lowQualScore : 11111111111111111111111111 11111111111111111111 1111111111
lowQualScore : 22222 66666666666666666666666666 22222 11 3 1 11111 11 1 1 1 8888888888888888 1 1 1 66666666666666666666 1 1 444444 11 1 2222222222 333 1 33333333 4444444 1 2222 11 44 1 11 1 3333 222 1 11 333333 11 333333333 44 333 222 3 1 3333 1 2222 1 1 1 5555555 111
lowQualScore : 5 5 99 0 3 0 5 5 2 8 0 8 11111 555 0 5 8 00000000000000000000000000 00000 11 3 8 0 6 2 1 2 6 99 1 7 77777 99 3 22 0 1 6 6 6 1 6 7 9999999999999999 3 5 0 2 4 66666666666666666666 2 3 777777 88 7 3 2222222222 666 3 22222222 2222222 3 7 3 0 0000 33 0 88 0 33 0 8888 4 333 3 88 222222 88 7 555555555 66 333 222 1 3 4444 0 1111 0 0 0 0 6 8888888 999
lowQualScore : . . .. . . . . . . . . . ..... ... . . . .......................... ..... .. . . . . . . . . .. . . ..... .. . .. . . . . . . . . ................ . . . . . .................... . . ...... .. . . .......... ... . ........ ....... . . . . .... .. . .. . .. . .... . ... . .. ...... .. . ......... .. ... ... . . .... . .... . . . . . ....... ...
lowQualScore : 0 0 55 1 1 5 0 0 5 0 8 0 66666 666 8 6 0 44444444444444444444444444 00000 00 8 0 8 7 5 8 5 7 77 7 3 77777 22 2 33 8 5 7 7 7 3 7 7 1111111111111111 3 0 0 5 5 33333333333333333333 0 3 333333 33 0 3 3333333333 333 3 00000000 0000000 7 7 2 0 8888 88 2 00 0 88 0 6666 0 333 3 33 777777 33 3 000000000 77 333 000 7 3 3333 0 2222 8 0 0 0 0 0000000 333
consensus : NCAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTCGTTTTCAGTTCTTTGATTTGATTG-TTCANAAATAATGCAAAA-----N-----AAAAAAG-----AAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTA-A-NCCCATTTT---AGACCACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATGGTT-TCCCAATTTCAGGTTTTCACTCA-------------AC-TTACAGATAGTTT-ATTGTCAGTGT----------------A---ATTGTTAT-TTGATA-TTT--AAAATAAAT--TTTCAATAA-TGGAGAG---------GATGTGGT-GTTGG-CTG-TA----AGGG--AGTG-TGGAGGNCANTTTTTG-TT--A-AAG--AGTATGACTAATCATTCAT-TTT-AC--AT-CTTATATTAA--GTNTTTGA---TCAATACT-AA--TG-T----TTAT--AATACTCTT----GCA--GTTATATATG--TTCCTATTT---TCCATTATA-TTTC-AAA-AC-TTA-ATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT---TT--TTGCCCAAAAG-TCACTTGACAGCCT
Reference ( gi|1 ) : CCAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTAGTTTTTAGTTCTTTGATTTGATTG-TTC-------ATGC---------T-----AAAAAAG-----AAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAGTAAGTTTTTA-A-ACCTATTTT---ACACCACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATTGTT-TCCCAATTTCACGTTTTCACT-A-------------AC-TTACAGATAGTTT-ATTGTCAATGTACAATGTAC----AGAA---ATTGTTAT-TTGATA-TTT--AAAATAAAT--TTTAAATAA-TGGAGAG---CGATACGATGTGGT-TTTGG-CTGCTA----AGGG-TAGTG-TGGAGGCCATTTTTTG-TT--A-AAG--AGTATGACTAATCATTCATAATT-AC--AT-CTTATATTAATGGTATTTGA---TCAATACT-AA--TG-T----TTAT--AATACTCTT----GCACTGTTATATATGGTTTCCTATTTG--TCCATTATAGTTTC-AAACAC-TTA-ATTCCTA----TTTTTTTC-AAATT-TT-CCTACATTT---TTTGTTGCCCAAAAG-TAACTTGACAGCCT
gi|15 : CAGGCTGTCAAATCT-CCT-ATATTTTTC-T--------GG-G-AGTTCCTTTATTTTCCTA
gi|2 : AGG-TGTCAAGTCT-CCT-ATATTTTCA-CATT---CAGGAG-AGTTCCTTTATTTTCCTATCATTGGGCCAAAATCCTCCTATATATTCCTATATTTTGGCAATAAAGGTGTCGTTTTCA-TTCTTTGATT------------------------------T-----AAAAAAGATTGAAAGTCCGAAATCAAGTCTAA-CATG-CATACTTACACTCAATTAGTAA---TTTA-ACACC-ATTTTAAGACCCCACCT--TATATTTTATACATTTATGAACAACCAATACCTGGTATCCGTAAACTTACAGCATACCGGCAATTATTAAAACATGAGTGAAAAAATAGCTTTT--CCCTTTTG-TA-TGTTCCCCCAATTTCA-ATTTTCACTCAAGGTTAAAAAACCAC-TTACAGATAGTTT-ATTGTCAATGT----------------A---ATT-TTAT-TTAATA-TGTGAAAAATAAAT--TCTCAATAATTGAAGA----------AATGTGGTAATTGG-CTG-TA----AGGG--AGT----GGGGCCAATTTTTG-TT--A-AAGGTATTATGACTAATCA
gi|7 : AGGCTGGCAAGGTT-CCTGATATTTCCT-TATTTTTCAGG-G-A-TTCCTTTATTTTCCTAC-ATTTTGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAG-TGTCGTTTTCAGTTCTTTGATTTGATTG-TTCAAAAATAATGC---------G-----AAAAAAG-----AAGTC--AAATCAAGT-TAACCATGACATACTTGCA-TCATTTAG-AAGTTTTTA-A-CCCCA-TTT---AAACCACTT--TATATTTTATACATTTATGAACAACCAATA--TGGTATAAATGAA-TTACAACATG-CAGCAA-TATTAAAACATGAGTG-AAGAATAGCTTTTT
