lowQualScore : 1111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 111111 2222222 11 33333333333333 333333 111 1 2222222 33333 1111 11111 1111 22 222 333333333 1111111 2222222222222222222222222222222222222222 333333333333 333333333 11 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111111 11111111 11111 1
lowQualScore : 3 999999 1111111 66 33333333333333 000000 000 5 6 9 8888888 55555 777 2222 22222 5 0000 22 33 333 6 0 000000000 77 6666666 77 7777777777777777777777777777777777777777 999 444444444444 5 111111111 77 5 33 77 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 3333333 66666666 66666 5 5
lowQualScore : . ...... ....... .. .............. ...... ... . . . ....... ..... ... .... ..... . .... .. .. ... . . ......... .. ....... .. ........................................ ... ............ . ......... .. . .. .. .............................................................................................................................................................................................. . ....... ........ ..... . .
lowQualScore : 3 222222 7777777 22 22222222222222 333333 000 0 0 2 6666666 22222 888 4444 55555 0 5555 44 77 222 7 9 555555555 99 0000000 44 4444444444444444444444444444444444444444 666 222222222222 2 333333333 99 7 66 99 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 0000000 11111111 33333 3 0
consensus : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT-------TTT-A--AGCAAA-----CGTAT---ACTGTAACTCTG-------AAAAAGTTG---AAAATATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A-ATTTCGTTA-TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAAT--GCTTTCA--CTAC-TAAGA-------TG-A-------AA-----------T-C------TTTTCT--TGGATTT----------T-ACCGAGCAAATA---ATCTG-TACAAA--T-ACA--T--GC-----ANT-C------AAATTT-------CA--CA--------CCTT----------AA--AAGTTATATN-G--CA-------AAATGATA------TGCAA---TAC--TTAA--TGTTA---C-ACTGT-------T-TT-GG----AAAGC--TG-AAAGTGTCTACTTNA---C-GGC---GAC-TGTTATTC-------TTGAAACTGTATCTA--------TTAAAACAAACAA----GATATCTGCTTCCATATTAGGTAA
Reference ( gi|3 ) : ATAACATTG-TTGTCATA------TATACAACC-----ATATTCAATAT-------TT--A--AGCAAA-----CGTAT---ACCGTGACGCTG-------AAAAAGT-A---AAAATATCACACTTAG-GTGCTCATGCTATTTCT-----TCTG-T-A-ATTTCGTTACTTTTTCAATCAAATTAGTAACTGTACATTTTGAAATAAAGTGTATAAAAT--GCATTTA--CTAT-TAAGA-------T----------AA-----------T--------TTTTCT--TGGATTT----------T-ACCGAACAAGTA---AACTG-TACAAA--T-ACA--T--GC-----ATC-C------AAATTT-------CA--CA--------CCTT----------AA--AAGTTATATA-G--CA-------AGATGATA------TGCAA---TAC--TTAA--TGTTG---C-ACTGT-------T-TT-GG----AAAGT--TG-AAAGTGTTTACTCTA---T-GAC---GACTTATTATTC-------TTGAAACTGTATCTA--------TTAAAACAAACAA----AATATCTACTTTCATATTATGTAAT
gi|9 : CATTA-CTGT--TT------TATACAA---------ATT-AATAT-------TTT-A--AGAAAA-----CGTAT---ACTGTAACTCTG-------AAAAGTT-G---AAAATAT--CACTTA--GTGCTCAAAC-ATTTCT-----TCT--T-A-ATTTCGTTTCTT----AATCAAATC-GAAACTGTACAGTTTGAA---------ATAAAAT--GCTTTCA--CTCC-TAAGA-------TGCA-------AA-----------TTCGATACGTTTTCT--TGGATT
gi|17 : tgtATTGGTTGTCATA------TATACAGCC-----ATAcccttggtcaa
gi|6 : tgtacactaagttcaatgatctgatatagaggacgaaatatttgttggaatcaacatgttaaacagacaccatacctggaatatacatgtacatatgtatttgtgaG-TTGTCATA------TTTACAACC-----ATATACTATATATTCTATTT--G--AGCAAAGTACATGTAT---ATTGTAAC-CTG-------AAAAAGTTG---AAAAT-TCACACTTAG-GTCCTGATATCGTTTCT-----TCTG-T-T-ATTTTGTAATTTTT--AACAAAATCGGAAACTGAAAAATTTGAAA-------------AT--GCATTTA--CTAC-TAAGACGAGAATT----------AAATAC-------T--------TTTTCC--TTGATCT----------T-ACCcatata
gi|8 : tatttttgtgaatttgTGTCATACTGTTTTATACAA---------ATT-AATAT-------TTT-A--AGAAAA-----CGTAT---ACTGTAACTCTG-------AAAAAGTTG---AAAATATCAC--TTAG--TGCTCAAACCATTTCT-----TCTG-T-A-ATTTCGTTA--TTCTTAATCAAATCGAAAACTGTACAGTTTGAA---------ATAAAAT--GCTTTCA--CTCC-TAAGA-------TGCA-------AA-----------TTCGATACGTTTTCT--TGGATTT----------ttgca
gi|2 : aTGTCAAA------GATACATCC-----ATATACAATAT-------TT--A--AGCAAA------GTAT---ACTGTAACcccttg
gi|1 : atactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtattacacaatattgtagttaggttactgttcatcagatttctaaaaaattcattgcaatattacattttctaccactaaaaataaataagagaataatactctattttatcaattaatgttttcaatactgctcttaataaacatagggcaatggactctaccaaaagagagcatttttgcatacaacgttcacgttaccttatatcgaggagtaaatttttattggaattaacatgtaaacagatgccatatctgaaatacatttgtaaattgggTCATA------CATACAACCGAATTATATGCAATTT-------TTTAA--AGCAAA------ATATTTTACTGTAACTCTG-------AAAAAGTTG---AAAATATCACACAT----TTCTC----TCTTTAT-----T--G-T-A--TTTCATT----TTGCAACCACACT-GAAACTGTAAAT---GAAATAGAAGGTATAAAAT--GC-------TTAT-TAAGA-------TTG--------AA-----------TAC------TTTTCT--AGGATTTACTGAGCAAAT-ACCGAGGAAGTATTTAAC----ACAAA--TAACACCT--GC-----AAA-C------AGA----------GA--CA--------CA-T----------GA--ATGTTATATttggaa
gi|11 : tattggaattaattaacagatgccatattcctgaaatatattttgagactggttgtcagaAATAT-------TT--TTTAGCAAA------GTAT---GTGGGAACTCTGGGA----AAAAAGT-CCGTAAATTGCCCCATTTAGAGTGGCTATAATATTTCTCTCTTTCTGGT-A-ATTTCGTTATTTTTTTCATCAATTTGG-A--TGTACATTTTGAAAT-AAGTTTGTAAAGCGAGCAAATAACCTGT-TAAAA-------T----------Atatatatatgtctctgctgcaaatcatgcatttcaacttttcttggttaaaaataataaaatgttttcatgttttggaaagctgaaagtgtctactttacagtgatgttatttttgtaactgtatttattacaacaaacaagatatagatctgtttttggctagtagaaatgcccactctgattt
gi|12 : tactactagtaAAA-----TATAT---ACCGTAAATCTGAATTCTAAAAAAAT-A---TATATATAACATGTAG-GTGATCATACCATT
gi|22 : -------AAAAAGTTA---AAAATATCACACTTAA-ATTTTCATACCATTTCT-----TCTG-TCATATTTCGTTA-TTTTTCATCCAAATTGGAAACTGTAAACTTTGAAATacaatgttttggaaagctacagtgatattattcttgaaactctctattaaagaaataagaaatctgctttcatattaggtaagtagaaaattccaccttgattgtgctttagctg
gi|24 : tccaAAGTTA---AAAATATCACACTTAG-GTGCTTATACCAATCCT----------T-A-----------TTTTTGAACCACATCGGAAACTATTAATTTTGAAATAATGT
gi|4 : TTTCT-----TCTG-T-C-ATTTTGTTA-TTTTTCAGCCAAATCGGAAACTGTAAATTTCGAAATAGAGTGTATAAAAT--GTTTTCA--CAAC-TAAGAT------T----------AAAGTAAAATACTT--------TTTTCT--TGGATTT----------C-ACCTTTCAAATA---TTTTG-TATGAA--T-ACA--T--GC-----AGT-C------AAATTT-------GA--CA--------C-----------------AAATTACACC-T--CA-------AAATCATATATTTTTGCAA---T----TTAA--T-------CAACTTT-------TCTT-GGTTACAAAATAATGCGAAG----TACTAAA---TAAAT---GCCATACCGCTCTGGAATATTGAAAGTGTATTT---------TTGATACTATCTATTTTTATATCTGCTTTCATATTAGGTActttactactga
gi|5 : TTTTTCAGTCAAATTAGAAACTGTAAATTTTGAAACAAAGTGCACAAAAT--GCTTTTT--CTACAAAAGA-------TGGAAATTAAAAA-----------C--------TTGTCTCATGGATTT----------C-ACTGAGCAAATA---ATCTA-TACAAA--T-ACA--T--GC-----AGT-C------AAATTTGA-----CA--CAAATTACATCCTC----------AA--AA-TCATATT-G--TATATTTTCAAAT--TA------ACCAACTTTTC--TTGG--TGATGAAAT-AATGTGGAGTACT-TTTGG----GAAGC--TG-AAAGTGTCTACTTTA---T-GGT---GAC--GTTATTC-------TTGACACTGCATCTG--------TTAAATCAAACAA----ggtagaaaatccacccttattgtgctttagccga
gi|13 : a----------AA-----------C--------TTTCCT----GATTC----------TGATCAAGCAAATA---ATTTG-TACAAA--C-ACA--TTCGC-----AAT-C------AAATTTGATAAACCACCCA--------CCTTTCTTGGTATCAA--A---TATACA-G--CA-------AA--GA-----------AG---TACCTTTAAACTGTTA---T-A-TG--------T-TG-GG----AAAGA--TG-AAA-T-TCTACTTCA---A-G-C---GAC--GTTATTC-------TTGAg
gi|10 : gatgaaattcaaGAACCAGTA---AA----TACTAAGTT-ATAG-T--GC-----ACC-TGTGATTAAACTT-------C--------------CTT----------AACCAACTT-TCTT-GTTCA-------AAA-GA-A------TACAAAT-TAC--TTAA--TGTTA---T-ACGGT-------T-TTTGG----AAAGC--TG-AAAGTGTTTACTTTAAAGT-GAT---GA---A--ATTC-------TTGAAAC--TATCTA--------TTACACCAAACAA----GATATTGTCTTCCATATTA
gi|1 : CTGCTGCAAA--T--CA--T--GC-----ATTTC------AACTTT-------T--------------CTT----------G-----GTTA---------A-------AAATAATA---------------A-----AA--TGTTTT--C-A-TGT-------T-TT-GG----AAAGC--TG-AAAGTGTCTACTTTA---C-AGT---GA--TGTTATTT-------TTGTAACTGTATTTA--------TTACAACAAACAA----GATAT
gi|12 : tattggaattaattaacagatgccatattcctgaaatatattttgagactggttgtcagatcatacatacaaccgaattatatgcaattttttaaagcaaaatattttactgtaactctgaaaaagttgaaaatatcacacatttctctctttattgtatttcattttgcaaccacactgaaactgtaaatgaaatagaaggtataaaatgcttattaagattgaatacttttctaggatttactgagcaaataccgaggaagtatttaacacaaataacacctgcaaacagagacacatgaatgttatattatatatatgtctAAA--T-ATA--T--ACCGTAAATC-T------GAATT-----------------------CTA----------AA--AAAATATATATA--TA-------ACATG-TA------GGTGA---T-C--ATAC--CATTA---C-AATGT-------T-TT-GG----AAAGC--T--ACAGTG---------------------A--TATTATTC-------TTGAAACTCT--CTA--------TTAAAG-AAATAA----GAAATCTGCTTTCATATTAGGTAAagatctgtttttggctagtagaaatgcccactctgattt
gi|16 : TA-A--CA-------AGAAAATG------TAAAG---CAC--TTAA--TCCTAA--T-ACTGT-------T-TC-GA----AACGC----------GTCTACTTAA---C-AGT---GA--TGGTATAC-------TTGAAATTGTGTCCA--------TTAAAGGAAACAA----TATTACTGCTTCCATATTAgtagaaaattccaccttgattgtgctttagctg
gi|21 : attaaccaacttttcgtggGTCTACT------T-GACAGTGA--TGTTTCTC-------TTGAAAATGTATCTA--------TTAAAACAAACAA----AATATCTACTTTTATATTAGGTAgg
gi|19 : TGTTATTC-------TTGAAACAGTATCCATAAATTATTTAAAACAAACAA----GATATggatgaaaattccaccctagttgttttt
gi|25 : aagctgaaaagtgtaaacagtgaTTTTTC-------TTGAAACTGTATGAA--------TTAAAACAAACAA----GATATCTGCTTCCTTATTattaggtacatctaagtagaaaagtccaccctgattttgttt
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TGTAGCATAGCTTTTTCAAACCTAAAGAATAAAAAGAAAATATACTGCTGTTTTATAATTTATGTATTTGAATACCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTCTAACACTCTGATATCATGGAGTACATACATTTTTTGAATTTACATGTTCAATAGGATGTTCATACCTGAATATTATTCCGTAAATTATTTGTCATCA
Unaligned ( gi|14 ): TTTTTACAAACTCATTGAAGTATAAAAAGAGAATGATTATTCCATTTTATAATTATTGTTTTCAATACTGTTCTTCTACTTGGGCTACGCGACCTCTACAAAAAAGGTGGCGCCTTTTTGTACGCAAGTTCCAACTACGGGTGAATATAGGGAAGTAAA
Unaligned ( gi|15 ): AGCAAATAACCTGTTAAAATACATGCAGTCCACATTTGACAAAAAATACAACTTCAATTTATATATTTTTTTCAATGTAACCGACTTTTCTGGTAGCAGATATGCCGCAATACTTGTGATAATGTAAAGAAAATACTTTA
Unaligned ( gi|18 ): ATCAATTGATGTTTTCAATACTGCTCTTACTAAACAAGGCTACGAACTCGACAAAAAGTGAACATTTTTTGCATACAAAGTTCTAATAATAAAAATTCAGATATTTTTATTGGAATTAACATGTTAAC
Unaligned ( gi|20 ): GTTTTCAATACTGCCCTTACTAAACATGGGGCTTCGGAATCTACAAAAGGTGAGCATTTTTGCCCAATAATCTGATATCAAGGAATGGTTTTAATTAGAATAACCATG
Unaligned ( gi|23 ): ATGCAAATATTATGTACTTTTGACACAAACCCCACACCCAAAATGTTTTTTTTTCAAACTCACCAACTCTTCTTAGTAACAAAATGATGCAAAGTTTT
Unaligned ( gi|26 ): AATATTTAATGCCCCTCAAAGCAGAGACATATGTTACATGTATATATGTCTCTGCTGC
Unaligned ( gi|27 ): GGATTTTTAGTGATTTCTACCTTGAGTTTTAGCAGTAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 1111111 111111 222222 111 11 11111 111111 2222222222 99999999999999999999999999999999 11 2222222222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 222 11111111
lowQualScore : 0 666666 5555555 77 666666 5 5 888888 000 0 888 5 5 2 22 0 3 1 55555 55 777777 99 4 0 0 1111111111 5 5 88888888888888888888888888888888 777 00 9999999999 6 5 66 66 1 5 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0000 66 4 55 0 2 66 666 666 7777 44444444 8888 9999 4 1
lowQualScore : . ...... ....... .. ...... . . ...... ... . ... . . . .. . . . ..... .. ...... .. . . . .......... . . ................................ ... .. .......... . . .. .. . . .............................................................................................................................................................. .... .. . .. . . .. ... ... .... ........ .... .... . .
