGGCCACACAAGT-GCGC---CC--TATAC--ACG-ATACTATACG
gi|6 : tttaaaaattatctaaacaggcttacacatggccccctttcttcttccttctcattttgtttaaatatagaagaaaacgtcgagtggcacatTG-AT-AC-GTTT-TCAA-TTTAGT--AAT-G--TTAATG-A-CTTA--AA----AA-TTA---A-----AATT-ATA-TCTTT--GTAT-ATTACTTGTGAATGTCTT---AGCC--ATATATACT---CAT-TCAA-ACTTG--T--TAAT-G----------------C-A---------GCCGTTTAAACAAT-----A-TGG---A-TT-TACTG-A-TTG--TT-AT--CTGAA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTA------AT----GTCCAGAAACAA---TTTTTGT--T--A-ATG-A--AAAC-AA-ATTAATTATTA-AG-A---ACGTTAG-A-ACT-A-AT--AATA-ATCT--T-AAGA-CA-CAACACATTACATA--TTATAAAATAACAT-TAAACAT--ATA--CAT-ATGCA-ATT--ATATCATA--C-GTTT-ACTA-TG-AT-----TA-CCGT-CA-------T--TA--TCG-T-AACA-ATG-TT---TCGTGAACA--TGCA-A----GACT---------------A------------TTTCCAA-A----------TCAT--CC-TATG--GAC---T-TTTAAT--AT-------TTTAG-AGTTT-TAA-GAAAA----TTTGTT-----ACCTCTC-T-T-TT-T--C---CA--T-TTTTT-TTATATG--CGCACCAAA---TACATA-G-ACTAAG-G-TT-TTTC--CA-G-T-GTTTTACTC-CCC--C-AAA-GT-GGTG---GTGC--GCATT-GT-ACATGAGT-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|11 : cttctctctctctttctctcattttttaaaagatatctataacgggtttacacatggtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcattttttaaatatagaagcaaaacattcggcacatgtcttactacatgtatcattagcatttgtgctctctctctctctcctctctctc-A---AC-TTAG-A-ACTAA-ATG-AATA-ATTA--T-AA-AACA-C-ACACA-TACATA--TTCT-AAGTAA-ATATATACAT--GTA--C-TTATGCA-ATTA-ATACA-TA--C-CTTTCTTTT-TG-AT-----TA-CCGT-CAG-TGTCGC--CA--TCG-T-AATA-TCG-TT---TCG-AA--T--TGCAGAT---AAAG-AGC-A---GG--AAAAAATCCAATAAATTTT--A-T----------TCAT--CCCTGTG--TAA---TCTT---T--AT-------TTTAG-T---T-TAA-----A----TTT-TTTTTTTACA-CTCAT-T-CT-T--C---CA--T-TTTTTGT--GTTG--CGCACCAAA---TACATAGG-ACTAAG-G-TT-TTTC--CAAGAT-GTTTT--TT-CCC--CCAAA-GTGGGGG---GTGC--GCACC-AACACAAAAGT-GCGC---AC--AATAC--ATG-AGATTTTACG
gi|13 : aCACCATGCGTA--TG-T-AAGTAA-ATATATACAT--GTAA-C-T-ATGCA-ATTA-ATACA-TA--CCGGTT-TCTT-TG-AT-----TC-CGGTGCGAGTGTCGCG-CAAATCGGT-CAGA-TTG-TTGGTTCG-AA--T--TGCAGGGGATAAAG-AGC-A---GG--AAAAATCCAATAAATTTTT--A-T----------TCAT--C--TGTG--TAA---T-TT---TTTAT-------TTTCC-G---TGTAA---AAA----TTT-TTGTTT-ACA-CTCAT-T-CT-T--TGCGCG--T-TTTTT-TTGGATGG-CGCAC--GAGAGTACATAGG---CAAGCG-TT-TTTC--GA-CATCGTTTT--TTGCCC--C-AAA-GTGGGCG---G
gi|12 : TA-ATAG-ATATA-TAATC-TTTT-TCCC-CG-ATGTGAATA-CCGT-CAG-TGTCGC--CA--GCG-C-AAGA-TCG-TT---TCG-GA--GATTGCAGAT---AAAG-AGT-A---GGGAAAA------------TGTCT-A-ACACATTGTTTTCAT--CC-TGTGTTATA---T-TT---T--AC-------TTTAG-----T-TAA-A-AAAAATTTTT-TT-----ACA-CTCATAT-CT--------CA--T-TTTTT-T--GATG--CGCAC--A----TACATAGG--CTAAG-GTTT-TTTT--CA-GCT-GTTTT--TC-CCC-----AA-GTGGGGGGCCGTGCG-GCATT-GT-ACACACGT-GCGC---GC--AATAg
gi|16 : gtaagtatacttcttaggtaggt-AAA----TTT-GC-----ACA-CCCAT-T-TTGT--C---AA--A-TTTG-----GATG--CGCAT--GA---TACATAGG-ACTAAA-G-TT-TTTT--TT-ATT-ATTAT--TT-GTTAAT-AAATGTTTGGG---ATGT--GTGTT-AT-ACACGAGT-GCGC---Agtggagactctta
gi|19 : TG--CGCAC--AA---TACACGGG-ACTA
gi|19 : agAGTG-CGC---AC--AATAC--ACG-GGACTATACGGtacggt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TTGTGAATTAAGTTGGAGGTCTTTGAAAGAAAATCTTATATACGTGGTTACAGCGTGCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTAAAAGATATCTATAACAGGTTACACATGCCCCCTTCTCTCCTTCTCATTTTTTTTAAATATAGAAGAAAACGT
Unaligned ( gi|17 ): TTAATGTAATATTTTCAATTATTTAGGAAAAGTAATATTTGGAAACTTTTTTTTATTAGATGTTGATAAAAAATATAATTGGACGCACATG
Alignments
lowQualScore : 1111 1 333333333333333333333333 4444444 6666666666666666 1 77777777777777777 777777777777777777777 22222222222222 111 111 1111111111 111 44444444444 11 1111 111111 5555555555555555555555555555555 1111111 11 1111111111111111 11111111111 11 111111 11111111 1 1111 11111 77777777777777777777777777777777777777777777777777777777777777777 111 11 1111111 1111 111 11111 1111 11 11
lowQualScore : 2222 1 5 999999999999999999999999 5555555 6666666666666666 5 0 5 00000000000000000 7 222222222222222222222 22222222222222 888 5 66 5 000 5 5 888 3 66 0 5 888 333 4 4 4 4 4 4 4 0000000000 4 111 55 55 3 0 4 2 2 777 33333 55555555555 4 4 4 4 88 0 0 33 4 4 4 2222 4 4 4 4 4 4 4 4 55 777 4 4 0 111111 4 8888888888888888888888888888888 4444444 777 4 4 4 4 4 99 55 33 4 4 888 4 0 6666666666666666 4 66666666666 2 00 3 0 55 555555 55 4 22222222 8 4 3 66666 3 7 2 3 7 3 55 3 99 0 3 6 3333 55 1 55 99 4 4 3 3 3 5555 3 3 3 99999 3 3 3 4 9999 55 7 3 3 1 666 3 7 33333 55 77777777777777777777777777777777777777777777777777777777777777777 99 55 4 111 777 33 3333333 4 2222 333 55555 3 1111 3 88 3 3 66666666 55 3 3 00 88 33 666 55 3 3 88 3 3 3 55 3 55 3 3 666 55 4 777777 66 4 4 777 66 66 5 0 0
lowQualScore : .... . . ........................ ....... ................ . . . ................. . ..................... .............. ... . .. . ... . . ... . .. . . ... ... . . . . . . . .......... . ... .. .. . . . . . ... ..... ........... . . . . .. . . .. . . . .... . . . . . . . . .. ... . . . ...... . ............................... ....... ... . . . . . .. .. .. . . ... . . ................ . ........... . .. . . .. ...... .. . ........ . . . ..... . . . . . . .. . .. . . . .... .. . .. .. . . . . . .... . . . ..... . . . . .... .. . . . . ... . . ..... .. ................................................................. .. .. . ... ... .. ....... . .... ... ..... . .... . .. . . ........ .. . . .. .. .. ... .. . . .. . . . .. . .. . . ... .. . ...... .. . . ... .. .. . . .
lowQualScore : 1111 4 7 222222222222222222222222 0000000 2222222222222222 0 0 0 00000000000000000 3 111111111111111111111 99999999999999 888 0 99 0 999 0 0 888 5 00 4 0 888 000 4 4 4 4 4 4 4 9999999999 0 444 00 00 6 2 0 5 0 888 44444 66666666666 0 0 0 0 88 8 8 55 0 0 0 5555 0 9 0 0 0 0 0 0 55 000 0 8 8 111111 0 0000000000000000000000000000000 8888888 000 0 0 0 0 0 55 55 55 0 0 777 0 8 8888888888888888 0 44444444444 5 44 2 9 55 000000 55 0 44444444 0 0 6 88888 6 3 8 6 3 6 00 6 55 0 3 7 5555 99 3 55 55 0 0 6 6 6 5555 6 6 6 11111 6 6 6 9 0000 00 3 6 6 6 444 6 3 99999 00 77777777777777777777777777777777777777777777777777777777777777777 55 55 0 000 000 55 0000000 0 0000 333 55555 6 4444 6 22 6 6 55555555 00 6 6 00 66 66 444 99 6 6 66 6 6 6 00 6 00 6 6 444 55 0 333333 11 0 0 000 11 99 0 2 5
consensus : CCCCCCTT----CTC-T-CTCTCTCTA-A-------TGA--T---------TTTGA----A--AAGAA----------------CATG-TCTAC-TACATGTATCA-TTTAGCGTGTTTGCTCGC---------TTC-CTCTCTCTCTCTCTCNTCTTNT---------CT-CC----AACG-----ATACG-T--TT---T-CGA--TTTAG-GAAATGC--TA-C-AC---TTTGAAATTGAATG-ATTT-CT---TTAACTCGA-T-TTT-AAA-GAAAT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCT-CTCTCTCTGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--AT-------TTTA-G---TTTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
Reference ( family-4044 ) : CCCCCCTT----CTC-T-CTCTCTCTA-A-------TGA--T---------TTTGA-------AAGAA----------------CATG-TCTAC-TACATGTATCA-TTTAGCGTGTTTGCTCGC---------TTC-CTCTCTCTCTCTCTCCTCTNNT---------CT-CC----AACG-----ATACG-T--TT---T-CGA--TTTAG-GAAATGT--TA-C-AC---TTTGAAATTAAATN-ATTT-CT---TTAACTCGA-T-TTT-AAA-GAAAT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTCCTCTCTCTCC-CCCTCTNCGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTNT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TCGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--AT-------TTTA-G---NTTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|1 : CCCCCTT----CTCGT-CTCTCTCTACA-------TTAGTT---------TTTTACCATATCAAGAAGTAAACGTTCGGTGCACATG-TCTACCTACATGTATCA-TTTAGCGTTTTT
gi|1 : TACATGTAT---C--------A-TTTAGCGTCTTCGTCCT---CTCTCTTCTCGCTCTCTGTTCCCCATAACG-AT-----TGT-TCAAATTTAGTATATGTTT-ATGGACTT-AAAAAATT----AAATTTATAT-CTTTA-G-A-GAGT-CTTGTGA-TGTTTTTGAAG-C--ATATATAATGGCCAT---AATACCTATGT--TTAT-GGCACGCGCAGCCGTAACACG-----------AT-----A-TGGGTCA-TTGT-ACGGGA-CTGGTTTATTCC--GAGT-AGGTAGTGAG-AAGTAAATATATA------TCTCTATAGT-AATTTTCGT--AGAT------ACAATT--TTTTTTT-TTAG-ATGACCAAA-CAACA-TTA--TCTTGAA-G-AA---C-TAGAA-ACTAATATGAAATAGA-TTT--TAA-A-GAC-ACAC-ACTAAATATTGTG-AAATAA-TTGTATACC--AGTAATC-T-ATGCA-ATTA-ATA-CATA----GTTC-TCGTATG-AT-----TACC-GT-C-A--------------TCG-T-AACAATTGTT---T-TG--A--A--TGCAG--A-------TA-------------------------------------TTCC--ACA----------TCATGCCTTGTG--GAA-T---TT---T--AT-------TTTA-A---TTTAATG-AAA-----TTT-TTT---A-CCTCTCAT-AACT-T--C---CA--TATTTTT-T--GATG--CGCAC--AA---TACATAGA-TCTAAG-GTTATTTCTTC-AGAT-G-TTTT--T--CCC--CAAA-GTGGGAGG---TGCCTG-CA-T-A--T-ACAT------T-GCGCTTTACGGAATACGGACGTGGACTATAtgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctactacatgtatcatttagcgtcttcgtcctctctcttctcgctctctgttccccataacgattgttcaaatttagtatatgtttatggacttaaaaaattaaatttatatctttagagagtcttgtgatgtttttgaagcatatataatggccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|10 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctacCTCTCTCTTCTTCC---------CTACCGAATAATG-----GCAGG-T--GTATAC-TAA--TCGAG-AATATGTATTA-CGAC---TTAAAGACAGAATATAATT-CTGTTTTTATTCGA-T-TTT-AAA-GACCT-AT-ATT-GG-----GTT--GCATCATACATGTAT---C--TACTACA-TTTTGCA-CGCTCTTCT---CTACGTCCTCTCTCTCC-TCTTCTCTAATGCATGAC-GTTT-TCAAATTTAGGAA-TGTT--ATG-ACTT-AAAAA-TT----AAATT-GTTT-CTTTA-GTAGGATC--TTGTGAATG-TTT-GAAG-C--A-ATATAC----CAT-TC-ATACTTG-TT--TAAT-GC---------------CA-G-----------CTTAACAA-TGG---A-TT-T-ACTG-A-TTGT-TTAT--C--GA-T---GTAC---G-A-GTAA----------------------T-A-----TGT---AATTGAT--AC-ATT--TTTTTTT------ATGA--CA---AA-A-T----TATT-AA-GAAA---A-TTAGATACT-A-ATGAA-TA-A-TAT----A-A-CAA-ACAC-A-T-CATA-T-T--AAGTAA-ATAaacgac
gi|11 : -AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTA--TAA-AACAC-ACAC-A-TACATATTCT--AAGTAA-ATATATACA--TGTA--C-TTATGCA-ATTA-ATA-CATA--C-CTTTCTTTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AATA-TCGTT---T-CG-AA--T--TGCAG--AT---AAAGA-GC-A---GGAAAAAATCCAATAAA------------TTTT--A-T----------TCATC-CCTGTG--TAA-TC--TT---T--AT-------TTTA-G---TTT-----AAATTTTTTTT-TT----A-CA-CTCAT-T-CT-T--C---CA--T-TTTTTGT--GTTG--CGCACCAAA---TACATAGG-ACTAAG-GTT-TTTC--CAAGAT-GTTTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CACC-A----ACACAAAAG-T-GCGC---AC--AATAC--ATG-AGATTTTACG
gi|12 : aA-ATAG-ATA-TATAATC-TTTT-TCCC-CG-ATGTGAATACC-GT-C-AGTGTCG--C-CA--GCG-C-AAGA-TCGTT---T-CG-GA--GATTGCAG--AT---AAAGA-GT-A---GGGA----------AAA------------TGTCT-A-ACACATTGTTTTCAT--CCTGTGTTATA-T---TT---T--AC-------TTTA-G---TTAAA-A-AAAATT--TTT-TT----A-CA-CTCATAT-CT--------CA--T-TTTTT-T--GATG--CGCAC--A----TACATAGG--CTAAG-GTT-TTTTT-C-AGCT-G-TTTT--TC-CCC----AA-GTGGGGGGCCGTGC--GGCATT-G--T-ACAC--ACG-T-GCGC---GC--AATA
gi|13 : gtaagtatacttcttaggtaggttC-AC-C-A-TGCGTATG-T--AAGTAA-ATATATACA--TGTAA-C-T-ATGCA-ATTA-ATA-CATA--CCGGTT-TCTT-TG-AT-----TCCG-GTGCGAGTGTCG--CGCAAATCGGT-CAGA-TTGTTGGTT-CG-AA--T--TGCAG--GGGATAAAGA-GC-A---GG------------AAAAATCCAATAAATTTTT--A-T----------TCAT--C-TGTG--TAA-T---TT---TTTAT-------TTTCCG---TGTAA---AAA-----TTT-TTGTTTA-CA-CTCAT-T-CT-T--TGCGCG--T-TTTTT-TTGGATGG-CGCAC--GAGAGTACATAGG---CAAGCGTT-TTTC--G-ACATCG-TTTT--TTGCCC--CAAA-GTGGGCGG---gtggagactctta
gi|14 : CCCCCCTT----CTCGT-CTCTCTCTACA-------TTAGTT---------TTTTACCATATCAAGAAGTAAACGTTCGGTGCACATG-TCTACCTACATGTATCA-TTTAGCGTTTTTg
gi|16 : ttgtgaatattttggattcttgaaagaaatcttataacaggtttcaacactgccgctttctccttctctcctcgtctcttctctctctctctctctcgtctattttttaataaagatataataatgacaggttacacatgcc-AAA-----TTT-GC----A-CA-CCCAT-T-TTGT--C---AA--A-TTTG-----GATG--CGCAT--GA---TACATAGG-ACTAAA-GTT-TTTT--T-TATT-A-TTAT--TT-GTTAATAAATGTTTGGGA---TGT--G-TGTT-A--T-ACAC--GAG-T-GCGC---Atgtgc
gi|18 : GA-T-TTT-AAAAGAATT-AT-ATT-GG-----GTTT--CA-TATACATGTATCTAC--TAT--CA-TTTTG
gi|19 : AG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|2 : CCCCTTT----CTC-T-TTCTCTC-A-A-------TTA--T---------TTTGATTTGA--AAGAA----------------C-TC-CTTAC-TAAATGT--TA-TTTAGTGTGTTTGCt
gi|2 : gC----AACG-----AT-------TT---T-CGA--TTTAG-GAAATGC--TA-C-AA---TTTGAAATTGAATG-ATTT-CT---T--ACT-GA-T-TT---AA-GAAAT-AT-ATT-GG-----GGTTTGCA--ATAC-TGTAT---C--TAT--CATTTTTGTG-TGCCTCCgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|2 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGATG-AT-A--GTTT-TCA--TTTAGGAA---TC--GTA-ATT---AAAA-TT----AA-TT-GTCT-CTTTACGTA-GATA-TT-GTGAATGTTTT-GAAG-CGAATATATACT---CAT-TCGA--CTTGTT----AATCG----------------CA-G-----------AT-------TGG---A-TT-T-ACTG-A-T------AT--CC-GA-T-AGGTAC--AGTACGCAAATA---AATAGGCC-----TAGT-A-----CAT--AA--T--CTA-CAATT--TTTT-------G-ATGA--A---CAA---TT---TATT-AA-G-AA-----TTAG----CAA-ATAAA-TA-AATTT--TAA-A--AC--CAC-C-TACATATT-T--A-GTAA--TATATA-A--TACA--C-T-ATGCA-ATTAGATA-CAT-----GTTC-T-TT-TG-AT-----TACC-G--C-AATGTT---T-CA--TCG-T-AACA-TTGTT-----CG-GA-----T-CAG--A----AAATAAGG-A---GG------------AAA------------ATTCCAA-A----------TCAT--CCTGTG--GAA-T---TT---TT-AT-------TTTA-G---GTTGA-----A-----TTT-TT----A-CC-CTCAT-T-CT-T--C---C-----CTTTT-T--GATGACTGCAC--AA---TACAT-GG-A--AAG-GTT-TTTC--C-AGA--G---TT--TC-CCC--CAAA-GT-GGGGA---TGC--G-CATTGG--T-ACAT--AAGCT-GCGC---AC--AATAC--ACG-GGA-TCTACGtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|3 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCCCCTT----CTC-T-CTCTCTCTA-A-------TGA--T---------TTTGA-------AAGAA----------------CATG-TCTAC-TGCATGTATCA-TTTAGCGTGTCTGCTCGN---------NNN-NNNNNNNNNNNNNNNNNNNNNN---------NN-NNNNN-AACG-----ATACGAT--TT---T-CGA--TTTAG-GAAATGC--TA-C-AC---TTTGAAATTGAATG-ATTT-CT---TTAACTCGA-T-TTT-AAA-GAAAT-AT-ATT-GG-----GTTTTGCA-CATACATGTA----C--TAT--CA-TTTTGCG-CGCCCCCCN---NNNNNNNNNNNNNNNNN-NNNNNNNNGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ATTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-A--G-AA---C-TTAGA-ACTAA-AT-AA-TA-A-TTT--TAA-A-CAC-ACACAA-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGTA-ATTA-ATA-CCTA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-GACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--AT-------TTTA-G---GTTAA-G-AAA-----TTT-TT----A-CC-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TT-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--TAACAT--AAG-TGGCGC---AC--AATAC--ACG-GGACTATACGG
gi|4 : CCCCTTTCTCCTC-T-CTCTCTCTA-ATGATTTTTGA--T---------TTTGA-------AAGAA----------------CATG-TCTAC-TACATGTATCATTTTAGCGTGTTTGCT----------------CTCTCTCTCTCTCTCATCTCAT---------CT-CTCG--AACG------TACG----TT---T-CGA--TTTAG-GAAATG------C-ACCCATTTGAAATTGAATG-A-TT-CT---TT-ACTCGATT-TTT-AAA-GAAAT-ATAATT-GG-----G-TTTGCA-CAT-CATGTAT---T--TAT--CA-AATTGTG-CGCCCCCCC---CCCCCCTCTCTCTCTCT-CTCTCTCTGATA----AC-GTTTCTCAA-TTTAGGATATGTT--A-G-ATTT--AAAA-TT-----AATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGAT-CTTGTTTAATAAT-G----------------CA-G-----------AT-----ATTGG---A-TT-T-ACTG-AGTTG--TTAT--C--GA-TAAGGTAA--CG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACTAA----T--TTTTTTT-T--GAATGA--AAA-CAA-A-TCA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A--ACAACAC-A-TACATATT-T--AAGTAA-AT-TATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCGTCC-CA--TCG-TAAACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-----GA------------AAA------------TCCA--A-A----------TCAT--CCTGTG--GAATT---TT---T--ATTTTAGCCTTTA-G---GTTAA-G-AA-------TT-TT----A-CC-CTCAT-T-CT-TTAC---CATTT-TTTTT-T--TATG--CGCAC--AA---TACATAGGAACT-AG-GTT-TTT---C-AGAT-G-TTTT--TC-CCC--C-AA-GTTGGGGG---TGC--G-CATT-G--T-A
gi|5 : T----CTC-TTCTCTCTCTA-A-------TGA--TTTTTTTGATTTTGA-------AAGAA----------------CATG-TCTAC-TACATGTATCA-TTTAGAGTG----------------------CTCTCCTTCTCTCTCTTCTT--------------------AACG-----ATACG----TT---T-CGA--TTTAG-AAAATGT--TACC-AC---TATGAAATTAAATG-ATTT-CT---TT-ACTCGA-T-TTT-AAA-GAAAT-AT-ATT-GG-----G--TTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCTCTCT---CT-----CTCTCTCT-----------GACA-AT-AT-G-TT-TCAA-TTTA-GAAATGTT--ATG-ATTT-AAAAA-TTTTTAAAATT-GTTT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTG-TT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACT-ACAATT--TTTTTTT-T----ATGA--AAA-CAA-A-------AAT-AC-G-AA---C-TTAAA-ACTA-------------------AA-A-CAC-ACAC-A-TACATATT-C--AAGTAT-AAATATACATTTATA--C-T-ATGCA-ATTA-ATA-CATA--C--TTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--CCG-T-AAGA-TCGTT---T-TG-AA--T--TGCAGATA----AAAGA-GGCA---GGAAAAATCCAAT-AAA------------TTTT--A-T----------TCAT--CCTGTG--TAA-T---TT---TC-AT-------TTTA-GT--ATAAA-A-AAA-----TTT-TT----A-CA-CTCAT-T-CT-A--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CACA-A--T-ACAC--AAG-T-GCGC---AC--AATAC--ATG-AGATTTTAC
gi|6 : tctcC---------TTCTCTCTCTCTTTCTCTCATTTTTTAAAAGATATCT-AT----AACGGGTTTACACA-TGGTC---T-NNN--NNNNN-NNNNNNN--NN-N-NN---NNNNNNNNNNNNTC-ATTT--T---TTAA----A-T-ATA-GAA-GCAAA-AC-ATTCGGCACATGTCTTAC----TACATGTAT---CATTAG--CA-TTT-GTG-C-TCTCTCT---CTCTCTCCTCTCTCTC------------TG-AT-AC-GTTT-TCAA-TTTAGT-AATGTTA-ATG-ACTT-AAAAA-TTA---AAATT-ATAT-CTTT--GTA-TATTACTTGTGAATGTCTT---AGCC--ATATATACT---CAT-TCAA-ACTTG--T--TAAT-G----------------CA-GCCGTTTAAACAAT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--CTGAA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTAA-----TGT--CCA--GA--AACAA----TTTTTGT-T--A-ATGA--AAA-CAA-A-TTAATTATT-AA-G-AA---CGTTAGA-ACT-A-AT-AA-TA-A-TCT--TAAGA-CACAACAC-ATTACATATTATA-AAATAACAT-TAAACA--TATA--CAT-ATGCA-ATT--ATATCATA--C-GTTT-ACTA-TG-AT-----TACC-GT-C-ATT---------A--TCG-T-AACA-ATGTT---T-CGTGAACA--TGCA---A----GACT-------------------------A------------TTTCCAA-A----------TCAT--CCTATG--GAC-T---TTTAAT--AT-------TTTA-GAGTTTTAA-GAAAA-----TTTGTT----ACCT-CTC-T-T-TT-T--C---CA--T-TTTTT-TTATATG--CGCACCAAA---TACATA-G-ACTAAG-GTT-TTTC--C-AG-T-G-TTTTACTC-CCC--CAAA-GT-GGTGG---TGC--G-CATT-G--T-ACAT--GAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|7 : -----GTTCT--A-CTTACATGT--------TAT--CA-TTTAGCG-T------TTGTGCTCCTTTCTCTCTCTCT-CTCTCTCC--TG-AT-ACCGTTT-TCAA-TT-AGTAAATGTT--ATA-ACTTTAAAAA-TT----AAATT-ATAT-CTTTA-GTA-GATC-TTT-TGAATGC----------------AT-CT---CAT-TCAATACTTGTTT--AATT-G----------------CA-GCCGTTAAACG-AT-----A-TG----A-GT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC---G-ACGTAAATA---A------T-----TAGT-A-----TGTCAGAATT-ACCAAT--TT--TTTTTTT-T--A-ATGA--AGA-CAA-AATTA--TATT-AAAG-AA---C-TTAGA-ACTAA-ATGAA-TAGA-TTT--TAA-A-GACCACAC-A-TACATATT-TTTAA-TAA--TATATA-A--TATA--C-T-ATGCAGATTA-ATA-CATA--C-GTTT-CTAT-TGCAT-----TACCCGT-C-ATTGCCG--T-CA--TCGCT-AACA-ATGTT---TTCGCGA--A--TGCAG--A-------TA-------------------------------------TTCC--A-A----------TCAT--CCTATT--GGA-TATTTT---T--AT-------GTTA-G---TTTAA-G-AA------TTT-TT----A-C--CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--TGCACG-AA---TACACAGG-ACTAAG-GTT-TTTT--C-AGAT-G-TTTT--CC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-GGCC-ACAC--AAG-T-GCGC---CC--TATAC--ACG-ATACTATACG