gi|16 : AGGCTGTCAAGTGT-CCT-ATATTTTCC-TATTTTTCTGG-G-AGT
gi|5 : GGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCTGG-G-AGTTCTTATATTTTCCTAT-ATTTGGGCAAATACCTCTAAT-T-TTCCTATATTTTGGCAATAACGCTGTCATTTTTAGTTTTTTGATTTG-TTGCTTCATAAATAATGCAAAAAAAAAA-----AAAAAAG-----AAGTC--AAA-CAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTACA-ACCCATTTT---A-A--------------TTACACATTTATGAACAACCAATA-TTGGTATCAATGAACTTCCAGCATG-CAGCAA-TATTAAAACATGAGTG--AAAATAACTTTTTGCCCTTTTGATATAGTT-TACCAATTTCAGGTTTTCACT-
gi|14 : GCTGTCA-GTCTACCT-ATATTTTC--TATTTT-CAGG-G-AGTTCCTTc
gi|4 : atacacaCTGGCAAGGTT-CCT-ATATTTTCCTTATTTTTCAGG-G-A-TTCCTTTATTTTCCTAC-ATTTTGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAG-TGTCGTTTTCAGTTCTTTGATTTGATTG-TTCAAAAATAATGC---------G-----AAAAAAG-----AAGTC--AAATCAAGT-TAACCATGACATACTTGCA-T-ATTTAG-AAGTTTTTA-A-CCCCA-TTT---AAACCACTT--TATA-TTTATACATTTATGAACAACCAATA-TTGGTATAAATGAA-TTACAACATG-CAGCAA-TATTAAAACATGAGTG-AAGAATAGCTTTTTGCCC-TTTGATATGGTT-TCCCAATTTCAGGTTTTCA
gi|3 : AAGTCT-CCT-ATATTTTCA-TATTTTTTAAG-GTAGTTCTTTTATTTTCTTAT-ATATGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGC-------------TCTTTGATTTGATTG-TTCATAAATAATGCAAAA-----TTAAAAAAAAAAA-----AAATC--AAACCAAGT-TAACTATGACA----TACA-TAATTTAG-AATTTTTTA-A-AACCATTTT---AGACCCCTT--TATATTTTATACATTCATAAAC--------------ATCAATGAACTTGCAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGTCCTTTTGATATGATT-TCCCAATTTCAAGTTTTCACT-tgttaaaacactttaaca
gi|8 : gCATACTTACA-TCATTTAG-AAGTTTTTA-A-CCCCATTTT---AGACCACTAAATATATTTCATACATTTATGAACAACTAATA-TTGGTATCAA--------CAACATG-CAGCAA-TATTAAAACATGAATG-AAAAATAGCTTTTTGCCCTATTGATATGGTT-TCCCAGTTTCAGGTTTTCACTCA-------------ATGTTA-AAACACTTTAATTAACAGTGcatgttaaaacacttttataacagggattccatttactggc
gi|12 : CTTTTTGCCCTTTTGATATGGTT-TCCCAATCT--TGTTAAAAC----------------AC-TTA-AGGTAGT
gi|10 : ACAGATCGTTT-ATTGTCAGTGTA---------------A---ATTGTTAT-TTGATA-TT---GAAATAAAT--TTTAAATAA-TGGAGAG--------TGATGTGG---TTGG-CT-CTA----AGGG-GAG-G-TGGAGGTAAGTTTTTGTTT--A-AAA--AGTATGACCAATCATTCAT-TTT-AC--AT-CTTATATCAAatgaaacgttcgtc
gi|6 : atttaagttttcccatacaaaaATAGTTT-ATTGT----GTCTAATACTCTCGTAGAATTGATTAGCATGTTGATAATTTCCATAACTAATGATTTCAATAA-TGGAGAAGTCCG----GATGTGGT-GTTGGTCTGGTATAAGAGGGATGGTGGTGCAAAACATCTT--G-TTCCACAAG--GATATGACTAATCATTTATTTTT-ACCTATCCTTAAGTT-----TCTTTGACCTTCAATACT-AATCTGTT----TTAT--AATATCCTTTACAGCA--GTTATATATG--TTCCTATTCGTTTCC-TTATATTCTC-AAA-AC-ATATATTCCTAATTGTTCTGTTCAAAATTATTGCCTATATTTGTGTCTTTTGCACAAAAgtg
gi|9 : cgaTTG-TT--C-AAG--AGTATGACTAATCATTTAT--TTCAC--AG-CTTATATTAAGTGTATTTGA---TCAATACT-AA--TG-TTTAATTAT--AATACTCTT----GTACTGTTATATATGG-TACCCATTT---TCCA-TATA-TTTCAAAACA--TTA-ATTCCTA----TCGTTTTC-TAATT-TT-CCTATATTT---T---TTGCCCAGAAG-TCACTTGATAGCttcgacttctgac
gi|11 : ATTCATG-TT-AC--AT-CTTGTATTAA--GTGATTGA---CCAATACCCAA--TG-T----TTGTTTAA-ACTCTT----GCA--GTTATATATG--TTCCTATTTT--TCCAT-ATA-TTTC-AAA-ACATTA-ATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT---TT--TTGCCCAAAAGTTCACTTGACAGCCT
gi|13 : -ATTCCTA----TTTTTTTC-ACATT-TT-GCTATATTT---GT--TTGCCCAAAAG-TCACTTGACAGCCT
Alignments
lowQualScore : 1 4444444444 11111 1 1111 5555555555555555 111 77777777777777777777777 11 11111 222222 11 555555555555 11 1 222 11 22222222 1 1111 11 11 22 11 111 1 11 2222 1 11 2222 22 11 1 111 111 1 1 1 2 1111 22222 11
lowQualScore : 4 4 77 1 4 4 1 6 6 0 2 3 6 9 2222222222 66666 99 1 6 1 5 0 1 0 5 1 5 66 77 77 1 99 7 5 5 5 5 2222 2 1111111111111111 2 8 444 00000000000000000000000 22 88888 888888 33 2 777777777777 2 00 0 777 33 22222222 1 0 8 4444 11 99 8 11 3 22 1 33 777 0 33 1111 0 33 3 1111 77 33 0 777 111 999 0 0 0 0 8 7777 8 8 8 0 00000 11 8 8
lowQualScore : . . .. . . . . . . . . . . . .......... ..... .. . . . . . . . . . . .. .. .. . .. . . . . . .... . ................ . . ... ....................... .. ..... ...... .. . ............ . .. . ... .. ........ . . . .... .. .. . .. . .. . .. ... . .. .... . .. . .... .. .. . ... ... ... . . . . . .... . . . . ..... .. . .