lowQualScore : 0 444444 7777777 77 444444 7 7 000000 000 1 888 0 0 5 66 2 4 4 66666 66 666666 55 1 7 6 3333333333 4 0 11111111111111111111111111111111 222 88 2222222222 7 0 99 99 0 0 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6666 11 4 66 7 4 99 777 333 7777 55555555 5555 4444 4 1
consensus : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTAC-TAAGAT-G-A-AA---------T--AA-A-C-------TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCT-GTACAAAT-ACA--T--GCAGT-CAAATTT-------NA--CA--------CCTT----------AA--AAGTTATATN-G--CA-------AAATG------------AT-A------TGCAA---T---AC--TT------------AA--TGTT---A-TACTGT-------T-T--------T-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
Reference ( family-4034 ) : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTAC-TAAGAT-G-A-AA---------T-------C-------TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCT-GTACAAAT-ACA--T--GCANT-CAAATTT-------CA--CA--------CCTT----------AA--AAGTTATATN-G--CA-------AAATG------------AT-A------TGCAA---T---AC--TT------------AA--TGTT---A-CACTGT-------T-T--------T-GG----AAAGC--TG-AAA-GTGTCTACTTNACGGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
gi|1 : TCATA------CATACAACCGAATTATATGCAATTT------TTTA-AAGCAAA------ATATTTTACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACAC----------------ATTTCTC----TCTT-T-ATTGTATTTC---A--TTTTGCAACCACA-CTGAAACTGTAAAT---GAAATAGAAGGTATAAAATGCTT-----AT-TAAGAT-T-G-AA---------TA------C-------TTTTCT--AGGATTT--ACTGAGCAAATACCGAGGAAGTATTTAACACAAATAACACCT--GCAAA-CAGA----------GA--CA--------CA-T----------GA--ATGTTATATT-A--TAT------ATATGTCTCTGCTGCAAATCA------TGCAT---TTCAAC--TTTTCTTGGTTAAAAA--TAAT---A-AAATGT-------T-TTCATGTTTT-GG----AAAGC--TG-AAA-GTGTCTACTTTACAGT--GA--TGTTAT----TTTTGTAACTGTATTTA--------TTACAACAAACAA----GATATAGATCTG-TTT
gi|10 : tattggaattaattaacagatgccatattcctgaaatatattttgagactggttgtcaga-ACC--T--GTGAT-TAAACTT-------C--------------CTT----------AACCAACTT-TCTT-GTTCA-------AAA-G------------A--A------TACAAAT-T---AC--TT------------AA--TGTT---A-TACGGT-------T-T--------TTGG----AAAGC--TG-AAA-GTGTTTACTTTAAAGT--GA--TGAAAT----TCTTGAAACT--ATCTA--------TTACACCAAACAA----GAT----AT-TGTCTTCCATATTAttggctagtagaaatgcccactctgattt
gi|11 : gaaccagtaaatactaagttatagtgcAATAT------TTTTTA-GCAAA------GTAT---GTGGGAACTCTGGGAAAAAAGTCCGTAAATTGCCCCATTTAGAGTGGCTATAATATTTCTCTCTTTCTGGT-A----ATTTCGTTATTTTTTTC-ATCAATTTGGA---TGTACATTTTGAAAT-AAGTTTGTAAA
gi|12 : tactactagtaAAAT-ATA--T--ACCGT--AAATCT-------GA--AT--------TCTA----------AA--AAAATATATATA--TA-------ACATG-------------T-A------GGTGA---T----C--AT------------AC--CATT---A-CAATGT-------T-T--------T-GG----AAAGC--T-----------------ACAGT--GA--TATTAT----TCTTGAAACTCT--CTA--------TTAAAG-AAATAA----GAA----ATCTG-CTTTCATATTAGGTAAgcgagcaaataacctgttaaaata
gi|13 : GAT-G-A-AA---------TTCAAAA-C-------TTTCCT----GATTCTGATCAAGCAAATA----------ATTT-GTACAAAC-ACA--TTCGCAAT-CAAATTTGATAAACCACCCA--------CCTTTCTTGGTATCAA--A---TATACA-G--CA-------AA--G------------A------------AG---T---ACCTTT------------AAACTGTT---A-TA-TG--------T-T--------G-GG----AAAGA--TG-AAA--T-TCTACTTCA-AGC--GAC--GTTAT----TCTTGAgtagaaaattccaccttgattgtgctttagctg
gi|15 : AGCAAATA----------ACCT-GTTAAAAT-ACA--T--GCAGTCCACATTT-------GA--CA--------
gi|16 : TA-A--CA-------AGAAA------------AT-G------TAAAG---C---AC--TT------------AA--TCCT---AATACTGT-------T-T--------C-GA----AACGC-----------GTCTACTTAACAGT--GA--TGGTAT----ACTTGAAATTGTGTCCA--------TTAAAGGAAACAA----TAT----TACTG-CTTCCATATTAGGaaaaatacaacttcaatttatatatttttttcaatgtaaccgacttttctggtagcagatatgccgcaatacttgtgataatgtaaagaaaatacttta
gi|17 : attaaccaacttttcgtggATTGGTTGTCATA------TATACAGCC-----ATA
gi|19 : tgtacactaagttcaatgatctgatatagaggacgaaatatttgttggaatcaacatgttaaacagacaccatacctggaatatacatgtacatatgtatttgtgaAAGC--TG-AAAAGTGT--A---AACAGT--GA--TGTTAT----TCTTGAAACAGTATCCATAAATTATTTAAAACAAACAA----GAT---------------ATATTAGGTAcatata
gi|2 : TGTCAAA------GATACATCC-----ATATACAATA-------TTTA-A-GCAAA------GTAT---ACTGTAACTTGG---AAcatctaagtagaaaagtccaccctgattttgttt
gi|21 : atactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtattacacaatattgtagttaggttactgttcatcagatttctaaaaaattcattgcaatattacattttctaccactaaaaataaataagagaataatactctattttatcaattaatgttttcaatactgctcttaataaacatagggcaatggactctaccaaaagagagcatttttgcatacaacgttcacgttaccttatatcgaggagtaaatttttattggaattaacatgtaaacagatgccatatctgaaatacatttgtaaattgggGTCTACTTGACAGT--GA--TGTTTC----TCTTGAAAATGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTTATATTAGGTA
gi|22 : TCCA---AAAAAGTT-AAAAAT-ATCACACTTAA-ATTTTCATACCATTTCT-----TCTG-TCAT---ATTTCGTTA--TTTTTCATCCAAATTGGAAACTGTAAACTTTGAAATggatgaaaattccaccctagttgttttt
gi|24 : AAGTT-AAAAAT-ATCACACTTAG-GTGCTTATACCAATCC------------------------TTA--TTTTTGAACCACATCGGAAACTATTAATTTTGAAATAA--TGT--------CTTT-ACTAC-TGA
gi|25 : TTTT----TCTTGAAACTGTATGAA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCTTATTTAGTA
gi|3 : CATTG-TTGTCATA------TATACAACC-----ATATTCAATAT------TT-A-A-GCAAA-----CGTAT---ACCGTGACGCTG---AAAAAGT--AAAAAT-ATCACACTTAG-GTGCTCATGCTATTTCT-----TCTG-T-A----ATTTCGTTAC-TTTTTCAATCAAATTAGTAACTGTACATTTTGAAATAAAGTGTATAAAATGCATTTACTAT-TAAGAT-----AA---------T---------------TTTTCT--TGGATTTT-ACCGAACAAGTA----------AACT-GTACAAAT-ACA--T--GCATC-CAAATTT-------CA--CA--------CCTT----------AA--AAGTTATATA-G--CA-------AGATG------------AT-A------TGCAA---T---AC--TT------------AA--TGTT---G-CACTGT-------T-T--------T-GG----AAAGT--TG-AAA-GTGTTTACTCTATGAC--GACTTATTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTCATATTATGTAAgtaataatttcttccctgattgtgtttaag
gi|4 : ataaTTTCT-----TCTG-T-C----ATTTTGTTA--TTTTTCAGCCAAATCGGAAACTGTAAATTTCGAAATAGAGTGTATAAAATGTTTTCACAAC-TAAGAT-T-A-AAGTAAAATACT-------T-------TTTTCT--TGGATTTC-ACCTTTCAAATA----------TTTT-GTATGAAT-ACA--T--GCAGT-CAAATTT-------GA--CA--------C-----------------AAATTACACC-T--CA-------AAATC------------AT-ATATTTTTGCAA---T-------TT------------AA----TC---A--ACTTT-------TCT--------T-GGTTACAAAATAATGCGAA-GTA-CTAAATAAATGCCATAC-CGCTCTGGAATATTGAAAGTGTATTT---------TTGATACTATCTATTTTTAT----ATCTG-CTTTCATATTAGGTAt
gi|5 : A--TTTTTCAGTCAAATTAGAAACTGTAAATTTTGAAACAAAGTGCACAAAATGCTTTTTCTACAAAAGATGG-A-AA---------TTAAAAA-C-------TTGTCTCATGGATTTC-ACTGAGCAAATA----------ATCT-ATACAAAT-ACA--T--GCAGT-CAAATTTGA-----CA--CAAATTACATCCTC----------AA--AA-TCATATT-G--TATATTTTCAAAT--------------T-A------ACCAACTTT---TC--TT------------GG--TGATGAAA-TAATGTGGAGTACT-T--------TTGG----GAAGC--TG-AAA-GTGTCTACTTTATGGT--GAC--GTTAT----TCTTGACACTGCATCTG--------TTAAATCAAACAA----Gggtagaaaatccacccttattgtgctttagccga
gi|6 : G-TTGTCATA------TTTACAACC-----ATATACTATATATTCTATTTG-A-GCAAAGTACATGTAT---ATTGTAAC-CTG---AAAAAGTT-GAAAAT--TCACACTTAG-GTCCTGATATCGTTTCT-----TCTG-T-T----ATTTTGTAA--TTTTT-AACAAAATCGGAAACTGAAAAATTTGAAA-------------ATGCATTTACTAC-TAAGAC-G-AGAA---------TTAAATACT-------TTTTCC--TTGATCTT-ACC
gi|8 : tatttttgtgaatttgTGTCATACTGTTTTATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-AT--CACTTA--GTGCTCAAACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTCTT-AATCAAATCGAAAACTGTACAGTTTGAA---------ATAAAATGCTTTCACTCC-TAAGAT-GCA-AA---------T-------TCGATACGTTTTCT--TGGATTTttgca
gi|9 : aCATTA-CTGT--TT------TATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG----AAAAGTT-GAAAAT-AT--CACTTA--GTGCTCA-AACATTTCT-----TCT--T-A----ATTTCG-----TTTCTTAATCAAATC-GAAACTGTACAGTTTGAA---------ATAAAATGCTTTCACTCC-TAAGAT-GCA-AA---------T-------TCGATACGTTTTCT--TGGATTcccttg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTAGCATAGCTTTTTCAAACCTAAAGAATAAAAAGAAAATATACTGCTGTTTTATAATTTATGTATTTGAATACCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTCTAACACTCTGATATCATGGAGTACATACATTTTTTGAATTTACATGTTCAATAGGATGTTCATACCTGAATATTATTCCGTAAATTATTTGTCATCA
Unaligned ( gi|14 ): TTTTTACAAACTCATTGAAGTATAAAAAGAGAATGATTATTCCATTTTATAATTATTGTTTTCAATACTGTTCTTCTACTTGGGCTACGCGACCTCTACAAAAAAGGTGGCGCCTTTTTGTACGCAAGTTCCAACTACGGGTGAATATAGGGAAGTAAA
Unaligned ( gi|18 ): ATCAATTGATGTTTTCAATACTGCTCTTACTAAACAAGGCTACGAACTCGACAAAAAGTGAACATTTTTTGCATACAAAGTTCTAATAATAAAAATTCAGATATTTTTATTGGAATTAACATGTTAAC
Unaligned ( gi|20 ): GTTTTCAATACTGCCCTTACTAAACATGGGGCTTCGGAATCTACAAAAGGTGAGCATTTTTGCCCAATAATCTGATATCAAGGAATGGTTTTAATTAGAATAACCATG
Unaligned ( gi|23 ): ATGCAAATATTATGTACTTTTGACACAAACCCCACACCCAAAATGTTTTTTTTTCAAACTCACCAACTCTTCTTAGTAACAAAATGATGCAAAGTTTT
Unaligned ( gi|26 ): AATATTTAATGCCCCTCAAAGCAGAGACATATGTTACATGTATATATGTCTCTGCTGC
Unaligned ( gi|27 ): GGATTTTTAGTGATTTCTACCTTGAGTTTTAGCAGTAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 1111111 111111 222222 111 11 11111 111111 2222222222 666666666666666666666 2222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 222 11111111
lowQualScore : 0 666666 5555555 77 666666 5 5 888888 000 0 888 5 5 2 22 0 3 1 55555 55 777777 99 4 0 0 4 1111111111 5 4 333333333333333333333 777 6 9999999999 6 5 66 66 5 5 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0000 66 4 55 0 2 3 666 666 7777 44444444 8888 9999 4 1
lowQualScore : . ...... ....... .. ...... . . ...... ... . ... . . . .. . . . ..... .. ...... .. . . . . .......... . . ..................... ... . .......... . . .. .. . . .............................................................................................................................................................. .... .. . .. . . . ... ... .... ........ .... .... . .