gi|8 : tttaaaaattatctaaacaggcttacacatggccccctttcttcttccttctcattttgtttaaatatagaagaaaacgtcgagtggcacatCCCCTTT----CT--T-CTCTCTCTA-A-------TGA--TTTTTGA---TTTGA-------AAGAA----------------CAAT-TCTAC-TACATGTATCA-ATTAGTGTGTTTG
gi|8 : ACG-----ATACG-T--TT---TTCGA--TTTAG-GAAATGC--TA-C-AC---TTTGAAATTGAATG-ATTTACT---TTA-CTCGG-T-TTTTAAA-GAAATTAT-ATT-GG-----GTT--GCA-CATACAT-TAT---C--TAT--CA-TTTTGCG-CGCNNNNNN---NNNNNNNNNNNNNNNNN-NNNNN---GATG-AT-AC-GTTT-TCA--TTTAGGAAATGTTTTAT--ATTT-AAAAG-TT----AAATT-GTCTTCTTTA-GTA-GAAT-TTGGT-AATGCTTT-GAAC-A--ATATATACT---CAT-TCGATACTTGTT----AAT-G----------------CA-G-----------AT-----A-TGG---AATT-T-ACTG-A-TTG--TTAT--A--TA-G-AGGTAC--AG-ACGCAA-TA---A------T-----TAGT-A------AT--AAATTGACTTACAATTGTTTTTTTTAT--G-ATGA--AAAACAA-A-ATA--TATTTAA-G-AAAGAC-T-AGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATA-ATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT--CTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-AGTGGG------------AAA------------tgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgatacgtttttcgatttaggaaatgctacactttgaaattgaatgatttactttactcggtttttaaagaaattatattgggttgcacatacattatctatcattttgcgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatacgttttcatttaggaaatgttttatatttaaaagttaaattgtcttctttagtagaatttggtaatgctttgaacaatatatactcattcgatacttgttaatgcagatatggaatttactgattgttatatagaggtacagacgcaataattagtaataaattgacttacaattgttttttttatgatgaaaaacaaaatatatttaagaaagactagaactaaatgaataattttaaacacacacatacatatttaagtaaataatacatatactatgcaattaatacatacgtttctttgattaccgtcaatgtcgtcatcgtaacattgtttcggaatgcagaaaataggagtgggaaaa
gi|9 : cccctttcttctctctctaatgatttttgatttgaaagaacaattctactacatgtatcaattagtgtgtttgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-------TGA--T---------TTTGA-------AAGAA----------------AATGATCTA--TACATGTATCA-TTTAGCCTGTTTGTGCGCATNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNN---------NN-NN----NATG-----AT-CA-C--TT---T-CGAAATTTAATGAAATGT--TC-G-AC---TTT-AAATTGAATG-ATTT-TT---TTA-TTCGA-TATTT-AAA-GAACT-AT-ATT-GG--------TTGCA-CATACATGTATTA-C--TAT--CA-TTTTGCA-CGCNNNNNN---NNNNNNNNNNNNNNNNN-NNNNNNA--ATG-AT-AC-GTTT-TCAA-TG-AGAGAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GT-T-CTTTA-GT--GATC-TTTGT--ATGCTTT-GAAG-C--ACATATACT---CATATC-ATACT-GTTT---AAT-G----------------CA-GCCTTAAACG--AT-------TGG---A-TT-TTACTG-A-TTT--TTAT--CC-GA-T-AG-TAC--AG-ACGTAAATA---A------T------AGT-A------------ATTGAC-AACAAAT--TTTTTTT-T--T-AT-A--AAA-CAATA-TTA--TATT-AA-G-AA---C-TTAGA-ACTAATATGAA-TA-A-TTTTATAA-A-AAC-AAAC-A-TACATATT-T--a
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTGTGAATTAAGTTGGAGGTCTTTGAAAGAAAATCTTATATACGTGGTTACAGCGTGCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTAAAAGATATCTATAACAGGTTACACATGCCCCCTTCTCTCCTTCTCATTTTTTTTAAATATAGAAGAAAACGT
Unaligned ( gi|17 ): TTAATGTAATATTTTCAATTATTTAGGAAAAGTAATATTTGGAAACTTTTTTTTATTAGATGTTGATAAAAAATATAATTGGACGCACATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1 1 222 33333333333333333333333333333333333333333333333333333 777777777777777777 66666666666666666666666 11111111111111 11111 11 111111111111 111 11 111 22222222222222 11 1111 111111 5555555555555555555555555555555 1111111 11 1111111111111111 11111111111 11 111111 11111111 1 1111 11111 77777777777777777777777777777777777777777777777777777777777777777 111 11 22222222222 111 11111 1111 11 11
lowQualScore : 0000 0 5 5 5 0 1 000 55555555555555555555555555555555555555555555555555555 4 8 4 333333333333333333 6 6 33333333333333333333333 99999999999999 00000 4 66 4 8888 55 4 4 0 4 1 66 4 777 999999999999 111 4 4 4 4 4 4 4 99999 0 00 4 111 55 55 3 0 4 88888888888888 2 4 4 0 888 4 4 4 4 88 0 0 33 4 4 4 2222 4 5 4 4 4 4 4 4 55 777 4 4 0 111111 4 8888888888888888888888888888888 4444444 777 4 4 4 4 4 99 55 33 4 4 888 4 0 6666666666666666 4 66666666666 2 00 3 0 55 555555 55 4 22222222 8 4 3 66666 3 7 2 3 7 3 55 3 99 0 3 6 3333 55 1 55 99 4 4 3 3 3 5555 3 3 3 99999 3 3 3 4 9999 55 7 3 3 666 3 7 33333 55 77777777777777777777777777777777777777777777777777777777777777777 99 55 4 111 777 33 4 11111111111 333 55555 3 1111 3 88 3 3 66666666 55 3 3 00 88 33 666 55 3 3 88 3 3 3 55 3 55 3 3 666 55 4 777777 66 4 4 777 66 66 5 0 0
lowQualScore : .... . . . . . . ... ..................................................... . . . .................. . . ....................... .............. ..... . .. . .... .. . . . . . .. . ... ............ ... . . . . . . . ..... . .. . ... .. .. . . . .............. . . . . ... . . . . .. . . .. . . . .... . . . . . . . . .. ... . . . ...... . ............................... ....... ... . . . . . .. .. .. . . ... . . ................ . ........... . .. . . .. ...... .. . ........ . . . ..... . . . . . . .. . .. . . . .... .. . .. .. . . . . . .... . . . ..... . . . . .... .. . . . ... . . ..... .. ................................................................. .. .. . ... ... .. . ........... ... ..... . .... . .. . . ........ .. . . .. .. .. ... .. . . .. . . . .. . .. . . ... .. . ...... .. . . ... .. .. . . .
lowQualScore : 6666 0 0 0 0 0 1 000 66666666666666666666666666666666666666666666666666666 4 9 4 999999999999999999 7 6 44444444444444444444444 77777777777777 33333 4 11 4 9999 00 4 4 3 4 1 11 4 888 555555555555 000 0 0 0 0 0 0 0 11111 7 33 0 444 00 00 6 2 0 11111111111111 4 4 4 3 444 0 0 0 0 88 8 8 55 0 0 0 5555 0 7 0 0 0 0 0 0 55 000 0 8 8 111111 0 0000000000000000000000000000000 8888888 000 0 0 0 0 0 55 55 55 0 0 777 0 8 8888888888888888 0 44444444444 5 44 2 9 55 000000 55 0 44444444 0 0 6 88888 6 3 8 6 3 6 00 6 55 0 3 7 5555 99 3 55 55 0 0 6 6 6 5555 6 6 6 11111 6 6 6 9 0000 00 3 6 6 444 6 3 99999 00 77777777777777777777777777777777777777777777777777777777777777777 55 55 0 000 000 55 0 33333333333 333 55555 6 4444 6 22 6 6 55555555 00 6 6 00 66 66 444 99 6 6 66 6 6 6 00 6 00 6 6 444 55 0 333333 11 0 0 000 11 99 0 2 5
consensus : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA---TTTT----------GATTT--A------AA--------GAA----------------CATG-TCTAC-TACATGTATCA-TTTAGCGTGTTTGCTCGC----------TC-CTCTCTC-TCTCTCTCNTCT--TCT---------CT-CC----AACG-----ATACG-T--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-TGAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCT-CTCT-CTC-TGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
Reference ( family-4044 ) : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA---TTTT----------GA-----A------AA--------GAA----------------CATG-TCTAC-TACATGTATCA-TTTAGCGTGTTTGCTCGC---------TTC-CTCTCTC-TCTCTCTCNTCT--TNT---------CT-CC----AACG-----ATACG-T--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-TGAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCT-CTCT-CTC-TGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|1 : CCCCCTT----CTCGT-CTC-TCTC-TACATTAGTTTTTTACCATATCAAGA-----AGTA---AACGTTCGGTGCA----------------CATG-TCTACCTACATGTATCA-TTTAGCGTTTTT
gi|1 : CTCCTCTT----CTC-T-CTCCTCTCGTC-ATCG---TTTTTTTTA-----GA-----ATTAATGAA--------GAAAAAGTTCGGCTGCACTTATG-TCTAC-TACATGTATCA-TTTAGCGTCTTCG---------------TC-CTCTCTCTTCTCGCTC-TCT--GTT---------CC-CCAT--AACG-----AT----T--GT---T-CAAA--TTTAG-TATATGTT--TATGGAC-TTAAAAAATTAAATTTAT--AT-CT---TTAGAGAGTCTTGTGATGTT-TTT-GAA-GCATAT-AT-AAT-GG-----tgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctactacatgtatcatttagcgtcttcgtcctctctcttctcgctctctgttccccataacgattgttcaaatttagtatatgtttatggacttaaaaaattaaatttatatctttagagagtcttgtgatgtttttgaagcatatataatggccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|1 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatTACATGTAT---C--------A-TTTAGCGTCTTCGTCCT---CTCTCTTCTCGCTCTCT-GTTC-CCCATAACG-AT-----TGT-TCAAATTTAGTATATGTTT-ATGGACTT-AAAAAATT----AAATTTATAT-CTTTA-G-A-GAGT-CTTGTGA-TGTTTTTGAAG-C--ATATATAATGGCCAT---AATACCTATGT--TTAT-GGCACGCGCAGCCGTAACACG-----------AT-----A-TGGGTCA-TTGT-ACGGGA-CTGGTTTATTCC--GAGT-AGGTAGTGAG-AAGTAAATATATA------TCTCTATAGT-AATTTTCGT--AGAT------ACAATT--TTTTTTT-TTAG-ATGACCAAA-CAACA-TTA--TCTTGAA-G-AA---C-TAGAA-ACTAATATGAAATAGA-TTT--TAA-A-GAC-ACAC-ACTAAATATTGTG-AAATAA-TTGTATACC--AGTAATC-T-ATGCA-ATTA-ATA-CATA----GTTC-TCGTATG-AT-----TACC-GT-C-A--------------TCG-T-AACAATTGTT---T-TG--A--A--TGCAG--A-------TA-------------------------------------TTCC--ACA----------TCATGCCTTGTG--GAA-T---TT---T--ATTTTA-A---T-------TTAATG-AAA-----TTT-TTT---A-CCTCTCAT-AACT-T--C---CA--TATTTTT-T--GATG--CGCAC--AA---TACATAGA-TCTAAG-GTTATTTCTTC-AGAT-G-TTTT--T--CCC--CAAA-GTGGGAGG---TGCCTG-CA-T-A--T-ACAT------T-GCGCTTTACGGAATACGGACGTGGACTATAccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|10 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctacCTCTCTCTTCT--TCC---------CTACCGAATAATG-----GCAGG-T--GTATAC-T-AA--TCGAG-AATATG-TATTACG-AC-TT-AAAGACAGAA-T-ATAATT-CTGTTTTT---ATTC----GA---T-TTT-AAA-GAC-CT-AT-ATT-GG-----GTT--GCATCATACATGTAT---C--TACTACA-TTTTGCA-CGCTCTTCT---CTACGTCCTCTCTCTC--CTCTTCTC-TAATGCATGAC-GTTT-TCAAATTTAGGAA-TGTT--ATG-ACTT-AAAAA-TT----AAATT-GTTT-CTTTA-GTAGGATC--TTGTGAATG-TTT-GAAG-C--A-ATATAC----CAT-TC-ATACTTG-TT--TAAT-GC---------------CA-G-----------CTTAACAA-TGG---A-TT-T-ACTG-A-TTGT-TTAT--C--GA-T---GTAC---G-A-GTAA----------------------T-A-----TGT---AATTGAT--AC-ATT--TTTTTTT------ATGA--CA---AA-A-T----TATT-AA-GAAA---A-TTAGATACT-A-ATGAA-TA-A-TAT----A-A-CAA-ACAC-A-T-CATA-T-T--AAGTAA-ATAaacgac
gi|11 : -AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTA--TAA-AACAC-ACAC-A-TACATATTCT--AAGTAA-ATATATACA--TGTA--C-TTATGCA-ATTA-ATA-CATA--C-CTTTCTTTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AATA-TCGTT---T-CG-AA--T--TGCAG--AT---AAAGA-GC-A---GGAAAAAATCCAATAAA------------TTTT--A-T----------TCATC-CCTGTG--TAA-TC--TT---T--ATTTTA-G---T-------TT-----AAATTTTTTTT-TT----A-CA-CTCAT-T-CT-T--C---CA--T-TTTTTGT--GTTG--CGCACCAAA---TACATAGG-ACTAAG-GTT-TTTC--CAAGAT-GTTTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CACC-A----ACACAAAAG-T-GCGC---AC--AATAC--ATG-AGATTTTACG
gi|12 : aA-ATAG-ATA-TATAATC-TTTT-TCCC-CG-ATGTGAATACC-GT-C-AGTGTCG--C-CA--GCG-C-AAGA-TCGTT---T-CG-GA--GATTGCAG--AT---AAAGA-GT-A---GGGA----------AAA------------TGTCT-A-ACACATTGTTTTCAT--CCTGTGTTATA-T---TT---T--ACTTTA-G---T-------TAAA-A-AAAATT--TTT-TT----A-CA-CTCATAT-CT--------CA--T-TTTTT-T--GATG--CGCAC--A----TACATAGG--CTAAG-GTT-TTTTT-C-AGCT-G-TTTT--TC-CCC----AA-GTGGGGGGCCGTGC--GGCATT-G--T-ACAC--ACG-T-GCGC---GC--AATA
gi|13 : gtaagtatacttcttaggtaggttC-AC-C-A-TGCGTATG-T--AAGTAA-ATATATACA--TGTAA-C-T-ATGCA-ATTA-ATA-CATA--CCGGTT-TCTT-TG-AT-----TCCG-GTGCGAGTGTCG--CGCAAATCGGT-CAGA-TTGTTGGTT-CG-AA--T--TGCAG--GGGATAAAGA-GC-A---GG------------AAAAATCCAATAAATTTTT--A-T----------TCAT--C-TGTG--TAA-T---TT---TTTATTTTCCG---T-------GTAA---AAA-----TTT-TTGTTTA-CA-CTCAT-T-CT-T--TGCGCG--T-TTTTT-TTGGATGG-CGCAC--GAGAGTACATAGG---CAAGCGTT-TTTC--G-ACATCG-TTTT--TTGCCC--CAAA-GTGGGCGG---gtggagactctta
gi|14 : CCCCCCTT----CTCGT-CTC-TCTC-TACATTAGTTTTTTACCATATCAAGA-----AGTA---AACGTTCGGTGCA----------------CATG-TCTACCTACATGTATCA-TTTAGCGTTTTTg
gi|16 : ttgtgaatattttggattcttgaaagaaatcttataacaggtttcaacactgccgctttctccttctctcctcgtctcttctctctctctctctctcgtctattttttaataaagatataataatgacaggttacacatgcc-AAA-----TTT-GC----A-CA-CCCAT-T-TTGT--C---AA--A-TTTG-----GATG--CGCAT--GA---TACATAGG-ACTAAA-GTT-TTTT--T-TATT-A-TTAT--TT-GTTAATAAATGTTTGGGA---TGT--G-TGTT-A--T-ACAC--GAG-T-GCGC---Atgtgc
gi|18 : ----GA---T-TTT-AAAAGAA-TT-AT-ATT-GG-----GTTT--CA-TATACATGTATCTAC--TAT--CA-TTTTG
gi|19 : AG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|2 : CCCCTTT----CTC-T-TTC-TCTC--A-ATTA---TTTT----------GATTTG-A------AA--------GAA----------------C-TC-CTTAC-TAAATGT--TA-TTTAGTGTGTTTGCt
gi|2 : gC----AACG-----AT-------TT---T-C-GA--TTTAG-GAAATG-C--TAC--AA-TT-TGAAATTGAA-TGAT--TT-CT---T-----ACT-----GA---T-TT---AA-GAA-AT-AT-ATT-GG-----GGTTTGCA--ATAC-TGTAT---C--TAT--CATTTTTGTG-TGCCTCCgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|2 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGATG-AT-A--GTTT-TCA--TTTAGGAA---TC--GTA-ATT---AAAA-TT----AA-TT-GTCT-CTTTACGTA-GATA-TT-GTGAATGTTTT-GAAG-CGAATATATACT---CAT-TCGA--CTTGTT----AATCG----------------CA-G-----------AT-------TGG---A-TT-T-ACTG-A-T------AT--CC-GA-T-AGGTAC--AGTACGCAAATA---AATAGGCC-----TAGT-A-----CAT--AA--T--CTA-CAATT--TTTT-------G-ATGA--A---CAA---TT---TATT-AA-G-AA-----TTAG----CAA-ATAAA-TA-AATTT--TAA-A--AC--CAC-C-TACATATT-T--A-GTAA--TATATA-A--TACA--C-T-ATGCA-ATTAGATA-CAT-----GTTC-T-TT-TG-AT-----TACC-G--C-AATGTT---T-CA--TCG-T-AACA-TTGTT-----CG-GA-----T-CAG--A----AAATAAGG-A---GG------------AAA------------ATTCCAA-A----------TCAT--CCTGTG--GAA-T---TT---TT-ATTTTA-G---G-------TTGA-----A-----TTT-TT----A-CC-CTCAT-T-CT-T--C---C-----CTTTT-T--GATGACTGCAC--AA---TACAT-GG-A--AAG-GTT-TTTC--C-AGA--G---TT--TC-CCC--CAAA-GT-GGGGA---TGC--G-CATTGG--T-ACAT--AAGCT-GCGC---AC--AATAC--ACG-GGA-TCTACGtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|3 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA---TTTT----------GA-----A------A---------GAA----------------CATG-TCTAC-TGCATGTATCA-TTTAGCGTGTCTGCTCGN---------NNN-NNNNNNN-NNNNNNNNNNNN--NNN---------NN-NNNNN-AACG-----ATACGAT--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-TGAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTA----C--TAT--CA-TTTTGCG-CGCCCCCCN---NNNNNNNNNNNNNNNNN-NNNN-NNN-NGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ATTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-A--G-AA---C-TTAGA-ACTAA-AT-AA-TA-A-TTT--TAA-A-CAC-ACACAA-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGTA-ATTA-ATA-CCTA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-GACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---G-------TTAA-G-AAA-----TTT-TT----A-CC-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TT-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--TAACAT--AAG-TGGCGC---AC--AATAC--ACG-GGACTATACGG
gi|4 : CCCCTTTCTCCTC-T-CTC-TCTC-TA-ATGAT--TTTT----------GATTTTGA------AA--------GAA----------------CATG-TCTAC-TACATGTATCATTTTAGCGTGTTTGCT----------------CTCTCTC-TCTCTCTCATCTCATCT---------CT-CG----AACG------TACG----TT---T-C-GA--TTTAG-GAAATG-C---AC--CCATT-TGAAATTGAA-TGA---TT-CT---TT----ACTC----GAT--T-TTT-AAA-GAA-AT-ATAATT-GG-----G-TTTGCA-CAT-CATGTAT---T--TAT--CA-AATTGTG-CGCCCCCCC---CCCCCCTCTCTCTCTCT-CTCT-CTC-TGATA----AC-GTTTCTCAA-TTTAGGATATGTT--A-G-ATTT--AAAA-TT-----AATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGAT-CTTGTTTAATAAT-G----------------CA-G-----------AT-----ATTGG---A-TT-T-ACTG-AGTTG--TTAT--C--GA-TAAGGTAA--CG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACTAA----T--TTTTTTT-T--GAATGA--AAA-CAA-A-TCA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A--ACAACAC-A-TACATATT-T--AAGTAA-AT-TATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCGTCC-CA--TCG-TAAACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-----GA------------AAA------------TCCA--A-A----------TCAT--CCTGTG--GAATT---TT---T--ATTTTA-G---CCTTTAGGTTAA-G-AA-------TT-TT----A-CC-CTCAT-T-CT-TTAC---CATTT-TTTTT-T--TATG--CGCAC--AA---TACATAGGAACT-AG-GTT-TTT---C-AGAT-G-TTTT--TC-CCC--C-AA-GTTGGGGG---TGC--G-CATT-G--T-A
gi|5 : T----CTC-TTCTC-TCTC-TA-ATGA---TTTTTTT-------GATTTTGA------AA--------GAA----------------CATG-TCTAC-TACATGTATCA-TTTAGAGTG----------------------CTCTCCT-TCTCTCTCTTCT--T--------------------AACG-----ATACG-T--TT-----C-GA--TTTAG-AAAATG-T--TACC-AC-TA-TGAAATTAAA-TGAT--TT-CT---TTA----CTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTT--GCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCC--------------TCTC----TCT-CTCT-CTC-TGACA-AT-AT-G-TT-TCAA-TTTA-GAAATGTT--ATG-ATTT-AAAAA-TTTTTAAAATT-GTTT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTG-TT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACT-ACAATT--TTTTTTT-T----ATGA--AAA-CAA-A-------AAT-AC-G-AA---C-TTAAA-ACTA-------------------AA-A-CAC-ACAC-A-TACATATT-C--AAGTAT-AAATATACATTTATA--C-T-ATGCA-ATTA-ATA-CATA--C--TTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--CCG-T-AAGA-TCGTT---T-TG-AA--T--TGCAGATA----AAAGA-GGCA---GGAAAAATCCAAT-AAA------------TTTT--A-T----------TCAT--CCTGTG--TAA-T---TT---TC-ATTTTA-G---TA------TAAA-A-AAA-----TTT-TT----A-CA-CTCAT-T-CT-A--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CACA-A--T-ACAC--AAG-T-GCGC---AC--AATAC--ATG-AGATTTTAC
gi|6 : tctcC---------TTCTCTCTCTC-TTTCTCTCATTT--TTTAAAAGATATCT-AT----AACGGGTTTACACA-TGGTC---T-N-NN--NNNNN-NNNNNN-N--NNN--NN-NN-NNNNNNNNNN-TCAT--TT--T---TTA---A--------A---T-ATA-GAA-GCA-AA-AC-ATTCGGCACATGTCTTAC----TACATGTAT---CATTAG--CA-TTT---G-TGCTC-------------TCTCTCTCTCTCCTCT-CTC-T-CTG-AT-AC-GTTT-TCAA-TTTAGT-AATGTTA-ATG-ACTT-AAAAA-TTA---AAATT-ATAT-CTTT--GTA-TATTACTTGTGAATGTCTT---AGCC--ATATATACT---CAT-TCAA-ACTTG--T--TAAT-G----------------CA-GCCGTTTAAACAAT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--CTGAA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTAA-----TGT--CCA--GA--AACAA----TTTTTGT-T--A-ATGA--AAA-CAA-A-TTAATTATT-AA-G-AA---CGTTAGA-ACT-A-AT-AA-TA-A-TCT--TAAGA-CACAACAC-ATTACATATTATA-AAATAACAT-TAAACA--TATA--CAT-ATGCA-ATT--ATATCATA--C-GTTT-ACTA-TG-AT-----TACC-GT-C-ATT---------A--TCG-T-AACA-ATGTT---T-CGTGAACA--TGCA---A----GACT-------------------------A------------TTTCCAA-A----------TCAT--CCTATG--GAC-T---TTTAAT--ATTTTA-GAGTT-------TTAA-GAAAA-----TTTGTT----ACCT-CTC-T-T-TT-T--C---CA--T-TTTTT-TTATATG--CGCACCAAA---TACATA-G-ACTAAG-GTT-TTTC--C-AG-T-G-TTTTACTC-CCC--CAAA-GT-GGTGG---TGC--G-CATT-G--T-ACAT--GAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|7 : -----GTTCT--A-CTTACATGT--------TAT--CA-TTTAGCG-T------TTGTGCTCCTTTCTCTCTCTCT-CTCT-CTC-C--TG-AT-ACCGTTT-TCAA-TT-AGTAAATGTT--ATA-ACTTTAAAAA-TT----AAATT-ATAT-CTTTA-GTA-GATC-TTT-TGAATGC----------------AT-CT---CAT-TCAATACTTGTTT--AATT-G----------------CA-GCCGTTAAACG-AT-----A-TG----A-GT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC---G-ACGTAAATA---A------T-----TAGT-A-----TGTCAGAATT-ACCAAT--TT--TTTTTTT-T--A-ATGA--AGA-CAA-AATTA--TATT-AAAG-AA---C-TTAGA-ACTAA-ATGAA-TAGA-TTT--TAA-A-GACCACAC-A-TACATATT-TTTAA-TAA--TATATA-A--TATA--C-T-ATGCAGATTA-ATA-CATA--C-GTTT-CTAT-TGCAT-----TACCCGT-C-ATTGCCG--T-CA--TCGCT-AACA-ATGTT---TTCGCGA--A--TGCAG--A-------TA-------------------------------------TTCC--A-A----------TCAT--CCTATT--GGA-TATTTT---T--ATGTTA-G---T-------TTAA-G-AA------TTT-TT----A-C--CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--TGCACG-AA---TACACAGG-ACTAAG-GTT-TTTT--C-AGAT-G-TTTT--CC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-GGCC-ACAC--AAG-T-GCGC---CC--TATAC--ACG-ATACTATACG