lowQualScore : 4 4 33 8 4 4 1 7 7 8 5 2 7 8 2222222222 77777 22 7 7 0 7 7 4 7 7 0 0 11 99 99 4 33 9 7 7 7 3 1111 5 5555555555555555 5 0 000 00000000000000000000000 55 55555 888888 88 5 888888888888 5 22 0 555 88 00000000 0 8 0 8888 00 00 0 00 8 00 0 88 555 0 88 2222 0 88 2 2222 55 88 0 555 000 888 0 0 0 0 0 0000 0 0 0 8 00000 00 0 0
consensus : NCAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTCGTTTTCAGTTCTTTGATTTGATTG-TTCA-AAATAATGCA-----AAAAAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAATTTCAGGTTTTC----ACTCA-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GTA-----------A--ATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTNAATAATGGAGA-----GC-----GATGTGGT-GTTGG-CTG---TAAG--GG-A--GTG-TGGAGGCCANTTTTTG-TT--A-AAG--AGTATGACTAATCATTCAT-TTT-AC--ATCTTATATTAA--GTAT--TTGA---TCAATACT-AAT--GT----TT-AT--AATACTCTT----GCACTGTTATATATG--TT-CCTAT---TT-T-CCATTATA-TT-TCAAA-ACATTA-ATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAG-TC-ACTTGACAGCCT
Reference ( family-3992 ) : NCAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTCGTTTTCAGTTCTTTGATTTGATTG-TTCANAAATAATGCA-----AAANAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTA-ANCCCATTTTA-GACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAATTTCAGGTTTTC----ACTCA-------------AC-TTACAGATAGTTT-ATTGT---CAGT------GT------------A--ATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTCAATAATGGAGA-----G------GATGTGGT-GTTGG-CTG---TAAG--GG-A--GTG-TGGAGGNCANTTTTTG-TT--A-AAG--AGTATGACTAATCATTCAT-TTT-AC--ATCTTATATTAA--GTNT--TTGA---TCAATACT-AAT--GT----TT-AT--AATACTCTT----GCA--GTTATATATG--TT-CCTAT---TT-T-CCATTATA-TT-TCAAA-AC-TTA-ATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAG-TC-ACTTGACAGCCT
gi|1 : CAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTAGTTTTTAGTTCTTTGATTTGATTG-TTCA-------TGC---------TAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAGTAAGTTTTTA-AACCTATTTTA-CACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATTGTTTCCCAATTTCACGTTTTC----ACT-A-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GTACAATGTACAGAA--ATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTAAATAATGGAGA-----GCGATACGATGTGGT-TTTGG-CTGC--TAAG--GGTA--GTG-TGGAGGCCATTTTTTG-TT--A-AAG--AGTATGACTAATCATTCATAATT-AC--ATCTTATATTAATGGTAT--TTGA---TCAATACT-AAT--GT----TT-AT--AATACTCTT----GCACTGTTATATATGGTTT-CCTAT---TTGT-CCATTATAGTT-TCAAACAC-TTA-ATTCCTA----TTTTTTTC-AAATT-TT-CCTACATTT-----TTTGTTGCCCAAAAG-TA-ACTTGACAGCCT
gi|10 : cTTTAAGTTTTCCCATACAAA-------------A----ACAGATCGTTT-ATTGT---CAGT------GTA-----------A--ATTG-TTA---T-TTGATA--TT--GAAATAAAT--TTTAAATAATGGAGA-----GT-----GATGTG---GTTGG-CTC---TAAG--GG-G--AGG-TGGAGGTAAGTTTTTGTTT--A-AAA--AGTATGACCAATCATTCAT-TTT-AC--ATCTTATATCAA--GT
gi|11 : aATTCAT-GTT-AC--ATCTTGTATTAA--GTGA--TTGA---CCAATACCCAAT--GT----TT-GTTTAA-ACTCTT----GCA--GTTATATATG--TT-CCTAT---TT-TTCCAT-ATA-TT-TCAAA-ACATTA-ATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAGTTC-ACTTGACAGCCTg
gi|12 : CTTTTTGCCCTTTTGATATGGTTTCCCAATCT
gi|13 : -ATTCCTA----TTTTTTTC-ACATT-TT-GCTATATTT-----GT--TTGCCCAAAAG-TC-ACTTGACAGCCTtgttaaaacacttaaggtagtatgaaacgttcgtc
gi|14 : GCTGTCA-GTCTACCT-ATATTTTC--TATTTT-CAGG-G-AGTTCCTTgg
gi|15 : atacacaCAGGCTGTCAAATCT-CCT-ATATTTTTC-T--------GG-G-AGTTCCTTTATTTTCCTA
gi|16 : AGGCTGTCAAGTGT-CCT-ATATTTTCC-TATTTTTCTGG-G-AGT
gi|2 : AGG-TGTCAAGTCT-CCT-ATATTTTCA-CATT---CAGGAG-AGTTCCTTTATTTTCCTATCATTGGGCCAAAATCCTCCTATATATTCCTATATTTTGGCAATAAAGGTGTCGTTTTCA-TTCTTTGATTT--------------------A-----AAAAAGATTG-----AAAGTCCGAAATCAAGTCTAAC-ATG-CATACTTACACTCAATTAGTAA---TTTA-ACACCATTTTAAGACCCCACCT--TATATTTTATACATTTATGAACAACCAATACCTGGTATCCGTAAACTTACAGCATACCGGCAATTATTAAAACATGAGTGAAAAAATAGCTTTT--CCCTTTTG-TATGTTCCCCCAATTTCA-ATTTTC----ACTCAAGGTTAAAAAACCAC-TTACAGATAGTTT-ATTGT---CAAT------GT------------A--ATT--TTA---T-TTAATA-TGTGAAAAATAAAT--TCTCAATAATTGAAG-----A------AATGTGGTAATTGG-CTG---TAAG--GG-A--GT----GGGGCCAATTTTTG-TT--A-AAGGTATTATGACTAATCA
gi|3 : AAGTCT-CCT-ATATTTTCA-TATTTTTTAAG-GTAGTTCTTTTATTTTCTTAT-ATATGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGC-------------TCTTTGATTTGATTG-TTCATAAATAATGCAAAATTAAAAAAAAAA-----AAAATC--AAACCAAGT-TAACTATGACA----TACA-TAATTTAG-AATTTTTTA-AAACCATTTTA-GACC--CCTT--TATATTTTATACATTCATAAAC--------------ATCAATGAACTTGCAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGTCCTTTTGATATGATTTCCCAATTTCAAGTTTTC----ACTCA-------------
gi|4 : gCTGGCAAGGTT-CCT-ATATTTTCCTTATTTTTCAGG-G-A-TTCCTTTATTTTCCTAC-ATTTTGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAG-TGTCGTTTTCAGTTCTTTGATTTGATTG-TTCAAAAATAATGC---------GAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTGCA-T-ATTTAG-AAGTTTTTA-ACCCCA-TTTA-AACC--ACTT--TATA-TTTATACATTTATGAACAACCAATA-TTGGTATAAATGAA-TTACAACATG-CAGCAA-TATTAAAACATGAGTG-AAGAATAGCTTTTTGCCC-TTTGATATGGTTTCCCAATTTCAGGTTTTC----Atgttaaaacacttttataacagggattccatttactggc