lowQualScore : 0 444444 7777777 77 444444 7 7 000000 000 1 888 0 0 5 66 2 4 4 66666 66 666666 55 1 7 6 8 3333333333 4 4 000000000000000000000 222 7 2222222222 7 0 99 99 0 9 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6666 11 4 66 7 4 2 777 333 7777 55555555 5555 4444 4 1
consensus : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GATG-AAA--TTCGAAA-----C-TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCT-GTACAAAT-ACA--T--GCAGT-CAAATTTGA---------CAC---------CTT----------AA--AAATTATATN-G--CA-------AAATG------------AT-A------TGCAA---T---AC--TT------------AA--TGTT---A-TACTGT--------T-T--------T-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
Reference ( family-4034 ) : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GATG-AAA--T---AAA-----C-TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCT-GTACAAAT-ACA--T--GCAGT-CAAATTTNA---------CAC---------CTT----------AA--AAGTTATATN-G--CA-------AAATG------------AT-A------TGCAA---T---AC--TT------------AA--TGTT---A-TACTGT--------T-T--------T-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
gi|1 : TCATA------CATACAACCGAATTATATGCAATTT------TTTA-AAGCAAA------ATATTTTACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACAC----------------ATTTCTC----TCTT-T-ATTGTATTTC---A--TTTTGCAACCACA-CTGAAACTGTAAA---TGAAATAGAAGGTATAAAATGCT-----TATTAA-GATT-GAA--T-----A-----C-TTTTCT--AGGA-TTT-ACTGAGCAAATACCGAGGAAGTATTTAACACAAATAACACCT--GCAAA-CAGA---GA---------CAC---------A-T----------GA--ATGTTATATT-A--TAT------ATATGTCTCTGCTGCAAATCA------TGCAT---TTCAAC--TTTTCTTGGTTAAAAA--TAAT---A-AAATGT--------T-TTCATGTTTT-GG----AAAGC--TG-AAA-GTGTCTACTTTACAGT--GA--TGTTAT----TTTTGTAACTGTATTTA--------TTACAACAAACAA----GATATAGATCTG-TTT
gi|10 : tattggaattaattaacagatgccatattcctgaaatatattttgagactggttgtcaga-ACC--T--GTGAT-TAAACTT-------------C---------CTT----------AACCAACTT-TCTT-GTTCA-------AAA-G------------A--A------TACAAAT-T---AC--TT------------AA--TGTT---A-TACGGT--------T-T--------TTGG----AAAGC--TG-AAA-GTGTTTACTTTAAAGT--GA--TGAAAT----TCTTGAAACT--ATCTA--------TTACACCAAACAA----GAT----AT-TGTCTTCCATATTAttggctagtagaaatgcccactctgattt
gi|11 : gaaccagtaaatactaagttatagtgcAATAT------TTTTTA-GCAAA------GTAT---GTGGGAACTCTGGGAAAAAAGTCCGTAAATTGCCCCATTTAGAGTGGCTATAATATTTCTCTCTTTCTGGT-A----ATTTCGTTATTTTTTTC-ATCAATTTGGA---TGTACATTTTGAAAT-AAGTTTGTAAA
gi|12 : tactactagtaAAAT-ATA--T--ACCGT--AAATCTGA---------ATT---------CTA----------AA--AAAATATATATA--TA-------ACATG-------------T-A------GGTGA---T----C--AT------------AC--CATT---A-CAATGT--------T-T--------T-GG----AAAGC--T-----------------ACAGT--GA--TATTAT----TCTTGAAACTCT--CTA--------TTAAAG-AAATAA----GAA----ATCTG-CTTTCATATTAGGTAAgcgagcaaataacctgttaaaata
gi|13 : -GATG-AAA--TTCAAAA-----C-TTTCCT----GATTCTGATCAAGCAAATA----------ATTT-GTACAAAC-ACA--TTCGCAAT-CAAATTTGATAAACCACCCAC---------CTTTCTTGGTATCAA--A---TATACA-G--CA-------AA--G------------A------------AG---T---ACCTTT------------AAACTGTT---A-TA-TG---------T-T--------G-GG----AAAGA--TG-AAA--T-TCTACTTCA-AGC--GAC--GTTAT----TCTTGAgtagaaaattccaccttgattgtgctttagctg
gi|15 : AGCAAATA----------ACCT-GTTAAAAT-ACA--T--GCAGTCCACATTTGA---------CA
gi|16 : TA-A--CA-------AGAAA------------AT-G------TAAAG---C---AC--TT------------AA--TCCT---AATACTGT--------T-T--------C-GA----AACGC-----------GTCTACTTAACAGT--GA--TGGTAT----ACTTGAAATTGTGTCCA--------TTAAAGGAAACAA----TAT----TACTG-CTTCCATATTAGGaaaaatacaacttcaatttatatatttttttcaatgtaaccgacttttctggtagcagatatgccgcaatacttgtgataatgtaaagaaaatacttta
gi|17 : attaaccaacttttcgtggATTGGTTGTCATA------TATACAGCC-----ATA
gi|19 : tgtacactaagttcaatgatctgatatagaggacgaaatatttgttggaatcaacatgttaaacagacaccatacctggaatatacatgtacatatgtatttgtgaAAGC--TG-AAAAGTGT--A---AACAGT--GA--TGTTAT----TCTTGAAACAGTATCCATAAATTATTTAAAACAAACAA----GAT---------------ATATTAGGTAcatata
gi|2 : TGTCAAA------GATACATCC-----ATATACAATA-------TTTA-A-GCAAA------GTAT---ACTGTAACTTGG---AAcatctaagtagaaaagtccaccctgattttgttt
gi|21 : atactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtattacacaatattgtagttaggttactgttcatcagatttctaaaaaattcattgcaatattacattttctaccactaaaaataaataagagaataatactctattttatcaattaatgttttcaatactgctcttaataaacatagggcaatggactctaccaaaagagagcatttttgcatacaacgttcacgttaccttatatcgaggagtaaatttttattggaattaacatgtaaacagatgccatatctgaaatacatttgtaaattgggGTCTACTTGACAGT--GA--TGTTTC----TCTTGAAAATGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTTATATTAGGTA
gi|22 : TCCA---AAAAAGTT-AAAAAT-ATCACACTTAA-ATTTTCATACCATTTCT-----TCTG-TCAT---ATTTCGTTA--TTTTTCATCCAAATTGGAAACTGTAAACTTTGAAATggatgaaaattccaccctagttgttttt
gi|24 : AAGTT-AAAAAT-ATCACACTTAG-GTGCTTATACCAATCC------------------------TTA--TTTTTGAACCACATCGGAAACTATTAATTTTGAAATAA--TGT--------CTTT-ACTACTGA-
gi|25 : TTTT----TCTTGAAACTGTATGAA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCTTATTTAGTA
gi|3 : CATTG-TTGTCATA------TATACAACC-----ATATTCAATAT------TT-A-A-GCAAA-----CGTAT---ACCGTGACGCTG---AAAAAGT--AAAAAT-ATCACACTTAG-GTGCTCATGCTATTTCT-----TCTG-T-A----ATTTCGTTAC-TTTTTCAATCAAATTAGTAACTGTACATTTTGAAATAAAGTGTATAAAATGCATTTACTATTAA-GAT------------AA-----T-TTTTCT--TGGATTTT-ACCGAACAAGTA----------AACT-GTACAAAT-ACA--T--GCATC-CAAATTTCA---------CAC---------CTT----------AA--AAGTTATATA-G--CA-------AGATG------------AT-A------TGCAA---T---AC--TT------------AA--TGTT---G-CACTGT--------T-T--------T-GG----AAAGT--TG-AAA-GTGTTTACTCTATGAC--GACTTATTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTCATATTATGTAAgtaataatttcttccctgattgtgtttaag
gi|4 : ataaTTTCT-----TCTG-T-C----ATTTTGTTA--TTTTTCAGCCAAATCGGAAACTGTAAATTTCGAAATAGAGTGTATAAAATGTTTTCACAACTAA-GATT-AAAG-T---AAAATACTT-TTTTCT--TGGATTTC-ACCTTTCAAATA----------TTTT-GTATGAAT-ACA--T--GCAGT-CAAATTTGA---------CAC--------------------------AAATTACACC-T--CA-------AAATC------------AT-ATATTTTTGCAA---T-------TT------------AA----TC---A--ACTTT--------TCT--------T-GGTTACAAAATAATGCGAA-GTA-CTAAATAAATGCCATAC-CGCTCTGGAATATTGAAAGTGTATTT---------TTGATACTATCTATTTTTAT----ATCTG-CTTTCATATTAGGTAt
gi|5 : A--TTTTTCAGTCAAATTAGAAACTGTAAATTTTGAAACAAAGTGCACAAAATGCTTTTTCTACAAAAGATGGAAA--TTAAAAA-----C-TTGTCTCATGGATTTC-ACTGAGCAAATA----------ATCT-ATACAAAT-ACA--T--GCAGT-CAAATTTGA---------CACAAATTACATCCT----------CA--AAATCATATT-G--TATATTTTCAAAT--------------T-A------ACCAACTTT---TC--TT------------GG--TGATGAAA-TAATGTGGAGTACTT-T--------T-GG----GAAGC--TG-AAA-GTGTCTACTTTATGGT--GAC--GTTAT----TCTTGACACTGCATCTG--------TTAAATCAAACAA----Gggtagaaaatccacccttattgtgctttagccga
gi|6 : G-TTGTCATA------TTTACAACC-----ATATACTATATATTCTATTTG-A-GCAAAGTACATGTAT---ATTGTAAC-CTG---AAAAAGTT-GAAAAT--TCACACTTAG-GTCCTGATATCGTTTCT-----TCTG-T-T----ATTTTGTAA--TTTTT-AACAAAATCGGAAACTGAAAAATTTGAAA-------------ATGCATTTACTACTAA-GACG-AGAATT---AAATAC--T-TTTTCC--TTGATCTT-ACC
gi|8 : tatttttgtgaatttgTGTCATACTGTTTTATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-AT--CACTTA--GTGCTCAAACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTCTT-AATCAAATCGAAAACTGTACAGTTTGAA---------ATAAAATGCTTTCACTCCTAA-GATGCAAA--TTCGATA-----CGTTTTCT--TGGATTTttgca
gi|9 : aCATTA-CTGT--TT------TATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG----AAAAGTT-GAAAAT-AT--CACTTA--GTGCTCA-AACATTTCT-----TCT--T-A----ATTTCG-----TTTCTTAATCAAATC-GAAACTGTACAGTTTGAA---------ATAAAATGCTTTCACTCCTAA-GATGCAAA--TTCGATA-----CGTTTTCT--TGGATTcccttg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTAGCATAGCTTTTTCAAACCTAAAGAATAAAAAGAAAATATACTGCTGTTTTATAATTTATGTATTTGAATACCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTCTAACACTCTGATATCATGGAGTACATACATTTTTTGAATTTACATGTTCAATAGGATGTTCATACCTGAATATTATTCCGTAAATTATTTGTCATCA
Unaligned ( gi|14 ): TTTTTACAAACTCATTGAAGTATAAAAAGAGAATGATTATTCCATTTTATAATTATTGTTTTCAATACTGTTCTTCTACTTGGGCTACGCGACCTCTACAAAAAAGGTGGCGCCTTTTTGTACGCAAGTTCCAACTACGGGTGAATATAGGGAAGTAAA
Unaligned ( gi|18 ): ATCAATTGATGTTTTCAATACTGCTCTTACTAAACAAGGCTACGAACTCGACAAAAAGTGAACATTTTTTGCATACAAAGTTCTAATAATAAAAATTCAGATATTTTTATTGGAATTAACATGTTAAC
Unaligned ( gi|20 ): GTTTTCAATACTGCCCTTACTAAACATGGGGCTTCGGAATCTACAAAAGGTGAGCATTTTTGCCCAATAATCTGATATCAAGGAATGGTTTTAATTAGAATAACCATG
Unaligned ( gi|23 ): ATGCAAATATTATGTACTTTTGACACAAACCCCACACCCAAAATGTTTTTTTTTCAAACTCACCAACTCTTCTTAGTAACAAAATGATGCAAAGTTTT
Unaligned ( gi|26 ): AATATTTAATGCCCCTCAAAGCAGAGACATATGTTACATGTATATATGTCTCTGCTGC
Unaligned ( gi|27 ): GGATTTTTAGTGATTTCTACCTTGAGTTTTAGCAGTAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 1111111 111111 222222 111 11111 111111 111111111 22222222222222222 2222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 222 11111111
lowQualScore : 0 666666 5555555 77 666666 5 5 888888 000 0 888 5 5 777 0 3 1 55555 55 777777 99 4 0 0 666666666 5 4 44444444444444444 777 6 9999999999 6 5 66 66 5 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 5 0000 66 4 55 0 2 3 666 666 7777 44444444 8888 9999 4 1
lowQualScore : . ...... ....... .. ...... . . ...... ... . ... . . ... . . . ..... .. ...... .. . . . ......... . . ................. ... . .......... . . .. .. . .......................................................................................................................................... . . .... .. . .. . . . ... ... .... ........ .... .... . .