gi|8 : tttaaaaattatctaaacaggcttacacatggccccctttcttcttccttctcattttgtttaaatatagaagaaaacgtcgagtggcacatCCCCTTT----CT--T-CTC-TCTC-TA-ATGA---TTTTT---------GATTTG-A------AA--------GAA----------------CAAT-TCTAC-TACATGTATCA-ATTAGTGTGTTTG
gi|8 : ACG-----ATACG-T--TT---TTC-GA--TTTAG-GAAATG-C--TAC--AC-TT-TGAAATTGAA-TGAT--TTACT---TTA----CTC----GG---T-TTTTAAA-GAA-ATTAT-ATT-GG-----GTT--GCA-CATACAT-TAT---C--TAT--CA-TTTTGCG-CGCNNNNNN---NNNNNNNNNNNNNNNNN-NNNN-N----GATG-AT-AC-GTTT-TCA--TTTAGGAAATGTTTTAT--ATTT-AAAAG-TT----AAATT-GTCTTCTTTA-GTA-GAAT-TTGGT-AATGCTTT-GAAC-A--ATATATACT---CAT-TCGATACTTGTT----AAT-G----------------CA-G-----------AT-----A-TGG---AATT-T-ACTG-A-TTG--TTAT--A--TA-G-AGGTAC--AG-ACGCAA-TA---A------T-----TAGT-A------AT--AAATTGACTTACAATTGTTTTTTTTAT--G-ATGA--AAAACAA-A-ATA--TATTTAA-G-AAAGAC-T-AGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATA-ATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT--CTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-AGTGGG------------AAA------------tgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgatacgtttttcgatttaggaaatgctacactttgaaattgaatgatttactttactcggtttttaaagaaattatattgggttgcacatacattatctatcattttgcgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatacgttttcatttaggaaatgttttatatttaaaagttaaattgtcttctttagtagaatttggtaatgctttgaacaatatatactcattcgatacttgttaatgcagatatggaatttactgattgttatatagaggtacagacgcaataattagtaataaattgacttacaattgttttttttatgatgaaaaacaaaatatatttaagaaagactagaactaaatgaataattttaaacacacacatacatatttaagtaaataatacatatactatgcaattaatacatacgtttctttgattaccgtcaatgtcgtcatcgtaacattgtttcggaatgcagaaaataggagtgggaaaa
gi|9 : cccctttcttctctctctaatgatttttgatttgaaagaacaattctactacatgtatcaattagtgtgtttgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGA---TTTT----------GA-----A------A---------GAA----------------AATGATCTA--TACATGTATCA-TTTAGCCTGTTTGTGCGCATNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNN--NNN---------NN-NN----NATG-----AT-CA-C--TT---T-C-GAAATTTAATGAAATG-T--TCG--AC-TT-T-AAATTGAA-TGAT--TT-TT---TTA----TTC----GA---TATTT-AAA-GAA-CT-AT-ATT-GG--------TTGCA-CATACATGTATTA-C--TAT--CA-TTTTGCA-CGCNNNNNN---NNNNNNNNNNNNNNNNN-NNNN-NN---AATG-AT-AC-GTTT-TCAA-TG-AGAGAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GT-T-CTTTA-GT--GATC-TTTGT--ATGCTTT-GAAG-C--ACATATACT---CATATC-ATACT-GTTT---AAT-G----------------CA-GCCTTAAACG--AT-------TGG---A-TT-TTACTG-A-TTT--TTAT--CC-GA-T-AG-TAC--AG-ACGTAAATA---A------T------AGT-A------------ATTGAC-AACAAAT--TTTTTTT-T--T-AT-A--AAA-CAATA-TTA--TATT-AA-G-AA---C-TTAGA-ACTAATATGAA-TA-A-TTTTATAA-A-AAC-AAAC-A-TACATATT-T--a
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTGTGAATTAAGTTGGAGGTCTTTGAAAGAAAATCTTATATACGTGGTTACAGCGTGCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTAAAAGATATCTATAACAGGTTACACATGCCCCCTTCTCTCCTTCTCATTTTTTTTAAATATAGAAGAAAACGT
Unaligned ( gi|17 ): TTAATGTAATATTTTCAATTATTTAGGAAAAGTAATATTTGGAAACTTTTTTTTATTAGATGTTGATAAAAAATATAATTGGACGCACATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333 55555555555555555 444444444444444444444444444 111111111111111 11 222222222222 111 11 111 11111111111111 111 11 1111 111111 5555555555555555555555555555555 1111111 11 1111111111111111 11111111111 11 111111 11111111 1 1111 11111 77777777777777777777777777777777777777777777777777777777777777777 111 11 22222222222 111 11111 1111 11 11
lowQualScore : 9999 8 4 4 4 8 5 4 44444444444444444444444444444444444444444444444444444444444444444 4 4 8 4 4 4 99999999999999999 5 66 999999999999999999999999999 666666666666666 88888 4 55 4 8888 77 4 6666 4 2 55 4 777 111111111111 000 3 3 4 4 4 4 4 99999 0 00 4 111 55 55 3 4 33333333333333 2 4 0 111 4 4 4 4 88 0 0 33 4 4 4 2222 4 5 4 4 4 4 4 4 55 777 4 4 0 111111 4 8888888888888888888888888888888 4444444 777 4 4 4 4 4 99 55 33 4 4 888 4 0 6666666666666666 4 66666666666 2 00 3 0 55 555555 55 4 22222222 8 4 3 66666 3 7 2 3 7 3 55 3 99 0 3 6 3333 55 1 55 99 4 4 3 3 3 5555 3 3 3 99999 3 3 3 4 9999 55 7 3 3 666 3 7 33333 55 77777777777777777777777777777777777777777777777777777777777777777 99 55 4 111 777 33 4 11111111111 333 55555 3 1111 3 88 3 3 66666666 55 3 3 00 88 33 666 55 3 3 88 3 3 3 55 3 55 3 3 666 55 4 777777 66 4 4 777 66 66 5 0 0
lowQualScore : .... . . . . . . . ................................................................. . . . . . . ................. . .. ........................... ............... ..... . .. . .... .. . .... . . .. . ... ............ ... . . . . . . . ..... . .. . ... .. .. . . .............. . . . ... . . . . .. . . .. . . . .... . . . . . . . . .. ... . . . ...... . ............................... ....... ... . . . . . .. .. .. . . ... . . ................ . ........... . .. . . .. ...... .. . ........ . . . ..... . . . . . . .. . .. . . . .... .. . .. .. . . . . . .... . . . ..... . . . . .... .. . . . ... . . ..... .. ................................................................. .. .. . ... ... .. . ........... ... ..... . .... . .. . . ........ .. . . .. .. .. ... .. . . .. . . . .. . .. . . ... .. . ...... .. . . ... .. .. . . .
lowQualScore : 4444 9 4 4 4 9 0 0 55555555555555555555555555555555555555555555555555555555555555555 0 0 0 0 0 0 55555555555555555 7 99 444444444444444444444444444 111111111111111 44444 0 55 0 6666 55 0 1111 0 5 55 0 000 999999999999 000 6 6 0 0 0 0 0 11111 7 33 0 444 00 00 6 0 88888888888888 4 4 3 333 0 0 0 0 88 8 8 55 0 0 0 5555 0 7 0 0 0 0 0 0 55 000 0 8 8 111111 0 0000000000000000000000000000000 8888888 000 0 0 0 0 0 55 55 55 0 0 777 0 8 8888888888888888 0 44444444444 5 44 2 9 55 000000 55 0 44444444 0 0 6 88888 6 3 8 6 3 6 00 6 55 0 3 7 5555 99 3 55 55 0 0 6 6 6 5555 6 6 6 11111 6 6 6 9 0000 00 3 6 6 444 6 3 99999 00 77777777777777777777777777777777777777777777777777777777777777777 55 55 0 000 000 55 0 33333333333 333 55555 6 4444 6 22 6 6 55555555 00 6 6 00 66 66 444 99 6 6 66 6 6 6 00 6 00 6 6 444 55 0 333333 11 0 0 000 11 99 0 2 5
consensus : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GATTT--A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTGTTTGC-CGC----------TCCTCTCTC-TC--TCTCTCNTCT--TC---------TCT-CC----AACG-----ATA-CG-T--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCTCTCT-CTC-TGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
Reference ( family-4044 ) : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GATTT--A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTGTTTGCTCGC----------TCCTCTCTC-TC--TCTCTCNTCT--TC---------TCT-CC----AACG-----ATA-CG-T--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCTCTCT-CTC-TGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|1 : CCCCCTT----CTCGT-CTC-TCTC-TACATTA-GTTT-------TTT--ACCATATCA---A----------------GA-----AGTAAACGTTCGGTGCACATG-T-CTACCT-ACATGT-ATCA-TTTAGCGTTTTT
gi|1 : CTCCTCTT----CTC-T-CTCCTCTCGTC-ATCG-TTTTTTTTAGAATT--A-------ATGAA----------------GA-----AAAAGTTCGGCTGCACTTATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTCTTCG---------------TCCTCTCTCTTC--TCGCTC-TCT--GT---------TCC-CCAT--AACG-----AT-----T--GT---T-CAAA--TTTAG-TATATGTT--TATGGAC-TTAA-AAAATTAAATTTAT--AT-CT---TTAGAGAGTCTTGTGATGTT-TTT-GAA-GCATAT-AT-AAT-GG-----tgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctactacatgtatcatttagcgtcttcgtcctctctcttctcgctctctgttccccataacgattgttcaaatttagtatatgtttatggacttaaaaaattaaatttatatctttagagagtcttgtgatgtttttgaagcatatataatggccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|1 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatTACATGTAT---C--------A-TTTAGCGTCTTCGTCCT---CTCTCTTCTCGCTCTCTGTTC-CCCATAACG-AT-----TGT-TCAAATTTAGTATATGTTT-ATGGACTT-AAAAAATT----AAATTTATAT-CTTTA-G-A-GAGT-CTTGTGA-TGTTTTTGAAG-C--ATATATAATGGCCAT---AATACCTATGT--TTAT-GGCACGCGCAGCCGTAACACG-----------AT-----A-TGGGTCA-TTGT-ACGGGA-CTGGTTTATTCC--GAGT-AGGTAGTGAG-AAGTAAATATATA------TCTCTATAGT-AATTTTCGT--AGAT------ACAATT--TTTTTTT-TTAG-ATGACCAAA-CAACA-TTA--TCTTGAA-G-AA---C-TAGAA-ACTAATATGAAATAGA-TTT--TAA-A-GAC-ACAC-ACTAAATATTGTG-AAATAA-TTGTATACC--AGTAATC-T-ATGCA-ATTA-ATA-CATA----GTTC-TCGTATG-AT-----TACC-GT-C-A--------------TCG-T-AACAATTGTT---T-TG--A--A--TGCAG--A-------TA-------------------------------------TTCC--ACA----------TCATGCCTTGTG--GAA-T---TT---T--ATTTTA-A---T-------TTAATG-AAA-----TTT-TTT---A-CCTCTCAT-AACT-T--C---CA--TATTTTT-T--GATG--CGCAC--AA---TACATAGA-TCTAAG-GTTATTTCTTC-AGAT-G-TTTT--T--CCC--CAAA-GTGGGAGG---TGCCTG-CA-T-A--T-ACAT------T-GCGCTTTACGGAATACGGACGTGGACTATAccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|10 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctacC--TCTCTCTTCT--TC---------CCTACCGAATAATG-----GCA-GG-T--GTATAC-T-AA--TCGAG-AATATG-TATTACG-AC-TT-A-AAGACAGAA-T-ATAATT-CTGTTTTT---ATTC----GA---T-TTT-AAA-GAC-CT-AT-ATT-GG-----GTT--GCATCATACATGTAT---C--TACTACA-TTTTGCA-CGCTCTTCT---CTACGTCCTCTCTCTC-CTCTTCTC-TAATGCATGAC-GTTT-TCAAATTTAGGAA-TGTT--ATG-ACTT-AAAAA-TT----AAATT-GTTT-CTTTA-GTAGGATC--TTGTGAATG-TTT-GAAG-C--A-ATATAC----CAT-TC-ATACTTG-TT--TAAT-GC---------------CA-G-----------CTTAACAA-TGG---A-TT-T-ACTG-A-TTGT-TTAT--C--GA-T---GTAC---G-A-GTAA----------------------T-A-----TGT---AATTGAT--AC-ATT--TTTTTTT------ATGA--CA---AA-A-T----TATT-AA-GAAA---A-TTAGATACT-A-ATGAA-TA-A-TAT----A-A-CAA-ACAC-A-T-CATA-T-T--AAGTAA-ATAaacgac
gi|11 : -AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTA--TAA-AACAC-ACAC-A-TACATATTCT--AAGTAA-ATATATACA--TGTA--C-TTATGCA-ATTA-ATA-CATA--C-CTTTCTTTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AATA-TCGTT---T-CG-AA--T--TGCAG--AT---AAAGA-GC-A---GGAAAAAATCCAATAAA------------TTTT--A-T----------TCATC-CCTGTG--TAA-TC--TT---T--ATTTTA-G---T-------TT-----AAATTTTTTTT-TT----A-CA-CTCAT-T-CT-T--C---CA--T-TTTTTGT--GTTG--CGCACCAAA---TACATAGG-ACTAAG-GTT-TTTC--CAAGAT-GTTTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CACC-A----ACACAAAAG-T-GCGC---AC--AATAC--ATG-AGATTTTACG
gi|12 : aA-ATAG-ATA-TATAATC-TTTT-TCCC-CG-ATGTGAATACC-GT-C-AGTGTCG--C-CA--GCG-C-AAGA-TCGTT---T-CG-GA--GATTGCAG--AT---AAAGA-GT-A---GGGA----------AAA------------TGTCT-A-ACACATTGTTTTCAT--CCTGTGTTATA-T---TT---T--ACTTTA-G---T-------TAAA-A-AAAATT--TTT-TT----A-CA-CTCATAT-CT--------CA--T-TTTTT-T--GATG--CGCAC--A----TACATAGG--CTAAG-GTT-TTTTT-C-AGCT-G-TTTT--TC-CCC----AA-GTGGGGGGCCGTGC--GGCATT-G--T-ACAC--ACG-T-GCGC---GC--AATA
gi|13 : gtaagtatacttcttaggtaggttC-AC-C-A-TGCGTATG-T--AAGTAA-ATATATACA--TGTAA-C-T-ATGCA-ATTA-ATA-CATA--CCGGTT-TCTT-TG-AT-----TCCG-GTGCGAGTGTCG--CGCAAATCGGT-CAGA-TTGTTGGTT-CG-AA--T--TGCAG--GGGATAAAGA-GC-A---GG------------AAAAATCCAATAAATTTTT--A-T----------TCAT--C-TGTG--TAA-T---TT---TTTATTTTCCG---T-------GTAA---AAA-----TTT-TTGTTTA-CA-CTCAT-T-CT-T--TGCGCG--T-TTTTT-TTGGATGG-CGCAC--GAGAGTACATAGG---CAAGCGTT-TTTC--G-ACATCG-TTTT--TTGCCC--CAAA-GTGGGCGG---gtggagactctta
gi|14 : CCCCCCTT----CTCGT-CTC-TCTC-TACATTA-GTTT-------TTT--ACCATATCA---A----------------GA-----AGTAAACGTTCGGTGCACATG-T-CTACCT-ACATGT-ATCA-TTTAGCGTTTTTg
gi|16 : ttgtgaatattttggattcttgaaagaaatcttataacaggtttcaacactgccgctttctccttctctcctcgtctcttctctctctctctctctcgtctattttttaataaagatataataatgacaggttacacatgcc-AAA-----TTT-GC----A-CA-CCCAT-T-TTGT--C---AA--A-TTTG-----GATG--CGCAT--GA---TACATAGG-ACTAAA-GTT-TTTT--T-TATT-A-TTAT--TT-GTTAATAAATGTTTGGGA---TGT--G-TGTT-A--T-ACAC--GAG-T-GCGC---Atgtgc
gi|18 : ----GA---T-TTT-AAAAGAA-TT-AT-ATT-GG-----GTTT--CA-TATACATGTATCTAC--TAT--CA-TTTTG
gi|19 : AG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|2 : CCCCTTT----CTC-T-TTC-TCTC--A-ATTA-TTTT-----GATTTG-A-------A---A----------------GA-----A----------------C-TC-C-TTAC-T-AAATG---TTA-TTTAGTGTGTTTGCt
gi|2 : gC----AACG-----AT--------TT---T-C-GA--TTTAG-GAAATG-C--TAC--AA-TT-T-GAAATTGAA-TGAT--TT-CT---T-----ACT-----GA---T-TT---AA-GAA-AT-AT-ATT-GG-----GGTTTGCA--ATAC-TGTAT---C--TAT--CATTTTTGTG-TGCCTCCgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|2 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGATG-AT-A--GTTT-TCA--TTTAGGAA---TC--GTA-ATT---AAAA-TT----AA-TT-GTCT-CTTTACGTA-GATA-TT-GTGAATGTTTT-GAAG-CGAATATATACT---CAT-TCGA--CTTGTT----AATCG----------------CA-G-----------AT-------TGG---A-TT-T-ACTG-A-T------AT--CC-GA-T-AGGTAC--AGTACGCAAATA---AATAGGCC-----TAGT-A-----CAT--AA--T--CTA-CAATT--TTTT-------G-ATGA--A---CAA---TT---TATT-AA-G-AA-----TTAG----CAA-ATAAA-TA-AATTT--TAA-A--AC--CAC-C-TACATATT-T--A-GTAA--TATATA-A--TACA--C-T-ATGCA-ATTAGATA-CAT-----GTTC-T-TT-TG-AT-----TACC-G--C-AATGTT---T-CA--TCG-T-AACA-TTGTT-----CG-GA-----T-CAG--A----AAATAAGG-A---GG------------AAA------------ATTCCAA-A----------TCAT--CCTGTG--GAA-T---TT---TT-ATTTTA-G---G-------TTGA-----A-----TTT-TT----A-CC-CTCAT-T-CT-T--C---C-----CTTTT-T--GATGACTGCAC--AA---TACAT-GG-A--AAG-GTT-TTTC--C-AGA--G---TT--TC-CCC--CAAA-GT-GGGGA---TGC--G-CATTGG--T-ACAT--AAGCT-GCGC---AC--AATAC--ACG-GGA-TCTACGtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|3 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GA-------------A---A----------------GA-----A----------------CATG-T-CTAC-T-GCATGT-ATCA-TTTAGCGTGTCTGCTCGN----------NNNNNNNNN-NN--NNNNNNNNNN--NN---------NNN-NNNNNNAACG-----ATA-CGAT--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTA----C--TAT--CA-TTTTGCG-CGCCCCCCN---NNNNNNNNNNNNNNNNNNNNN-NNN-NGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ATTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-A--G-AA---C-TTAGA-ACTAA-AT-AA-TA-A-TTT--TAA-A-CAC-ACACAA-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGTA-ATTA-ATA-CCTA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-GACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---G-------TTAA-G-AAA-----TTT-TT----A-CC-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TT-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--TAACAT--AAG-TGGCGC---AC--AATAC--ACG-GGACTATACGG
gi|4 : CCCCTTTCTCCTC-T-CTC-TCTC-TA-ATGATTTTT-----GATTTTGA-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCATTTTAGCGTGTTTGCT---------------CTCTCTC-TC--TCTCTCATCTCATC---------TCT-CG----AACG------TA-CG----TT---T-C-GA--TTTAG-GAAATG-C---AC--CCATT-T-GAAATTGAA-TGA---TT-CT---TT----ACTC----GAT--T-TTT-AAA-GAA-AT-ATAATT-GG-----G-TTTGCA-CAT-CATGTAT---T--TAT--CA-AATTGTG-CGCCCCCCC---CCCCCCTCTCTCTCTCTCTCT-CTC-TGATA----AC-GTTTCTCAA-TTTAGGATATGTT--A-G-ATTT--AAAA-TT-----AATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGAT-CTTGTTTAATAAT-G----------------CA-G-----------AT-----ATTGG---A-TT-T-ACTG-AGTTG--TTAT--C--GA-TAAGGTAA--CG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACTAA----T--TTTTTTT-T--GAATGA--AAA-CAA-A-TCA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A--ACAACAC-A-TACATATT-T--AAGTAA-AT-TATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCGTCC-CA--TCG-TAAACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-----GA------------AAA------------TCCA--A-A----------TCAT--CCTGTG--GAATT---TT---T--ATTTTA-G---CCTTTAGGTTAA-G-AA-------TT-TT----A-CC-CTCAT-T-CT-TTAC---CATTT-TTTTT-T--TATG--CGCAC--AA---TACATAGGAACT-AG-GTT-TTT---C-AGAT-G-TTTT--TC-CCC--C-AA-GTTGGGGG---TGC--G-CATT-G--T-A
gi|5 : T----CTC-TTCTC-TCTC-TA-ATGA-TTTTTTT--GATTTTGA-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGAGTG---------------------CTCTCCT-TC--TCTCTCTTCT--T--------------------AACG-----ATA-CG-T--TT-----C-GA--TTTAG-AAAATG-T--TACC-AC-TA-T-GAAATTAAA-TGAT--TT-CT---TTA----CTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTT--GCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCC--------------TCTC----TCTCTCT-CTC-TGACA-AT-AT-G-TT-TCAA-TTTA-GAAATGTT--ATG-ATTT-AAAAA-TTTTTAAAATT-GTTT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTG-TT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACT-ACAATT--TTTTTTT-T----ATGA--AAA-CAA-A-------AAT-AC-G-AA---C-TTAAA-ACTA-------------------AA-A-CAC-ACAC-A-TACATATT-C--AAGTAT-AAATATACATTTATA--C-T-ATGCA-ATTA-ATA-CATA--C--TTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--CCG-T-AAGA-TCGTT---T-TG-AA--T--TGCAGATA----AAAGA-GGCA---GGAAAAATCCAAT-AAA------------TTTT--A-T----------TCAT--CCTGTG--TAA-T---TT---TC-ATTTTA-G---TA------TAAA-A-AAA-----TTT-TT----A-CA-CTCAT-T-CT-A--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CACA-A--T-ACAC--AAG-T-GCGC---AC--AATAC--ATG-AGATTTTAC
gi|6 : tctcC----------TTCTCTCTC-TCTTTCTCTCATTT--TTTAAAAGATATCT-AT----AACGGGTTTACA-CA-TGGTC---T-N-NN--NNNNN-NNNNNN-N--NNN--NN-NN-N-NNNNNNNNN-TCAT--TT--T---TTA---A--------A---T-ATA-GAA-GCA-AA-AC-ATTCGGCACATGTCTTAC----TACATGTAT---CATTAG--CA--TTTGTG------CTCT---CTC---TCTCTCTC-CTCTCT-CTC----TG-AT-AC-GTTT-TCAA-TTTAGT-AATGTTA-ATG-ACTT-AAAAA-TTA---AAATT-ATAT-CTTT--GTA-TATTACTTGTGAATGTCTT---AGCC--ATATATACT---CAT-TCAA-ACTTG--T--TAAT-G----------------CA-GCCGTTTAAACAAT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--CTGAA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTAA-----TGT--CCA--GA--AACAA----TTTTTGT-T--A-ATGA--AAA-CAA-A-TTAATTATT-AA-G-AA---CGTTAGA-ACT-A-AT-AA-TA-A-TCT--TAAGA-CACAACAC-ATTACATATTATA-AAATAACAT-TAAACA--TATA--CAT-ATGCA-ATT--ATATCATA--C-GTTT-ACTA-TG-AT-----TACC-GT-C-ATT---------A--TCG-T-AACA-ATGTT---T-CGTGAACA--TGCA---A----GACT-------------------------A------------TTTCCAA-A----------TCAT--CCTATG--GAC-T---TTTAAT--ATTTTA-GAGTT-------TTAA-GAAAA-----TTTGTT----ACCT-CTC-T-T-TT-T--C---CA--T-TTTTT-TTATATG--CGCACCAAA---TACATA-G-ACTAAG-GTT-TTTC--C-AG-T-G-TTTTACTC-CCC--CAAA-GT-GGTGG---TGC--G-CATT-G--T-ACAT--GAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|7 : CCCCCTTT----CTT-C-TTC-CTTC-TC-AT----TTT-----G-TTT--A-------A---ATATAGAAGAAAACGTCGAGTGGCA----------------CATG-TTCTAC-TTACATGTTATCA-TTTAGC--GTTTG--TGC----------TCCTTTCTC-TC--TCTCTC------TC---------TCT-CC------TG-----ATACCG-T--TT---T-C-AA---TTAG-TAAATG-T--TATA-AC-TT-TAAAAATTAAA-TTAT--AT-CT---TTA---G-TA----GA---T-CTT-