gi|5 : GGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCTGG-G-AGTTCTTATATTTTCCTAT-ATTTGGGCAAATACCTCTAAT-T-TTCCTATATTTTGGCAATAACGCTGTCATTTTTAGTTTTTTGATTTG-TTGCTTCATAAATAATGCA-----AAAAAAAAAAAAAAAGAAGTC--AAA-CAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTACAACCCATTTTA-A-----------------TTACACATTTATGAACAACCAATA-TTGGTATCAATGAACTTCCAGCATG-CAGCAA-TATTAAAACATGAGTG--AAAATAACTTTTTGCCCTTTTGATATAGTTTACCAATTTCAGGTTTTC----ACTCtgttaaaacactttaaca
gi|6 : ATAGTTT-ATTGTGTCTAATACTCTCGT------------AGAATTGATTAGCATGTTGATAATTTCCATAACTAATGATTTCAATAATGGAGAAGTCCG------GATGTGGT-GTTGGTCTGGTATAAGAGGG-ATGGTGGTGCAAAACA--TCTTG-TTCCACAAG--GATATGACTAATCATTTAT-TTTTACCTATCCT----TAA--GTTTCTTTGACCTTCAATACT-AATCTGT----TTTAT--AATATCCTTTACAGCA--GTTATATATG--TT-CCTATTCGTT-T-CC-TTATA-TTCTCAAA-AC-ATATATTCCTAATTGTTCTGTTCAAAATTATTGCCTATATTTGTGTCTT--TTGCACAAAAT-TCGACTT
gi|7 : cgaAGGCTGGCAAGGTT-CCTGATATTTCCT-TATTTTTCAGG-G-A-TTCCTTTATTTTCCTAC-ATTTTGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAG-TGTCGTTTTCAGTTCTTTGATTTGATTG-TTCAAAAATAATGC---------GAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTGCA-TCATTTAG-AAGTTTTTA-ACCCCA-TTTA-AACC--ACTT--TATATTTTATACATTTATGAACAACCAATA--TGGTATAAATGAA-TTACAACATG-CAGCAA-TATTAAAACATGAGTG-AAGAATAGCTTTTTctgac
gi|8 : CATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTAAATATATTTCATACATTTATGAACAACTAATA-TTGGTATCAA--------CAACATG-CAGCAA-TATTAAAACATGAATG-AAAAATAGCTTTTTGCCCTATTGATATGGTTTCCCAGTTTCAGGTTTTC----ACTCA-------------ATGTTA-AAACACTTTAATTAA---CAGT------G
gi|9 : TTG-TT--C-AAG--AGTATGACTAATCATTTAT-TTC-AC--AGCTTATATTAAGTGTAT--TTGA---TCAATACT-AAT--GTTTAATT-AT--AATACTCTT----GTACTGTTATATATG--GTACCCAT---TT-T-CCA-TATA-TT-TCAAA-ACATTA-ATTCCTA----TCGTTTTC-TAATT-TT-CCTATA-TT-----TT--TTGCCCAGAAG-TC-ACTTGATAGC
Alignments
lowQualScore : 1 333333333333333333 11111 1 1111 5555555555555555 111 666666666666666666666 11 11111 1 333 11 44444444 22 1 222 11 22222222 1 2222 11 11 111111111 111 1 11 1 2222222 2222 11 11 1 11111 1 11 1 1 1 1111 22222 11
lowQualScore : 4 4 77 1 4 4 1 6 6 0 2 3 6 111111111111111111 66666 99 1 6 1 5 0 1 0 5 0 5 66 77 77 1 99 7 5 5 5 5 2222 2 1111111111111111 2 8 444 444444444444444444444 22 88888 0 000 33 1 2 66666666 22 0 777 33 22222222 0 0 2222 11 8 99 11 0 444444444 777 0 33 0 6666666 3 1111 88 33 0 88888 0 88 0 0 3 0 7777 8 8 8 0 00000 11 8 8
lowQualScore : . . .. . . . . . . . . . . .................. ..... .. . . . . . . . . . . .. .. .. . .. . . . . . .... . ................ . . ... ..................... .. ..... . ... .. . . ........ .. . ... .. ........ . . .... .. . .. .. . ......... ... . .. . ....... . .... .. .. . ..... . .. . . . . .... . . . . ..... .. . .
lowQualScore : 4 4 33 8 4 4 1 7 7 8 5 2 7 555555555555555555 77777 22 7 7 0 7 7 4 7 7 7 0 11 99 99 4 33 9 7 7 7 3 1111 5 5555555555555555 5 0 000 888888888888888888888 55 55555 0 888 88 0 5 88888888 88 0 555 88 00000000 2 8 8888 00 0 00 00 8 888888888 555 0 88 0 0000000 2 2222 00 88 0 55555 0 88 0 0 2 0 0000 0 0 0 8 00000 00 0 0
consensus : NCAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTCGTTTTCAGTTCTTTGATTTGATTG-TTC-A-AAATAATGCA-----AAAAAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAATTTCAGGTTTTC----ACTCA-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GT-----------A-AATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTNAATAATGGAGAG-----CG-ATGTGGT-NTTGG-CTG---TAAG--GG-A--GTG-TGGAGGCCANTTTTTGTT--A-AAG--AGTATGACTAATCATTCA-T-TTTAC--ATCTTATATTAA--G--T--ATTTGA---TCAATACT-AA--TG-TTTA----T--AATACTCTT----GCACTGTTATATATG--TT-CCTA-T---TT-TCCATTATA-TT-TCAAAACA-TTAATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAG-TC-ACTTGACAGCCT
Reference ( family-3992 ) : NCAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTCGTTTTCAGTTCTTTGATTTGATTG-TTC-A-AAATAATGCA-----AAAAAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAATTTCAGGTTTTC----ACTCA-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GT-----------A-AATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTNAATAATGGAGAG-----CG-ATGTGGT-GTTGG-CTG---TAAG--GG-A--GTG-TGGAGGCCANTTTTTGTT--A-AAG--AGTATGACTAATCATTCA-T-TTTAC--ATCTTATATTAA--G--T--ATTTGA---TCAATACT-AA--TG-TTTA----T--AATACTCTT----GCACTGTTATATATG--TT-CCTA-T---TT-TCCATTATA-TT-TCAAAACA-TTAATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAG-TC-ACTTGACAGCCT
gi|1 : CAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTAGTTTTTAGTTCTTTGATTTGATTG-TTC-A-------TGCT-----AAAAAA---------GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAGTAAGTTTTTA-AACCTATTTTA-CACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATTGTTTCCCAATTTCACGTTTTC----ACT-A-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GTACAATGTACAGA-AATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTAAATAATGGAGAGCGATACG-ATGTGGT-TTTGG-CTGC--TAAG--GGTA--GTG-TGGAGGCCATTTTTTGTT--A-AAG--AGTATGACTAATCATTCA-TAATTAC--ATCTTATATTAATGG--T--ATTTGA---TCAATACT-AA--TG-TTTA----T--AATACTCTT----GCACTGTTATATATGGTTT-CCTA-T---TTGTCCATTATAGTT-TC-AAACACTTAATTCCTA----TTTTTTTC-AAATT-TT-CCTACATTT-----TTTGTTGCCCAAAAG-TA-ACTTGACAGCCT