lowQualScore : 0 444444 7777777 77 444444 7 7 000000 000 1 888 0 0 888 2 4 4 66666 66 666666 55 1 7 6 444444444 4 4 00000000000000000 222 7 2222222222 7 0 99 99 0 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 6666 11 4 66 7 4 2 777 333 7777 55555555 5555 4444 4 1
consensus : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GATG-A-AATTCGAN-AC--TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCT-GTACAAAT-ACA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTATAT------------N-G--CA-------AA--ATG-ATA------TGCAA-T-TAC--TT-------AA--TGTT---A-TACTGT--------T-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
Reference ( family-4034 ) : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GATG-A-AATTCGAA-AC--TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCT-GTACAAAT-ACA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTATAT------------N-G--CA-------AA--ATG-ATA------TGCAA---TAC--TT-------AA--TGTT---A-TACTGT--------T-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
gi|1 : TCATA------CATACAACCGAATTATATGCAATTT------TTTA-AAGCAAA------ATATTTTACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACAC----------------ATTTCTC----TCTT-T-ATTGTATTTC---A--TTTTGCAACCACA-CTGAAACTGTAAAT---GAAATAGAAGGTATAAAATGCT-----TATTAA-GATT-G-AAT------AC--TTTTCT--AGGA-TTT-ACTGAGCAAATACCGAGGAAGTATTTAACACAAATAACACCT--GCAAA-CAGA---GA---------CAC---------AT-------GAATGTTATATTATATATATGTCTCTGCT-G--CA-------AATCATGCAT-------TTCAACTTTTC--TTGGTTAAAAA--TAAT---A-AAATGTTTTCATGTT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTTACAGT--GA--TGTTAT----TTTTGTAACTGTATTTA--------TTACAACAAACAA----GATATAGATCTG-TTT
gi|10 : tattggaattaattaacagatgccatattcctgaaatatattttgagactggttgtcaga-ACC--T--GTGAT-TAAACTT-------------C---------CT-------TAACC--AACTT-TCT------------T-GTTCA-------AA--A-G-A-A------TACAAAT-TAC--TT-------AA--TGTT---A-TACGGT--------T-TTTGG----AAAGC--TG-AAA-GTGTTTACTTTAAAGT--GA--TGAAAT----TCTTGAAACT--ATCTA--------TTACACCAAACAA----GAT----AT-TGTCTTCCATATTAttggctagtagaaatgcccactctgattt
gi|11 : gaaccagtaaatactaagttatagtgcAATAT------TTTTTA-GCAAA------GTAT---GTGGGAACTCTGGGAAAAAAGTCCGTAAATTGCCCCATTTAGAGTGGCTATAATATTTCTCTCTTTCTGGT-A----ATTTCGTTATTTTTTTC-ATCAATTTGGA---TGTACATTTTGAAAT-AAGTTTGTAAA
gi|12 : tactactagtaAAAT-ATA--T--ACCGT--AAATCTGA---------ATT---------CT-------AAA----AAAATATAT------------ATA--TA-------AC--ATG--TA------GGTGA---T-C--AT-------AC--CATT---A-CAATGT--------T-TT-GG----AAAGC--T-----------------ACAGT--GA--TATTAT----TCTTGAAACTCT--CTA--------TTAAAG-AAATAA----GAA----ATCTG-CTTTCATATTAGGTAAgcgagcaaataacctgttaaaata
gi|13 : -GATG-A-AATTCAAA-AC--TTTCCT----GATTCTGATCAAGCAAATA----------ATTT-GTACAAAC-ACA--TTCGCAAT-CAAATTTGATAAACCACCCAC---------CTTTCTTGGTAT----CAAATATAC------------A-G--CA-------AA----G-A-----------AG---TACCTTT-------AAACTGTT---A-TA-TG---------T-TG-GG----AAAGA--TG-AAA--T-TCTACTTCA-AGC--GAC--GTTAT----TCTTGAgtagaaaattccaccttgattgtgctttagctg
gi|15 : AGCAAATA----------ACCT-GTTAAAAT-ACA--T--GCAGTCCACATTTGA---------CA--------------------AA----AAAT
gi|16 : T------------A-A--CA-------AG--AAA-ATG------TAAAG---CAC--TT-------AA--TCCT---AATACTGT--------T-TC-GA----AACGC-----------GTCTACTTAACAGT--GA--TGGTAT----ACTTGAAATTGTGTCCA--------TTAAAGGAAACAA----TAT----TACTG-CTTCCATATTAGGacaacttcaatttatatatttttttcaatgtaaccgacttttctggtagcagatatgccgcaatacttgtgataatgtaaagaaaatacttta
gi|17 : attaaccaacttttcgtggATTGGTTGTCATA------TATACAGCC-----ATA
gi|19 : tgtacactaagttcaatgatctgatatagaggacgaaatatttgttggaatcaacatgttaaacagacaccatacctggaatatacatgtacatatgtatttgtgaAAGC--TG-AAAAGTGT--A---AACAGT--GA--TGTTAT----TCTTGAAACAGTATCCATAAATTATTTAAAACAAACAA----GAT---------------ATATTAGGTAcatata
gi|2 : TGTCAAA------GATACATCC-----ATATACAATA-------TTTA-A-GCAAA------GTAT---ACTGTAACTTGG---AAcatctaagtagaaaagtccaccctgattttgttt
gi|21 : atactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtattacacaatattgtagttaggttactgttcatcagatttctaaaaaattcattgcaatattacattttctaccactaaaaataaataagagaataatactctattttatcaattaatgttttcaatactgctcttaataaacatagggcaatggactctaccaaaagagagcatttttgcatacaacgttcacgttaccttatatcgaggagtaaatttttattggaattaacatgtaaacagatgccatatctgaaatacatttgtaaattgggGTCTACTTGACAGT--GA--TGTTTC----TCTTGAAAATGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTTATATTAGGTA
gi|22 : TCCA---AAAAAGTT-AAAAAT-ATCACACTTAA-ATTTTCATACCATTTCT-----TCTG-TCAT---ATTTCGTTA--TTTTTCATCCAAATTGGAAACTGTAAACTTTGAAATggatgaaaattccaccctagttgttttt
gi|24 : AAGTT-AAAAAT-ATCACACTTAG-GTGCTTATACCAATCC------------------------TTA--TTTTTGAACCACATCGGAAACTATTAATTTTGAAATAA--TGT--------CTTT-ACTACTGA-
gi|25 : TTTT----TCTTGAAACTGTATGAA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCTTATTTAGTA
gi|3 : CATTG-TTGTCATA------TATACAACC-----ATATTCAATAT------TT-A-A-GCAAA-----CGTAT---ACCGTGACGCTG---AAAAAGT--AAAAAT-ATCACACTTAG-GTGCTCATGCTATTTCT-----TCTG-T-A----ATTTCGTTAC-TTTTTCAATCAAATTAGTAACTGTACATTTTGAAATAAAGTGTATAAAATGCATTTACTATTAA-GAT-----------A-AT--TTTTCT--TGGATTTT-ACCGAACAAGTA----------AACT-GTACAAAT-ACA--T--GCATC-CAAATTTCA---------CAC---------CT-------TAA----AAGTTATAT------------A-G--CA-------AG--ATG-ATA------TGCAA---TAC--TT-------AA--TGTT---G-CACTGT--------T-TT-GG----AAAGT--TG-AAA-GTGTTTACTCTATGAC--GACTTATTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTCATATTATGTAAgtaataatttcttccctgattgtgtttaag
gi|4 : ataaTTTCT-----TCTG-T-C----ATTTTGTTA--TTTTTCAGCCAAATCGGAAACTGTAAATTTCGAAATAGAGTGTATAAAATGTTTTCACAACTAA-GATT-A-AAGTAAAATACTTTTTTCT--TGGATTTC-ACCTTTCAAATA----------TTTT-GTATGAAT-ACA--T--GCAGT-CAAATTTGA---------CAC-------------------------AAATTACAC------------C-T--CA-------AA--ATC-ATATATTTTTGCAA---T----TT-------AA----TC---A--ACTTT--------TCTT-GGTTACAAAATAATGCGAA-GTA-CTAAATAAATGCCATAC-CGCTCTGGAATATTGAAAGTGTATTT---------TTGATACTATCTATTTTTAT----ATCTG-CTTTCATATTAGGTAt
gi|5 : A--TTTTTCAGTCAAATTAGAAACTGTAAATTTTGAAACAAAGTGCACAAAATGCTTTTTCTACAAAAGATGGA-AATTAAAA-AC--TTGTCTCATGGATTTC-ACTGAGCAAATA----------ATCT-ATACAAAT-ACA--T--GCAGT-CAAATTTGA---------CACAAATTACATCC-------TCA----AAATCATAT------------T-G--TATATTTTCAA--AT---TA------ACCAACTTTTC--TT-------GG--TGATGAAA-TAATGTGGAGTACTT-TT-GG----GAAGC--TG-AAA-GTGTCTACTTTATGGT--GAC--GTTAT----TCTTGACACTGCATCTG--------TTAAATCAAACAA----Gggtagaaaatccacccttattgtgctttagccga
gi|6 : G-TTGTCATA------TTTACAACC-----ATATACTATATATTCTATTTG-A-GCAAAGTACATGTAT---ATTGTAAC-CTG---AAAAAGTT-GAAAAT--TCACACTTAG-GTCCTGATATCGTTTCT-----TCTG-T-T----ATTTTGTAA--TTTTT-AACAAAATCGGAAACTGAAAAATTTGAAA-------------ATGCATTTACTACTAA-GACG-AGAATTAAAT-ACT-TTTTCC--TTGATCTT-ACC
gi|8 : tatttttgtgaatttgTGTCATACTGTTTTATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCAC--TTAG--TGCTCAAACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTCTT-AATCAAATCGAAAACTGTACAGTTTGAAATAAA---------ATGCTTTCACTCCTAA-GATGCA-AATTCGAT-ACG-TTTTCT--TGGATTTttgca
gi|9 : aCATTA-CTGT--TT------TATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG----AAAAGTT-GAAAAT-AT--CACTTA--GTGCTCA-AACATTTCT-----TCT--T-A----ATTTCG-----TTTCTTAATCAAATC-GAAACTGTACAGTTTGAA---------ATAAAATGCTTTCACTCCTAA-GATGCA-AATTCGAT-ACG-TTTTCT--TGGATTcccttg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTAGCATAGCTTTTTCAAACCTAAAGAATAAAAAGAAAATATACTGCTGTTTTATAATTTATGTATTTGAATACCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTCTAACACTCTGATATCATGGAGTACATACATTTTTTGAATTTACATGTTCAATAGGATGTTCATACCTGAATATTATTCCGTAAATTATTTGTCATCA
Unaligned ( gi|14 ): TTTTTACAAACTCATTGAAGTATAAAAAGAGAATGATTATTCCATTTTATAATTATTGTTTTCAATACTGTTCTTCTACTTGGGCTACGCGACCTCTACAAAAAAGGTGGCGCCTTTTTGTACGCAAGTTCCAACTACGGGTGAATATAGGGAAGTAAA
Unaligned ( gi|18 ): ATCAATTGATGTTTTCAATACTGCTCTTACTAAACAAGGCTACGAACTCGACAAAAAGTGAACATTTTTTGCATACAAAGTTCTAATAATAAAAATTCAGATATTTTTATTGGAATTAACATGTTAAC
Unaligned ( gi|20 ): GTTTTCAATACTGCCCTTACTAAACATGGGGCTTCGGAATCTACAAAAGGTGAGCATTTTTGCCCAATAATCTGATATCAAGGAATGGTTTTAATTAGAATAACCATG
Unaligned ( gi|23 ): ATGCAAATATTATGTACTTTTGACACAAACCCCACACCCAAAATGTTTTTTTTTCAAACTCACCAACTCTTCTTAGTAACAAAATGATGCAAAGTTTT
Unaligned ( gi|26 ): AATATTTAATGCCCCTCAAAGCAGAGACATATGTTACATGTATATATGTCTCTGCTGC
Unaligned ( gi|27 ): GGATTTTTAGTGATTTCTACCTTGAGTTTTAGCAGTAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 1111111 111111 222222 111 11111 111111 111111111 1111 222222222 11 2222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 11111111 1111 222 11111111
lowQualScore : 0 666666 5555555 77 666666 5 5 888888 000 0 888 5 5 777 0 3 1 55555 55 777777 99 4 0 0 666666666 5 4 8888 888888888 777 00 9999999999 6 5 66 66 5 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 66 000000 5 88888888 5 5 0000 66 4 55 0 2 3 666 666 7777 44444444 8888 9999 4 1
lowQualScore : . ...... ....... .. ...... . . ...... ... . ... . . ... . . . ..... .. ...... .. . . . ......... . . .... ......... ... .. .......... . . .. .. . ...................................................................................................................... .. ...... . ........ . . .... .. . .. . . . ... ... .... ........ .... .... . .
lowQualScore : 0 444444 7777777 77 444444 7 7 000000 000 1 888 0 0 888 2 4 4 66666 66 666666 55 1 7 6 444444444 4 4 4444 555555555 222 88 2222222222 7 0 99 99 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 99 888888 6 11111111 0 0 6666 11 4 66 7 4 2 777 333 7777 55555555 5555 4444 4 1
consensus : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GATG-A-AATT-CGATAC--TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCTG-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTATATA------------G--CA-------AA--ATG-ATA------CGCAA--TTAC--TT---------------AA--TGTT---A-TACTG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
Reference ( family-4034 ) : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GATG-A-AATT-CGANAC--TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCTG-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTATATN------------G--CA-------AA--ATG-ATA------TGCAA--TTAC--TT---------------AA--TGTT---A-TACTG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
gi|1 : TCATA------CATACAACCGAATTATATGCAATTT------TTTA-AAGCAAA------ATATTTTACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACAC----------------ATTTCTC----TCTT-T-ATTGTATTTC---A--TTTTGCAACCACA-CTGAAACTGTAAAT---GAAATAGAAGGTATAAAATGCTT-----ATTAA-GATT-G-AAT------AC--TTTTCT--AGGATTT--ACTGAGCAAATACCGAGGAAGTATTTAACACAAATAACACCT--GCAAA-CAGA---GA---------CAC---------AT-------GAATGTTATATTATATATATGTCTCTGCTG--CA-------AATCATGCAT-------TTCAACTTTTC--TTGGTTAAAAATAATAAAA--TGTT---T-TCATG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTTACAGT--GA--TGTTAT----TTTTGTAACTGTATTTA--------TTACAACAAACAA----GATATAGATCTG-TTT
gi|10 : tattggaattaattaacagatgccatattcctgaaatatattttgagactggttgtcagaA-CC--T--GTGAT-TAAACTT-------------C---------CT-------TAACC--AACTT-TCTT------------GTTCA-------AA--AGA-ATA------CA-AA--TTAC--TT---------------AA--TGTT---A-TACGG--------TT-TTTGG----AAAGC--TG-AAA-GTGTTTACTTTAAAGT--GA--TGAAAT----TCTTGAAACT--ATCTA--------TTACACCAAACAA----GAT----AT-TGTCTTCCATATTAttggctagtagaaatgcccactctgattt
gi|11 : gaaccagtaaatactaagttatagtgcAATAT------TTTTTA-GCAAA------GTAT---GTGGGAACTCTGGGAAAAAAGTCCGTAAATTGCCCCATTTAGAGTGGCTATAATATTTCTCTCTTTCTGGT-A----ATTTCGTTATTTTTTTC-ATCAATTTGGA---TGTACATTTTGAAAT-AAGTTTGTAAA
gi|12 : tactactagtaAAATA-TA--T--ACCGT--AAATCTGA---------ATT---------CT-------AAA----AAAATATATAT-----------A--TA-------AC--ATG--TA------GGTGA--TCA----T---------------AC--CATT---A-CAATG--------TT-TT-GG----AAAGC--T-----------------ACAGT--GA--TATTAT----TCTTGAAACTCT--CTA--------TTAAAG-AAATAA----GAA----ATCTG-CTTTCATATTAGGTAAgcgagcaaataacctgttaaaata
gi|13 : -GATG-A-AATT-CAAAAC--TTTCCT----GATTCTGATCAAGCAAATA----------ATTTG-TACAAACA-CA--TTCGCAAT-CAAATTTGATAAACCACCCAC---------CTTTCTTGGTAT----CAAATATACA------------G--CA-------AA--G---------------AA--GTACCTTT---------------AAACTGTT---A-TA-TG---------T-TG-GG----AAAGA--TG-AAA--T-TCTACTTCA-AGC--GAC--GTTAT----TCTTGAgtagaaaattccaccttgattgtgctttagctg