gi|7 : tttaaaaattatctaaacaggcttacacatgg-----GTTCT--A-CTTACATGT--------TAT--CA-TTTAGCG-T------TTGTGCTCCTTTCTCTCTCTCTCTCT-CTC-C--TG-AT-ACCGTTT-TCAA-TT-AGTAAATGTT--ATA-ACTTTAAAAA-TT----AAATT-ATAT-CTTTA-GTA-GATC-TTT-TGAATGC----------------AT-CT---CAT-TCAATACTTGTTT--AATT-G----------------CA-GCCGTTAAACG-AT-----A-TG----A-GT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC---G-ACGTAAATA---A------T-----TAGT-A-----TGTCAGAATT-ACCAAT--TT--TTTTTTT-T--A-ATGA--AGA-CAA-AATTA--TATT-AAAG-AA---C-TTAGA-ACTAA-ATGAA-TAGA-TTT--TAA-A-GACCACAC-A-TACATATT-TTTAA-TAA--TATATA-A--TATA--C-T-ATGCAGATTA-ATA-CATA--C-GTTT-CTAT-TGCAT-----TACCCGT-C-ATTGCCG--T-CA--TCGCT-AACA-ATGTT---TTCGCGA--A--TGCAG--A-------TA-------------------------------------TTCC--A-A----------TCAT--CCTATT--GGA-TATTTT---T--ATGTTA-G---T-------TTAA-G-AA------TTT-TT----A-C--CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--TGCACG-AA---TACACAGG-ACTAAG-GTT-TTTT--C-AGAT-G-TTTT--CC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-GGCC-ACAC--AAG-T-GCGC---CC--TATAC--ACG-ATACTATACGttgaatgcatctcattcaatacttgtttaattgcagccgttaaacgatatgagttactgattgttatcgataggtacgacgtaaataattagtatgtcagaattaccaatttttttttttaatgaagacaaaattatattaaagaacttagaactaaatgaatagattttaaagaccacacatacatatttttaataatatataatatactatgcagattaatacatacgtttctattgcattacccgtcattgccgtcatcgctaacaatgttttcgcgaatgcagatattccaatcatcctattggatatttttatgttagtttaagaatttttacctcattcttccatttttttgatgtgcacgaatacacaggactaaggttttttcagatgttttccccccaaagtggggggtgcgcattggccacacaagtgcgccctatacacgatactatacg
gi|8 : tttaaaaattatctaaacaggcttacacatggccccctttcttcttccttctcattttgtttaaatatagaagaaaacgtcgagtggcacatCCCCTTT----CT--T-CTC-TCTC-TA-ATGA-TTTTT----GATTTG-A-------A---A----------------GA-----A----------------CAAT-T-CTAC-T-ACATGT-ATCA-ATTAGTGTGTTTG
gi|8 : ACG-----ATA-CG-T--TT---TTC-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TTACT---TTA----CTC----GG---T-TTTTAAA-GAA-ATTAT-ATT-GG-----GTT--GCA-CATACAT-TAT---C--TAT--CA-TTTTGCG-CGCNNNNNN---NNNNNNNNNNNNNNNNNNNNN-N----GATG-AT-AC-GTTT-TCA--TTTAGGAAATGTTTTAT--ATTT-AAAAG-TT----AAATT-GTCTTCTTTA-GTA-GAAT-TTGGT-AATGCTTT-GAAC-A--ATATATACT---CAT-TCGATACTTGTT----AAT-G----------------CA-G-----------AT-----A-TGG---AATT-T-ACTG-A-TTG--TTAT--A--TA-G-AGGTAC--AG-ACGCAA-TA---A------T-----TAGT-A------AT--AAATTGACTTACAATTGTTTTTTTTAT--G-ATGA--AAAACAA-A-ATA--TATTTAA-G-AAAGAC-T-AGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATA-ATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT--CTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-AGTGGG------------AAA------------tgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgatacgtttttcgatttaggaaatgctacactttgaaattgaatgatttactttactcggtttttaaagaaattatattgggttgcacatacattatctatcattttgcgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatacgttttcatttaggaaatgttttatatttaaaagttaaattgtcttctttagtagaatttggtaatgctttgaacaatatatactcattcgatacttgttaatgcagatatggaatttactgattgttatatagaggtacagacgcaataattagtaataaattgacttacaattgttttttttatgatgaaaaacaaaatatatttaagaaagactagaactaaatgaataattttaaacacacacatacatatttaagtaaataatacatatactatgcaattaatacatacgtttctttgattaccgtcaatgtcgtcatcgtaacattgtttcggaatgcagaaaataggagtgggaaaa
gi|9 : cccctttcttctctctctaatgatttttgatttgaaagaacaattctactacatgtatcaattagtgtgtttgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGA-TTTT-----GA-------------A---A----------------GA-----A----------------AATGAT-CTA--T-ACATGT-ATCA-TTTAGCCTGTTTGTGCGCATNNNNNNNNNNNNNNNNN-NN--NNNNNNNNNN--NN---------NNN-NN----NATG-----AT--CA-C--TT---T-C-GAAATTTAATGAAATG-T--TCG--AC-TT-T--AAATTGAA-TGAT--TT-TT---TTA----TTC----GA---TATTT-AAA-GAA-CT-AT-ATT-GG--------TTGCA-CATACATGTATTA-C--TAT--CA-TTTTGCA-CGCNNNNNN---NNNNNNNNNNNNNNNNNNNNN-NN---AATG-AT-AC-GTTT-TCAA-TG-AGAGAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GT-T-CTTTA-GT--GATC-TTTGT--ATGCTTT-GAAG-C--ACATATACT---CATATC-ATACT-GTTT---AAT-G----------------CA-GCCTTAAACG--AT-------TGG---A-TT-TTACTG-A-TTT--TTAT--CC-GA-T-AG-TAC--AG-ACGTAAATA---A------T------AGT-A------------ATTGAC-AACAAAT--TTTTTTT-T--T-AT-A--AAA-CAATA-TTA--TATT-AA-G-AA---C-TTAGA-ACTAATATGAA-TA-A-TTTTATAA-A-AAC-AAAC-A-TACATATT-T--a
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTGTGAATTAAGTTGGAGGTCTTTGAAAGAAAATCTTATATACGTGGTTACAGCGTGCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTAAAAGATATCTATAACAGGTTACACATGCCCCCTTCTCTCCTTCTCATTTTTTTTAAATATAGAAGAAAACGT
Unaligned ( gi|17 ): TTAATGTAATATTTTCAATTATTTAGGAAAAGTAATATTTGGAAACTTTTTTTTATTAGATGTTGATAAAAAATATAATTGGACGCACATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333 777777777777777777777 444444444444444444444444444 111111111111111 11 222222222222 111 11 111 11111111111111 111 11 1111 111111 5555555555555555555555555555555 1111111 11 1111111111111111 11111111111 11 111111 11111111 1 1111 11111 77777777777777777777777777777777777777777777777777777777777777777 111 11 22222222222 111 11111 1111 11 11
lowQualScore : 9999 8 4 4 4 8 5 4 44444444444444444444444444444444444444444444444444444444444444444 4 4 8 4 4 4 2 555555555555555555555 5 66 000000000000000000000000000 666666666666666 88888 4 55 4 8888 77 4 6666 4 2 55 4 777 111111111111 000 3 3 4 4 4 4 4 99999 0 00 4 111 55 55 3 4 33333333333333 2 4 0 111 4 4 4 4 88 0 0 33 4 4 4 2222 4 5 4 4 4 4 4 4 55 777 4 4 0 111111 4 8888888888888888888888888888888 4444444 777 4 4 4 4 4 99 55 33 4 4 888 4 0 6666666666666666 4 66666666666 2 00 3 0 55 555555 55 4 22222222 8 4 3 66666 3 7 2 3 7 3 55 3 99 0 3 6 3333 55 1 55 99 4 4 3 3 3 5555 3 3 3 99999 3 3 3 4 9999 55 7 3 3 666 3 7 33333 55 77777777777777777777777777777777777777777777777777777777777777777 99 55 4 111 777 33 4 11111111111 333 55555 3 1111 3 88 3 3 66666666 55 3 3 00 88 33 666 55 3 3 88 3 3 3 55 3 55 3 3 666 99 777777 66 4 4 777 66 66 5 0 0
lowQualScore : .... . . . . . . . ................................................................. . . . . . . . ..................... . .. ........................... ............... ..... . .. . .... .. . .... . . .. . ... ............ ... . . . . . . . ..... . .. . ... .. .. . . .............. . . . ... . . . . .. . . .. . . . .... . . . . . . . . .. ... . . . ...... . ............................... ....... ... . . . . . .. .. .. . . ... . . ................ . ........... . .. . . .. ...... .. . ........ . . . ..... . . . . . . .. . .. . . . .... .. . .. .. . . . . . .... . . . ..... . . . . .... .. . . . ... . . ..... .. ................................................................. .. .. . ... ... .. . ........... ... ..... . .... . .. . . ........ .. . . .. .. .. ... .. . . .. . . . .. . .. . . ... .. ...... .. . . ... .. .. . . .
lowQualScore : 4444 9 4 4 4 9 0 0 55555555555555555555555555555555555555555555555555555555555555555 0 0 0 0 0 0 5 666666666666666666666 7 99 000000000000000000000000000 111111111111111 44444 0 55 0 6666 55 0 1111 0 5 55 0 000 999999999999 000 6 6 0 0 0 0 0 11111 7 33 0 444 00 00 6 0 88888888888888 4 4 3 333 0 0 0 0 88 8 8 55 0 0 0 5555 0 7 0 0 0 0 0 0 55 000 0 8 8 111111 0 0000000000000000000000000000000 8888888 000 0 0 0 0 0 55 55 55 0 0 777 0 8 8888888888888888 0 44444444444 5 44 2 9 55 000000 55 0 44444444 0 0 6 88888 6 3 8 6 3 6 00 6 55 0 3 7 5555 99 3 55 55 0 0 6 6 6 5555 6 6 6 11111 6 6 6 9 0000 00 3 6 6 444 6 3 99999 00 77777777777777777777777777777777777777777777777777777777777777777 55 55 0 000 000 55 0 33333333333 333 55555 6 4444 6 22 6 6 55555555 00 6 6 00 66 66 444 99 6 6 66 6 6 6 00 6 00 6 6 444 55 333333 11 0 0 000 11 99 0 2 5
consensus : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GATTT--A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTGTTTGC--G----C----------TCCTCTCTC-TC--TCTCTCNTCT--TC---------TCT-CC----AACG-----ATA-CG-T--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCTCTCT-CTC-TGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGG---GTGC--GCATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
Reference ( family-4044 ) : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GATTT--A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTGTTTGC-CG----C----------TCCTCTCTC-TC--TCTCTCNTCT--TC---------TCT-CC----AACG-----ATA-CG-T--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCTCTCT-CTC-TGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGG---GTGC--GCATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|1 : CCCCCTT----CTCGT-CTC-TCTC-TACATTA-GTTT-------TTT--ACCATATCA---A----------------GA-----AGTAAACGTTCGGTGCACATG-T-CTACCT-ACATGT-ATCA-TTTAGCGTTTTT
gi|1 : CTCCTCTT----CTC-T-CTCCTCTCGTC-ATCG-TTTTTTTTAGAATT--A-------ATGAA----------------GA-----AAAAGTTCGGCTGCACTTATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTCTTCG-------------------TCCTCTCTCTTC--TCGCTC-TCT--GT---------TCC-CCAT--AACG-----AT-----T--GT---T-CAAA--TTTAG-TATATGTT--TATGGAC-TTAA-AAAATTAAATTTAT--AT-CT---TTAGAGAGTCTTGTGATGTT-TTT-GAA-GCATAT-AT-AAT-GG-----tgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctactacatgtatcatttagcgtcttcgtcctctctcttctcgctctctgttccccataacgattgttcaaatttagtatatgtttatggacttaaaaaattaaatttatatctttagagagtcttgtgatgtttttgaagcatatataatggccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|1 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatTACATGTAT---C--------A-TTTAGCGTCTTCGTCCT---CTCTCTTCTCGCTCTCTGTTC-CCCATAACG-AT-----TGT-TCAAATTTAGTATATGTTT-ATGGACTT-AAAAAATT----AAATTTATAT-CTTTA-G-A-GAGT-CTTGTGA-TGTTTTTGAAG-C--ATATATAATGGCCAT---AATACCTATGT--TTAT-GGCACGCGCAGCCGTAACACG-----------AT-----A-TGGGTCA-TTGT-ACGGGA-CTGGTTTATTCC--GAGT-AGGTAGTGAG-AAGTAAATATATA------TCTCTATAGT-AATTTTCGT--AGAT------ACAATT--TTTTTTT-TTAG-ATGACCAAA-CAACA-TTA--TCTTGAA-G-AA---C-TAGAA-ACTAATATGAAATAGA-TTT--TAA-A-GAC-ACAC-ACTAAATATTGTG-AAATAA-TTGTATACC--AGTAATC-T-ATGCA-ATTA-ATA-CATA----GTTC-TCGTATG-AT-----TACC-GT-C-A--------------TCG-T-AACAATTGTT---T-TG--A--A--TGCAG--A-------TA-------------------------------------TTCC--ACA----------TCATGCCTTGTG--GAA-T---TT---T--ATTTTA-A---T-------TTAATG-AAA-----TTT-TTT---A-CCTCTCAT-AACT-T--C---CA--TATTTTT-T--GATG--CGCAC--AA---TACATAGA-TCTAAG-GTTATTTCTTC-AGAT-G-TTTT--T--CCC--CAAA-GTGGGAG---GTGCCTGCA-T-A--T-ACAT------T-GCGCTTTACGGAATACGGACGTGGACTATAccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|10 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctacC--TCTCTCTTCT--TC---------CCTACCGAATAATG-----GCA-GG-T--GTATAC-T-AA--TCGAG-AATATG-TATTACG-AC-TT-A-AAGACAGAA-T-ATAATT-CTGTTTTT---ATTC----GA---T-TTT-AAA-GAC-CT-AT-ATT-GG-----GTT--GCATCATACATGTAT---C--TACTACA-TTTTGCA-CGCTCTTCT---CTACGTCCTCTCTCTC-CTCTTCTC-TAATGCATGAC-GTTT-TCAAATTTAGGAA-TGTT--ATG-ACTT-AAAAA-TT----AAATT-GTTT-CTTTA-GTAGGATC--TTGTGAATG-TTT-GAAG-C--A-ATATAC----CAT-TC-ATACTTG-TT--TAAT-GC---------------CA-G-----------CTTAACAA-TGG---A-TT-T-ACTG-A-TTGT-TTAT--C--GA-T---GTAC---G-A-GTAA----------------------T-A-----TGT---AATTGAT--AC-ATT--TTTTTTT------ATGA--CA---AA-A-T----TATT-AA-GAAA---A-TTAGATACT-A-ATGAA-TA-A-TAT----A-A-CAA-ACAC-A-T-CATA-T-T--AAGTAA-ATAaacgac
gi|11 : -AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTA--TAA-AACAC-ACAC-A-TACATATTCT--AAGTAA-ATATATACA--TGTA--C-TTATGCA-ATTA-ATA-CATA--C-CTTTCTTTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AATA-TCGTT---T-CG-AA--T--TGCAG--AT---AAAGA-GC-A---GGAAAAAATCCAATAAA------------TTTT--A-T----------TCATC-CCTGTG--TAA-TC--TT---T--ATTTTA-G---T-------TT-----AAATTTTTTTT-TT----A-CA-CTCAT-T-CT-T--C---CA--T-TTTTTGT--GTTG--CGCACCAAA---TACATAGG-ACTAAG-GTT-TTTC--CAAGAT-GTTTTT--TC-CCC--CAAA-GTGGGGG---GTGC--GCACC-A----ACACAAAAG-T-GCGC---AC--AATAC--ATG-AGATTTTACG
gi|12 : aA-ATAG-ATA-TATAATC-TTTT-TCCC-CG-ATGTGAATACC-GT-C-AGTGTCG--C-CA--GCG-C-AAGA-TCGTT---T-CG-GA--GATTGCAG--AT---AAAGA-GT-A---GGGA----------AAA------------TGTCT-A-ACACATTGTTTTCAT--CCTGTGTTATA-T---TT---T--ACTTTA-G---T-------TAAA-A-AAAATT--TTT-TT----A-CA-CTCATAT-CT--------CA--T-TTTTT-T--GATG--CGCAC--A----TACATAGG--CTAAG-GTT-TTTTT-C-AGCT-G-TTTT--TC-CCC----AA-GTGGGGGGCCGTGCG-GCATT-G--T-ACAC--ACG-T-GCGC---GC--AATA
gi|13 : gtaagtatacttcttaggtaggttC-AC-C-A-TGCGTATG-T--AAGTAA-ATATATACA--TGTAA-C-T-ATGCA-ATTA-ATA-CATA--CCGGTT-TCTT-TG-AT-----TCCG-GTGCGAGTGTCG--CGCAAATCGGT-CAGA-TTGTTGGTT-CG-AA--T--TGCAG--GGGATAAAGA-GC-A---GG------------AAAAATCCAATAAATTTTT--A-T----------TCAT--C-TGTG--TAA-T---TT---TTTATTTTCCG---T-------GTAA---AAA-----TTT-TTGTTTA-CA-CTCAT-T-CT-T--TGCGCG--T-TTTTT-TTGGATGG-CGCAC--GAGAGTACATAGG---CAAGCGTT-TTTC--G-ACATCG-TTTT--TTGCCC--CAAA-GTGGGCG---Ggtggagactctta
gi|14 : CCCCCCTT----CTCGT-CTC-TCTC-TACATTA-GTTT-------TTT--ACCATATCA---A----------------GA-----AGTAAACGTTCGGTGCACATG-T-CTACCT-ACATGT-ATCA-TTTAGCGTTTTTg
gi|16 : ttgtgaatattttggattcttgaaagaaatcttataacaggtttcaacactgccgctttctccttctctcctcgtctcttctctctctctctctctcgtctattttttaataaagatataataatgacaggttacacatgcc-AAA-----TTT-GC----A-CA-CCCAT-T-TTGT--C---AA--A-TTTG-----GATG--CGCAT--GA---TACATAGG-ACTAAA-GTT-TTTT--T-TATT-A-TTAT--TT-GTTAATAAATGTTTGGG---ATGT--GTGTT-A--T-ACAC--GAG-T-GCGC---Atgtgc
gi|18 : ----GA---T-TTT-AAAAGAA-TT-AT-ATT-GG-----GTTT--CA-TATACATGTATCTAC--TAT--CA-TTTTG
gi|19 : AG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|2 : CCCCTTT----CTC-T-TTC-TCTC--A-ATTA-TTTT-----GATTTG-A-------A---A----------------GA-----A----------------C-TC-C-TTAC-T-AAATG---TTA-TTTAGTGTGTTTGC-t
gi|2 : gC----AACG-----AT--------TT---T-C-GA--TTTAG-GAAATG-C--TAC--AA-TT-T-GAAATTGAA-TGAT--TT-CT---T-----ACT-----GA---T-TT---AA-GAA-AT-AT-ATT-GG-----GGTTTGCA--ATAC-TGTAT---C--TAT--CATTTTTGTG-TGCCTCCgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|2 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGATG-AT-A--GTTT-TCA--TTTAGGAA---TC--GTA-ATT---AAAA-TT----AA-TT-GTCT-CTTTACGTA-GATA-TT-GTGAATGTTTT-GAAG-CGAATATATACT---CAT-TCGA--CTTGTT----AATCG----------------CA-G-----------AT-------TGG---A-TT-T-ACTG-A-T------AT--CC-GA-T-AGGTAC--AGTACGCAAATA---AATAGGCC-----TAGT-A-----CAT--AA--T--CTA-CAATT--TTTT-------G-ATGA--A---CAA---TT---TATT-AA-G-AA-----TTAG----CAA-ATAAA-TA-AATTT--TAA-A--AC--CAC-C-TACATATT-T--A-GTAA--TATATA-A--TACA--C-T-ATGCA-ATTAGATA-CAT-----GTTC-T-TT-TG-AT-----TACC-G--C-AATGTT---T-CA--TCG-T-AACA-TTGTT-----CG-GA-----T-CAG--A----AAATAAGG-A---GG------------AAA------------ATTCCAA-A----------TCAT--CCTGTG--GAA-T---TT---TT-ATTTTA-G---G-------TTGA-----A-----TTT-TT----A-CC-CTCAT-T-CT-T--C---C-----CTTTT-T--GATGACTGCAC--AA---TACAT-GG-A--AAG-GTT-TTTC--C-AGA--G---TT--TC-CCC--CAAA-GT-GGGG---ATGC--GCATTGG--T-ACAT--AAGCT-GCGC---AC--AATAC--ACG-GGA-TCTACGtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|3 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----G------A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-GCATGT-ATCA-TTTAGCGTGTCTGCTCGNNNNN----------NNNNNNNNN-NN--NNNNNNNNNN--NN---------NNN-NN----AACG-----ATA-CGAT--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTA----C--TAT--CA-TTTTGCG-CGCCCCCCN---NNNNNNNNNNNNNNNNNNNNN-NNN-NGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ATTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT--A-G-AA---C-TTAGA-ACTAA-AT-AA-TA-A-TTT--TAA-A-CAC-ACACAA-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGTA-ATTA-ATA-CCTA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-GACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---G-------TTAA-G-AAA-----TTT-TT----A-CC-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TT-CCC--CAAA-GTGGGGG---GTGC--GCATT-G--TAACAT--AAG-TGGCGC---AC--AATAC--ACG-GGACTATACGG
gi|4 : CCCCTTTCTCCTC-T-CTC-TCTC-TA-ATGATTTTT-----GATTTTGA-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCATTTTAGCGTGTTTGC-------------------TCTCTCTC-TC--TCTCTCATCTCATC---------TCT-CG----AACG------TA-CG----TT---T-C-GA--TTTAG-GAAATG-C---AC--CCATT-T-GAAATTGAA-TGA---TT-CT---TT----ACTC----GAT--T-TTT-AAA-GAA-AT-ATAATT-GG-----G-TTTGCA-CAT-CATGTAT---T--TAT--CA-AATTGTG-CGCCCCCCC---CCCCCCTCTCTCTCTCTCTCT-CTC-TGATA----AC-GTTTCTCAA-TTTAGGATATGTT--A-G-ATTT--AAAA-TT-----AATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGAT-CTTGTTTAATAAT-G----------------CA-G-----------AT-----ATTGG---A-TT-T-ACTG-AGTTG--TTAT--C--GA-TAAGGTAA--CG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACTAA----T--TTTTTTT-T--GAATGA--AAA-CAA-A-TCA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A--ACAACAC-A-TACATATT-T--AAGTAA-AT-TATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCGTCC-CA--TCG-TAAACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-----GA------------AAA------------TCCA--A-A----------TCAT--CCTGTG--GAATT---TT---T--ATTTTA-G---CCTTTAGGTTAA-G-AA-------TT-TT----A-CC-CTCAT-T-CT-TTAC---CATTT-TTTTT-T--TATG--CGCAC--AA---TACATAGGAACT-AG-GTT-TTT---C-AGAT-G-TTTT--TC-CCC--C-AA-GTTGGGG---GTGC--GCATT-G--T-A
gi|5 : T----CTC-TTCTC-TCTC-TA-ATGA-TTTTTTT--GATTTTGA-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGAGTG-------------------------CTCTCCT-TC--TCTCTCTTCT--T--------------------AACG-----ATA-CG-T--TT-----C-GA--TTTAG-AAAATG-T--TACC-AC-TA-T-GAAATTAAA-TGAT--TT-CT---TTA----CTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTT--GCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCC--------------TCTC----TCTCTCT-CTC-TGACA-AT-AT-G-TT-TCAA-TTTA-GAAATGTT--ATG-ATTT-AAAAA-TTTTTAAAATT-GTTT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTG-TT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACT-ACAATT--TTTTTTT-T----ATGA--AAA-CAA-A-------AAT-AC-G-AA---C-TTAAA-ACTA-------------------AA-A-CAC-ACAC-A-TACATATT-C--AAGTAT-AAATATACATTTATA--C-T-ATGCA-ATTA-ATA-CATA--C--TTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--CCG-T-AAGA-TCGTT---T-TG-AA--T--TGCAGATA----AAAGA-GGCA---GGAAAAATCCAAT-AAA------------TTTT--A-T----------TCAT--CCTGTG--TAA-T---TT---TC-ATTTTA-G---TA------TAAA-A-AAA-----TTT-TT----A-CA-CTCAT-T-CT-A--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGG---GTGC--GCACA-A--T-ACAC--AAG-T-GCGC---AC--AATAC--ATG-AGATTTTAC