gi|10 : cTTTAAGTTTTCCCATACAAA-------------A----ACAGATCGTTT-ATTGT---CAGT------GT-----------A-AATTG-TTA---T-TTGATA-TT---GAAATAAAT--TTTAAATAATGGAGAG-----TG-ATGTGGT---TGG-CTC---TAAG--GG-G--AGG-TGGAGGTAAGTTTTTGTTT-A-AAA--AGTATGACCAATCATTCA-T-TTTAC--ATCTTATATCAA--G--T--
gi|11 : aATTCA-T-GTTAC--ATCTTGTATTAA--G--T--GATTGA---CCAATACCCAA--TG-TTTG----TTTAA-ACTCTT----GCA--GTTATATATG--TT-CCTATT---TT-TCCA-TATA-TT-TCAAAACA-TTAATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAGTTC-ACTTGACAGCCTg
gi|12 : CTTTTTGCCCTTTTGATATGGTTTCCCAATCT
gi|13 : ATTCCTA----TTTTTTTC-ACATT-TT-GCTATATTT-----GT--TTGCCCAAAAG-TC-ACTTGACAGCCTtgttaaaacacttaaggtagtatgaaacgttcgtc
gi|14 : GCTGTCA-GTCTACCT-ATATTTTC--TATTTT-CAGG-G-AGTTCCTTgg
gi|15 : atacacaCAGGCTGTCAAATCT-CCT-ATATTTTTC-T--------GG-G-AGTTCCTTTATTTTCCTA
gi|16 : AGGCTGTCAAGTGT-CCT-ATATTTTCC-TATTTTTCTGG-G-AGT
gi|2 : AGG-TGTCAAGTCT-CCT-ATATTTTCA-CATT---CAGGAG-AGTTCCTTTATTTTCCTATCATTGGGCCAAAATCCTCCTATATATTCCTATATTTTGGCAATAAAGGTGTCGTTTTCA-TTCTTTGATTT---------------------A-----AAAAAGATTG-----AAAGTCCGAAATCAAGTCTAAC-ATG-CATACTTACACTCAATTAGTAA---TTTA-ACACCATTTTAAGACCCCACCT--TATATTTTATACATTTATGAACAACCAATACCTGGTATCCGTAAACTTACAGCATACCGGCAATTATTAAAACATGAGTGAAAAAATAGCTTTT--CCCTTTTG-TATGTTCCCCCAATTTCA-ATTTTC----ACTCAAGGTTAAAAAACCAC-TTACAGATAGTTT-ATTGT---CAAT------GT-------------AATT--TTA---T-TTAATA-TGTGAAAAATAAAT--TCTCAATAATTGA-AG-----AA-ATGTGGTAATTGG-CTG---TAAG--GG-A--GT----GGGGCCAATTTTTGTT--A-AAGGTATTATGACTAATCA
gi|3 : AAGTCT-CCT-ATATTTTCA-TATTTTTTAAG-GTAGTTCTTTTATTTTCTTAT-ATATGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGC-------------TCTTTGATTTGATTG-TTC-ATAAATAATGCAAAATTAAAAAAAAAA-----AAAATC--AAACCAAGT-TAACTATGACA----TACA-TAATTTAG-AATTTTTTA-AAACCATTTTA-GACC--CCTT--TATATTTTATACATTCATAAAC--------------ATCAATGAACTTGCAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGTCCTTTTGATATGATTTCCCAATTTCAAGTTTTC----ACTCA-------------
gi|4 : gCTGGCAAGGTT-CCT-ATATTTTCCTTATTTTTCAGG-G-A-TTCCTTTATTTTCCTAC-ATTTTGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAG-TGTCGTTTTCAGTTCTTTGATTTGATTG-TTCAA-AAATAATGC---------GAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTGCA-T-ATTTAG-AAGTTTTTA-ACCCCA-TTTA-AACC--ACTT--TATA-TTTATACATTTATGAACAACCAATA-TTGGTATAAATGAA-TTACAACATG-CAGCAA-TATTAAAACATGAGTG-AAGAATAGCTTTTTGCCC-TTTGATATGGTTTCCCAATTTCAGGTTTTC----Atgttaaaacacttttataacagggattccatttactggc
gi|5 : GGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCTGG-G-AGTTCTTATATTTTCCTAT-ATTTGGGCAAATACCTCTAAT-T-TTCCTATATTTTGGCAATAACGCTGTCATTTTTAGTTTTTTGATTTG-TTGCTTC-ATAAATAATGCA-----AAAAAAAAAAAAAAAGAAGTC--AAA-CAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTACAACCCATTTTA-A-----------------TTACACATTTATGAACAACCAATA-TTGGTATCAATGAACTTCCAGCATG-CAGCAA-TATTAAAACATGAGTG--AAAATAACTTTTTGCCCTTTTGATATAGTTTACCAATTTCAGGTTTTC----ACTCtgttaaaacactttaaca
gi|6 : ATAGTTT-ATTGTGTCTAATACTCTCGT-----------AGAATTGATTAGCATGTTGATAATTTCCATAACTAATGATTTCAATAATGGAGAAGTC--CGGATGTGGT-GTTGGTCTGGTATAAGAGGG-ATGGTGGTGCAAAACA--TCTTGTTCCACAAG--GATATGACTAATCATTTATT-TTTACCTATCC----TTAA--GTTT--CTTTGACCTTCAATACT-AATCTGTTTTA----T--AATATCCTTTACAGCA--GTTATATATG--TT-CCTA-TTCGTT-TCC-TTATA-TTCTCAAAACA-TATATTCCTAATTGTTCTGTTCAAAATTATTGCCTATATTTGTGTCTT--TTGCACAAAAT-TCGACTT
gi|7 : cgaAGGCTGGCAAGGTT-CCTGATATTTCCT-TATTTTTCAGG-G-A-TTCCTTTATTTTCCTAC-ATTTTGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAG-TGTCGTTTTCAGTTCTTTGATTTGATTG-TTCAA-AAATAATGC---------GAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTGCA-TCATTTAG-AAGTTTTTA-ACCCCA-TTTA-AACC--ACTT--TATATTTTATACATTTATGAACAACCAATA--TGGTATAAATGAA-TTACAACATG-CAGCAA-TATTAAAACATGAGTG-AAGAATAGCTTTTTctgac
gi|8 : CATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTAAATATATTTCATACATTTATGAACAACTAATA-TTGGTATCAA--------CAACATG-CAGCAA-TATTAAAACATGAATG-AAAAATAGCTTTTTGCCCTATTGATATGGTTTCCCAGTTTCAGGTTTTC----ACTCA-------------ATGTTA-AAACACTTTAATTAA---CAGT------G
gi|9 : TTGTT--C-AAG--AGTATGACTAATCATTTA-T-TTCAC--AGCTTATATTAA--G--TGTATTTGA---TCAATACT-AA--TG-TTTAATTAT--AATACTCTT----GTACTGTTATATATG--GTACCCA-T---TT-TCCA-TATA-TT-TCAAAACA-TTAATTCCTA----TCGTTTTC-TAATT-TT-CCTATA-TT-----TT--TTGCCCAGAAG-TC-ACTTGATAGC
Alignments
lowQualScore : 1 333333333333333333 11111 1 1111 5555555555555555 111 666666666666666666666 11 11111 1 333 11 44444444 22 1 222 11 22222222 1 2222 11 11 111111111 111 1 11 1 2222222 2222 11 11 1 11111 1 11 1 1 1 1111 22222 11
lowQualScore : 4 4 77 1 4 4 1 6 6 0 2 3 6 111111111111111111 66666 99 1 6 1 5 0 1 0 5 0 5 66 77 77 1 99 7 5 5 5 5 2222 2 1111111111111111 2 8 444 444444444444444444444 22 88888 0 000 33 1 2 66666666 00 0 777 33 22222222 0 0 2222 11 8 99 11 0 444444444 777 0 33 0 6666666 3 1111 88 33 0 88888 0 88 0 0 3 0 7777 8 8 8 0 00000 11 8 8
lowQualScore : . . .. . . . . . . . . . . .................. ..... .. . . . . . . . . . . .. .. .. . .. . . . . . .... . ................ . . ... ..................... .. ..... . ... .. . . ........ .. . ... .. ........ . . .... .. . .. .. . ......... ... . .. . ....... . .... .. .. . ..... . .. . . . . .... . . . . ..... .. . .