gi|15 : AGCAAATA----------ACCTG-TTAAAATA-CA--T--GCAGTCCACATTTGA---------CA--------------------AA----AAAT
gi|16 : A-------AA--ATG--TA---------AA--GCAC--TT---------------AA--TCCT---AATACTG--------TT-TC-GA----AACGC-----------GTCTACTTAACAGT--GA--TGGTAT----ACTTGAAATTGTGTCCA--------TTAAAGGAAACAA----TAT----TACTG-CTTCCATATTAGGacaacttcaatttatatatttttttcaatgtaaccgacttttctggtagcagatatgccgcaatacttgtgataatgtaaagaaaatacttta
gi|17 : attaaccaacttttcgtggtaacaagATTGGTTGTCATA------TATACAGCC-----ATA
gi|19 : tgtacactaagttcaatgatctgatatagaggacgaaatatttgttggaatcaacatgttaaacagacaccatacctggaatatacatgtacatatgtatttgtgaAAGC--TG-AAAAGTGT--A---AACAGT--GA--TGTTAT----TCTTGAAACAGTATCCATAAATTATTTAAAACAAACAA----GAT---------------ATATTAGGTAcatata
gi|2 : TGTCAAA------GATACATCC-----ATATACAATA-------TTTA-A-GCAAA------GTAT---ACTGTAACTTGG---AAcatctaagtagaaaagtccaccctgattttgttt
gi|21 : atactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtattacacaatattgtagttaggttactgttcatcagatttctaaaaaattcattgcaatattacattttctaccactaaaaataaataagagaataatactctattttatcaattaatgttttcaatactgctcttaataaacatagggcaatggactctaccaaaagagagcatttttgcatacaacgttcacgttaccttatatcgaggagtaaatttttattggaattaacatgtaaacagatgccatatctgaaatacatttgtaaattgggGTCTACTTGACAGT--GA--TGTTTC----TCTTGAAAATGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTTATATTAGGTA
gi|22 : TCCA---AAAAAGTT-AAAAAT-ATCACACTTAA-ATTTTCATACCATTTCT-----TCTG-TCAT---ATTTCGTTA--TTTTTCATCCAAATTGGAAACTGTAAACTTTGAAATggatgaaaattccaccctagttgttttt
gi|24 : AAGTT-AAAAAT-ATCACACTTAG-GTGCTTATACCAATCC------------------------TTA--TTTTTGAACCACATCGGAAACTATTAATTTTGAAATAA--TGT--------CTTT-ACTACTGA-
gi|25 : TTTT----TCTTGAAACTGTATGAA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCTTATTTAGTA
gi|3 : CATTG-TTGTCATA------TATACAACC-----ATATTCAATAT------TT-A-A-GCAAA-----CGTAT---ACCGTGACGCTG---AAAAAGT--AAAAAT-ATCACACTTAG-GTGCTCATGCTATTTCT-----TCTG-T-A----ATTTCGTTAC-TTTTTCAATCAAATTAGTAACTGTACATTTTGAAATAAAGTGTATAAAATGCATTTACTATTAA-GAT----AATT----------TTTCT--TGGATTTT-ACCGAACAAGTA----------AACTG-TACAAATA-CA--T--GCATC-CAAATTTCA---------CAC---------CT-------TAA----AAGTTATATA------------G--CA-------AG--ATG-ATA------TGCAA---TAC--TT---------------AA--TGTT---G-CACTG--------TT-TT-GG----AAAGT--TG-AAA-GTGTTTACTCTATGAC--GACTTATTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTCATATTATGTAAgtaataatttcttccctgattgtgtttaag
gi|4 : ataaTTTCT-----TCTG-T-C----ATTTTGTTA--TTTTTCAGCCAAATCGGAAACTGTAAATTTCGAAATAGAGTGTATAAAATGTTTTCACAACTAA-GATT-A-AAGTAAAATACTTTTTTCT--TGGATTTC-ACCTTTCAAATA----------TTTTG-TATGAATA-CA--T--GCAGT-CAAATTTGA---------CAC-------------------------AAATTACACC------------T--CA-------AA--ATC-ATATATTTTTGCAA--T-----TT---------------AA----TC---A--ACTT--------TTCTT-GGTTACAAAATAATGCGAA-GTA-CTAAATAAATGCCATAC-CGCTCTGGAATATTGAAAGTGTATTT---------TTGATACTATCTATTTTTAT----ATCTG-CTTTCATATTAGGTAt
gi|5 : A--TTTTTCAGTCAAATTAGAAACTGTAAATTTTGAAACAAAGTGCACAAAATGCTTTTTCTACAAAAGATGGA-AATT-AAAAAC--TTGTCTCATGGATTTC-ACTGAGCAAATA----------ATCTA-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CACAAATTACATCC-------TCA----AAATCATATT------------G--TATATTTTCAA--AT---TA------ACCAACTTTTC--TT---------------GG--TGATGAAA-TAATGTGGAGTACTT-TT-GG----GAAGC--TG-AAA-GTGTCTACTTTATGGT--GAC--GTTAT----TCTTGACACTGCATCTG--------TTAAATCAAACAA----Gggtagaaaatccacccttattgtgctttagccga
gi|6 : G-TTGTCATA------TTTACAACC-----ATATACTATATATTCTATTTG-A-GCAAAGTACATGTAT---ATTGTAAC-CTG---AAAAAGTT-GAAAAT--TCACACTTAG-GTCCTGATATCGTTTCT-----TCTG-T-T----ATTTTGTAA--TTTTT-AACAAAATCGGAAACTGAAAAATTTGAAA-------------ATGCATTTACTACTAA-GACG-AGAATT-AAATACT-TTTTCC--TTGATCTT-ACC
gi|8 : tatttttgtgaatttgTGTCATACTGTTTTATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCAC--TTAG--TGCTCAAACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTCTT-AATCAAATCGAAAACTGTACAGTTTGAAATAAA---------ATGCTTTCACTCCTAA-GATGCA-AATT-CGATACG-TTTTCT--TGGATTTttgca
gi|9 : aCATTA-CTGT--TT------TATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG----AAAAGTT-GAAAAT-AT--CACTTA--GTGCTCA-AACATTTCT-----TCT--T-A----ATTTCG-----TTTCTTAATCAAATC-GAAACTGTACAGTTTGAA---------ATAAAATGCTTTCACTCCTAA-GATGCA-AATT-CGATACG-TTTTCT--TGGATTcccttg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTAGCATAGCTTTTTCAAACCTAAAGAATAAAAAGAAAATATACTGCTGTTTTATAATTTATGTATTTGAATACCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTCTAACACTCTGATATCATGGAGTACATACATTTTTTGAATTTACATGTTCAATAGGATGTTCATACCTGAATATTATTCCGTAAATTATTTGTCATCA
Unaligned ( gi|14 ): TTTTTACAAACTCATTGAAGTATAAAAAGAGAATGATTATTCCATTTTATAATTATTGTTTTCAATACTGTTCTTCTACTTGGGCTACGCGACCTCTACAAAAAAGGTGGCGCCTTTTTGTACGCAAGTTCCAACTACGGGTGAATATAGGGAAGTAAA
Unaligned ( gi|18 ): ATCAATTGATGTTTTCAATACTGCTCTTACTAAACAAGGCTACGAACTCGACAAAAAGTGAACATTTTTTGCATACAAAGTTCTAATAATAAAAATTCAGATATTTTTATTGGAATTAACATGTTAAC
Unaligned ( gi|20 ): GTTTTCAATACTGCCCTTACTAAACATGGGGCTTCGGAATCTACAAAAGGTGAGCATTTTTGCCCAATAATCTGATATCAAGGAATGGTTTTAATTAGAATAACCATG
Unaligned ( gi|23 ): ATGCAAATATTATGTACTTTTGACACAAACCCCACACCCAAAATGTTTTTTTTTCAAACTCACCAACTCTTCTTAGTAACAAAATGATGCAAAGTTTT
Unaligned ( gi|26 ): AATATTTAATGCCCCTCAAAGCAGAGACATATGTTACATGTATATATGTCTCTGCTGC
Unaligned ( gi|27 ): GGATTTTTAGTGATTTCTACCTTGAGTTTTAGCAGTAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 1111111 111111 222222 111 11111 111111 111111111 111 222222222 222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111 11111111 1111 222 11111111
lowQualScore : 0 666666 5555555 77 666666 5 5 888888 000 0 888 5 5 777 0 3 1 55555 55 777777 99 4 0 0 666666666 5 4 999 5 444444444 777 777777777777 5 77 77 5 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 66 000000 5 88888888 5 5 0000 66 4 55 0 2 3 666 666 7777 44444444 8888 9999 4 1
lowQualScore : . ...... ....... .. ...... . . ...... ... . ... . . ... . . . ..... .. ...... .. . . . ......... . . ... . ......... ... ............ . .. .. . .................................................................................................................... .. ...... . ........ . . .... .. . .. . . . ... ... .... ........ .... .... . .
lowQualScore : 0 444444 7777777 77 444444 7 7 000000 000 1 888 0 0 888 2 4 4 66666 66 666666 55 1 7 6 444444444 4 4 444 0 555555555 222 777777777777 7 99 99 7 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 99 888888 6 11111111 0 0 6666 11 4 66 7 4 2 777 333 7777 55555555 5555 4444 4 1
consensus : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GAT-G-A-AATT-CGATAC--TTTTCT--TGGATTT----------T-ACCGAGCAAATAATCTGTACAAATA-CA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTAT--ATA----------GCA-------AAATNATA------CG---CAA--TTAC--TT---------------AA--TGTT---A-TACTG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
Reference ( family-4034 ) : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GAT-G-A-AATT-CGATAC--TTTTCT--TGGATTT----------T-ACCGAGCAAATAATCTGTACAAATA-CA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTAT--ATA----------GCA-------AAATGATA------CG---CAA--TTAC--TT---------------AA--TGTT---A-TACTG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
gi|1 : TCATA------CATACAACCGAATTATATGCAATTT------TTTA-AAGCAAA------ATATTTTACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACAC----------------ATTTCTC----TCTT-T-ATTGTATTTC---A--TTTTGCAACCACA-CTGAAACTGTAAAT---GAAATAGAAGGTATAAAATGCTT-----ATTAA-GATTG-A-A-------TAC--TTTTCT--AGGATTTACTGAGCAAAT-ACCGAGGAAGTATTTAACACAAATAACACCT--GCAAA-CAGA---GA---------CAC---------AT-------GAATGTTATATTATATATATGTCTCTGCTGCA-------AA-TCATG------CATTTCAACTTTTC--TTGGTTAAAAATAATAAAA--TGTT---T-TCATG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTTACAGT--GA--TGTTAT----TTTTGTAACTGTATTTA--------TTACAACAAACAA----GATATAGATCTG-TTT
gi|10 : tattggaattaattaacagatgccatattcctgaaatatattttgagactggttgtcagaCA-------AAAGAATA------CA----AA--TTAC--TT---------------AA--TGTT---A-TACGG--------TT-TTTGG----AAAGC--TG-AAA-GTGTTTACTTTAAAGT--GA--TGAAAT----TCTTGAAAC--TATCTA--------TTACACCAAACAA----GAT----AT-TGTCTTCCATATTAttggctagtagaaatgcccactctgattt
gi|11 : gaaccagtaaatactaagttatagtgcacctgtgattaaacttccttaaccaactttcttgttAATAT------TTTTTA-GCAAA------GTAT---GTGGGAACTCTGGGAAAAAAGTCCGTAAATTGCCCCATTTAGAGTGGCTATAATATTTCTCTCTTTCTGGT-A----ATTTCGTTATTTTTTTC-ATCAATTTGGA---TGTACATTTTGAAAT-AAGTTTGTAAA
gi|12 : tactactagtaAAATA-TA--T--ACCGT--AAATCTGA---------ATT---------CT-------AAA----AAAATAT--ATAT---------ATA-------ACATG-TA------GG---TGA--TCA----T---------------AC--CATT---A-CAATG--------TT-TT-GG----AAAGC--T-----------------ACAGT--GA--TATTAT----TCTTGAAACTCT--CTA--------TTAAAG-AAATAA----GAA----ATCTG-CTTTCATATTAGGTAAgcgagcaaataacctgttaaaata
gi|13 : -GAT-G-A-AATT-CAAAAC--TTTCCT----GATTC----------TGATCAAGCAAATAATTTGTACAAACA-CA--TTCGCAAT-CAAATTTGATAAACCACCCAC---------CTTTCTTGGTAT----CAAATAT--ACA----------GCA-------AAG-----------------AA--GTACCTTT---------------AAACTGTT---A-TA-TG---------T-TG-GG----AAAGA--TG-AAA--T-TCTACTTCA-AGC--GAC--GTTAT----TCTTGAgtagaaaattccaccttgattgtgctttagctg
gi|15 : AGCAAATAACCTGTTAAAATA-CA--T--GCAGTCCACATTTGA---------CA--------------------AA----AAAT
gi|16 : A-------AAATG-TA------------AA--GCAC--TT---------------AA--TCCT---AATACTG--------TT-TC-GA----AACGC-----------GTCTACTTAACAGT--GA--TGGTAT----ACTTGAAATTGTGTCCA--------TTAAAGGAAACAA----TAT----TACTG-CTTCCATATTAGGacaacttcaatttatatatttttttcaatgtaaccgacttttctggtagcagatatgccgcaatacttgtgataatgtaaagaaaatacttta
gi|17 : attaaccaacttttcgtggtaacaagATTGGTTGTCATA------TATACAGCC-----ATA
gi|19 : tgtacactaagttcaatgatctgatatagaggacgaaatatttgttggaatcaacatgttaaacagacaccatacctggaatatacatgtacatatgtatttgtgaAAGC--TG-AAAAGTGT--A---AACAGT--GA--TGTTAT----TCTTGAAACAGTATCCATAAATTATTTAAAACAAACAA----GAT---------------ATATTAGGTAcatata
gi|2 : TGTCAAA------GATACATCC-----ATATACAATA-------TTTA-A-GCAAA------GTAT---ACTGTAACTTGG---AAcatctaagtagaaaagtccaccctgattttgttt
gi|21 : atactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtattacacaatattgtagttaggttactgttcatcagatttctaaaaaattcattgcaatattacattttctaccactaaaaataaataagagaataatactctattttatcaattaatgttttcaatactgctcttaataaacatagggcaatggactctaccaaaagagagcatttttgcatacaacgttcacgttaccttatatcgaggagtaaatttttattggaattaacatgtaaacagatgccatatctgaaatacatttgtaaattgggGTCTACTTGACAGT--GA--TGTTTC----TCTTGAAAATGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTTATATTAGGTA
gi|22 : TCCA---AAAAAGTT-AAAAAT-ATCACACTTAA-ATTTTCATACCATTTCT-----TCTG-TCAT---ATTTCGTTA--TTTTTCATCCAAATTGGAAACTGTAAACTTTGAAATggatgaaaattccaccctagttgttttt
gi|24 : AAGTT-AAAAAT-ATCACACTTAG-GTGCTTATACCAATCC------------------------TTA--TTTTTGAACCACATCGGAAACTATTAATTTTGAAATAA--TGT--------CTTT-ACTACTGA-
gi|25 : TTTT----TCTTGAAACTGTATGAA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCTTATTTAGTA
gi|3 : CATTG-TTGTCATA------TATACAACC-----ATATTCAATAT------TT-A-A-GCAAA-----CGTAT---ACCGTGACGCTG---AAAAAGT--AAAAAT-ATCACACTTAG-GTGCTCATGCTATTTCT-----TCTG-T-A----ATTTCGTTAC-TTTTTCAATCAAATTAGTAACTGTACATTTTGAAATAAAGTGTATAAAATGCATTTACTATTAA-GAT-----AATT----------TTTCT--TGGATTT----------T-ACCGAACAAGTAAACTGTACAAATA-CA--T--GCATC-CAAATTTCA---------CAC---------CT-------TAA----AAGTTAT--ATA----------GCA-------AGATGATA------TG---CAA---TAC--TT---------------AA--TGTT---G-CACTG--------TT-TT-GG----AAAGT--TG-AAA-GTGTTTACTCTATGAC--GACTTATTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTCATATTATGTAAgtaataatttcttccctgattgtgtttaag
gi|4 : ataaTTTCT-----TCTG-T-C----ATTTTGTTA--TTTTTCAGCCAAATCGGAAACTGTAAATTTCGAAATAGAGTGTATAAAATGTTTTCACAACTAA-GAT-T-A-AAGTAAAATACTTTTTTCT--TGGATTT----------C-ACCTTTCAAATATTTTGTATGAATA-CA--T--GCAGT-CAAATTTGA---------CAC-------------------------AAATTAC--ACC----------TCA-------AAATCATATATTTTTG---CAA--T-----TT---------------AA----TC---A--ACTT--------TTCTT-GGTTACAAAATAATGCGAA-GTA-CTAAATAAATGCCATAC-CGCTCTGGAATATTGAAAGTGTATTT---------TTGATACTATCTATTTTTAT----ATCTG-CTTTCATATTAGGTAt