gi|6 : tctc----C----------TTCTCTCTC-TCTTTCTCTCATTT--TTTAAAAGATATCT-AT----AACGGGTTTACA-CA-TGGTC---T-N-NN--NNNNN-NNNNNN-N--NNN--NN-NN-N-NNNNNNNNN-TCAT--TT--T---TTA---A--------A---T-ATA-GAA-GCA-AA-AC-ATTCGGCACATGTCTTAC----TACATGTAT---CATTAG--CA--TTTGTG------CTCT---CTC---TCTCTCTC-CTCTCT-CTC----TG-AT-AC-GTTT-TCAA-TTTAGT-AATGTTA-ATG-ACTT-AAAAA-TTA---AAATT-ATAT-CTTT--GTA-TATTACTTGTGAATGTCTT---AGCC--ATATATACT---CAT-TCAA-ACTTG--T--TAAT-G----------------CA-GCCGTTTAAACAAT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--CTGAA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTAA-----TGT--CCA--GA--AACAA----TTTTTGT-T--A-ATGA--AAA-CAA-A-TTAATTATT-AA-G-AA---CGTTAGA-ACT-A-AT-AA-TA-A-TCT--TAAGA-CACAACAC-ATTACATATTATA-AAATAACAT-TAAACA--TATA--CAT-ATGCA-ATT--ATATCATA--C-GTTT-ACTA-TG-AT-----TACC-GT-C-ATT---------A--TCG-T-AACA-ATGTT---T-CGTGAACA--TGCA---A----GACT-------------------------A------------TTTCCAA-A----------TCAT--CCTATG--GAC-T---TTTAAT--ATTTTA-GAGTT-------TTAA-GAAAA-----TTTGTT----ACCT-CTC-T-T-TT-T--C---CA--T-TTTTT-TTATATG--CGCACCAAA---TACATA-G-ACTAAG-GTT-TTTC--C-AG-T-G-TTTTACTC-CCC--CAAA-GT-GGTG---GTGC--GCATT-G--T-ACAT--GAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|7 : CCCCCTTT----CTT-C-TTC-CTTC-TC-AT----TTT-----G-TTT--A-------A---ATATAGAAGAAAACGTCGAGTGGCA----------------CATG-TTCTAC-TTACATGTTATCA-TTTAGCGT--TTGT--G----C----------TCCTTTCTC-TC--TCTCTC------TC---------TCT-CC------TG-----ATACCG-T--TT---T-C-AA---TTAG-TAAATG-T--TATA-AC-TT-TAAAAATTAAA-TTAT--AT-CT---TTA---G-TA----GA---T-CTT-
gi|7 : tttaaaaattatctaaacaggcttacacatgg-----GTTCT--A-CTTACATGT--------TAT--CA-TTTAGCG-T------TTGTGCTCCTTTCTCTCTCTCTCTCT-CTC-C--TG-AT-ACCGTTT-TCAA-TT-AGTAAATGTT--ATA-ACTTTAAAAA-TT----AAATT-ATAT-CTTTA-GTA-GATC-TTT-TGAATGC----------------AT-CT---CAT-TCAATACTTGTTT--AATT-G----------------CA-GCCGTTAAACG-AT-----A-TG----A-GT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC---G-ACGTAAATA---A------T-----TAGT-A-----TGTCAGAATT-ACCAAT--TT--TTTTTTT-T--A-ATGA--AGA-CAA-AATTA--TATT-AAAG-AA---C-TTAGA-ACTAA-ATGAA-TAGA-TTT--TAA-A-GACCACAC-A-TACATATT-TTTAA-TAA--TATATA-A--TATA--C-T-ATGCAGATTA-ATA-CATA--C-GTTT-CTAT-TGCAT-----TACCCGT-C-ATTGCCG--T-CA--TCGCT-AACA-ATGTT---TTCGCGA--A--TGCAG--A-------TA-------------------------------------TTCC--A-A----------TCAT--CCTATT--GGA-TATTTT---T--ATGTTA-G---T-------TTAA-G-AA------TTT-TT----A-C--CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--TGCACG-AA---TACACAGG-ACTAAG-GTT-TTTT--C-AGAT-G-TTTT--CC-CCC--CAAA-GTGGGGG---GTGC--GCATT-GGCC-ACAC--AAG-T-GCGC---CC--TATAC--ACG-ATACTATACGttgaatgcatctcattcaatacttgtttaattgcagccgttaaacgatatgagttactgattgttatcgataggtacgacgtaaataattagtatgtcagaattaccaatttttttttttaatgaagacaaaattatattaaagaacttagaactaaatgaatagattttaaagaccacacatacatatttttaataatatataatatactatgcagattaatacatacgtttctattgcattacccgtcattgccgtcatcgctaacaatgttttcgcgaatgcagatattccaatcatcctattggatatttttatgttagtttaagaatttttacctcattcttccatttttttgatgtgcacgaatacacaggactaaggttttttcagatgttttccccccaaagtggggggtgcgcattggccacacaagtgcgccctatacacgatactatacg
gi|8 : tttaaaaattatctaaacaggcttacacatggccccctttcttcttccttctcattttgtttaaatatagaagaaaacgtcgagtggcacatCCCCTTT----CT--T-CTC-TCTC-TA-ATGA-TTTTT----GATTTG-A-------A---A----------------GA-----A----------------CAAT-T-CTAC-T-ACATGT-ATCA-ATTAGTGTGTTTG
gi|8 : ACG-----ATA-CG-T--TT---TTC-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TTACT---TTA----CTC----GG---T-TTTTAAA-GAA-ATTAT-ATT-GG-----GTT--GCA-CATACAT-TAT---C--TAT--CA-TTTTGCG-CGCNNNNNN---NNNNNNNNNNNNNNNNNNNNN-N----GATG-AT-AC-GTTT-TCA--TTTAGGAAATGTTTTAT--ATTT-AAAAG-TT----AAATT-GTCTTCTTTA-GTA-GAAT-TTGGT-AATGCTTT-GAAC-A--ATATATACT---CAT-TCGATACTTGTT----AAT-G----------------CA-G-----------AT-----A-TGG---AATT-T-ACTG-A-TTG--TTAT--A--TA-G-AGGTAC--AG-ACGCAA-TA---A------T-----TAGT-A------AT--AAATTGACTTACAATTGTTTTTTTTAT--G-ATGA--AAAACAA-A-ATA--TATTTAA-G-AAAGAC-T-AGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATA-ATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT--CTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAATA-GG-AGTGGG------------AAA------------tgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgatacgtttttcgatttaggaaatgctacactttgaaattgaatgatttactttactcggtttttaaagaaattatattgggttgcacatacattatctatcattttgcgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatacgttttcatttaggaaatgttttatatttaaaagttaaattgtcttctttagtagaatttggtaatgctttgaacaatatatactcattcgatacttgttaatgcagatatggaatttactgattgttatatagaggtacagacgcaataattagtaataaattgacttacaattgttttttttatgatgaaaaacaaaatatatttaagaaagactagaactaaatgaataattttaaacacacacatacatatttaagtaaataatacatatactatgcaattaatacatacgtttctttgattaccgtcaatgtcgtcatcgtaacattgtttcggaatgcagaaaataggagtgggaaaa
gi|9 : cccctttcttctctctctaatgatttttgatttgaaagaacaattctactacatgtatcaattagtgtgtttgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGA-TTTT-----GA-------------A---A----------------GA-----A----------------AATGAT-CTA--T-ACATGT-ATCA-TTTAGCCTGTTTGTGCG----CATNNNNNNNNNNNNNNNNN-NN--NNNNNNNNNN--NN---------NNN-NN----NATG-----AT--CA-C--TT---T-C-GAAATTTAATGAAATG-T--TCG--AC-TT-T--AAATTGAA-TGAT--TT-TT---TTA----TTC----GA---TATTT-AAA-GAA-CT-AT-ATT-GG--------TTGCA-CATACATGTATTA-C--TAT--CA-TTTTGCA-CGCNNNNNN---NNNNNNNNNNNNNNNNNNNNN-NN---AATG-AT-AC-GTTT-TCAA-TG-AGAGAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GT-T-CTTTA-GT--GATC-TTTGT--ATGCTTT-GAAG-C--ACATATACT---CATATC-ATACT-GTTT---AAT-G----------------CA-GCCTTAAACG--AT-------TGG---A-TT-TTACTG-A-TTT--TTAT--CC-GA-T-AG-TAC--AG-ACGTAAATA---A------T------AGT-A------------ATTGAC-AACAAAT--TTTTTTT-T--T-AT-A--AAA-CAATA-TTA--TATT-AA-G-AA---C-TTAGA-ACTAATATGAA-TA-A-TTTTATAA-A-AAC-AAAC-A-TACATATT-T--a
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTGTGAATTAAGTTGGAGGTCTTTGAAAGAAAATCTTATATACGTGGTTACAGCGTGCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTAAAAGATATCTATAACAGGTTACACATGCCCCCTTCTCTCCTTCTCATTTTTTTTAAATATAGAAGAAAACGT
Unaligned ( gi|17 ): TTAATGTAATATTTTCAATTATTTAGGAAAAGTAATATTTGGAAACTTTTTTTTATTAGATGTTGATAAAAAATATAATTGGACGCACATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333 55555555555555555555555 444444444444444444444444444 111111111111111 11 222222222222 111 11 111 11111111111111 111 11 1111 111111 5555555555555555555555555555555 1111111 11 1111111111111111 11111111111 11 111111 11111111 1 1111 11111111 77777777777777777777777777777777777777777777777777777777777777777 111 22222222222 111 11111 1111 11 11
lowQualScore : 9999 8 4 4 4 8 5 4 44444444444444444444444444444444444444444444444444444444444444444 4 4 8 4 4 4 77777777777777777777777 5 66 000000000000000000000000000 666666666666666 88888 4 55 4 8888 77 4 6666 4 2 55 4 777 111111111111 000 3 3 4 4 4 4 4 99999 0 00 4 111 55 55 3 4 33333333333333 2 4 0 111 4 4 4 4 88 0 0 33 4 4 4 2222 4 5 4 4 4 4 4 4 55 777 4 4 0 111111 4 8888888888888888888888888888888 4444444 777 4 4 4 4 4 99 55 33 4 4 888 4 0 6666666666666666 4 66666666666 2 00 3 0 55 555555 55 4 22222222 8 4 3 66666 3 7 2 3 7 3 55 3 99 0 3 6 3333 55 1 55 99 4 4 3 3 3 5555 3 3 3 99999 3 3 3 4 9999 55 7 3 3 666 3 11111111 55 77777777777777777777777777777777777777777777777777777777777777777 99 55 8 111 777 99 4 11111111111 0 000 55555 3 1111 3 88 3 3 66666666 55 3 3 00 88 33 666 55 3 3 88 3 3 3 55 3 55 3 3 666 55 4 777777 66 4 4 777 66 66 5 0 0
lowQualScore : .... . . . . . . . ................................................................. . . . . . . ....................... . .. ........................... ............... ..... . .. . .... .. . .... . . .. . ... ............ ... . . . . . . . ..... . .. . ... .. .. . . .............. . . . ... . . . . .. . . .. . . . .... . . . . . . . . .. ... . . . ...... . ............................... ....... ... . . . . . .. .. .. . . ... . . ................ . ........... . .. . . .. ...... .. . ........ . . . ..... . . . . . . .. . .. . . . .... .. . .. .. . . . . . .... . . . ..... . . . . .... .. . . . ... . ........ .. ................................................................. .. .. . ... ... .. . ........... . ... ..... . .... . .. . . ........ .. . . .. .. .. ... .. . . .. . . . .. . .. . . ... .. . ...... .. . . ... .. .. . . .
lowQualScore : 4444 9 4 4 4 9 0 0 55555555555555555555555555555555555555555555555555555555555555555 0 0 0 0 0 0 22222222222222222222222 7 99 000000000000000000000000000 111111111111111 44444 0 55 0 6666 55 0 1111 0 5 55 0 000 999999999999 000 6 6 0 0 0 0 0 11111 7 33 0 444 00 00 6 0 88888888888888 4 4 3 333 0 0 0 0 88 8 8 55 0 0 0 5555 0 7 0 0 0 0 0 0 55 000 0 8 8 111111 0 0000000000000000000000000000000 8888888 000 0 0 0 0 0 55 55 55 0 0 777 0 8 8888888888888888 0 44444444444 5 44 2 9 55 000000 55 0 44444444 0 0 6 88888 6 3 8 6 3 6 00 6 55 0 3 7 5555 99 3 55 55 0 0 6 6 6 5555 6 6 6 11111 6 6 6 9 0000 00 3 6 6 444 6 11111111 00 77777777777777777777777777777777777777777777777777777777777777777 55 55 0 000 000 55 0 33333333333 8 888 55555 6 4444 6 22 6 6 55555555 00 6 6 00 66 66 444 99 6 6 66 6 6 6 00 6 00 6 6 444 55 0 333333 11 0 0 000 11 99 0 2 5
consensus : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GATTT--A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTGTTTGC------GC------------TCCTCTCTC-TC--TCTCTCNTCT--TC---------TCT-CC----AACG-----ATA-CG-T--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCTCTCT-CTC-TGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAAT-AGG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
Reference ( family-4044 ) : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GATTT--A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTGTTTGC------GC------------TCCTCTCTC-TC--TCTCTCNTCT--TC---------TCT-CC----AACG-----ATA-CG-T--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCTCTCT-CTC-TGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAAT-AGG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|1 : CCCCCTT----CTCGT-CTC-TCTC-TACATTA-GTTT-------TTT--ACCATATCA---A----------------GA-----AGTAAACGTTCGGTGCACATG-T-CTACCT-ACATGT-ATCA-TTTAGCGTTTTT
gi|1 : CTCCTCTT----CTC-T-CTCCTCTCGTC-ATCG-TTTTTTTTAGAATT--A-------ATGAA----------------GA-----AAAAGTTCGGCTGCACTTATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTCTTCG---------------------TCCTCTCTCTTC--TCGCTC-TCT--GT---------TCC-CCAT--AACG-----AT-----T--GT---T-CAAA--TTTAG-TATATGTT--TATGGAC-TTAA-AAAATTAAATTTAT--AT-CT---TTAGAGAGTCTTGTGATGTT-TTT-GAA-GCATAT-AT-AAT-GG-----tgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctactacatgtatcatttagcgtcttcgtcctctctcttctcgctctctgttccccataacgattgttcaaatttagtatatgtttatggacttaaaaaattaaatttatatctttagagagtcttgtgatgtttttgaagcatatataatggccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|1 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatTACATGTAT---C--------A-TTTAGCGTCTTCGTCCT---CTCTCTTCTCGCTCTCTGTTC-CCCATAACG-AT-----TGT-TCAAATTTAGTATATGTTT-ATGGACTT-AAAAAATT----AAATTTATAT-CTTTA-G-A-GAGT-CTTGTGA-TGTTTTTGAAG-C--ATATATAATGGCCAT---AATACCTATGT--TTAT-GGCACGCGCAGCCGTAACACG-----------AT-----A-TGGGTCA-TTGT-ACGGGA-CTGGTTTATTCC--GAGT-AGGTAGTGAG-AAGTAAATATATA------TCTCTATAGT-AATTTTCGT--AGAT------ACAATT--TTTTTTT-TTAG-ATGACCAAA-CAACA-TTA--TCTTGAA-G-AA---C-TAGAA-ACTAATATGAAATAGA-TTT--TAA-A-GAC-ACAC-ACTAAATATTGTG-AAATAA-TTGTATACC--AGTAATC-T-ATGCA-ATTA-ATA-CATA----GTTC-TCGTATG-AT-----TACC-GT-C-A--------------TCG-T-AACAATTGTT---T-TG--A--A--TGCAG--A-------T-A------------------------------------TTCC--ACA----------TCATGCCTTGTG--GAA-T---TT---T--ATTTTA-A---T-------TTAATG-AAA-----TTT-TTT---A-CCTCTCAT-AACT-T--C---CA--TATTTTT-T--GATG--CGCAC--AA---TACATAGA-TCTAAG-GTTATTTCTTC-AGAT-G-TTTT--T--CCC--CAAA-GTGGGAGG---TGCCTG-CA-T-A--T-ACAT------T-GCGCTTTACGGAATACGGACGTGGACTATAccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|10 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctacC--TCTCTCTTCT--TC---------CCTACCGAATAATG-----GCA-GG-T--GTATAC-T-AA--TCGAG-AATATG-TATTACG-AC-TT-A-AAGACAGAA-T-ATAATT-CTGTTTTT---ATTC----GA---T-TTT-AAA-GAC-CT-AT-ATT-GG-----GTT--GCATCATACATGTAT---C--TACTACA-TTTTGCA-CGCTCTTCT---CTACGTCCTCTCTCTC-CTCTTCTC-TAATGCATGAC-GTTT-TCAAATTTAGGAA-TGTT--ATG-ACTT-AAAAA-TT----AAATT-GTTT-CTTTA-GTAGGATC--TTGTGAATG-TTT-GAAG-C--A-ATATAC----CAT-TC-ATACTTG-TT--TAAT-GC---------------CA-G-----------CTTAACAA-TGG---A-TT-T-ACTG-A-TTGT-TTAT--C--GA-T---GTAC---G-A-GTAA----------------------T-A-----TGT---AATTGAT--AC-ATT--TTTTTTT------ATGA--CA---AA-A-T----TATT-AA-GAAA---A-TTAGATACT-A-ATGAA-TA-A-TAT----A-A-CAA-ACAC-A-T-CATA-T-T--AAGTAA-ATAaacgac
gi|11 : -AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTA--TAA-AACAC-ACAC-A-TACATATTCT--AAGTAA-ATATATACA--TGTA--C-TTATGCA-ATTA-ATA-CATA--C-CTTTCTTTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AATA-TCGTT---T-CG-AA--T--TGCAG--AT---AAAG-AGC-A---GGAAAAAATCCAATAAA------------TTTT--A-T----------TCATC-CCTGTG--TAA-TC--TT---T--ATTTTA-G---T-------TT-----AAATTTTTTTT-TT----A-CA-CTCAT-T-CT-T--C---CA--T-TTTTTGT--GTTG--CGCACCAAA---TACATAGG-ACTAAG-GTT-TTTC--CAAGAT-GTTTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CACC-A----ACACAAAAG-T-GCGC---AC--AATAC--ATG-AGATTTTACG
gi|12 : aA-ATAG-ATA-TATAATC-TTTT-TCCC-CG-ATGTGAATACC-GT-C-AGTGTCG--C-CA--GCG-C-AAGA-TCGTT---T-CG-GA--GATTGCAG--AT---AAAG-AGT-A---GGGA----------AAA------------TGTCT-A-ACACATTGTTTTCAT--CCTGTGTTATA-T---TT---T--ACTTTA-G---T-------TAAA-A-AAAATT--TTT-TT----A-CA-CTCATAT-CT--------CA--T-TTTTT-T--GATG--CGCAC--A----TACATAGG--CTAAG-GTT-TTTTT-C-AGCT-G-TTTT--TC-CCC----AA-GTGGGGGGCCGTGC--GGCATT-G--T-ACAC--ACG-T-GCGC---GC--AATA
gi|13 : gtaagtatacttcttaggtaggttC-AC-C-A-TGCGTATG-T--AAGTAA-ATATATACA--TGTAA-C-T-ATGCA-ATTA-ATA-CATA--CCGGTT-TCTT-TG-AT-----TCCG-GTGCGAGTGTCG--CGCAAATCGGT-CAGA-TTGTTGGTT-CG-AA--T--TGCAG--GGGATAAAG-AGC-A---GG------------AAAAATCCAATAAATTTTT--A-T----------TCAT--C-TGTG--TAA-T---TT---TTTATTTTCCG---T-------GTAA---AAA-----TTT-TTGTTTA-CA-CTCAT-T-CT-T--TGCGCG--T-TTTTT-TTGGATGG-CGCAC--GAGAGTACATAGG---CAAGCGTT-TTTC--G-ACATCG-TTTT--TTGCCC--CAAA-GTGGGCGG---gtggagactctta
gi|14 : CCCCCCTT----CTCGT-CTC-TCTC-TACATTA-GTTT-------TTT--ACCATATCA---A----------------GA-----AGTAAACGTTCGGTGCACATG-T-CTACCT-ACATGT-ATCA-TTTAGCGTTTTTg
gi|16 : ttgtgaatattttggattcttgaaagaaatcttataacaggtttcaacactgccgctttctccttctctcctcgtctcttctctctctctctctctcgtctattttttaataaagatataataatgacaggttacacatgcc-AAA-----TTT-GC----A-CA-CCCAT-T-TTGT--C---AA--A-TTTG-----GATG--CGCAT--GA---TACATAGG-ACTAAA-GTT-TTTT--T-TATT-A-TTAT--TT-GTTAATAAATGTTTGGGA---TGT--G-TGTT-A--T-ACAC--GAG-T-GCGC---Atgtgc
gi|18 : ----GA---T-TTT-AAAAGAA-TT-AT-ATT-GG-----GTTT--CA-TATACATGTATCTAC--TAT--CA-TTTTG
gi|19 : AG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|2 : CCCCTTT----CTC-T-TTC-TCTC--A-ATTA-TTTT-----GATTTG-A-------A---A----------------GA-----A----------------C-TC-C-TTAC-T-AAATG---TTA-TTTAGTGTGTTTGC------Gt
gi|2 : gC----AACG-----AT--------TT---T-C-GA--TTTAG-GAAATG-C--TAC--AA-TT-T-GAAATTGAA-TGAT--TT-CT---T-----ACT-----GA---T-TT---AA-GAA-AT-AT-ATT-GG-----GGTTTGCA--ATAC-TGTAT---C--TAT--CATTTTTGTG-TGCCTCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|2 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGATG-AT-A--GTTT-TCA--TTTAGGAA---TC--GTA-ATT---AAAA-TT----AA-TT-GTCT-CTTTACGTA-GATA-TT-GTGAATGTTTT-GAAG-CGAATATATACT---CAT-TCGA--CTTGTT----AATCG----------------CA-G-----------AT-------TGG---A-TT-T-ACTG-A-T------AT--CC-GA-T-AGGTAC--AGTACGCAAATA---AATAGGCC-----TAGT-A-----CAT--AA--T--CTA-CAATT--TTTT-------G-ATGA--A---CAA---TT---TATT-AA-G-AA-----TTAG----CAA-ATAAA-TA-AATTT--TAA-A--AC--CAC-C-TACATATT-T--A-GTAA--TATATA-A--TACA--C-T-ATGCA-ATTAGATA-CAT-----GTTC-T-TT-TG-AT-----TACC-G--C-AATGTT---T-CA--TCG-T-AACA-TTG-T---T-CG-G---A--T-CAG--A----AAATAAGG-A---GG------------AAA------------ATTCCAA-A----------TCAT--CCTGTG--GAATT---TT---T--ATTTTA-G---G-------TT-----GAA-----TTT-TT----A-CC-CTCAT-T-CT-T--C---C-----CTTTT-T--GATGACTGCAC--AA---TACAT-GG-A--AAG-GTT-TTTC--C-AGA--G---TT--TC-CCC--CAAA-GT-GGGGA---TGC--G-CATTGG--T-ACAT--AAGCT-GCGC---AC--AATAC--ACG-GGA-TCTACGtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|3 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GA-------------A---A----------------GA-----A----------------CATG-T-CTAC-T-GCATGT-ATCA-TTTAGCGTGTCTGCTCGNNNNN------------NNNNNNNNN-NN--NNNNNNNNNN--NN---------NNN-NN----AACG-----ATA-CGAT--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTA----C--TAT--CA-TTTTGCG-CGCCCCCCN---NNNNNNNNNNNNNNNNNNNNN-NNN-NGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ATTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-A--G-AA---C-TTAGA-ACTAA-AT-AA-TA-A-TTT--TAA-A-CAC-ACACAA-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGTA-ATTA-ATA-CCTA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-GACA-TTGTT---T-CG-GA--A--TGCAG--A----AAAT-AGG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---G-------TTAA-G-AAA-----TTT-TT----A-CC-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TT-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--TAACAT--AAG-TGGCGC---AC--AATAC--ACG-GGACTATACGG
gi|4 : CCCCTTTCTCCTC-T-CTC-TCTC-TA-ATGATTTTT-----GATTTTGA-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCATTTTAGCGTGTTTGC---------------------TCTCTCTC-TC--TCTCTCATCTCATC---------TCT-CG----AACG------TA-CG----TT---T-C-GA--TTTAG-GAAATG-C---AC--CCATT-T-GAAATTGAA-TGA---TT-CT---TT----ACTC----GAT--T-TTT-AAA-GAA-AT-ATAATT-GG-----G-TTTGCA-CAT-CATGTAT---T--TAT--CA-AATTGTG-CGCCCCCCC---CCCCCCTCTCTCTCTCTCTCT-CTC-TGATA----AC-GTTTCTCAA-TTTAGGATATGTT--A-G-ATTT--AAAA-TT-----AATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGAT-CTTGTTTAATAAT-G----------------CA-G-----------AT-----ATTGG---A-TT-T-ACTG-AGTTG--TTAT--C--GA-TAAGGTAA--CG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACTAA----T--TTTTTTT-T--GAATGA--AAA-CAA-A-TCA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A--ACAACAC-A-TACATATT-T--AAGTAA-AT-TATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCGTCC-CA--TCG-TAAACA-TTGTT---T-CG-GA--A--TGCAG--A----AAAT-AGG-----GA------------AAA------------TCCA--A-A----------TCAT--CCTGTG--GAATT---TT---T--ATTTTA-G---CCTTTAGGTTAA-G-AA-------TT-TT----A-CC-CTCAT-T-CT-TTAC---CATTT-TTTTT-T--TATG--CGCAC--AA---TACATAGGAACT-AG-GTT-TTT---C-AGAT-G-TTTT--TC-CCC--C-AA-GTTGGGGG---TGC--G-CATT-G--T-A