lowQualScore : 4 4 33 8 4 4 1 7 7 8 5 2 7 555555555555555555 77777 22 7 7 0 7 7 4 7 7 7 0 11 99 99 4 33 9 7 7 7 3 1111 5 5555555555555555 5 0 000 888888888888888888888 55 55555 0 888 88 0 5 88888888 88 0 555 88 00000000 2 8 8888 00 0 00 00 8 888888888 555 0 88 0 0000000 2 2222 00 88 0 55555 0 88 0 0 2 0 0000 0 0 0 8 00000 00 0 0
consensus : NCAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTCGTTTTCAGTTCTTTGATTTGATTG-TTC-A-AAATAATGCA-----AAAAAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAATTTCAGGTTTTC----ACTCA-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GT-----------A-AATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTNAATAATGGAGAG-----CG-ATGTGGT-NTTGG-CTG---TAAG--GG-A--GTG-TGGAGGCCANTTTTTGTT--A-AAG--AGTATGACTAATCATTCA-T-TTTAC--ATCTTATATTAA--G--T--ATTTGA---TCAATACT-AA--TG-TTTA----T--AATACTCTT----GCACTGTTATATATG--TT-CCTA-T---TT-TCCATTATA-TT-TCAAAACA-TTAATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAG-TC-ACTTGACAGCCT
Reference ( family-3992 ) : NCAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTCGTTTTCAGTTCTTTGATTTGATTG-TTC-A-AAATAATGCA-----AAAAAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAATTTCAGGTTTTC----ACTCA-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GT-----------A-AATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTNAATAATGGAGAG-----CG-ATGTGGT-NTTGG-CTG---TAAG--GG-A--GTG-TGGAGGCCANTTTTTGTT--A-AAG--AGTATGACTAATCATTCA-T-TTTAC--ATCTTATATTAA--G--T--ATTTGA---TCAATACT-AA--TG-TTTA----T--AATACTCTT----GCACTGTTATATATG--TT-CCTA-T---TT-TCCATTATA-TT-TCAAAACA-TTAATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAG-TC-ACTTGACAGCCT
gi|1 : CAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTAGTTTTTAGTTCTTTGATTTGATTG-TTC-A-------TGCT-----AAAAAA---------GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAGTAAGTTTTTA-AACCTATTTTA-CACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATTGTTTCCCAATTTCACGTTTTC----ACT-A-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GTACAATGTACAGA-AATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTAAATAATGGAGAGCGATACG-ATGTGGT-TTTGG-CTGC--TAAG--GGTA--GTG-TGGAGGCCATTTTTTGTT--A-AAG--AGTATGACTAATCATTCA-TAATTAC--ATCTTATATTAATGG--T--ATTTGA---TCAATACT-AA--TG-TTTA----T--AATACTCTT----GCACTGTTATATATGGTTT-CCTA-T---TTGTCCATTATAGTT-TC-AAACACTTAATTCCTA----TTTTTTTC-AAATT-TT-CCTACATTT-----TTTGTTGCCCAAAAG-TA-ACTTGACAGCCT
gi|10 : cTTTAAGTTTTCCCATACAAA-------------A----ACAGATCGTTT-ATTGT---CAGT------GT-----------A-AATTG-TTA---T-TTGATA-TT---GAAATAAAT--TTTAAATAATGGAGAG-----TG-ATGTGGT---TGG-CTC---TAAG--GG-G--AGG-TGGAGGTAAGTTTTTGTTT-A-AAA--AGTATGACCAATCATTCA-T-TTTAC--ATCTTATATCAA--G--T--
gi|11 : aATTCA-T-GTTAC--ATCTTGTATTAA--G--T--GATTGA---CCAATACCCAA--TG-TTTG----TTTAA-ACTCTT----GCA--GTTATATATG--TT-CCTATT---TT-TCCA-TATA-TT-TCAAAACA-TTAATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAGTTC-ACTTGACAGCCTg
gi|12 : CTTTTTGCCCTTTTGATATGGTTTCCCAATCT
gi|13 : ATTCCTA----TTTTTTTC-ACATT-TT-GCTATATTT-----GT--TTGCCCAAAAG-TC-ACTTGACAGCCTtgttaaaacacttaaggtagtatgaaacgttcgtc
gi|14 : GCTGTCA-GTCTACCT-ATATTTTC--TATTTT-CAGG-G-AGTTCCTTgg
gi|15 : atacacaCAGGCTGTCAAATCT-CCT-ATATTTTTC-T--------GG-G-AGTTCCTTTATTTTCCTA
gi|16 : AGGCTGTCAAGTGT-CCT-ATATTTTCC-TATTTTTCTGG-G-AGT
gi|2 : AGG-TGTCAAGTCT-CCT-ATATTTTCA-CATT---CAGGAG-AGTTCCTTTATTTTCCTATCATTGGGCCAAAATCCTCCTATATATTCCTATATTTTGGCAATAAAGGTGTCGTTTTCA-TTCTTTGATTT---------------------A-----AAAAAGATTG-----AAAGTCCGAAATCAAGTCTAAC-ATG-CATACTTACACTCAATTAGTAA---TTTA-ACACCATTTTAAGACCCCACCT--TATATTTTATACATTTATGAACAACCAATACCTGGTATCCGTAAACTTACAGCATACCGGCAATTATTAAAACATGAGTGAAAAAATAGCTTTT--CCCTTTTG-TATGTTCCCCCAATTTCA-ATTTTC----ACTCAAGGTTAAAAAACCAC-TTACAGATAGTTT-ATTGT---CAAT------GT-------------AATT--TTA---T-TTAATA-TGTGAAAAATAAAT--TCTCAATAATTGA-AG-----AA-ATGTGGTAATTGG-CTG---TAAG--GG-A--GT----GGGGCCAATTTTTGTT--A-AAGGTATTATGACTAATCA
gi|3 : AAGTCT-CCT-ATATTTTCA-TATTTTTTAAG-GTAGTTCTTTTATTTTCTTAT-ATATGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGC-------------TCTTTGATTTGATTG-TTC-ATAAATAATGCAAAATTAAAAAAAAAA-----AAAATC--AAACCAAGT-TAACTATGACA----TACA-TAATTTAG-AATTTTTTA-AAACCATTTTA-GACC--CCTT--TATATTTTATACATTCATAAAC--------------ATCAATGAACTTGCAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGTCCTTTTGATATGATTTCCCAATTTCAAGTTTTC----ACTCA-------------
gi|4 : gCTGGCAAGGTT-CCT-ATATTTTCCTTATTTTTCAGG-G-A-TTCCTTTATTTTCCTAC-ATTTTGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAG-TGTCGTTTTCAGTTCTTTGATTTGATTG-TTCAA-AAATAATGC---------GAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTGCA-T-ATTTAG-AAGTTTTTA-ACCCCA-TTTA-AACC--ACTT--TATA-TTTATACATTTATGAACAACCAATA-TTGGTATAAATGAA-TTACAACATG-CAGCAA-TATTAAAACATGAGTG-AAGAATAGCTTTTTGCCC-TTTGATATGGTTTCCCAATTTCAGGTTTTC----Atgttaaaacacttttataacagggattccatttactggc