gi|5 : A--TTTTTCAGTCAAATTAGAAACTGTAAATTTTGAAACAAAGTGCACAAAATGCTTTTTCTACAAAAGAT-GGA-AATT-AAAAAC--TTGTCTCATGGATTT----------C-ACTGAGCAAATAATCTATACAAATA-CA--T--GCAGT-CAAATTTGA---------CACAAATTACATCC-------TCA----AAATCAT--ATT----------GTATATTTTCAAATTA-A------C----CAACTTTTC--TT---------------GG--TGATGAAA-TAATGTGGAGTACTT-TT-GG----GAAGC--TG-AAA-GTGTCTACTTTATGGT--GAC--GTTAT----TCTTGACACTGCATCTG--------TTAAATCAAACAA----Gggtagaaaatccacccttattgtgctttagccga
gi|6 : G-TTGTCATA------TTTACAACC-----ATATACTATATATTCTATTTG-A-GCAAAGTACATGTAT---ATTGTAAC-CTG---AAAAAGTT-GAAAAT--TCACACTTAG-GTCCTGATATCGTTTCT-----TCTG-T-T----ATTTTGTAA--TTTTT-AACAAAATCGGAAACTGAAAAATTTGAAA-------------ATGCATTTACTACTAA-GAC-G-AGAATT-AAATACT-TTTTCC--TTGATCT----------T-ACC
gi|8 : tatttttgtgaatttgTGTCATACTGTTTTATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCAC--TTAG--TGCTCAAACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTCTT-AATCAAATCGAAAACTGTACAGTTTGAAATAAA---------ATGCTTTCACTCCTAA-GAT-GCA-AATT-CGATACG-TTTTCT--TGGATTT----------ttgca
gi|9 : aCATTA-CTGT--TT------TATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG----AAAAGTT-GAAAAT-AT--CACTTA--GTGCTCA-AACATTTCT-----TCT--T-A----ATTTCG-----TTTCTTAATCAAATC-GAAACTGTACAGTTTGAA---------ATAAAATGCTTTCACTCCTAA-GAT-GCA-AATT-CGATACG-TTTTCT--TGGATTcccttg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTAGCATAGCTTTTTCAAACCTAAAGAATAAAAAGAAAATATACTGCTGTTTTATAATTTATGTATTTGAATACCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTCTAACACTCTGATATCATGGAGTACATACATTTTTTGAATTTACATGTTCAATAGGATGTTCATACCTGAATATTATTCCGTAAATTATTTGTCATCA
Unaligned ( gi|14 ): TTTTTACAAACTCATTGAAGTATAAAAAGAGAATGATTATTCCATTTTATAATTATTGTTTTCAATACTGTTCTTCTACTTGGGCTACGCGACCTCTACAAAAAAGGTGGCGCCTTTTTGTACGCAAGTTCCAACTACGGGTGAATATAGGGAAGTAAA
Unaligned ( gi|18 ): ATCAATTGATGTTTTCAATACTGCTCTTACTAAACAAGGCTACGAACTCGACAAAAAGTGAACATTTTTTGCATACAAAGTTCTAATAATAAAAATTCAGATATTTTTATTGGAATTAACATGTTAAC
Unaligned ( gi|20 ): GTTTTCAATACTGCCCTTACTAAACATGGGGCTTCGGAATCTACAAAAGGTGAGCATTTTTGCCCAATAATCTGATATCAAGGAATGGTTTTAATTAGAATAACCATG
Unaligned ( gi|23 ): ATGCAAATATTATGTACTTTTGACACAAACCCCACACCCAAAATGTTTTTTTTTCAAACTCACCAACTCTTCTTAGTAACAAAATGATGCAAAGTTTT
Unaligned ( gi|26 ): AATATTTAATGCCCCTCAAAGCAGAGACATATGTTACATGTATATATGTCTCTGCTGC
Unaligned ( gi|27 ): GGATTTTTAGTGATTTCTACCTTGAGTTTTAGCAGTAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 1111111 111111 222222 111 11111 111111 111111111 111 222222222 11 2222222222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 11111111 1111 222 11111111
lowQualScore : 0 666666 5555555 77 666666 5 5 888888 000 0 888 5 5 777 0 3 1 55555 55 777777 99 4 0 0 666666666 5 4 999 5 444444444 777 00 9999999999 6 5 77 77 5 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 66 000000 5 88888888 5 5 0000 66 4 55 0 2 3 666 666 7777 44444444 8888 9999 4 1
lowQualScore : . ...... ....... .. ...... . . ...... ... . ... . . ... . . . ..... .. ...... .. . . . ......... . . ... . ......... ... .. .......... . . .. .. . .................................................................................................................... .. ...... . ........ . . .... .. . .. . . . ... ... .... ........ .... .... . .
lowQualScore : 0 444444 7777777 77 444444 7 7 000000 000 1 888 0 0 888 2 4 4 66666 66 666666 55 1 7 6 444444444 4 4 444 0 555555555 222 88 2222222222 7 7 99 99 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 99 888888 6 11111111 0 0 6666 11 4 66 7 4 2 777 333 7777 55555555 5555 4444 4 1
consensus : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GAT-G-A-AATT-CGATAC--TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCTG-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTATATA------------GCA-------AAATNATA------CG---CAA--TTAC--TT---------------AA--TGTT---A-TACTG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
Reference ( family-4034 ) : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GAT-G-A-AATT-CGATAC--TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCTG-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTATATA------------GCA-------AAATNATA------CG---CAA--TTAC--TT---------------AA--TGTT---A-TACTG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
gi|1 : TCATA------CATACAACCGAATTATATGCAATTT------TTTA-AAGCAAA------ATATTTTACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACAC----------------ATTTCTC----TCTT-T-ATTGTATTTC---A--TTTTGCAACCACA-CTGAAACTGTAAAT---GAAATAGAAGGTATAAAATGCTT-----ATTAA-GATTG-A-A-------TAC--TTTTCT--AGGATTT--ACTGAGCAAATACCGAGGAAGTATTTAACACAAATAACACCT--GCAAA-CAGA---GA---------CAC---------AT-------GAATGTTATATTATATATATGTCTCTGCTGCA-------AA-TCATG------CATTTCAACTTTTC--TTGGTTAAAAATAATAAAA--TGTT---T-TCATG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTTACAGT--GA--TGTTAT----TTTTGTAACTGTATTTA--------TTACAACAAACAA----GATATAGATCTG-TTT
gi|10 : tattggaattaattaacagatgccatattcctgaaatatattttgagactggttgtcagaCA-------AAAGAATA------CA----AA--TTAC--TT---------------AA--TGTT---A-TACGG--------TT-TTTGG----AAAGC--TG-AAA-GTGTTTACTTTAAAGT--GA--TGAAAT----TCTTGAAACT--ATCTA--------TTACACCAAACAA----GAT----AT-TGTCTTCCATATTAttggctagtagaaatgcccactctgattt
gi|11 : gaaccagtaaatactaagttatagtgcacctgtgattaaacttccttaaccaactttcttgttAATAT------TTTTTA-GCAAA------GTAT---GTGGGAACTCTGGGAAAAAAGTCCGTAAATTGCCCCATTTAGAGTGGCTATAATATTTCTCTCTTTCTGGT-A----ATTTCGTTATTTTTTTC-ATCAATTTGGA---TGTACATTTTGAAAT-AAGTTTGTAAA
gi|12 : tactactagtaAAATA-TA--T--ACCGT--AAATCTGA---------ATT---------CT-------AAA----AAAATATATAT-----------ATA-------ACATG-TA------GG---TGA--TCA----T---------------AC--CATT---A-CAATG--------TT-TT-GG----AAAGC--T-----------------ACAGT--GA--TATTAT----TCTTGAAACTCT--CTA--------TTAAAG-AAATAA----GAA----ATCTG-CTTTCATATTAGGTAAgcgagcaaataacctgttaaaata
gi|13 : -GAT-G-A-AATT-CAAAAC--TTTCCT----GATTCTGATCAAGCAAATA----------ATTTG-TACAAACA-CA--TTCGCAAT-CAAATTTGATAAACCACCCAC---------CTTTCTTGGTAT----CAAATATACA------------GCA-------AAG-----------------AA--GTACCTTT---------------AAACTGTT---A-TA-TG---------T-TG-GG----AAAGA--TG-AAA--T-TCTACTTCA-AGC--GAC--GTTAT----TCTTGAgtagaaaattccaccttgattgtgctttagctg
gi|15 : AGCAAATA----------ACCTG-TTAAAATA-CA--T--GCAGTCCACATTTGA---------CA--------------------AA----AAAT
gi|16 : AC--TT---------------AA--TCCT---AATACTG--------TT-TC-GA----AACGC-----------GTCTACTTAACAGT--GA--TGGTAT----ACTTGAAATTGTGTCCA--------TTAAAGGAAACAA----TAT----TACTG-CTTCCATATTAGGacaacttcaatttatatatttttttcaatgtaaccgacttttctggtagcagatatgccgcaatacttgtgataatgtaaagaaaatacttta
gi|17 : attaaccaacttttcgtggtaacaagaaaatgtaaagcATTGGTTGTCATA------TATACAGCC-----ATA
gi|19 : tgtacactaagttcaatgatctgatatagaggacgaaatatttgttggaatcaacatgttaaacagacaccatacctggaatatacatgtacatatgtatttgtgaAAGC--TG-AAAAGTGT--A---AACAGT--GA--TGTTAT----TCTTGAAACAGTATCCATAAATTATTTAAAACAAACAA----GAT---------------ATATTAGGTAcatata
gi|2 : TGTCAAA------GATACATCC-----ATATACAATA-------TTTA-A-GCAAA------GTAT---ACTGTAACTTGG---AAcatctaagtagaaaagtccaccctgattttgttt
gi|21 : atactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtattacacaatattgtagttaggttactgttcatcagatttctaaaaaattcattgcaatattacattttctaccactaaaaataaataagagaataatactctattttatcaattaatgttttcaatactgctcttaataaacatagggcaatggactctaccaaaagagagcatttttgcatacaacgttcacgttaccttatatcgaggagtaaatttttattggaattaacatgtaaacagatgccatatctgaaatacatttgtaaattgggGTCTACTTGACAGT--GA--TGTTTC----TCTTGAAAATGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTTATATTAGGTA
gi|22 : TCCA---AAAAAGTT-AAAAAT-ATCACACTTAA-ATTTTCATACCATTTCT-----TCTG-TCAT---ATTTCGTTA--TTTTTCATCCAAATTGGAAACTGTAAACTTTGAAATggatgaaaattccaccctagttgttttt
gi|24 : AAGTT-AAAAAT-ATCACACTTAG-GTGCTTATACCAATCC------------------------TTA--TTTTTGAACCACATCGGAAACTATTAATTTTGAAATAA--TGT--------CTTT-ACTACTGA-
gi|25 : TTTT----TCTTGAAACTGTATGAA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCTTATTTAGTA
gi|3 : CATTG-TTGTCATA------TATACAACC-----ATATTCAATAT------TT-A-A-GCAAA-----CGTAT---ACCGTGACGCTG---AAAAAGT--AAAAAT-ATCACACTTAG-GTGCTCATGCTATTTCT-----TCTG-T-A----ATTTCGTTAC-TTTTTCAATCAAATTAGTAACTGTACATTTTGAAATAAAGTGTATAAAATGCATTTACTATTAA-GAT-----AATT----------TTTCT--TGGATTTT-ACCGAACAAGTA----------AACTG-TACAAATA-CA--T--GCATC-CAAATTTCA---------CAC---------CT-------TAA----AAGTTATATA------------GCA-------AGATGATA------TG---CAA---TAC--TT---------------AA--TGTT---G-CACTG--------TT-TT-GG----AAAGT--TG-AAA-GTGTTTACTCTATGAC--GACTTATTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTCATATTATGTAAgtaataatttcttccctgattgtgtttaag
gi|4 : ataaTTTCT-----TCTG-T-C----ATTTTGTTA--TTTTTCAGCCAAATCGGAAACTGTAAATTTCGAAATAGAGTGTATAAAATGTTTTCACAACTAA-GAT-T-A-AAGTAAAATACTTTTTTCT--TGGATTTC-ACCTTTCAAATA----------TTTTG-TATGAATA-CA--T--GCAGT-CAAATTTGA---------CAC-------------------------AAATTACACC------------TCA-------AAATCATATATTTTTG---CAA--T-----TT---------------AA----TC---A--ACTT--------TTCTT-GGTTACAAAATAATGCGAA-GTA-CTAAATAAATGCCATAC-CGCTCTGGAATATTGAAAGTGTATTT---------TTGATACTATCTATTTTTAT----ATCTG-CTTTCATATTAGGTAt
gi|5 : A--TTTTTCAGTCAAATTAGAAACTGTAAATTTTGAAACAAAGTGCACAAAATGCTTTTTCTACAAAAGAT-GGA-AATT-AAAAAC--TTGTCTCATGGATTTC-ACTGAGCAAATA----------ATCTA-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CACAAATTACATCC-------TCA----AAATCATATT------------GTATATTTTCAAATTA-A------C----CAACTTTTC--TT---------------GG--TGATGAAA-TAATGTGGAGTACTT-TT-GG----GAAGC--TG-AAA-GTGTCTACTTTATGGT--GAC--GTTAT----TCTTGACACTGCATCTG--------TTAAATCAAACAA----Gggtagaaaatccacccttattgtgctttagccga
gi|6 : G-TTGTCATA------TTTACAACC-----ATATACTATATATTCTATTTG-A-GCAAAGTACATGTAT---ATTGTAAC-CTG---AAAAAGTT-GAAAAT--TCACACTTAG-GTCCTGATATCGTTTCT-----TCTG-T-T----ATTTTGTAA--TTTTT-AACAAAATCGGAAACTGAAAAATTTGAAA-------------ATGCATTTACTACTAA-GAC-G-AGAATT-AAATACT-TTTTCC--TTGATCTT-ACC
gi|8 : tatttttgtgaatttgTGTCATACTGTTTTATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCAC--TTAG--TGCTCAAACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTCTT-AATCAAATCGAAAACTGTACAGTTTGAAATAAA---------ATGCTTTCACTCCTAA-GAT-GCA-AATT-CGATACG-TTTTCT--TGGATTTttgca
gi|9 : aCATTA-CTGT--TT------TATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG----AAAAGTT-GAAAAT-AT--CACTTA--GTGCTCA-AACATTTCT-----TCT--T-A----ATTTCG-----TTTCTTAATCAAATC-GAAACTGTACAGTTTGAA---------ATAAAATGCTTTCACTCCTAA-GAT-GCA-AATT-CGATACG-TTTTCT--TGGATTcccttg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTAGCATAGCTTTTTCAAACCTAAAGAATAAAAAGAAAATATACTGCTGTTTTATAATTTATGTATTTGAATACCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTCTAACACTCTGATATCATGGAGTACATACATTTTTTGAATTTACATGTTCAATAGGATGTTCATACCTGAATATTATTCCGTAAATTATTTGTCATCA
Unaligned ( gi|14 ): TTTTTACAAACTCATTGAAGTATAAAAAGAGAATGATTATTCCATTTTATAATTATTGTTTTCAATACTGTTCTTCTACTTGGGCTACGCGACCTCTACAAAAAAGGTGGCGCCTTTTTGTACGCAAGTTCCAACTACGGGTGAATATAGGGAAGTAAA
Unaligned ( gi|18 ): ATCAATTGATGTTTTCAATACTGCTCTTACTAAACAAGGCTACGAACTCGACAAAAAGTGAACATTTTTTGCATACAAAGTTCTAATAATAAAAATTCAGATATTTTTATTGGAATTAACATGTTAAC
Unaligned ( gi|20 ): GTTTTCAATACTGCCCTTACTAAACATGGGGCTTCGGAATCTACAAAAGGTGAGCATTTTTGCCCAATAATCTGATATCAAGGAATGGTTTTAATTAGAATAACCATG
Unaligned ( gi|23 ): ATGCAAATATTATGTACTTTTGACACAAACCCCACACCCAAAATGTTTTTTTTTCAAACTCACCAACTCTTCTTAGTAACAAAATGATGCAAAGTTTT
Unaligned ( gi|26 ): AATATTTAATGCCCCTCAAAGCAGAGACATATGTTACATGTATATATGTCTCTGCTGC
Unaligned ( gi|27 ): GGATTTTTAGTGATTTCTACCTTGAGTTTTAGCAGTAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 1111111 111111 222222 111 11111 111111 111111111 111 222222222 11 2222222222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 11111111 1111 222 11111111
lowQualScore : 0 666666 5555555 77 666666 5 5 888888 000 0 888 5 5 777 0 3 1 55555 55 777777 99 4 0 0 666666666 5 4 999 5 444444444 777 00 9999999999 6 5 77 77 5 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 66 000000 5 88888888 5 5 0000 66 4 55 0 2 3 666 666 7777 44444444 8888 9999 4 1
lowQualScore : . ...... ....... .. ...... . . ...... ... . ... . . ... . . . ..... .. ...... .. . . . ......... . . ... . ......... ... .. .......... . . .. .. . .................................................................................................................... .. ...... . ........ . . .... .. . .. . . . ... ... .... ........ .... .... . .