gi|5 : T----CTC-TTCTC-TCTC-TA-ATGA-TTTTTTT--GATTTTGA-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGAGTG---------------------------CTCTCCT-TC--TCTCTCTTCT--T--------------------AACG-----ATA-CG-T--TT-----C-GA--TTTAG-AAAATG-T--TACC-AC-TA-T-GAAATTAAA-TGAT--TT-CT---TTA----CTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTT--GCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCC--------------TCTC----TCTCTCT-CTC-TGACA-AT-AT-G-TT-TCAA-TTTA-GAAATGTT--ATG-ATTT-AAAAA-TTTTTAAAATT-GTTT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTG-TT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACT-ACAATT--TTTTTTT-T----ATGA--AAA-CAA-A-------AAT-AC-G-AA---C-TTAAA-ACTA-------------------AA-A-CAC-ACAC-A-TACATATT-C--AAGTAT-AAATATACATTTATA--C-T-ATGCA-ATTA-ATA-CATA--C--TTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--CCG-T-AAGA-TCGTT---T-TG-AA--T--TGCAGATA----AAAG-AGGCA---GGAAAAATCCAAT-AAA------------TTTT--A-T----------TCAT--CCTGTG--TAA-T---TT---TC-ATTTTA-G---TA------TAAA-A-AAA-----TTT-TT----A-CA-CTCAT-T-CT-A--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CACA-A--T-ACAC--AAG-T-GCGC---AC--AATAC--ATG-AGATTTTAC
gi|6 : tctcC------------TTCTCTCTC-TCTTTCTCTCATTT--TTTAAAAGATATCT-AT----AACGGGTTTACA-CA-TGGTC---T-N-NN--NNNNN-NNNNNN-N--NNN--NN-NN-N-NNNNNNNNN-TCAT--TT--T---TTA---A--------A---T-ATA-GAA-GCA-AA-AC-ATTCGGCACATGTCTTAC----TACATGTAT---CATTAG--CA--TTTGTG------CTCT---CTC---TCTCTCTC-CTCTCT-CTC----TG-AT-AC-GTTT-TCAA-TTTAGT-AATGTTA-ATG-ACTT-AAAAA-TTA---AAATT-ATAT-CTTT--GTA-TATTACTTGTGAATGTCTT---AGCC--ATATATACT---CAT-TCAA-ACTTG--T--TAAT-G----------------CA-GCCGTTTAAACAAT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--CTGAA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTAA-----TGT--CCA--GA--AACAA----TTTTTGT-T--A-ATGA--AAA-CAA-A-TTAATTATT-AA-G-AA---CGTTAGA-ACT-A-AT-AA-TA-A-TCT--TAAGA-CACAACAC-ATTACATATTATA-AAATAACAT-TAAACA--TATA--CAT-ATGCA-ATT--ATATCATA--C-GTTT-ACTA-TG-AT-----TACC-GT-C-ATT---------A--TCG-T-AACA-ATGTT---T-CGTGAACA--TGCA---A----GACT-------------------------A------------TTTCCAA-A----------TCAT--CCTATG--GAC-T---TTTAAT--ATTTTA-GAGTT-------TTAA-GAAAA-----TTTGTT----ACCT-CTC-T-T-TT-T--C---CA--T-TTTTT-TTATATG--CGCACCAAA---TACATA-G-ACTAAG-GTT-TTTC--C-AG-T-G-TTTTACTC-CCC--CAAA-GT-GGTGG---TGC--G-CATT-G--T-ACAT--GAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|7 : CCCCCTTT----CTT-C-TTC-CTTC-TC-AT----TTT-----G-TTT--A-------A---ATATAGAAGAAAACGTCGAGTGGCA----------------CATG-TTCTAC-TTACATGTTATCA-TTTAGC--GTTTGT------GC------------TCCTTTCTC-TC--TCTCTC------TC---------TCT-CC------TG-----ATACCG-T--TT---T-C-AA---TTAG-TAAATG-T--TATA-AC-TT-TAAAAATTAAA-TTAT--AT-CT---TTA---G-TA----GA---T-CTT-
gi|7 : tttaaaaattatctaaacaggcttacacatgg-----GTTCT--A-CTTACATGT--------TAT--CA-TTTAGCG-T------TTGTGCTCCTTTCTCTCTCTCTCTCT-CTC-C--TG-AT-ACCGTTT-TCAA-TT-AGTAAATGTT--ATA-ACTTTAAAAA-TT----AAATT-ATAT-CTTTA-GTA-GATC-TTT-TGAATGC----------------AT-CT---CAT-TCAATACTTGTTT--AATT-G----------------CA-GCCGTTAAACG-AT-----A-TG----A-GT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC---G-ACGTAAATA---A------T-----TAGT-A-----TGTCAGAATT-ACCAAT--TT--TTTTTTT-T--A-ATGA--AGA-CAA-AATTA--TATT-AAAG-AA---C-TTAGA-ACTAA-ATGAA-TAGA-TTT--TAA-A-GACCACAC-A-TACATATT-TTTAA-TAA--TATATA-A--TATA--C-T-ATGCAGATTA-ATA-CATA--C-GTTT-CTAT-TGCAT-----TACCCGT-C-ATTGCCG--T-CA--TCGCT-AACA-ATGTT---TTCGCGA--A--TGCAG--A-------T-A------------------------------------TTCC--A-A----------TCAT--CCTATT--GGA-TATTTT---T--ATGTTA-G---T-------TTAA-G-AA------TTT-TT----A-C--CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--TGCACG-AA---TACACAGG-ACTAAG-GTT-TTTT--C-AGAT-G-TTTT--CC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-GGCC-ACAC--AAG-T-GCGC---CC--TATAC--ACG-ATACTATACGttgaatgcatctcattcaatacttgtttaattgcagccgttaaacgatatgagttactgattgttatcgataggtacgacgtaaataattagtatgtcagaattaccaatttttttttttaatgaagacaaaattatattaaagaacttagaactaaatgaatagattttaaagaccacacatacatatttttaataatatataatatactatgcagattaatacatacgtttctattgcattacccgtcattgccgtcatcgctaacaatgttttcgcgaatgcagatattccaatcatcctattggatatttttatgttagtttaagaatttttacctcattcttccatttttttgatgtgcacgaatacacaggactaaggttttttcagatgttttccccccaaagtggggggtgcgcattggccacacaagtgcgccctatacacgatactatacg
gi|8 : tttaaaaattatctaaacaggcttacacatggccccctttcttcttccttctcattttgtttaaatatagaagaaaacgtcgagtggcacatCCCCTTT----CT--T-CTC-TCTC-TA-ATGA-TTTTT----GATTTG-A-------A---A----------------GA-----A----------------CAAT-T-CTAC-T-ACATGT-ATCA-ATTAGTGTGTTTGT------G
gi|8 : ACG-----ATA-CG-T--TT---TTC-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TTACT---TTA----CTC----GG---T-TTTTAAA-GAA-ATTAT-ATT-GG-----GTT--GCA-CATACAT-TAT---C--TAT--CA-TTTTGCG-CGCNNNNNN---NNNNNNNNNNNNNNNNNNNNN-N----GATG-AT-AC-GTTT-TCA--TTTAGGAAATGTTTTAT--ATTT-AAAAG-TT----AAATT-GTCTTCTTTA-GTA-GAAT-TTGGT-AATGCTTT-GAAC-A--ATATATACT---CAT-TCGATACTTGTT----AAT-G----------------CA-G-----------AT-----A-TGG---AATT-T-ACTG-A-TTG--TTAT--A--TA-G-AGGTAC--AG-ACGCAA-TA---A------T-----TAGT-A------AT--AAATTGACTTACAATTGTTTTTTTTAT--G-ATGA--AAAACAA-A-ATA--TATTTAA-G-AAAGAC-T-AGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATA-ATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT--CTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAAT-AGG-AGTGGG------------AAA------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgatacgtttttcgatttaggaaatgctacactttgaaattgaatgatttactttactcggtttttaaagaaattatattgggttgcacatacattatctatcattttgcgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatacgttttcatttaggaaatgttttatatttaaaagttaaattgtcttctttagtagaatttggtaatgctttgaacaatatatactcattcgatacttgttaatgcagatatggaatttactgattgttatatagaggtacagacgcaataattagtaataaattgacttacaattgttttttttatgatgaaaaacaaaatatatttaagaaagactagaactaaatgaataattttaaacacacacatacatatttaagtaaataatacatatactatgcaattaatacatacgtttctttgattaccgtcaatgtcgtcatcgtaacattgtttcggaatgcagaaaataggagtgggaaaa
gi|9 : cccctttcttctctctctaatgatttttgatttgaaagaacaattctactacatgtatcaattagtgtgtttgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGA-TTTT-----GA-------------A---A----------------GA-----A----------------AATGAT-CTA--T-ACATGT-ATCA-TTTAGCCTGTTTGT------GCGCATNNNNNNNNNNNNNNNNN-NN--NNNNNNNNNN--NN---------NNN-NN----NATG-----AT--CA-C--TT---T-C-GAAATTTAATGAAATG-T--TCG--AC-TT-T--AAATTGAA-TGAT--TT-TT---TTA----TTC----GA---TATTT-AAA-GAA-CT-AT-ATT-GG--------TTGCA-CATACATGTATTA-C--TAT--CA-TTTTGCA-CGCNNNNNN---NNNNNNNNNNNNNNNNNNNNN-NN---AATG-AT-AC-GTTT-TCAA-TG-AGAGAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GT-T-CTTTA-GT--GATC-TTTGT--ATGCTTT-GAAG-C--ACATATACT---CATATC-ATACT-GTTT---AAT-G----------------CA-GCCTTAAACG--AT-------TGG---A-TT-TTACTG-A-TTT--TTAT--CC-GA-T-AG-TAC--AG-ACGTAAATA---A------T------AGT-A------------ATTGAC-AACAAAT--TTTTTTT-T--T-AT-A--AAA-CAATA-TTA--TATT-AA-G-AA---C-TTAGA-ACTAATATGAA-TA-A-TTTTATAA-A-AAC-AAAC-A-TACATATT-T--a
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTGTGAATTAAGTTGGAGGTCTTTGAAAGAAAATCTTATATACGTGGTTACAGCGTGCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTAAAAGATATCTATAACAGGTTACACATGCCCCCTTCTCTCCTTCTCATTTTTTTTAAATATAGAAGAAAACGT
Unaligned ( gi|17 ): TTAATGTAATATTTTCAATTATTTAGGAAAAGTAATATTTGGAAACTTTTTTTTATTAGATGTTGATAAAAAATATAATTGGACGCACATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333 55555555555555555555555 444444444444444444444444444 111111111111111 11 222222222222 111 11 111 11111111111111 111 11 1111 111111 5555555555555555555555555555555 1111111 11 1111111111111111 11111111111 11 111111 11111111 1 1111 11111111 77777777777777777777777777777777777777777777777777777777777777777 111 22222222222 111 11111 1111 11 11
lowQualScore : 9999 8 4 4 4 8 5 4 44444444444444444444444444444444444444444444444444444444444444444 4 4 8 4 4 4 77777777777777777777777 5 66 000000000000000000000000000 666666666666666 88888 4 55 4 8888 77 4 6666 4 2 55 4 777 111111111111 000 3 3 4 4 4 4 4 99999 0 00 4 111 55 55 3 4 33333333333333 2 4 0 111 4 4 4 4 88 0 0 33 4 4 4 2222 4 5 4 4 4 4 4 4 55 777 4 4 0 111111 4 8888888888888888888888888888888 4444444 777 4 4 4 4 4 99 55 33 4 4 888 4 0 6666666666666666 4 66666666666 2 00 3 0 55 555555 55 4 22222222 8 4 3 66666 3 7 2 3 7 3 55 3 99 0 3 6 3333 55 1 55 99 4 4 3 3 3 5555 3 3 3 99999 3 3 3 4 9999 55 7 3 3 666 3 11111111 55 77777777777777777777777777777777777777777777777777777777777777777 99 55 8 111 777 99 4 11111111111 0 000 55555 3 1111 3 88 3 3 66666666 55 3 3 00 88 33 666 55 3 3 88 3 3 3 55 3 55 3 3 666 55 4 777777 66 4 4 777 66 66 5 0 0
lowQualScore : .... . . . . . . . ................................................................. . . . . . . ....................... . .. ........................... ............... ..... . .. . .... .. . .... . . .. . ... ............ ... . . . . . . . ..... . .. . ... .. .. . . .............. . . . ... . . . . .. . . .. . . . .... . . . . . . . . .. ... . . . ...... . ............................... ....... ... . . . . . .. .. .. . . ... . . ................ . ........... . .. . . .. ...... .. . ........ . . . ..... . . . . . . .. . .. . . . .... .. . .. .. . . . . . .... . . . ..... . . . . .... .. . . . ... . ........ .. ................................................................. .. .. . ... ... .. . ........... . ... ..... . .... . .. . . ........ .. . . .. .. .. ... .. . . .. . . . .. . .. . . ... .. . ...... .. . . ... .. .. . . .
lowQualScore : 4444 9 4 4 4 9 0 0 55555555555555555555555555555555555555555555555555555555555555555 0 0 0 0 0 0 22222222222222222222222 7 99 000000000000000000000000000 111111111111111 44444 0 55 0 6666 55 0 1111 0 5 55 0 000 999999999999 000 6 6 0 0 0 0 0 11111 7 33 0 444 00 00 6 0 88888888888888 4 4 3 333 0 0 0 0 88 8 8 55 0 0 0 5555 0 7 0 0 0 0 0 0 55 000 0 8 8 111111 0 0000000000000000000000000000000 8888888 000 0 0 0 0 0 55 55 55 0 0 777 0 8 8888888888888888 0 44444444444 5 44 2 9 55 000000 55 0 44444444 0 0 6 88888 6 3 8 6 3 6 00 6 55 0 3 7 5555 99 3 55 55 0 0 6 6 6 5555 6 6 6 11111 6 6 6 9 0000 00 3 6 6 444 6 11111111 00 77777777777777777777777777777777777777777777777777777777777777777 55 55 0 000 000 55 0 33333333333 8 888 55555 6 4444 6 22 6 6 55555555 00 6 6 00 66 66 444 99 6 6 66 6 6 6 00 6 00 6 6 444 55 0 333333 11 0 0 000 11 99 0 2 5
consensus : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GATTT--A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTGTTTGC------GC------------TCCTCTCTC-TC--TCTCTCNTCT--TC---------TCT-CC----AACG-----ATA-CG-T--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCTCTCT-CTC-TGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAAT-AGG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
Reference ( family-4044 ) : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GATTT--A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTGTTTGC------GC------------TCCTCTCTC-TC--TCTCTCNTCT--TC---------TCT-CC----AACG-----ATA-CG-T--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCTCTCT-CTC-TGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAAT-AGG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|1 : CCCCCTT----CTCGT-CTC-TCTC-TACATTA-GTTT-------TTT--ACCATATCA---A----------------GA-----AGTAAACGTTCGGTGCACATG-T-CTACCT-ACATGT-ATCA-TTTAGCGTTTTT
gi|1 : CTCCTCTT----CTC-T-CTCCTCTCGTC-ATCG-TTTTTTTTAGAATT--A-------ATGAA----------------GA-----AAAAGTTCGGCTGCACTTATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTCTTCG---------------------TCCTCTCTCTTC--TCGCTC-TCT--GT---------TCC-CCAT--AACG-----AT-----T--GT---T-CAAA--TTTAG-TATATGTT--TATGGAC-TTAA-AAAATTAAATTTAT--AT-CT---TTAGAGAGTCTTGTGATGTT-TTT-GAA-GCATAT-AT-AAT-GG-----tgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctactacatgtatcatttagcgtcttcgtcctctctcttctcgctctctgttccccataacgattgttcaaatttagtatatgtttatggacttaaaaaattaaatttatatctttagagagtcttgtgatgtttttgaagcatatataatggccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|1 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatTACATGTAT---C--------A-TTTAGCGTCTTCGTCCT---CTCTCTTCTCGCTCTCTGTTC-CCCATAACG-AT-----TGT-TCAAATTTAGTATATGTTT-ATGGACTT-AAAAAATT----AAATTTATAT-CTTTA-G-A-GAGT-CTTGTGA-TGTTTTTGAAG-C--ATATATAATGGCCAT---AATACCTATGT--TTAT-GGCACGCGCAGCCGTAACACG-----------AT-----A-TGGGTCA-TTGT-ACGGGA-CTGGTTTATTCC--GAGT-AGGTAGTGAG-AAGTAAATATATA------TCTCTATAGT-AATTTTCGT--AGAT------ACAATT--TTTTTTT-TTAG-ATGACCAAA-CAACA-TTA--TCTTGAA-G-AA---C-TAGAA-ACTAATATGAAATAGA-TTT--TAA-A-GAC-ACAC-ACTAAATATTGTG-AAATAA-TTGTATACC--AGTAATC-T-ATGCA-ATTA-ATA-CATA----GTTC-TCGTATG-AT-----TACC-GT-C-A--------------TCG-T-AACAATTGTT---T-TG--A--A--TGCAG--A-------T-A------------------------------------TTCC--ACA----------TCATGCCTTGTG--GAA-T---TT---T--ATTTTA-A---T-------TTAATG-AAA-----TTT-TTT---A-CCTCTCAT-AACT-T--C---CA--TATTTTT-T--GATG--CGCAC--AA---TACATAGA-TCTAAG-GTTATTTCTTC-AGAT-G-TTTT--T--CCC--CAAA-GTGGGAGG---TGCCTG-CA-T-A--T-ACAT------T-GCGCTTTACGGAATACGGACGTGGACTATAccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|10 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctacC--TCTCTCTTCT--TC---------CCTACCGAATAATG-----GCA-GG-T--GTATAC-T-AA--TCGAG-AATATG-TATTACG-AC-TT-A-AAGACAGAA-T-ATAATT-CTGTTTTT---ATTC----GA---T-TTT-AAA-GAC-CT-AT-ATT-GG-----GTT--GCATCATACATGTAT---C--TACTACA-TTTTGCA-CGCTCTTCT---CTACGTCCTCTCTCTC-CTCTTCTC-TAATGCATGAC-GTTT-TCAAATTTAGGAA-TGTT--ATG-ACTT-AAAAA-TT----AAATT-GTTT-CTTTA-GTAGGATC--TTGTGAATG-TTT-GAAG-C--A-ATATAC----CAT-TC-ATACTTG-TT--TAAT-GC---------------CA-G-----------CTTAACAA-TGG---A-TT-T-ACTG-A-TTGT-TTAT--C--GA-T---GTAC---G-A-GTAA----------------------T-A-----TGT---AATTGAT--AC-ATT--TTTTTTT------ATGA--CA---AA-A-T----TATT-AA-GAAA---A-TTAGATACT-A-ATGAA-TA-A-TAT----A-A-CAA-ACAC-A-T-CATA-T-T--AAGTAA-ATAaacgac
gi|11 : -AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTA--TAA-AACAC-ACAC-A-TACATATTCT--AAGTAA-ATATATACA--TGTA--C-TTATGCA-ATTA-ATA-CATA--C-CTTTCTTTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AATA-TCGTT---T-CG-AA--T--TGCAG--AT---AAAG-AGC-A---GGAAAAAATCCAATAAA------------TTTT--A-T----------TCATC-CCTGTG--TAA-TC--TT---T--ATTTTA-G---T-------TT-----AAATTTTTTTT-TT----A-CA-CTCAT-T-CT-T--C---CA--T-TTTTTGT--GTTG--CGCACCAAA---TACATAGG-ACTAAG-GTT-TTTC--CAAGAT-GTTTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CACC-A----ACACAAAAG-T-GCGC---AC--AATAC--ATG-AGATTTTACG
gi|12 : aA-ATAG-ATA-TATAATC-TTTT-TCCC-CG-ATGTGAATACC-GT-C-AGTGTCG--C-CA--GCG-C-AAGA-TCGTT---T-CG-GA--GATTGCAG--AT---AAAG-AGT-A---GGGA----------AAA------------TGTCT-A-ACACATTGTTTTCAT--CCTGTGTTATA-T---TT---T--ACTTTA-G---T-------TAAA-A-AAAATT--TTT-TT----A-CA-CTCATAT-CT--------CA--T-TTTTT-T--GATG--CGCAC--A----TACATAGG--CTAAG-GTT-TTTTT-C-AGCT-G-TTTT--TC-CCC----AA-GTGGGGGGCCGTGC--GGCATT-G--T-ACAC--ACG-T-GCGC---GC--AATA
gi|13 : gtaagtatacttcttaggtaggttC-AC-C-A-TGCGTATG-T--AAGTAA-ATATATACA--TGTAA-C-T-ATGCA-ATTA-ATA-CATA--CCGGTT-TCTT-TG-AT-----TCCG-GTGCGAGTGTCG--CGCAAATCGGT-CAGA-TTGTTGGTT-CG-AA--T--TGCAG--GGGATAAAG-AGC-A---GG------------AAAAATCCAATAAATTTTT--A-T----------TCAT--C-TGTG--TAA-T---TT---TTTATTTTCCG---T-------GTAA---AAA-----TTT-TTGTTTA-CA-CTCAT-T-CT-T--TGCGCG--T-TTTTT-TTGGATGG-CGCAC--GAGAGTACATAGG---CAAGCGTT-TTTC--G-ACATCG-TTTT--TTGCCC--CAAA-GTGGGCGG---gtggagactctta
gi|14 : CCCCCCTT----CTCGT-CTC-TCTC-TACATTA-GTTT-------TTT--ACCATATCA---A----------------GA-----AGTAAACGTTCGGTGCACATG-T-CTACCT-ACATGT-ATCA-TTTAGCGTTTTTg
gi|16 : ttgtgaatattttggattcttgaaagaaatcttataacaggtttcaacactgccgctttctccttctctcctcgtctcttctctctctctctctctcgtctattttttaataaagatataataatgacaggttacacatgcc-AAA-----TTT-GC----A-CA-CCCAT-T-TTGT--C---AA--A-TTTG-----GATG--CGCAT--GA---TACATAGG-ACTAAA-GTT-TTTT--T-TATT-A-TTAT--TT-GTTAATAAATGTTTGGGA---TGT--G-TGTT-A--T-ACAC--GAG-T-GCGC---Atgtgc
gi|18 : ----GA---T-TTT-AAAAGAA-TT-AT-ATT-GG-----GTTT--CA-TATACATGTATCTAC--TAT--CA-TTTTG
gi|19 : AG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|2 : CCCCTTT----CTC-T-TTC-TCTC--A-ATTA-TTTT-----GATTTG-A-------A---A----------------GA-----A----------------C-TC-C-TTAC-T-AAATG---TTA-TTTAGTGTGTTTGC------Gt
gi|2 : gC----AACG-----AT--------TT---T-C-GA--TTTAG-GAAATG-C--TAC--AA-TT-T-GAAATTGAA-TGAT--TT-CT---T-----ACT-----GA---T-TT---AA-GAA-AT-AT-ATT-GG-----GGTTTGCA--ATAC-TGTAT---C--TAT--CATTTTTGTG-TGCCTCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|2 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGATG-AT-A--GTTT-TCA--TTTAGGAA---TC--GTA-ATT---AAAA-TT----AA-TT-GTCT-CTTTACGTA-GATA-TT-GTGAATGTTTT-GAAG-CGAATATATACT---CAT-TCGA--CTTGTT----AATCG----------------CA-G-----------AT-------TGG---A-TT-T-ACTG-A-T------AT--CC-GA-T-AGGTAC--AGTACGCAAATA---AATAGGCC-----TAGT-A-----CAT--AA--T--CTA-CAATT--TTTT-------G-ATGA--A---CAA---TT---TATT-AA-G-AA-----TTAG----CAA-ATAAA-TA-AATTT--TAA-A--AC--CAC-C-TACATATT-T--A-GTAA--TATATA-A--TACA--C-T-ATGCA-ATTAGATA-CAT-----GTTC-T-TT-TG-AT-----TACC-G--C-AATGTT---T-CA--TCG-T-AACA-TTG-T---T-CG-G---A--T-CAG--A----AAATAAGG-A---GG------------AAA------------ATTCCAA-A----------TCAT--CCTGTG--GAATT---TT---T--ATTTTA-G---G-------TT-----GAA-----TTT-TT----A-CC-CTCAT-T-CT-T--C---C-----CTTTT-T--GATGACTGCAC--AA---TACAT-GG-A--AAG-GTT-TTTC--C-AGA--G---TT--TC-CCC--CAAA-GT-GGGGA---TGC--G-CATTGG--T-ACAT--AAGCT-GCGC---AC--AATAC--ACG-GGA-TCTACGtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|3 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GA-------------A---A----------------GA-----A----------------CATG-T-CTAC-T-GCATGT-ATCA-TTTAGCGTGTCTGCTCGNNNNN------------NNNNNNNNN-NN--NNNNNNNNNN--NN---------NNN-NN----AACG-----ATA-CGAT--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTA----C--TAT--CA-TTTTGCG-CGCCCCCCN---NNNNNNNNNNNNNNNNNNNNN-NNN-NGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ATTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-A--G-AA---C-TTAGA-ACTAA-AT-AA-TA-A-TTT--TAA-A-CAC-ACACAA-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGTA-ATTA-ATA-CCTA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-GACA-TTGTT---T-CG-GA--A--TGCAG--A----AAAT-AGG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---G-------TTAA-G-AAA-----TTT-TT----A-CC-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TT-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--TAACAT--AAG-TGGCGC---AC--AATAC--ACG-GGACTATACGG