gi|5 : GGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCTGG-G-AGTTCTTATATTTTCCTAT-ATTTGGGCAAATACCTCTAAT-T-TTCCTATATTTTGGCAATAACGCTGTCATTTTTAGTTTTTTGATTTG-TTGCTTC-ATAAATAATGCA-----AAAAAAAAAAAAAAAGAAGTC--AAA-CAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTACAACCCATTTTA-A-----------------TTACACATTTATGAACAACCAATA-TTGGTATCAATGAACTTCCAGCATG-CAGCAA-TATTAAAACATGAGTG--AAAATAACTTTTTGCCCTTTTGATATAGTTTACCAATTTCAGGTTTTC----ACTCtgttaaaacactttaaca
gi|6 : ATAGTTT-ATTGTGTCTAATACTCTCGT-----------AGAATTGATTAGCATGTTGATAATTTCCATAACTAATGATTTCAATAATGGAGAAGTC--CGGATGTGGT-GTTGGTCTGGTATAAGAGGG-ATGGTGGTGCAAAACA--TCTTGTTCCACAAG--GATATGACTAATCATTTATT-TTTACCTATCC----TTAA--GTTT--CTTTGACCTTCAATACT-AATCTGTTTTA----T--AATATCCTTTACAGCA--GTTATATATG--TT-CCTA-TTCGTT-TCC-TTATA-TTCTCAAAACA-TATATTCCTAATTGTTCTGTTCAAAATTATTGCCTATATTTGTGTCTT--TTGCACAAAAT-TCGACTT
gi|7 : cgaAGGCTGGCAAGGTT-CCTGATATTTCCT-TATTTTTCAGG-G-A-TTCCTTTATTTTCCTAC-ATTTTGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAG-TGTCGTTTTCAGTTCTTTGATTTGATTG-TTCAA-AAATAATGC---------GAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTGCA-TCATTTAG-AAGTTTTTA-ACCCCA-TTTA-AACC--ACTT--TATATTTTATACATTTATGAACAACCAATA--TGGTATAAATGAA-TTACAACATG-CAGCAA-TATTAAAACATGAGTG-AAGAATAGCTTTTTctgac
gi|8 : CATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTAAATATATTTCATACATTTATGAACAACTAATA-TTGGTATCAA--------CAACATG-CAGCAA-TATTAAAACATGAATG-AAAAATAGCTTTTTGCCCTATTGATATGGTTTCCCAGTTTCAGGTTTTC----ACTCA-------------ATGTTA-AAACACTTTAATTAA---CAGT------G
gi|9 : TTGTT--C-AAG--AGTATGACTAATCATTTA-T-TTCAC--AGCTTATATTAA--G--TGTATTTGA---TCAATACT-AA--TG-TTTAATTAT--AATACTCTT----GTACTGTTATATATG--GTACCCA-T---TT-TCCA-TATA-TT-TCAAAACA-TTAATTCCTA----TCGTTTTC-TAATT-TT-CCTATA-TT-----TT--TTGCCCAGAAG-TC-ACTTGATAGC
blockSeqs : A G CT T A T G C A G G A C ATAAATAATGCAAAATT AAAAA CG T C T C T C T AG CC AA T CC C C T A A CCAT A AGGTTAAAAAACCAC C A GTC ACTCTCGTAG GA GCATG A TGA GA A G GTCCGG AA T GTA AG ATGGTGG G CCAC GT T T CT GTTTC CCT C TC T ATTAT T TACA CT . A TTCG . A . C A . ATTG A A G GTGTC . T G
blockSeqs : . . C T . . G . . C G A . ATAAATAATGCA . . C . C . . . T G . . T T C . . . A . C ATG C . . GTA G T . TCC . C G TG G . . . GAGG A TA . . G . GTGTA . . . . TTT T . . . . TT . T . . A . . . . . . . . .
blockSeqs : . . C T . . G . . C G A . AAAAATAATGC . . T . C . . . T A . . T T C . . . G . C A . . . GT . T . . . C . AA . . . . AGT . A . . T . GTG . . . . T . . . . . T . A . . A . . . . . . . . .
blockSeqs : . . A T . . G . . . . . . AAAAATAATGC . . T . C . . . T A . . T T . . . . G . C . . C . . T . . . . . . . . .
blockSeqs : . . A T . . G . . . . . . A . . . . . . . . . A . . . . . . . . G . C
blockSeqs : . . C . . . G . . . . G . . . . . . . . . .
blockSeqs : . . T . . . .
blockSeqs : . . . . . . .
blockSeqCons : ATAAATAATGCA****** T* **
originalCons : NCAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTCGTTTTCAGTTCTTTGATTTGATTG-TTC-A-AAATAATGCA-----AAAAAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAATTTCAGGTTTTC----ACTCA-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GT-----------A-AATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTNAATAATGGAGAG-----CG-ATGTGGT-NTTGG-CTG---TAAG--GG-A--GTG-TGGAGGCCANTTTTTGTT--A-AAG--AGTATGACTAATCATTCA-T-TTTAC--ATCTTATATTAA--G--T--ATTTGA---TCAATACT-AA--TG-TTTA----T--AATACTCTT----GCACTGTTATATATG--TT-CCTA-T---TT-TCCATTATA-TT-TCAAAACA-TTAATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAG-TC-ACTTGACAGCCT
finalCons : NCAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTCGTTTTCAGTTCTTTGATTTGATTG-TTCATAAATAATGCA------AAAAAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAATTTCAGGTTTTC----ACTCA-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GT-----------A-AATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTNAATAATGGAGAG-----CG-ATGTGGT-NTTGG-CTG---TAAG--GG-A--GTG-TGGAGGCCANTTTTTGTT--A-AAG--AGTATGACTAATCATTCA-TT-TTAC--ATCTTATATTAA--G--T--ATTTGA---TCAATACT-AA--TG-TTTA----T--AATACTCTT----GCACTGTTATATATG--TT-CCTA-T---TT-TCCATTATA-TT-TCAAAACA-TTAATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAG-TC-ACTTGACAGCCT
Alignments
lowQualScore : 1 222222 11111 1 1111 5555555555555555 111 666666666666666666666 11 11111 1 333 11 44444444 22 1 222 11 22222222 1 2222 11 11 111111111 111 1 11 1 2222222 2222 11 11 1 11111 1 11 1 1 1 1111 22222 11
lowQualScore : 4 4 77 1 4 4 1 6 6 0 2 3 6 66 888888 66666 99 1 6 1 5 0 1 0 5 0 5 66 77 77 1 99 7 5 5 5 5 2222 2 1111111111111111 2 8 444 444444444444444444444 22 88888 0 000 33 1 2 66666666 00 0 777 33 22222222 0 0 2222 11 8 99 11 0 444444444 777 0 33 0 6666666 3 1111 88 33 0 88888 0 88 0 0 3 0 7777 8 8 8 0 00000 11 8 8
lowQualScore : . . .. . . . . . . . . . . .. ...... ..... .. . . . . . . . . . . .. .. .. . .. . . . . . .... . ................ . . ... ..................... .. ..... . ... .. . . ........ .. . ... .. ........ . . .... .. . .. .. . ......... ... . .. . ....... . .... .. .. . ..... . .. . . . . .... . . . . ..... .. . .