lowQualScore : 0 444444 7777777 77 444444 7 7 000000 000 1 888 0 0 888 2 4 4 66666 66 666666 55 1 7 6 444444444 4 4 444 0 555555555 222 88 2222222222 7 7 99 99 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 99 888888 6 11111111 0 0 6666 11 4 66 7 4 2 777 333 7777 55555555 5555 4444 4 1
consensus : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GAT-G-A-AATT-CGATAC--TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCTG-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTATATA------------GCA-------AAATNATA------CG---CAA--TTAC--TT---------------AA--TGTT---A-TACTG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
Reference ( family-4034 ) : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GAT-G-A-AATT-CGATAC--TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCTG-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTATATA------------GCA-------AAATNATA------CG---CAA--TTAC--TT---------------AA--TGTT---A-TACTG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
gi|1 : TCATA------CATACAACCGAATTATATGCAATTT------TTTA-AAGCAAA------ATATTTTACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACAC----------------ATTTCTC----TCTT-T-ATTGTATTTC---A--TTTTGCAACCACA-CTGAAACTGTAAAT---GAAATAGAAGGTATAAAATGCTT-----ATTAA-GATTG-A-A-------TAC--TTTTCT--AGGATTT--ACTGAGCAAATACCGAGGAAGTATTTAACACAAATAACACCT--GCAAA-CAGA---GA---------CAC---------AT-------GAATGTTATATTATATATATGTCTCTGCTGCA-------AA-TCATG------CATTTCAACTTTTC--TTGGTTAAAAATAATAAAA--TGTT---T-TCATG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTTACAGT--GA--TGTTAT----TTTTGTAACTGTATTTA--------TTACAACAAACAA----GATATAGATCTG-TTT
gi|10 : tattggaattaattaacagatgccatattcctgaaatatattttgagactggttgtcagaCA-------AAAGAATA------CA----AA--TTAC--TT---------------AA--TGTT---A-TACGG--------TT-TTTGG----AAAGC--TG-AAA-GTGTTTACTTTAAAGT--GA--TGAAAT----TCTTGAAACT--ATCTA--------TTACACCAAACAA----GAT----AT-TGTCTTCCATATTAttggctagtagaaatgcccactctgattt
gi|11 : gaaccagtaaatactaagttatagtgcacctgtgattaaacttccttaaccaactttcttgttAATAT------TTTTTA-GCAAA------GTAT---GTGGGAACTCTGGGAAAAAAGTCCGTAAATTGCCCCATTTAGAGTGGCTATAATATTTCTCTCTTTCTGGT-A----ATTTCGTTATTTTTTTC-ATCAATTTGGA---TGTACATTTTGAAAT-AAGTTTGTAAA
gi|12 : tactactagtaAAATA-TA--T--ACCGT--AAATCTGA---------ATT---------CT-------AAA----AAAATATATAT-----------ATA-------ACATG-TA------GG---TGA--TCA----T---------------AC--CATT---A-CAATG--------TT-TT-GG----AAAGC--T-----------------ACAGT--GA--TATTAT----TCTTGAAACTCT--CTA--------TTAAAG-AAATAA----GAA----ATCTG-CTTTCATATTAGGTAAgcgagcaaataacctgttaaaata
gi|13 : -GAT-G-A-AATT-CAAAAC--TTTCCT----GATTCTGATCAAGCAAATA----------ATTTG-TACAAACA-CA--TTCGCAAT-CAAATTTGATAAACCACCCAC---------CTTTCTTGGTAT----CAAATATACA------------GCA-------AAG-----------------AA--GTACCTTT---------------AAACTGTT---A-TA-TG---------T-TG-GG----AAAGA--TG-AAA--T-TCTACTTCA-AGC--GAC--GTTAT----TCTTGAgtagaaaattccaccttgattgtgctttagctg
gi|15 : AGCAAATA----------ACCTG-TTAAAATA-CA--T--GCAGTCCACATTTGA---------CA--------------------AA----AAAT
gi|16 : AC--TT---------------AA--TCCT---AATACTG--------TT-TC-GA----AACGC-----------GTCTACTTAACAGT--GA--TGGTAT----ACTTGAAATTGTGTCCA--------TTAAAGGAAACAA----TAT----TACTG-CTTCCATATTAGGacaacttcaatttatatatttttttcaatgtaaccgacttttctggtagcagatatgccgcaatacttgtgataatgtaaagaaaatacttta
gi|17 : attaaccaacttttcgtggtaacaagaaaatgtaaagcATTGGTTGTCATA------TATACAGCC-----ATA
gi|19 : tgtacactaagttcaatgatctgatatagaggacgaaatatttgttggaatcaacatgttaaacagacaccatacctggaatatacatgtacatatgtatttgtgaAAGC--TG-AAAAGTGT--A---AACAGT--GA--TGTTAT----TCTTGAAACAGTATCCATAAATTATTTAAAACAAACAA----GAT---------------ATATTAGGTAcatata
gi|2 : TGTCAAA------GATACATCC-----ATATACAATA-------TTTA-A-GCAAA------GTAT---ACTGTAACTTGG---AAcatctaagtagaaaagtccaccctgattttgttt
gi|21 : atactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtattacacaatattgtagttaggttactgttcatcagatttctaaaaaattcattgcaatattacattttctaccactaaaaataaataagagaataatactctattttatcaattaatgttttcaatactgctcttaataaacatagggcaatggactctaccaaaagagagcatttttgcatacaacgttcacgttaccttatatcgaggagtaaatttttattggaattaacatgtaaacagatgccatatctgaaatacatttgtaaattgggGTCTACTTGACAGT--GA--TGTTTC----TCTTGAAAATGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTTATATTAGGTA
gi|22 : TCCA---AAAAAGTT-AAAAAT-ATCACACTTAA-ATTTTCATACCATTTCT-----TCTG-TCAT---ATTTCGTTA--TTTTTCATCCAAATTGGAAACTGTAAACTTTGAAATggatgaaaattccaccctagttgttttt
gi|24 : AAGTT-AAAAAT-ATCACACTTAG-GTGCTTATACCAATCC------------------------TTA--TTTTTGAACCACATCGGAAACTATTAATTTTGAAATAA--TGT--------CTTT-ACTACTGA-
gi|25 : TTTT----TCTTGAAACTGTATGAA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCTTATTTAGTA
gi|3 : CATTG-TTGTCATA------TATACAACC-----ATATTCAATAT------TT-A-A-GCAAA-----CGTAT---ACCGTGACGCTG---AAAAAGT--AAAAAT-ATCACACTTAG-GTGCTCATGCTATTTCT-----TCTG-T-A----ATTTCGTTAC-TTTTTCAATCAAATTAGTAACTGTACATTTTGAAATAAAGTGTATAAAATGCATTTACTATTAA-GAT-----AATT----------TTTCT--TGGATTTT-ACCGAACAAGTA----------AACTG-TACAAATA-CA--T--GCATC-CAAATTTCA---------CAC---------CT-------TAA----AAGTTATATA------------GCA-------AGATGATA------TG---CAA---TAC--TT---------------AA--TGTT---G-CACTG--------TT-TT-GG----AAAGT--TG-AAA-GTGTTTACTCTATGAC--GACTTATTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTCATATTATGTAAgtaataatttcttccctgattgtgtttaag
gi|4 : ataaTTTCT-----TCTG-T-C----ATTTTGTTA--TTTTTCAGCCAAATCGGAAACTGTAAATTTCGAAATAGAGTGTATAAAATGTTTTCACAACTAA-GAT-T-A-AAGTAAAATACTTTTTTCT--TGGATTTC-ACCTTTCAAATA----------TTTTG-TATGAATA-CA--T--GCAGT-CAAATTTGA---------CAC-------------------------AAATTACACC------------TCA-------AAATCATATATTTTTG---CAA--T-----TT---------------AA----TC---A--ACTT--------TTCTT-GGTTACAAAATAATGCGAA-GTA-CTAAATAAATGCCATAC-CGCTCTGGAATATTGAAAGTGTATTT---------TTGATACTATCTATTTTTAT----ATCTG-CTTTCATATTAGGTAt
gi|5 : A--TTTTTCAGTCAAATTAGAAACTGTAAATTTTGAAACAAAGTGCACAAAATGCTTTTTCTACAAAAGAT-GGA-AATT-AAAAAC--TTGTCTCATGGATTTC-ACTGAGCAAATA----------ATCTA-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CACAAATTACATCC-------TCA----AAATCATATT------------GTATATTTTCAAATTA-A------C----CAACTTTTC--TT---------------GG--TGATGAAA-TAATGTGGAGTACTT-TT-GG----GAAGC--TG-AAA-GTGTCTACTTTATGGT--GAC--GTTAT----TCTTGACACTGCATCTG--------TTAAATCAAACAA----Gggtagaaaatccacccttattgtgctttagccga
gi|6 : G-TTGTCATA------TTTACAACC-----ATATACTATATATTCTATTTG-A-GCAAAGTACATGTAT---ATTGTAAC-CTG---AAAAAGTT-GAAAAT--TCACACTTAG-GTCCTGATATCGTTTCT-----TCTG-T-T----ATTTTGTAA--TTTTT-AACAAAATCGGAAACTGAAAAATTTGAAA-------------ATGCATTTACTACTAA-GAC-G-AGAATT-AAATACT-TTTTCC--TTGATCTT-ACC
gi|8 : tatttttgtgaatttgTGTCATACTGTTTTATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCAC--TTAG--TGCTCAAACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTCTT-AATCAAATCGAAAACTGTACAGTTTGAAATAAA---------ATGCTTTCACTCCTAA-GAT-GCA-AATT-CGATACG-TTTTCT--TGGATTTttgca
gi|9 : aCATTA-CTGT--TT------TATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG----AAAAGTT-GAAAAT-AT--CACTTA--GTGCTCA-AACATTTCT-----TCT--T-A----ATTTCG-----TTTCTTAATCAAATC-GAAACTGTACAGTTTGAA---------ATAAAATGCTTTCACTCCTAA-GAT-GCA-AATT-CGATACG-TTTTCT--TGGATTcccttg
blockSeqs : . CTGTTT CC AC ATTCTA T . GTACAT . GGA C T GAG T A CTCTT GG CAT TT C AAAGTGTAT T A GG G AAAATACTT CAT TG . . . . TC C CACAAATTACATCCTCAAAATCATATTGTATATTTTCAAATTAACCAACTTTTCTT AC GAAAT C TGGAGTAC C T TTAC AA C AG T A CCA CTT GGAA TAAATTAT TTTT . T T
blockSeqs : . . CC TC . . . C . . . . AA T C . G A C C AGAGTGTAT C . GC . AAATACT T T . . . . . . TAAACCACCCACCTTTCTTGGTATCAAATATACAGCAAAGAAGTACCTTT . AAT A . . . . . . G C C T CC . . . . . C
blockSeqs : . . CC AC . . . C . . . . GG T C . G A . G AAAGTGCAC T . GC . CGATACG T C . . . . . . CACCTTAAAAGTTATATAGCAAGATGATATGCAATACTT . AT C . . . . . . G A C T T . . . . . T
blockSeqs : . CC T . . . C . . . . GG T C . G C . C AAGTTTGT T . G . CGATACG T C . . . . . . ATTCTAAAAAAATATATATATAACATGTAGGTGATCAT . AC C . . . . . . G A C C T . . . . . C
blockSeqs : . . T . . . . . . . . GG T T . G T . C AATGT C . T . CAAAAC T T . . . . . . CACAAATTACACCTCAAAATCATATATTTTTGCAATTT . AT C . . . . . . G G C T C . . . . . T
blockSeqs : . . . . . . . . . . G A C . G A . C AAA C . G . AAAAAC T . . . . . GC A . . . . . . . T T T T . . . . . T
blockSeqs : . . . G . A . . A . T AT . . . . . . . A . . . . . . . . A A T T . . . . . .
blockSeqs : . . . . . . . . . . T T C T . . . . .
blockSeqs : . . . . T C . . .
blockSeqs : .