gi|4 : CCCCTTTCTCCTC-T-CTC-TCTC-TA-ATGATTTTT-----GATTTTGA-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCATTTTAGCGTGTTTGC---------------------TCTCTCTC-TC--TCTCTCATCTCATC---------TCT-CG----AACG------TA-CG----TT---T-C-GA--TTTAG-GAAATG-C---AC--CCATT-T-GAAATTGAA-TGA---TT-CT---TT----ACTC----GAT--T-TTT-AAA-GAA-AT-ATAATT-GG-----G-TTTGCA-CAT-CATGTAT---T--TAT--CA-AATTGTG-CGCCCCCCC---CCCCCCTCTCTCTCTCTCTCT-CTC-TGATA----AC-GTTTCTCAA-TTTAGGATATGTT--A-G-ATTT--AAAA-TT-----AATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGAT-CTTGTTTAATAAT-G----------------CA-G-----------AT-----ATTGG---A-TT-T-ACTG-AGTTG--TTAT--C--GA-TAAGGTAA--CG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACTAA----T--TTTTTTT-T--GAATGA--AAA-CAA-A-TCA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A--ACAACAC-A-TACATATT-T--AAGTAA-AT-TATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCGTCC-CA--TCG-TAAACA-TTGTT---T-CG-GA--A--TGCAG--A----AAAT-AGG-----GA------------AAA------------TCCA--A-A----------TCAT--CCTGTG--GAATT---TT---T--ATTTTA-G---CCTTTAGGTTAA-G-AA-------TT-TT----A-CC-CTCAT-T-CT-TTAC---CATTT-TTTTT-T--TATG--CGCAC--AA---TACATAGGAACT-AG-GTT-TTT---C-AGAT-G-TTTT--TC-CCC--C-AA-GTTGGGGG---TGC--G-CATT-G--T-A
gi|5 : T----CTC-TTCTC-TCTC-TA-ATGA-TTTTTTT--GATTTTGA-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGAGTG---------------------------CTCTCCT-TC--TCTCTCTTCT--T--------------------AACG-----ATA-CG-T--TT-----C-GA--TTTAG-AAAATG-T--TACC-AC-TA-T-GAAATTAAA-TGAT--TT-CT---TTA----CTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTT--GCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCC--------------TCTC----TCTCTCT-CTC-TGACA-AT-AT-G-TT-TCAA-TTTA-GAAATGTT--ATG-ATTT-AAAAA-TTTTTAAAATT-GTTT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTG-TT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CAT--AAATTGACT-ACAATT--TTTTTTT-T----ATGA--AAA-CAA-A-------AAT-AC-G-AA---C-TTAAA-ACTA-------------------AA-A-CAC-ACAC-A-TACATATT-C--AAGTAT-AAATATACATTTATA--C-T-ATGCA-ATTA-ATA-CATA--C--TTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--CCG-T-AAGA-TCGTT---T-TG-AA--T--TGCAGATA----AAAG-AGGCA---GGAAAAATCCAAT-AAA------------TTTT--A-T----------TCAT--CCTGTG--TAA-T---TT---TC-ATTTTA-G---TA------TAAA-A-AAA-----TTT-TT----A-CA-CTCAT-T-CT-A--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CACA-A--T-ACAC--AAG-T-GCGC---AC--AATAC--ATG-AGATTTTAC
gi|6 : tctcC------------TTCTCTCTC-TCTTTCTCTCATTT--TTTAAAAGATATCT-AT----AACGGGTTTACA-CA-TGGTC---T-N-NN--NNNNN-NNNNNN-N--NNN--NN-NN-N-NNNNNNNNN-TCAT--TT--T---TTA---A--------A---T-ATA-GAA-GCA-AA-AC-ATTCGGCACATGTCTTAC----TACATGTAT---CATTAG--CA--TTTGTG------CTCT---CTC---TCTCTCTC-CTCTCT-CTC----TG-AT-AC-GTTT-TCAA-TTTAGT-AATGTTA-ATG-ACTT-AAAAA-TTA---AAATT-ATAT-CTTT--GTA-TATTACTTGTGAATGTCTT---AGCC--ATATATACT---CAT-TCAA-ACTTG--T--TAAT-G----------------CA-GCCGTTTAAACAAT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--CTGAA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTAA-----TGT--CCA--GA--AACAA----TTTTTGT-T--A-ATGA--AAA-CAA-A-TTAATTATT-AA-G-AA---CGTTAGA-ACT-A-AT-AA-TA-A-TCT--TAAGA-CACAACAC-ATTACATATTATA-AAATAACAT-TAAACA--TATA--CAT-ATGCA-ATT--ATATCATA--C-GTTT-ACTA-TG-AT-----TACC-GT-C-ATT---------A--TCG-T-AACA-ATGTT---T-CGTGAACA--TGCA---A----GACT-------------------------A------------TTTCCAA-A----------TCAT--CCTATG--GAC-T---TTTAAT--ATTTTA-GAGTT-------TTAA-GAAAA-----TTTGTT----ACCT-CTC-T-T-TT-T--C---CA--T-TTTTT-TTATATG--CGCACCAAA---TACATA-G-ACTAAG-GTT-TTTC--C-AG-T-G-TTTTACTC-CCC--CAAA-GT-GGTGG---TGC--G-CATT-G--T-ACAT--GAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|7 : CCCCCTTT----CTT-C-TTC-CTTC-TC-AT----TTT-----G-TTT--A-------A---ATATAGAAGAAAACGTCGAGTGGCA----------------CATG-TTCTAC-TTACATGTTATCA-TTTAGC--GTTTGT------GC------------TCCTTTCTC-TC--TCTCTC------TC---------TCT-CC------TG-----ATACCG-T--TT---T-C-AA---TTAG-TAAATG-T--TATA-AC-TT-TAAAAATTAAA-TTAT--AT-CT---TTA---G-TA----GA---T-CTT-
gi|7 : tttaaaaattatctaaacaggcttacacatgg-----GTTCT--A-CTTACATGT--------TAT--CA-TTTAGCG-T------TTGTGCTCCTTTCTCTCTCTCTCTCT-CTC-C--TG-AT-ACCGTTT-TCAA-TT-AGTAAATGTT--ATA-ACTTTAAAAA-TT----AAATT-ATAT-CTTTA-GTA-GATC-TTT-TGAATGC----------------AT-CT---CAT-TCAATACTTGTTT--AATT-G----------------CA-GCCGTTAAACG-AT-----A-TG----A-GT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC---G-ACGTAAATA---A------T-----TAGT-A-----TGTCAGAATT-ACCAAT--TT--TTTTTTT-T--A-ATGA--AGA-CAA-AATTA--TATT-AAAG-AA---C-TTAGA-ACTAA-ATGAA-TAGA-TTT--TAA-A-GACCACAC-A-TACATATT-TTTAA-TAA--TATATA-A--TATA--C-T-ATGCAGATTA-ATA-CATA--C-GTTT-CTAT-TGCAT-----TACCCGT-C-ATTGCCG--T-CA--TCGCT-AACA-ATGTT---TTCGCGA--A--TGCAG--A-------T-A------------------------------------TTCC--A-A----------TCAT--CCTATT--GGA-TATTTT---T--ATGTTA-G---T-------TTAA-G-AA------TTT-TT----A-C--CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--TGCACG-AA---TACACAGG-ACTAAG-GTT-TTTT--C-AGAT-G-TTTT--CC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-GGCC-ACAC--AAG-T-GCGC---CC--TATAC--ACG-ATACTATACGttgaatgcatctcattcaatacttgtttaattgcagccgttaaacgatatgagttactgattgttatcgataggtacgacgtaaataattagtatgtcagaattaccaatttttttttttaatgaagacaaaattatattaaagaacttagaactaaatgaatagattttaaagaccacacatacatatttttaataatatataatatactatgcagattaatacatacgtttctattgcattacccgtcattgccgtcatcgctaacaatgttttcgcgaatgcagatattccaatcatcctattggatatttttatgttagtttaagaatttttacctcattcttccatttttttgatgtgcacgaatacacaggactaaggttttttcagatgttttccccccaaagtggggggtgcgcattggccacacaagtgcgccctatacacgatactatacg
gi|8 : tttaaaaattatctaaacaggcttacacatggccccctttcttcttccttctcattttgtttaaatatagaagaaaacgtcgagtggcacatCCCCTTT----CT--T-CTC-TCTC-TA-ATGA-TTTTT----GATTTG-A-------A---A----------------GA-----A----------------CAAT-T-CTAC-T-ACATGT-ATCA-ATTAGTGTGTTTGT------G
gi|8 : ACG-----ATA-CG-T--TT---TTC-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TTACT---TTA----CTC----GG---T-TTTTAAA-GAA-ATTAT-ATT-GG-----GTT--GCA-CATACAT-TAT---C--TAT--CA-TTTTGCG-CGCNNNNNN---NNNNNNNNNNNNNNNNNNNNN-N----GATG-AT-AC-GTTT-TCA--TTTAGGAAATGTTTTAT--ATTT-AAAAG-TT----AAATT-GTCTTCTTTA-GTA-GAAT-TTGGT-AATGCTTT-GAAC-A--ATATATACT---CAT-TCGATACTTGTT----AAT-G----------------CA-G-----------AT-----A-TGG---AATT-T-ACTG-A-TTG--TTAT--A--TA-G-AGGTAC--AG-ACGCAA-TA---A------T-----TAGT-A------AT--AAATTGACTTACAATTGTTTTTTTTAT--G-ATGA--AAAACAA-A-ATA--TATTTAA-G-AAAGAC-T-AGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATA-ATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT--CTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAAT-AGG-AGTGGG------------AAA------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgatacgtttttcgatttaggaaatgctacactttgaaattgaatgatttactttactcggtttttaaagaaattatattgggttgcacatacattatctatcattttgcgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatacgttttcatttaggaaatgttttatatttaaaagttaaattgtcttctttagtagaatttggtaatgctttgaacaatatatactcattcgatacttgttaatgcagatatggaatttactgattgttatatagaggtacagacgcaataattagtaataaattgacttacaattgttttttttatgatgaaaaacaaaatatatttaagaaagactagaactaaatgaataattttaaacacacacatacatatttaagtaaataatacatatactatgcaattaatacatacgtttctttgattaccgtcaatgtcgtcatcgtaacattgtttcggaatgcagaaaataggagtgggaaaa
gi|9 : cccctttcttctctctctaatgatttttgatttgaaagaacaattctactacatgtatcaattagtgtgtttgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGA-TTTT-----GA-------------A---A----------------GA-----A----------------AATGAT-CTA--T-ACATGT-ATCA-TTTAGCCTGTTTGT------GCGCATNNNNNNNNNNNNNNNNN-NN--NNNNNNNNNN--NN---------NNN-NN----NATG-----AT--CA-C--TT---T-C-GAAATTTAATGAAATG-T--TCG--AC-TT-T--AAATTGAA-TGAT--TT-TT---TTA----TTC----GA---TATTT-AAA-GAA-CT-AT-ATT-GG--------TTGCA-CATACATGTATTA-C--TAT--CA-TTTTGCA-CGCNNNNNN---NNNNNNNNNNNNNNNNNNNNN-NN---AATG-AT-AC-GTTT-TCAA-TG-AGAGAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GT-T-CTTTA-GT--GATC-TTTGT--ATGCTTT-GAAG-C--ACATATACT---CATATC-ATACT-GTTT---AAT-G----------------CA-GCCTTAAACG--AT-------TGG---A-TT-TTACTG-A-TTT--TTAT--CC-GA-T-AG-TAC--AG-ACGTAAATA---A------T------AGT-A------------ATTGAC-AACAAAT--TTTTTTT-T--T-AT-A--AAA-CAATA-TTA--TATT-AA-G-AA---C-TTAGA-ACTAATATGAA-TA-A-TTTTATAA-A-AAC-AAAC-A-TACATATT-T--a
blockSeqs : TCTC G T C G C C T TTTTAGAATTAATGAAGAAAAAGTTCGGCTGCACT A T C T T T TGCGCATNNNNNNNNNN . TT ATTTTTTAAAAGATATCTAT GGTTTACACATGG ATAC . AA T TAT G A TAA . G AA A GTT TATTC T A T A . T A C CACAT TT . CTA AT TA T . CTTCTCTACGT T T TA C G C C AA TT . T . TTTA . T T C G A . C GA . A G TTTAAT C CAGCCGTTTAAACA TAACAA . A . T . G T . TG . A A T AATAGGCC A TGTCAG G TA A GT TGA . A ATTAAT T A A AGAC T T G . G A TA G AC A A T ATA CA A TT A A T G G T ATC C . C GTGAA C G G G TCC AA G A . GGT T TGAACA AT GGATAAAGAGCAGGAAAAATCCAATAAATTTTTAT C TT T ATT TAA TT C CCTTTAGG GA TTTTT G GTTT C A A . TTGCG TT . G TG AC CA GAG AA C . T A C T AC G AA T G CCG . G GGCC AA C G . . . .
blockSeqs : . . . . . . T . TTTACCATATCAAGAAGTAAACGTTCGGTGCA . . . . . . CTCGNNNNNNN . . TTCTTCCCTACCGAAT ATACGAT TT . . . C C . AA . G . . . AACTC . . . . . . . . . TT . TA . . . . CCCCNNNNNNN N . NG . . . . A A . . . A . C . . . . . . . . . G TTTT . CAGCCGTTAAACG AT . . . . . . . . C . . A . AT . CATA G TA A . ATG . . AATTA . . . CG . . G . . . . . C A . . TTT A A . . . . . . . CC . . . . . . . G CG . C . . . . GAGAT . TAAAGAGTAGGGAAAATGTCTAACACATTGTTT . . T C . C . AGTT A ATT . . . A . . TTAC . . . TA G CA . A . . . . . . . . . . G . . . GGT . . . . . . .
blockSeqs : . . . . . . T . GTTTAAATATAGAAGAAAACGTCGAGTGGCA . . . . . . TGCTC . . ATCTCATCTCTCG ATACCGT T . . . C A . TG . G . . . ACTC . . . . . . . . . TT . . . . . . CCCCCCCCCCC T . TG . . . . A . . . . . . C . . . . . . . . . G TTTA . CAGCCTTAAACG A . . . . . . . . C . . C . AT . CATA G TA A . TG . . TATTA . . . A . . A . . . . . C C . . CT A A . . . . . . . C . . . . . . . G C . . . . . . CGAA . TAAAGAGCAGGAAAAAATCCAATAAATTTTAT . . . . . . . TA G . . . . A . . GTC . . . . . G . A . . . . . . . . . . G . . . GTA . . . . . . .
blockSeqs : . . . . . . G . TTTGATTTTGAAAGAA . . . . . . CT . . NNNNNNNNNNN GCAGGT T . . . C . . TG . G . . . ACTC . . . . . . . . . TT . . . . . . TTGTGCTCCTT T . TG . . . . A . . . . . . C . . . . . . . . . G TTT . CCAG A . . . . . . . . . . . A . AT . CATA G CA A . TA . . ATTA . . . C . . G . . . . . C . . . T A A . . . . . . . C . . . . . . . A C . . . . . . AAT . AAAGAGGCAGGAAAAATCCAATAAATTTTAT . . . . . . . T G . . . . A . . TC . . . . . . . A . . . . . . . . . . T . . . GT . . . . . . .
blockSeqs : . . . . . . G . GATTTTGAAAGAA . . . . . . . . . NNNNNNNNNNN ATACGT T . . . T . . TG . C . . . AGTA . . . . . . . . . CT . . . . . . NNNNNNNNNNN T . C . . . . A . . . . . . T . . . . . . . . . A TTT . CAG A . . . . . . . . . . . A . AT . CATA G TT A . TA . . ATCA . . . C . . G . . . . . C . . . T A A . . . . . . . C . . . . . . . A T . . . . . . AAT . AAATAAGGAGGAAAATTCCAAA . . . . . . . T A . . . . C . . TC . . . . . . . A . . . . . . . . . . G . . . AT . . . . . . .
blockSeqs : . . . . . . G . TGATTTGAAAGAA . . . . . . . . TCTCTCC ATACGT T . . . N . . TG . T . . . ACTC . . . . . . . . . TT . . . . . . NNNNNNNNNNN N . G . . . . A . . . . . . A . . . . . . . . . A TTT . CAG A . . . . . . . . . . . A . AT . TGTC G T A . TT . . AATA . . . C . . G . . . . . G . . . T A A . . . . . . . C . . . . . . . A T . . . . . . GAA . AAATAGGAGGAAATTTCAA . . . . . . . T G . . . . C . . TC . . . . . . . A . . . . . . . . . . T . . . GT . . . . . . .
blockSeqs : . . . . . . G . GATTTGAAAGAA . . . . . . . TTCTT ATCAC T . . . T . . NN . G . . . ATTC . . . . . . . . . T . . . . . . CTCTCTC N . A . . . . A . . . . . . A . . . . . . . . . G TT . CAG A . . . . . . . . . . . A . AT . TGT G A . . G . . AT . . . C . . G . . . . . C . . . T A A . . . . . . . C . . . . . . . G C . . . . . . GAA . AAATAGGGAAAATCCAAA . . . . . . . G . . . . . C . . AC . . . . . . . A . . . . . . . . . . G . . . AT . . . . . . .
blockSeqs : . . . . . . G . GAAAGAA . . . . . . TACG T . . . C . . TG . G . . . ACT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . TT . CAG . . . . . . . . . . . . . . AT . ATA . A . . T . . TT . . . C . . . . . . . . A . . . T A A . . . . . . . C . . . . . . . T T . . . . . . AAT . GACTATTTCCAAA . . . . . . . G . . . . . A . . TC . . . . . . . A . . . . . . . . . . G . . . GT . . . . .
blockSeqs : . . GAAAGAA . . . . . . AT . . . . T . . T . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TT . CAG . . . . . . . . . . . . . . . . . . . . . . . . A . . . C . . . . . . . . . . . . C . . . . . . . . . C . . . . . . . T T . . . . . . GAA . TATTCCAA . . . . . . . T . . . . . T . . TC . . . . . . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . A . . . . . . . GA . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . T
blockSeqCons : TGCT******************* TTCTTTCTCTN**************** ATACGT********* C*** ** TG** ACTC******** *** TT CG* A* ** *** TTT*** CAG**************************** *** ** ** A** AT************** CATA******* TA TG**** ** ATTA**** T*** ** C*** C*** GAN***** ** G** **** A* ** ** *** ** **
originalCons : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GATTT--A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTGTTTGC------GC------------TCCTCTCTC-TC--TCTCTCNTCT--TC---------TCT-CC----AACG-----ATA-CG-T--TT---T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TGAT--TT-CT---TTA---ACTC----GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCTCTCT-CTC-TGATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT--TAAT-G----------------CA-G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGT-A-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GA--A--TGCAG--A----AAAT-AGG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----A-CN-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
finalCons : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GATTT--A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGCGTGTTTGTGCT-------------------CTCTCTC-TC--TCTCTCTTCTTTCTCTN----------------AACGATACGT---------TT---T-C-GA--TTTAG-GAAATGC---TAC--AC-TTTG--AAATTGAA-TGAT--TT-CT---TTACTC--------GA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCTCTCT-CTCCG-ATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTA-GATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTTGTTT---AAT-GCAG----------------------------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TTAT--C--GA-T-AGGTACA--G-ACGTAAATAAT--------------TAGT-ACATA-------AATTGACTAACAATT--TTTTTTTTG----ATGA--AAA-CAAATTA----TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATTT---AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATAC---GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCGC---CA--TCG-T-AACA-TTGTT---T-CGGAN-----TGCAG--A----AAAT-AGG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAAG--AAA-----TTT-TT----A-CA-CTCAT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTGTGAATTAAGTTGGAGGTCTTTGAAAGAAAATCTTATATACGTGGTTACAGCGTGCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTAAAAGATATCTATAACAGGTTACACATGCCCCCTTCTCTCCTTCTCATTTTTTTTAAATATAGAAGAAAACGT
Unaligned ( gi|17 ): TTAATGTAATATTTTCAATTATTTAGGAAAAGTAATATTTGGAAACTTTTTTTTATTAGATGTTGATAAAAAATATAATTGGACGCACATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333 1111111 22222222222222222222 5555555555555555555555555555555555555555555555555 11 11111111111 111 11 111 11111111111111 22222222 11 1111 6666666666666666666666666666 1111111 11 1111111111111111 111111 11 1111 11111111 1 1111 66666666666666666666666666666666666666666666666666666666666666666 111 22222222222 111 11111 1111 11 11 11
lowQualScore : 9999 8 4 4 4 8 5 4 44444444444444444444444444444444444444444444444444444444444444444 4 4 8 4 4 4 8 2 3333333 99999999999999999999 5 2 3333333333333333333333333333333333333333333333333 4 55 4 8888 77 4 6666 4 55 777 4 4 22222222222 000 3 3 4 4 4 4 4 99999 0 00 4 111 55 55 3 4 33333333333333 55555555 4 4 4 4 88 0 0 33 4 4 4 2222 4 5 4 4 4 4 3 4 4 55 777 4 4 0 55 4 7777 8 4 9999999999999999999999999999 4444444 777 4 4 4 4 4 55 4 55 33 4 4 888 4 0 6666666666666666 888888 55 2 5 00 0 55 4 2222 55 4 22222222 8 4 3 66666 3 7 2 3 7 3 55 3 99 0 3 6 3333 55 1 55 99 4 4 3 3 3 5555 3 3 3 99999 3 3 3 4 9999 55 7 3 3 666 3 777777 55 77777777777777777777777777777777777777777777777777777777777777777 99 55 8 111 777 99 4 11111111111 0 000 55555 3 1111 22 3 3 3 66666666 55 3 3 00 88 33 666 55 3 3 88 3 3 3 55 3 55 3 3 666 55 4 777777 66 4 4 777 66 66 5 0 0
lowQualScore : .... . . . . . . . ................................................................. . . . . . . . . ....... .................... . . ................................................. . .. . .... .. . .... . .. ... . . ........... ... . . . . . . . ..... . .. . ... .. .. . . .............. ........ . . . . .. . . .. . . . .... . . . . . . . . . .. ... . . . .. . .... . . ............................ ....... ... . . . . . .. . .. .. . . ... . . ................ ...... .. . . .. . .. . .... .. . ........ . . . ..... . . . . . . .. . .. . . . .... .. . .. .. . . . . . .... . . . ..... . . . . .... .. . . . ... . ...... .. ................................................................. .. .. . ... ... .. . ........... . ... ..... . .... .. . . . ........ .. . . .. .. .. ... .. . . .. . . . .. . .. . . ... .. . ...... .. . . ... .. .. . . .
lowQualScore : 4444 9 4 4 4 9 0 0 55555555555555555555555555555555555555555555555555555555555555555 0 0 0 0 0 0 0 5 0000000 22222222222222222222 7 9 2222222222222222222222222222222222222222222222222 0 55 0 6666 55 0 1111 0 55 000 0 0 77777777777 000 6 6 0 0 0 0 0 11111 7 33 0 444 00 00 6 0 88888888888888 55555555 0 0 0 0 88 8 8 55 0 0 0 5555 0 7 0 0 0 0 2 0 0 55 000 0 8 8 55 0 8888 0 0 0000000000000000000000000000 8888888 000 0 0 0 0 0 55 0 55 55 0 0 777 0 8 8888888888888888 222222 55 3 0 66 9 55 0 7777 55 0 44444444 0 0 6 88888 6 3 8 6 3 6 00 6 55 0 3 7 5555 99 3 55 55 0 0 6 6 6 5555 6 6 6 11111 6 6 6 9 0000 00 3 6 6 444 6 555555 00 33333333333333333333333333333333333333333333333333333333333333333 55 55 0 000 000 55 0 33333333333 8 888 55555 6 4444 33 6 6 6 55555555 00 6 6 00 66 66 444 99 6 6 66 6 6 6 00 6 00 6 6 444 55 0 333333 11 0 0 000 11 99 0 2 5
consensus : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GATTT--A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGCG-TGTTTG-------TGC-------------TC-----TCTC-TCTCTCTCTCTTCTT-CCC--CC-GAACGAT---A-C---------G-TTT----------T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TG--ATT---T-CTTT-A------CT--CGA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCTCTCT-CTCCG--ATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTAG-ATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTT--G-TT---TAAT-GC-A----------------G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TT-AT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTA-----CGT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GAN--TGCAG--A----AAAT-AGG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----ACA-CTC-AT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
Reference ( family-4044 ) : CCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GATTT--A-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGCG-TGTTTG-------TGC-------------TC-----TCTC-TCTCTCTCTCTTCTT-TCT--CT-NAACGAT---A-C---------G-TTT----------T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TG--ATT---T-CTTT-A------CT--CGA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCCCCCCT---CTCCCTTCTCTCTCTCTCTCT-CTCCG--ATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTAG-ATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTT--G-TT---TAAT-GC-A----------------G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TT-AT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTA-----CAT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AACA-TTGTT---T-CG-GAN--TGCAG--A----AAAT-AGG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---T-------TTAA-G-AAA-----TTT-TT----ACA-CTC-AT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--T-ACAC--AAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|1 : CCCCCTT----CTCGT-CTC-TCTC-TACATTA-GTTT-------TTT--ACCATATCA---A----------------GA-----AGTAAACGTTCGGTGCACATG-T-CTACCT-ACATGT-ATCA-TTTAGCGTTTTTTG-------TGC-------------
gi|1 : CTCCTCTT----CTC-T-CTCCTCTCGTC-ATCG-TTTTTTTTAGAATT--A-------ATGAA----------------GA-----AAAAGTTCGGCTGCACTTATG-T-CTAC-T-ACATGT-ATCA-TTTAGCG-TCTTCG-------TCC-------------TC-----TCTCTTCTCGCTCTC-TGTT-CCC--CA-TAACGAT-----------------TGT----------T-CAAA--TTTAG-TATATGTT--TATGGAC-TTAA-AAAATTAAATTT--ATA---T-CTTT-AGAGAGTCTTGTGATGTT-TTT-GAA-GCATAT-AT-AAT-GG-----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctactacatgtatcatttagcgtcttcgtcctctctcttctcgctctctgttccccataacgattgttcaaatttagtatatgtttatggacttaaaaaattaaatttatatctttagagagtcttgtgatgtttttgaagcatatataatggccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|1 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatTACATGTAT---C--------A-TTTAGCGTCTTCGTCCT---CTCTCTTCTCGCTCTCTGT-T-CCCCATAACG-AT-----TGT-TCAAATTTAGTATATGTTT-ATGGACTT-AAAAAATT----AAATTTATAT-CTTTA-G-AG-AGT-CTTGTGA-TGTTTTTGAAG-C--ATATATAATGGCCAT---AATACCTATG-TT---TATG-GC-ACGCGCAGCCGTAACACG-----------AT-----A-TGGGTCA-TTGT-ACGGGA-CTGGTTT-ATTCC--GAGT-AGGTAGTGAG-AAGTAAATATATA------TCTCTATAGTAATTTTCGT--AGAT------ACAATT--TTTTTTT-TTAG-ATGACCAAA-CAACA-TTA--TCTTGAA-G-AA---C-TAGAA-ACTAATATGAAATAGA-TTT--TAA-A-GAC-ACAC-ACTAAATATTGTG-AAATAA-TTGTATACC--AGTAATC-T-ATGCA-ATTA-ATA-CATA----GTTC-TCGTATG-AT-----TACC-GT-C-A--------------TCG-T-AACAATTGTT---T-TG--AA--TGCAG--A-------T-A------------------------------------TTCC--ACA----------TCATGCCTTGTG--GAA-T---TT---T--ATTTTA-A---T-------TTAATG-AAA-----TTT-TTT---ACCTCTC-AT-AACT-T--C---CA--TATTTTT-T--GATG--CGCAC--AA---TACATAGA-TCTAAG-GTTATTTCTTC-AGAT-G-TTTT--T--CCC--CAAA-GTGGGAGG---TGCCTG-CA-T-A--T-ACAT------T-GCGCTTTACGGAATACGGACGTGGACTATAccataatacctatgtttatggcacgcgcagccgtaacacgatatgggtcattgtacgggactggtttattccgagtaggtagtgagaagtaaatatatatctctatagtaattttcgtagatacaatttttttttttagatgaccaaacaacattatcttgaagaactagaaactaatatgaaatagattttaaagacacacactaaatattgtgaaataattgtataccagtaatctatgcaattaatacatagttctcgtatgattaccgtcatcgtaacaattgttttgaatgcagatattccacatcatgccttgtggaattttattttaatttaatgaaattttttacctctcataacttccatattttttgatgcgcacaatacatagatctaaggttatttcttcagatgtttttccccaaagtgggaggtgcctgcatatacattgcgctttacggaatacggacgtggactataaacgac
gi|10 : cccccttctcgtctctctctacattagttttttaccatatcaagaagtaaacgttcggtgcacatgtctacctacatgtatcatttagcgttttttgtgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgctcctggcttgttctcatctcctcttctctctcctctcgtcatcgttttttttagaattaatgaagaaaaagttcggctgcacttatgtctacCTCTCTCTTCTT-CCCTACC-GAATAATGGCA-G---------G-TGTATA-------C-T-AA--TCGAG-AATATG-TATTACG-AC-TT-A-AAGACAGAA-TATAATTCTGT-TTTT-A------TT--CGA---T-TTT-AAA-GAC-CT-AT-ATT-GG-----GTT--GCATCATACATGTAT---C--TACTACA-TTTTGCA-CGCTCTTCT---CTACGTCCTCTCTCTC-CTCTTCTCTA--ATGCATGAC-GTTT-TCAAATTTAGGAA-TGTT--ATG-ACTT-AAAAA-TT----AAATT-GTTT-CTTTA-GTAGGATC-TT-GTGAATG-TTT-GAAG-C--A-ATATAC----CAT-TC-ATACTT--G-TT---TAAT-GCCA----------------G-----------CTTAACAA-TGG---A-TT-T-ACTG-A-TTG--TTTAT--C--GA-T---GTAC---G-A-GTAA----------------------TA-----TGT--AA-TTGAT--ACATTT--TTTTTT-------ATGA--CA---AA-A-T----TATT-AA-GAAA---A-TTAGATACT-A-ATGAA-TA-A-TAT----A-A-CAA-ACAC-A-T-CATA-T-T--AAGTAA-ATAaacgac
gi|11 : -AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTA--TAA-AACAC-ACAC-A-TACATATTCT--AAGTAA-ATATATACA--TGTA--C-TTATGCA-ATTA-ATA-CATA--C-CTTTCTTTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--TCG-T-AATA-TCGTT---T-CG-AAT--TGCAG--AT---AAAG-AGC-A---GGAAAAAATCCAATAAA------------TTTT--A-T----------TCATC-CCTGTG--TAA-TC--TT---T--ATTTTA-G---T-------TT-----AAATTTTTTTT-TT----ACA-CTC-AT-T-CT-T--C---CA--T-TTTTTGT--GTTG--CGCACCAAA---TACATAGG-ACTAAG-GTT-TTTC--CAAGAT-GTTTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CACC-A----ACACAAAAG-T-GCGC---AC--AATAC--ATG-AGATTTTACG
gi|12 : aA-ATAG-ATA-TATAATC-TTTT-TCCC-CG-ATGTGAATACC-GT-C-AGTGTCG--C-CA--GCG-C-AAGA-TCGTT---T-CG-GAGATTGCAG--AT---AAAG-AGT-A---GGGA----------AAA------------TGTCT-A-ACACATTGTTTTCAT--CCTGTGTTATA-T---TT---T--ACTTTA-G---T-------TAAA-A-AAAATT--TTT-TT----ACA-CTC-ATAT-CT--------CA--T-TTTTT-T--GATG--CGCAC--A----TACATAGG--CTAAG-GTT-TTTTT-C-AGCT-G-TTTT--TC-CCC----AA-GTGGGGGGCCGTGC--GGCATT-G--T-ACAC--ACG-T-GCGC---GC--AATA
gi|13 : gtaagtatacttcttaggtaggttC-AC-C-A-TGCGTATG-T--AAGTAA-ATATATACA--TGTAA-C-T-ATGCA-ATTA-ATA-CATA--CCGGTT-TCTT-TG-AT-----TCCG-GTGCGAGTGTCG--CGCAAATCGGT-CAGA-TTGTTGGTT-CG-AAT--TGCAG--GGGATAAAG-AGC-A---GG------------AAAAATCCAATAAATTTTT--A-T----------TCAT--C-TGTG--TAA-T---TT---TTTATTTTCCG---T-------GTAA---AAA-----TTT-TTGTTTACA-CTC-AT-T-CT-T--TGCGCG--T-TTTTT-TTGGATGG-CGCAC--GAGAGTACATAGG---CAAGCGTT-TTTC--G-ACATCG-TTTT--TTGCCC--CAAA-GTGGGCGG---gtggagactctta
gi|14 : CCCCCCTT----CTCGT-CTC-TCTC-TACATTA-GTTT-------TTT--ACCATATCA---A----------------GA-----AGTAAACGTTCGGTGCACATG-T-CTACCT-ACATGT-ATCA-TTTAGCGTTTTTTG-------TGC-------------g
gi|16 : ttgtgaatattttggattcttgaaagaaatcttataacaggtttcaacactgccgctttctccttctctcctcgtctcttctctctctctctctctcgtctattttttaataaagatataataatgacaggttacacatgcc-AAA-----TTT-GC----ACA-CCC-AT-T-TTGT--C---AA--A-TTTG-----GATG--CGCAT--GA---TACATAGG-ACTAAA-GTT-TTTT--T-TATT-A-TTAT--TT-GTTAATAAATGTTTGGGA---TGT--G-TGTT-A--T-ACAC--GAG-T-GCGC---A
gi|18 : GA---T-TTT-AAAAGAA-TT-AT-ATT-GG-----GTTT--CA-TATACATGTATCTAC--TAT--CA-TTTTG
gi|19 : AG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|2 : CCCCTTT----CTC-T-TTC-TCTC--A-ATTA-TTTT-----GATTTG-A-------A---A----------------GA-----A----------------C-TC-C-TTAC-T-AAATG---TTA-TTTAGTG-TGTTTG-------CGt
gi|2 : gAACGAT------------------TT----------T-C-GA--TTTAG-GAAATG-C--TAC--AA-TT-T-GAAATTGAA-TG--ATT---T-C-TT-A------CT---GA---T-TT---AA-GAA-AT-AT-ATT-GG-----GGTTTGCA--ATAC-TGTAT---C--TAT--CATTTTTGTG-TGCCTCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|2 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacG--ATG-AT-A--GTTT-TCA--TTTAGGAA---TC--GTA-ATT---AAAA-TT----AA-TT-GTCT-CTTTACGTAG-ATA-TT-GTGAATGTTTT-GAAG-CGAATATATACT---CAT-TCGA--CTT--G-TT----AATCGC-A----------------G-----------AT-------TGG---A-TT-T-ACTG-A-T-------AT--CC-GA-T-AGGTAC--AGTACGCAAATA---AATAGGCC-----TAGTA-----CAT--AA--T--CTA-CAATT--TTTT-------G-ATGA--A---CAA---TT---TATT-AA-G-AA-----TTAG----CAA-ATAAA-TA-AATTT--TAA-A--AC--CAC-C-TACATATT-T--A-GTAA--TATATA-A--TACA--C-T-ATGCA-ATTAGATA-CAT-----GTTC-T-TT-TG-AT-----TACC-G--C-AATGTT---T-CA--TCG-T-AACA-TTG-T---T-CG-GAT----CAG--A----AAATAAGG-A---GG------------AAA------------ATTCCAA-A----------TCAT--CCTGTG--GAATT---TT---T--ATTTTA-G---G-------TT-----GAA-----TTT-TT----ACC-CTC-AT-T-CT-T--C---C-----CTTTT-T--GATGACTGCAC--AA---TACAT-GG-A--AAG-GTT-TTTC--C-AGA--G---TT--TC-CCC--CAAA-GT-GGGGA---TGC--G-CATTGG--T-ACAT--AAGCT-GCGC---AC--AATAC--ACG-GGA-TCTACGtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatagttttcatttaggaatcgtaattaaaattaattgtctctttacgtagatattgtgaatgttttgaagcgaatatatactcattcgacttgttaatcgcagattggatttactgatatccgataggtacagtacgcaaataaataggcctagtacataatctacaattttttgatgaacaatttattaagaattagcaaataaataaattttaaaaccacctacatatttagtaatatataatacactatgcaattagatacatgttcttttgattaccgcaatgtttcatcgtaacattgttcggatcagaaaataaggaggaaaattccaaatcatcctgtggaatttttattttaggttgaatttttaccctcattcttccctttttgatgactgcacaatacatggaaaggtttttccagagtttcccccaaagtggggatgcgcattggtacataagctgcgcacaatacacgggatctacg
gi|3 : gcccctttctctttctctcaattattttgatttgaaagaactccttactaaatgttatttagtgtgtttgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacgattttcgatttaggaaatgctacaatttgaaattgaatgatttcttactgatttaagaaatatattggggtttgcaatactgtatctatcatttttgtgtgcctcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCCCCTT----CTC-T-CTC-TCTC-TA-ATGA-TTTT-----GA-------------A---A----------------GA-----A----------------CATG-T-CTAC-T-GCATGT-ATCA-TTTAGCG-TGTCTGCTCGNNNNNN-------------NN-----NNNN-NNNNNNNNNNNNNNN-NNN--NN-NAACGAT---A-C---------GATTT----------T-C-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TG--ATT---T-CTTTAA------CT--CGA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTTTTGCA-CATACATGTA----C--TAT--CA-TTTTGCG-CGCCCCCCN---NNNNNNNNNNNNNNNNNNNNN-NNNNG--ATG-AT-AC-GTTT-TCAA-TTTAGGAAATGTT--ATG-ATTT-AAAAA-TT----AAATT-GTCT-CTTTA-GTAG-ATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTT--GTTT---TAAT-GC-A----------------G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TT-AT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTA-----CAT--AAATTGACTAACAATT--TTTTTTT-T--G-ATGA--AAA-CAA-A-TTA--TATT--A-G-AA---C-TTAGA-ACTAA-AT-AA-TA-A-TTT--TAA-A-CAC-ACACAA-TACATATT-T--AAGTAA-ATATATACA--TATA--C-T-ATGTA-ATTA-ATA-CCTA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-GACA-TTGTT---T-CG-GAA--TGCAG--A----AAAT-AGG-A---GG------------AAA------------TTTC--A-A----------TCAT--CCTGTG--GAA-T---TT---T--ATTTTA-G---G-------TTAA-G-AAA-----TTT-TT----ACC-CTC-AT-T-CT-T--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TT-CCC--CAAA-GTGGGGGG---TGC--G-CATT-G--TAACAT--AAG-TGGCGC---AC--AATAC--ACG-GGACTATACGG
gi|4 : CCCCTTTCTCCTC-T-CTC-TCTC-TA-ATGATTTTT-----GATTTTGA-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCATTTTAGCG-TGTT---------TGC-------------TC-----TCTC-TCTCTCTCTCATCTCATCT--CTCGAACG-T---A-C---------G--TT----------T-C-GA--TTTAG-GAAATG-C---AC--CCATT-T-GAAATTGAA-TG--A-T---T-CTTT-A------CT--CGAT--T-TTT-AAA-GAA-AT-ATAATT-GG-----G-TTTGCA-CAT-CATGTAT---T--TAT--CA-AATTGTG-CGCCCCCCC---CCCCCCTCTCTCTCTCTCTCT-CTCTG--ATA----AC-GTTTCTCAA-TTTAGGATATGTT--A-G-ATTT--AAAA-TT-----AATT-GTCT-CTTTA-GTAG-ATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGAT-CTT--G-TTTAATAAT-GC-A----------------G-----------AT-----ATTGG---A-TT-T-ACTG-AGTTG--TT-AT--C--GA-TAAGGTAA--CG-ACGTAAATA---A------T-----TAGTA-----CAT--AAATTGACTAA----T--TTTTTTT-T--GAATGA--AAA-CAA-A-TCA--TATT-AA-G-AA---C-TTAGA-ACTAA-ATGAA-TA-A-TTT--TAA-A--ACAACAC-A-TACATATT-T--AAGTAA-AT-TATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT-TCTT-TG-AT-----TACC-GT-C-AATGTCGTCC-CA--TCG-TAAACA-TTGTT---T-CG-GAA--TGCAG--A----AAAT-AGG-----GA------------AAA------------TCCA--A-A----------TCAT--CCTGTG--GAATT---TT---T--ATTTTA-G---CCTTTAGGTTAA-G-AA-------TT-TT----ACC-CTC-AT-T-CT-TTAC---CATTT-TTTTT-T--TATG--CGCAC--AA---TACATAGGAACT-AG-GTT-TTT---C-AGAT-G-TTTT--TC-CCC--C-AA-GTTGGGGG---TGC--G-CATT-G--T-A
gi|5 : T----CTC-TTCTC-TCTC-TA-ATGA-TTTTTTT--GATTTTGA-------A---A----------------GA-----A----------------CATG-T-CTAC-T-ACATGT-ATCA-TTTAGAG-TG----------------------------C-----TCTC-CTTCTCTCTCTTCTT----------AACGAT---A-C---------G-TTT------------C-GA--TTTAG-AAAATG-T--TACC-AC-TA-T-GAAATTAAA-TG--ATT---T-CTTT-A------CT--CGA---T-TTT-AAA-GAA-AT-AT-ATT-GG-----GTT--GCA-CATACATGTAT---C--TAT--CA-TTTTGCG-CGCC--------------TCTCTCTCTCTCTCT-----G--ACA-AT-AT-G-TT-TCAA-TTTA-GAAATGTT--ATG-ATTT-AAAAA-TTTTTAAAATT-GTTT-CTTTA-GTAG-ATC-TTTGTGAATGCTTT-GAAG-C--ATATATACT---CAT-TCGATACTT--G-TT---TAAT-GC-A----------------G-----------AT-----A-TGG---A-TT-T-ACTG-A-TTG--TT-AT--C--GA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTA-----CAT--AAATTGACT-ACAATT--TTTTTTT-T----ATGA--AAA-CAA-A-------AAT-AC-G-AA---C-TTAAA-ACTA-------------------AA-A-CAC-ACAC-A-TACATATT-C--AAGTAT-AAATATACATTTATA--C-T-ATGCA-ATTA-ATA-CATA--C--TTT-TCTT-TG-AT-----TACC-GT-C-AGTGTCG--C-CA--CCG-T-AAGA-TCGTT---T-TG-AAT--TGCAGATA----AAAG-AGGCA---GGAAAAATCCAAT-AAA------------TTTT--A-T----------TCAT--CCTGTG--TAA-T---TT---TC-ATTTTA-G---TA------TAAA-A-AAA-----TTT-TT----ACA-CTC-AT-T-CT-A--C---CA--T-TTTTT-T--GATG--CGCAC--AA---TACATAGG-ACTAAG-GTT-TTTC--C-AGAT-G-TTTT--TC-CCC--CAAA-GTGGGGGG---TGC--G-CACA-A--T-ACAC--AAG-T-GCGC---AC--AATAC--ATG-AGATTTTAC
gi|6 : tctc-------------TC-----TCTC-TCTCTTTCTCTCATT-T-T--TT-AAAAGAT---A-TCTATAACGGG-TTTACACATGGTCT-N-NN--NNNNN-NNNNNN-N--NNN--NN-NN-N-NNNNNNNNN-TC--ATT---T--TTT-A-----------AA---T-ATA-GAA-GCA-AA-AC-ATTCGGCACATGTCTTAC----TACATGTAT---CATTAG--CA--TTTGTG------CTCT---CTC---TCTCTCTC-CTCTCT-CTC-----TG-AT-AC-GTTT-TCAA-TTTAGT-AATGTTA-ATG-ACTT-AAAAA-TTA---AAATT-ATAT-CTTT--GTAT-ATTACTTGTGAATGTCTT---AGCC--ATATATACT---CAT-TCAA-ACTT--G--T---TAAT-GC-A----------------GCCGTTTAAACAAT-----A-TGG---A-TT-T-ACTG-A-TTG--TT-AT--CTGAA-T-AGGTAC--AG-ACGTAAATA---A------T-----TAGTA------AT----GTCCAGAAACAA----TTTTTGT-T--A-ATGA--AAA-CAA-A-TTAATTATT-AA-G-AA---CGTTAGA-ACT-A-AT-AA-TA-A-TCT--TAAGA-CACAACAC-ATTACATATTATA-AAATAACAT-TAAACA--TATA--CAT-ATGCA-ATT--ATATCATA--C-GTTT-ACTA-TG-AT-----TACC-GT-C-ATT---------A--TCG-T-AACA-ATGTT---T-CG------T---G--A----ACAT-GCA-A---GA------------CTA------------TTTCCAA-A----------TCAT--CCTATG--GAC-T---TTTAAT--ATTTTA-GAGTT-------TTAA-GAAAA-----TTTGTT----AC--CTCTCT-T-TT-T--C---CA--T-TTTTT-TTATATG--CGCACCAAA---TACATA-G-ACTAAG-GTT-TTTC--C-AG-T-G-TTTTACTC-CCC--CAAA-GT-GGTGG---TGC--G-CATT-G--T-ACAT--GAG-T-GCGC---AC--AATAC--ACG-GGACTATACGG
gi|7 : ctCCCCCTTT----CTT-C-TTC-CTTC-TC-AT----TTT-----G-TTT--A-------A---ATATAGAAGAAAACGTCGAGTGGCA----------------CATG-TTCTAC-TTACATGTTATCA-TTTAGCG-T--TTG-------TGC-------------TCCTTTCTCTC-TCTCTCTCTCTCCT--------------GAT---ACC---------G-TTT----------T-C-AA---TTAG-TAAATG-T--TATA-AC-TT-TAAAAATTAAA-TT--ATA---T-CTTT-A------GT--AGA---T-CTT-
gi|7 : tttaaaaattatctaaacaggcttacacatgg-----GTTCT--A-CTTACATGT--------TAT--CA-TTTAGCG-T------TTGTGCTCCTTTCTCTCTCTCTCTCT-CTCC----TG-AT-ACCGTTT-TCAA-TT-AGTAAATGTT--ATA-ACTTTAAAAA-TT----AAATT-ATAT-CTTTA-GTAG-ATC-TTT-TGAATGC----------------AT-CT---CAT-TCAATACTT--G-TT---TAATTGC-A----------------GCCGTTAAACG-AT-----A-TG----A-GT-T-ACTG-A-TTG--TT-AT--C--GA-T-AGGTAC---G-ACGTAAATA---A------T-----TAGTA-----TGTCAGAATT-ACCAAT--TT--TTTTTTT-T--A-ATGA--AGA-CAA-AATTA--TATT-AAAG-AA---C-TTAGA-ACTAA-ATGAA-TAGA-TTT--TAA-A-GACCACAC-A-TACATATT-TTTAA-TAA--TATATA-A--TATA--C-T-ATGCAGATTA-ATA-CATA--C-GTTT-CTAT-TGCAT-----TACCCGT-C-ATTGCCG--T-CA--TCGCT-AACA-ATGTT---TTCGCGAA--TGCAG--A-------T-A------------------------------------TTCC--A-A----------TCAT--CCTATT--GGA-TATTTT---T--ATGTTA-G---T-------TTAA-G-AA------TTT-TT----AC--CTC-AT-T-CT-T--C---CA--T-TTTTT-T--GATG--TGCACG-AA---TACACAGG-ACTAAG-GTT-TTTT--C-AGAT-G-TTTT--CC-CCC--CAAA-GTGGGGGG---TGC--G-CATT-GGCC-ACAC--AAG-T-GCGC---CC--TATAC--ACG-ATACTATACGttgaatgcatctcattcaatacttgtttaattgcagccgttaaacgatatgagttactgattgttatcgataggtacgacgtaaataattagtatgtcagaattaccaatttttttttttaatgaagacaaaattatattaaagaacttagaactaaatgaatagattttaaagaccacacatacatatttttaataatatataatatactatgcagattaatacatacgtttctattgcattacccgtcattgccgtcatcgctaacaatgttttcgcgaatgcagatattccaatcatcctattggatatttttatgttagtttaagaatttttacctcattcttccatttttttgatgtgcacgaatacacaggactaaggttttttcagatgttttccccccaaagtggggggtgcgcattggccacacaagtgcgccctatacacgatactatacg
gi|8 : tttaaaaattatctaaacaggcttacacatggccccctttcttcttccttctcattttgtttaaatatagaagaaaacgtcgagtggcacatCCCCTTT----CT--T-CTC-TCTC-TA-ATGA-TTTTT----GATTTG-A-------A---A----------------GA-----A----------------CAAT-T-CTAC-T-ACATGT-ATCA-ATTAGTG-TGTTTG-------TG
gi|8 : ACGAT---A-C---------G-TTT----------TTC-GA--TTTAG-GAAATG-C--TAC--AC-TT-T-GAAATTGAA-TG--ATT---TACTTT-A------CT--CGG---T-TTTTAAA-GAA-ATTAT-ATT-GG-----GTT--GCA-CATACAT-TAT---C--TAT--CA-TTTTGCG-CGCNNNNNN---NNNNNNNNNNNNNNNNNNNNN-N---G--ATG-AT-AC-GTTT-TCA--TTTAGGAAATGTTTTAT--ATTT-AAAAG-TT----AAATT-GTCTTCTTTA-GTAG-AAT-TTGGT-AATGCTTT-GAAC-A--ATATATACT---CAT-TCGATACTT--G-TT----AAT-GC-A----------------G-----------AT-----A-TGG---AATT-T-ACTG-A-TTG--TT-AT--A--TA-G-AGGTAC--AG-ACGCAA-TA---A------T-----TAGTA------AT--AAATTGACTTACAATTGTTTTTTTTAT--G-ATGA--AAAACAA-A-ATA--TATTTAA-G-AAAGAC-T-AGA-ACTAA-ATGAA-TA-A-TTT--TAA-A-CAC-ACAC-A-TACATATT-T--AAGTAA-ATA-ATACA--TATA--C-T-ATGCA-ATTA-ATA-CATA--C-GTTT--CTT-TG-AT-----TACC-GT-C-AATGTCG--T-CA--TCG-T-AACA-TTGTT---T-CG-GAA--TGCAG--A----AAAT-AGG-AGTGGG------------AAA------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgatacgtttttcgatttaggaaatgctacactttgaaattgaatgatttactttactcggtttttaaagaaattatattgggttgcacatacattatctatcattttgcgcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgatacgttttcatttaggaaatgttttatatttaaaagttaaattgtcttctttagtagaatttggtaatgctttgaacaatatatactcattcgatacttgttaatgcagatatggaatttactgattgttatatagaggtacagacgcaataattagtaataaattgacttacaattgttttttttatgatgaaaaacaaaatatatttaagaaagactagaactaaatgaataattttaaacacacacatacatatttaagtaaataatacatatactatgcaattaatacatacgtttctttgattaccgtcaatgtcgtcatcgtaacattgtttcggaatgcagaaaataggagtgggaaaa
gi|9 : cccctttcttctctctctaatgatttttgatttgaaagaacaattctactacatgtatcaattagtgtgtttgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGA-TTTT-----GA-------------A---A----------------GA-----A----------------AATGAT-CTA--T-ACATGT-ATCA-TTTAGCC-TGTTTG-------TGCGCATNNNNNNNNNNN-----NNNN-NNNNNNNNNNNNNNN-NNN--NN-NNATGAT-----C---------A-CTT----------T-C-GAAATTTAATGAAATG-T--TCG--AC-TT-T--AAATTGAA-TG--ATT---T-TTTT-A------TT--CGA---TATTT-AAA-GAA-CT-AT-ATT-GG--------TTGCA-CATACATGTATTA-C--TAT--CA-TTTTGCA-CGCNNNNNN---NNNNNNNNNNNNNNNNNNNNN-NN--A--ATG-AT-AC-GTTT-TCAA-TG-AGAGAATGTT--ATG-ACTT-AAAAA-TT----AAATT-GT-T-CTTTA-GT-G-ATC-TTTGT--ATGCTTT-GAAG-C--ACATATACT---CATATC-ATACT---G-TT---TAAT-GC-A----------------GCCTTAAACG--AT-------TGG---A-TT-TTACTG-A-TTT--TT-AT--CC-GA-T-AG-TAC--AG-ACGTAAATA---A------T------AGTA------------ATTGAC-AACAAAT--TTTTTTT-T--T-AT-A--AAA-CAATA-TTA--TATT-AA-G-AA---C-TTAGA-ACTAATATGAA-TA-A-TTTTATAA-A-AAC-AAAC-A-TACATATT-T--a
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTGTGAATTAAGTTGGAGGTCTTTGAAAGAAAATCTTATATACGTGGTTACAGCGTGCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTAAAAGATATCTATAACAGGTTACACATGCCCCCTTCTCTCCTTCTCATTTTTTTTAAATATAGAAGAAAACGT
Unaligned ( gi|17 ): TTAATGTAATATTTTCAATTATTTAGGAAAAGTAATATTTGGAAACTTTTTTTTATTAGATGTTGATAAAAAATATAATTGGACGCACATG