blockSeqCons : CC***** C***** *** GG* ***** A***** G** CGATAC*** C* ********** ** ****
originalCons : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GAT-G-A-AATT-CGATAC--TTTTCT--TGGATTTT-ACCGAGCAAATA----------ATCTG-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTATATA------------GCA-------AAATNATA------CG---CAA--TTAC--TT---------------AA--TGTT---A-TACTG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
finalCons : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAAC-----GTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAGG-TGCTCATACCATTTCT-----TCTG-TA-----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GATG--A-AATTCGATAC---TTTTCT--TGGATTTC-ACCGAGCAAATA----------ATCTG-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTATATA------------GCA-------AAATNATA------CG---CAA--TTAC--TT---------------AA--TGTT---A-TACTG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTAGCATAGCTTTTTCAAACCTAAAGAATAAAAAGAAAATATACTGCTGTTTTATAATTTATGTATTTGAATACCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTCTAACACTCTGATATCATGGAGTACATACATTTTTTGAATTTACATGTTCAATAGGATGTTCATACCTGAATATTATTCCGTAAATTATTTGTCATCA
Unaligned ( gi|14 ): TTTTTACAAACTCATTGAAGTATAAAAAGAGAATGATTATTCCATTTTATAATTATTGTTTTCAATACTGTTCTTCTACTTGGGCTACGCGACCTCTACAAAAAAGGTGGCGCCTTTTTGTACGCAAGTTCCAACTACGGGTGAATATAGGGAAGTAAA
Unaligned ( gi|18 ): ATCAATTGATGTTTTCAATACTGCTCTTACTAAACAAGGCTACGAACTCGACAAAAAGTGAACATTTTTTGCATACAAAGTTCTAATAATAAAAATTCAGATATTTTTATTGGAATTAACATGTTAAC
Unaligned ( gi|20 ): GTTTTCAATACTGCCCTTACTAAACATGGGGCTTCGGAATCTACAAAAGGTGAGCATTTTTGCCCAATAATCTGATATCAAGGAATGGTTTTAATTAGAATAACCATG
Unaligned ( gi|23 ): ATGCAAATATTATGTACTTTTGACACAAACCCCACACCCAAAATGTTTTTTTTTCAAACTCACCAACTCTTCTTAGTAACAAAATGATGCAAAGTTTT
Unaligned ( gi|26 ): AATATTTAATGCCCCTCAAAGCAGAGACATATGTTACATGTATATATGTCTCTGCTGC
Unaligned ( gi|27 ): GGATTTTTAGTGATTTCTACCTTGAGTTTTAGCAGTAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 1111111 111111 222222 111 11 11111 111111 2222222222 111 222222222 2222222222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 11111111 1111 222 11111111
lowQualScore : 0 666666 5555555 77 666666 5 5 888888 000 0 888 5 5 2 22 0 3 1 55555 55 777777 99 4 0 0 1111111111 5 4 999 5 444444444 777 5 3 9999999999 6 5 77 77 5 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 66 000000 5 88888888 5 5 0000 66 4 55 0 2 3 666 666 7777 44444444 8888 9999 4 1
lowQualScore : . ...... ....... .. ...... . . ...... ... . ... . . . .. . . . ..... .. ...... .. . . . .......... . . ... . ......... ... . . .......... . . .. .. . .................................................................................................................... .. ...... . ........ . . .... .. . .. . . . ... ... .... ........ .... .... . .
lowQualScore : 0 444444 7777777 77 444444 7 7 000000 000 1 888 0 0 5 66 2 4 4 66666 66 666666 55 1 7 6 3333333333 4 4 444 0 555555555 222 0 4 2222222222 7 7 99 99 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 99 888888 6 11111111 0 0 6666 11 4 66 7 4 2 777 333 7777 55555555 5555 4444 4 1
consensus : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GAT-G-A-AATT-CGATAC--TTTTCT--TGGATT-TCACCGAGCAAATA----------ATCTG-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTATATA------------GCA-------AAATNATA------CG---CAA--TTAC--TT---------------AA--TGTT---A-TACTG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
Reference ( family-4034 ) : NNNNCATTG-TTGTCATA------TATACAACC-----ATATNCAATAT------TTTA-A-GCAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACACTTAG-GTGCTCATACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTTTTCAACCAAATCGGAAACTGTAAATTTTGAAATAAAGTGTATAAAATGCTTTCACTACTAA-GAT-G-A-AATT-CGATAC--TTTTCT--TGGATT-TCACCGAGCAAATA----------ATCTG-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CAC---------CT-------TAA----AAATTATATA------------GCA-------AAATNATA------CG---CAA--TTAC--TT---------------AA--TGTT---A-TACTG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTNACAGC--GAC-TGTTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCATATTAGGTAA
gi|1 : TCATA------CATACAACCGAATTATATGCAATTT------TTTA-AAGCAAA------ATATTTTACTGTAACTCTG---AAAAAGTT-GAAAAT-ATCACAC----------------ATTTCTC----TCTT-T-ATTGTATTTC---A--TTTTGCAACCACA-CTGAAACTGTAAAT---GAAATAGAAGGTATAAAATGCTT-----ATTAA-GATTG-A-A-------TAC--TTTTCT--AGGATT-T-ACTGAGCAAATACCGAGGAAGTATTTAACACAAATAACACCT--GCAAA-CAGA---GA---------CAC---------AT-------GAATGTTATATTATATATATGTCTCTGCTGCA-------AA-TCATG------CATTTCAACTTTTC--TTGGTTAAAAATAATAAAA--TGTT---T-TCATG--------TT-TT-GG----AAAGC--TG-AAA-GTGTCTACTTTACAGT--GA--TGTTAT----TTTTGTAACTGTATTTA--------TTACAACAAACAA----GATATAGATCTG-TTT
gi|10 : tattggaattaattaacagatgccatattcctgaaatatattttgagactggttgtcagaCA-------AAAGAATA------CA----AA--TTAC--TT---------------AA--TGTT---A-TACGG--------TT-TTTGG----AAAGC--TG-AAA-GTGTTTACTTTAAAGT--GA--TGAAAT----TCTTGAAACT--ATCTA--------TTACACCAAACAA----GAT----AT-TGTCTTCCATATTAttggctagtagaaatgcccactctgattt
gi|11 : gaaccagtaaatactaagttatagtgcacctgtgattaaacttccttaaccaactttcttgttAATAT------TTTTTA-GCAAA------GTAT---GTGGGAACTCTGGGAAAAAAGTCCGTAAATTGCCCCATTTAGAGTGGCTATAATATTTCTCTCTTTCTGGT-A----ATTTCGTTATTTTTTTC-ATCAATTTGGA---TGTACATTTTGAAAT-AAGTTTGTAAA
gi|12 : tactactagtaAAATA-TA--T--ACCGT--AAATCTGA---------ATT---------CT-------AAA----AAAATATATAT-----------ATA-------ACATG-TA------GG---TGA--TCA----T---------------AC--CATT---A-CAATG--------TT-TT-GG----AAAGC--T-----------------ACAGT--GA--TATTAT----TCTTGAAACTCT--CTA--------TTAAAG-AAATAA----GAA----ATCTG-CTTTCATATTAGGTAAgcgagcaaataacctgttaaaata
gi|13 : -GAT-G-A-AATT-CAAAAC--TTTCCT----GATTCTGATCAAGCAAATA----------ATTTG-TACAAACA-CA--TTCGCAAT-CAAATTTGATAAACCACCCAC---------CTTTCTTGGTAT----CAAATATACA------------GCA-------AAG-----------------AA--GTACCTTT---------------AAACTGTT---A-TA-TG---------T-TG-GG----AAAGA--TG-AAA--T-TCTACTTCA-AGC--GAC--GTTAT----TCTTGAgtagaaaattccaccttgattgtgctttagctg
gi|15 : AGCAAATA----------ACCTG-TTAAAATA-CA--T--GCAGTCCACATTTGA---------CA--------------------AA----AAAT
gi|16 : AC--TT---------------AA--TCCT---AATACTG--------TT-TC-GA----AACGC-----------GTCTACTTAACAGT--GA--TGGTAT----ACTTGAAATTGTGTCCA--------TTAAAGGAAACAA----TAT----TACTG-CTTCCATATTAGGacaacttcaatttatatatttttttcaatgtaaccgacttttctggtagcagatatgccgcaatacttgtgataatgtaaagaaaatacttta
gi|17 : attaaccaacttttcgtggtaacaagaaaatgtaaagcATTGGTTGTCATA------TATACAGCC-----ATA
gi|19 : tgtacactaagttcaatgatctgatatagaggacgaaatatttgttggaatcaacatgttaaacagacaccatacctggaatatacatgtacatatgtatttgtgaAAGC--TG-AAAAGTGT--A---AACAGT--GA--TGTTAT----TCTTGAAACAGTATCCATAAATTATTTAAAACAAACAA----GAT---------------ATATTAGGTAcatata
gi|2 : TGTCAAA------GATACATCC-----ATATACAATA-------TTTA-A-GCAAA------GTAT---ACTGTAACTTGG---AAcatctaagtagaaaagtccaccctgattttgttt
gi|21 : atactttcattctagaaaaactgggacaaaaacaaagtttctgaatattataagtcatttaattttggagctacggactctactgtgtattacacaatattgtagttaggttactgttcatcagatttctaaaaaattcattgcaatattacattttctaccactaaaaataaataagagaataatactctattttatcaattaatgttttcaatactgctcttaataaacatagggcaatggactctaccaaaagagagcatttttgcatacaacgttcacgttaccttatatcgaggagtaaatttttattggaattaacatgtaaacagatgccatatctgaaatacatttgtaaattgggGTCTACTTGACAGT--GA--TGTTTC----TCTTGAAAATGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTTATATTAGGTA
gi|22 : TCCA---AAAAAGTT-AAAAAT-ATCACACTTAA-ATTTTCATACCATTTCT-----TCTG-TCAT---ATTTCGTTA--TTTTTCATCCAAATTGGAAACTGTAAACTTTGAAATggatgaaaattccaccctagttgttttt
gi|24 : AAGTT-AAAAAT-ATCACACTTAG-GTGCTTATACCAATCC------------------------TTA--TTTTTGAACCACATCGGAAACTATTAATTTTGAAATAA--TGT--------CTTT-ACTACTGA-
gi|25 : TTTT----TCTTGAAACTGTATGAA--------TTAAAACAAACAA----GAT----ATCTG-CTTCCTTATTTAGTA
gi|3 : CATTG-TTGTCATA------TATACAACC-----ATATTCAATAT------TT-A-A-GCAAA-----CGTAT---ACCGTGACGCTG---AAAAAGT--AAAAAT-ATCACACTTAG-GTGCTCATGCTATTTCT-----TCTG-T-A----ATTTCGTTAC-TTTTTCAATCAAATTAGTAACTGTACATTTTGAAATAAAGTGTATAAAATGCATTTACTATTAA-GAT-----AATT----------TTTCT--TGGATT-TTACCGAACAAGTA----------AACTG-TACAAATA-CA--T--GCATC-CAAATTTCA---------CAC---------CT-------TAA----AAGTTATATA------------GCA-------AGATGATA------TG---CAA---TAC--TT---------------AA--TGTT---G-CACTG--------TT-TT-GG----AAAGT--TG-AAA-GTGTTTACTCTATGAC--GACTTATTAT----TCTTGAAACTGTATCTA--------TTAAAACAAACAA----AAT----ATCTA-CTTTCATATTATGTAAgtaataatttcttccctgattgtgtttaag
gi|4 : ataaTTTCT-----TCTG-T-C----ATTTTGTTA--TTTTTCAGCCAAATCGGAAACTGTAAATTTCGAAATAGAGTGTATAAAATGTTTTCACAACTAA-GAT-T-A-AAGTAAAATACTTTTTTCT--TGGATT-TCACCTTTCAAATA----------TTTTG-TATGAATA-CA--T--GCAGT-CAAATTTGA---------CAC-------------------------AAATTACACC------------TCA-------AAATCATATATTTTTG---CAA--T-----TT---------------AA----TC---A--ACTT--------TTCTT-GGTTACAAAATAATGCGAA-GTA-CTAAATAAATGCCATAC-CGCTCTGGAATATTGAAAGTGTATTT---------TTGATACTATCTATTTTTAT----ATCTG-CTTTCATATTAGGTAt
gi|5 : A--TTTTTCAGTCAAATTAGAAACTGTAAATTTTGAAACAAAGTGCACAAAATGCTTTTTCTACAAAAGAT-GGA-AATT-AAAAAC--TTGTCTCATGGATT-TCACTGAGCAAATA----------ATCTA-TACAAATA-CA--T--GCAGT-CAAATTTGA---------CACAAATTACATCC-------TCA----AAATCATATT------------GTATATTTTCAAATTA-A------C----CAACTTTTC--TT---------------GG--TGATGAAA-TAATGTGGAGTACTT-TT-GG----GAAGC--TG-AAA-GTGTCTACTTTATGGT--GAC--GTTAT----TCTTGACACTGCATCTG--------TTAAATCAAACAA----Gggtagaaaatccacccttattgtgctttagccga
gi|6 : G-TTGTCATA------TTTACAACC-----ATATACTATATATTCTATTTG-A-GCAAAGTACATGTAT---ATTGTAAC-CTG---AAAAAGTT-GAAAAT--TCACACTTAG-GTCCTGATATCGTTTCT-----TCTG-T-T----ATTTTGTAA--TTTTT-AACAAAATCGGAAACTGAAAAATTTGAAA-------------ATGCATTTACTACTAA-GAC-G-AGAATT-AAATACT-TTTTCC--TTGATC-TTACC
gi|8 : tatttttgtgaatttgTGTCATACTGTTTTATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG---AAAAAGTT-GAAAAT-AT--CACTTA--GTGCTCAAACCATTTCT-----TCTG-T-A----ATTTCGTTA--TTCTT-AATCAAATCGAAAACTGTACAGTTTGAA---------ATAAAATGCTTTCACTCCTAA-GAT-GCA-AATT-CGATACG-TTTTCT--TGGATT-TCttgca
gi|9 : aCATTA-CTGT--TT------TATACAA---------ATT-AATAT------TTTA-A-GAAAA-----CGTAT---ACTGTAACTCTG----AAAAGTT-GAAAAT-AT--CACTTA--GTGCTCA-AACATTTCT-----TCT--T-A----ATTTCG-----TTTCTTAATCAAATC-GAAACTGTACAGTTTGAA---------ATAAAATGCTTTCACTCCTAA-GAT-GCA-AATT-CGATACG-TTTTCT--TGGATT-CCccttg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGTAGCATAGCTTTTTCAAACCTAAAGAATAAAAAGAAAATATACTGCTGTTTTATAATTTATGTATTTGAATACCATTTTCCCTAAGTATAGAGCAACGCACTCTACAAAAGATGAGCATTTCTAACACTCTGATATCATGGAGTACATACATTTTTTGAATTTACATGTTCAATAGGATGTTCATACCTGAATATTATTCCGTAAATTATTTGTCATCA
Unaligned ( gi|14 ): TTTTTACAAACTCATTGAAGTATAAAAAGAGAATGATTATTCCATTTTATAATTATTGTTTTCAATACTGTTCTTCTACTTGGGCTACGCGACCTCTACAAAAAAGGTGGCGCCTTTTTGTACGCAAGTTCCAACTACGGGTGAATATAGGGAAGTAAA
Unaligned ( gi|18 ): ATCAATTGATGTTTTCAATACTGCTCTTACTAAACAAGGCTACGAACTCGACAAAAAGTGAACATTTTTTGCATACAAAGTTCTAATAATAAAAATTCAGATATTTTTATTGGAATTAACATGTTAAC
Unaligned ( gi|20 ): GTTTTCAATACTGCCCTTACTAAACATGGGGCTTCGGAATCTACAAAAGGTGAGCATTTTTGCCCAATAATCTGATATCAAGGAATGGTTTTAATTAGAATAACCATG
Unaligned ( gi|23 ): ATGCAAATATTATGTACTTTTGACACAAACCCCACACCCAAAATGTTTTTTTTTCAAACTCACCAACTCTTCTTAGTAACAAAATGATGCAAAGTTTT
Unaligned ( gi|26 ): AATATTTAATGCCCCTCAAAGCAGAGACATATGTTACATGTATATATGTCTCTGCTGC
Unaligned ( gi|27 ): GGATTTTTAGTGATTTCTACCTTGAGTTTTAGCAGTAA