lowQualScore : 4 4 33 8 4 4 1 7 7 8 5 2 7 88 333333 77777 22 7 7 0 7 7 4 7 7 7 0 11 99 99 4 33 9 7 7 7 3 1111 5 5555555555555555 5 0 000 888888888888888888888 55 55555 0 888 88 0 5 88888888 88 0 555 88 00000000 2 8 8888 00 0 00 00 8 888888888 555 0 88 0 0000000 2 2222 00 88 0 55555 0 88 0 0 2 0 0000 0 0 0 8 00000 00 0 0
consensus : NCAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTCGTTTTCAGTTCTTTGATTTGATTG-TTCATAAATAATGCA-----AAAAAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAATTTCAGGTTTTC----ACTCA-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GT-----------A-AATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTNAATAATGGAGAG-----CG-ATGTGGT-NTTGG-CTG---TAAG--GG-A--GTG-TGGAGGCCANTTTTTGTT--A-AAG--AGTATGACTAATCATTCA-T-TTTAC--ATCTTATATTAA--G--T--ATTTGA---TCAATACT-AA--TG-TTTA----T--AATACTCTT----GCACTGTTATATATG--TT-CCTA-T---TT-TCCATTATA-TT-TCAAAACA-TTAATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAG-TC-ACTTGACAGCCT
Reference ( family-3992 ) : NCAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTCGTTTTCAGTTCTTTGATTTGATTG-TTCATAAATAATGCA-----AAAAAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATGGTTTCCCAATTTCAGGTTTTC----ACTCA-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GT-----------A-AATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTNAATAATGGAGAG-----CG-ATGTGGT-NTTGG-CTG---TAAG--GG-A--GTG-TGGAGGCCANTTTTTGTT--A-AAG--AGTATGACTAATCATTCA-T-TTTAC--ATCTTATATTAA--G--T--ATTTGA---TCAATACT-AA--TG-TTTA----T--AATACTCTT----GCACTGTTATATATG--TT-CCTA-T---TT-TCCATTATA-TT-TCAAAACA-TTAATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAG-TC-ACTTGACAGCCT
gi|1 : CAGGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCAGG-G-AGTTCCTTTATTTTCCTAT-ATTTGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGCTGTAGTTTTTAGTTCTTTGATTTGATTG-TTCAT-------GCT-----AAAAAA---------GAAGTC--AAATCAAGT-TAACCATGACATACTTACA-TCATTTAGTAAGTTTTTA-AACCTATTTTA-CACC--ACTT--TATATTTTATACATTTATGAACAACCAATA-TTGGTATCAATGAACTTACAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGCCCTTTTGATATTGTTTCCCAATTTCACGTTTTC----ACT-A-------------AC-TTACAGATAGTTT-ATTGT---CAAT------GTACAATGTACAGA-AATTG-TTA---T-TTGATA-TTT--AAAATAAAT--TTTAAATAATGGAGAGCGATACG-ATGTGGT-TTTGG-CTGC--TAAG--GGTA--GTG-TGGAGGCCATTTTTTGTT--A-AAG--AGTATGACTAATCATTCA-TAATTAC--ATCTTATATTAATGG--T--ATTTGA---TCAATACT-AA--TG-TTTA----T--AATACTCTT----GCACTGTTATATATGGTTT-CCTA-T---TTGTCCATTATAGTT-TC-AAACACTTAATTCCTA----TTTTTTTC-AAATT-TT-CCTACATTT-----TTTGTTGCCCAAAAG-TA-ACTTGACAGCCT
gi|10 : cTTTAAGTTTTCCCATACAAA-------------A----ACAGATCGTTT-ATTGT---CAGT------GT-----------A-AATTG-TTA---T-TTGATA-TT---GAAATAAAT--TTTAAATAATGGAGAG-----TG-ATGTGGT---TGG-CTC---TAAG--GG-G--AGG-TGGAGGTAAGTTTTTGTTT-A-AAA--AGTATGACCAATCATTCA-T-TTTAC--ATCTTATATCAA--G--T--
gi|11 : aATTCA-T-GTTAC--ATCTTGTATTAA--G--T--GATTGA---CCAATACCCAA--TG-TTTG----TTTAA-ACTCTT----GCA--GTTATATATG--TT-CCTATT---TT-TCCA-TATA-TT-TCAAAACA-TTAATTCCTA----TTTTTTTC-AAATT-TT-CCTATATTT-----TT--TTGCCCAAAAGTTC-ACTTGACAGCCTg
gi|12 : CTTTTTGCCCTTTTGATATGGTTTCCCAATCT
gi|13 : ATTCCTA----TTTTTTTC-ACATT-TT-GCTATATTT-----GT--TTGCCCAAAAG-TC-ACTTGACAGCCTtgttaaaacacttaaggtagtatgaaacgttcgtc
gi|14 : GCTGTCA-GTCTACCT-ATATTTTC--TATTTT-CAGG-G-AGTTCCTTgg
gi|15 : atacacaCAGGCTGTCAAATCT-CCT-ATATTTTTC-T--------GG-G-AGTTCCTTTATTTTCCTA
gi|16 : AGGCTGTCAAGTGT-CCT-ATATTTTCC-TATTTTTCTGG-G-AGT
gi|2 : AGG-TGTCAAGTCT-CCT-ATATTTTCA-CATT---CAGGAG-AGTTCCTTTATTTTCCTATCATTGGGCCAAAATCCTCCTATATATTCCTATATTTTGGCAATAAAGGTGTCGTTTTCA-TTCTTTGATTT--------------------A-----AAAAAGATTG-----AAAGTCCGAAATCAAGTCTAAC-ATG-CATACTTACACTCAATTAGTAA---TTTA-ACACCATTTTAAGACCCCACCT--TATATTTTATACATTTATGAACAACCAATACCTGGTATCCGTAAACTTACAGCATACCGGCAATTATTAAAACATGAGTGAAAAAATAGCTTTT--CCCTTTTG-TATGTTCCCCCAATTTCA-ATTTTC----ACTCAAGGTTAAAAAACCAC-TTACAGATAGTTT-ATTGT---CAAT------GT-------------AATT--TTA---T-TTAATA-TGTGAAAAATAAAT--TCTCAATAATTGA-AG-----AA-ATGTGGTAATTGG-CTG---TAAG--GG-A--GT----GGGGCCAATTTTTGTT--A-AAGGTATTATGACTAATCA
gi|3 : AAGTCT-CCT-ATATTTTCA-TATTTTTTAAG-GTAGTTCTTTTATTTTCTTAT-ATATGGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAGC-------------TCTTTGATTTGATTG-TTCATAAATAATGCAAAATTAAAAAAAAAA-----AAAATC--AAACCAAGT-TAACTATGACA----TACA-TAATTTAG-AATTTTTTA-AAACCATTTTA-GACC--CCTT--TATATTTTATACATTCATAAAC--------------ATCAATGAACTTGCAGCATG-CAGCAA-TATTAAAACATGAGTG-AAAAATAGCTTTTTGTCCTTTTGATATGATTTCCCAATTTCAAGTTTTC----ACTCA-------------
gi|4 : gCTGGCAAGGTT-CCT-ATATTTTCCTTATTTTTCAGG-G-A-TTCCTTTATTTTCCTAC-ATTTTGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAG-TGTCGTTTTCAGTTCTTTGATTTGATTG-TTCAAAAATAATGC---------GAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTGCA-T-ATTTAG-AAGTTTTTA-ACCCCA-TTTA-AACC--ACTT--TATA-TTTATACATTTATGAACAACCAATA-TTGGTATAAATGAA-TTACAACATG-CAGCAA-TATTAAAACATGAGTG-AAGAATAGCTTTTTGCCC-TTTGATATGGTTTCCCAATTTCAGGTTTTC----Atgttaaaacacttttataacagggattccatttactggc
gi|5 : GGCTGTCAAGTCT-CCT-ATATTTTCC-TATTTTTCTGG-G-AGTTCTTATATTTTCCTAT-ATTTGGGCAAATACCTCTAAT-T-TTCCTATATTTTGGCAATAACGCTGTCATTTTTAGTTTTTTGATTTG-TTGCTTCATAAATAATGCA-----AAAAAAAAAAAAAAAGAAGTC--AAA-CAAGT-TAACCATGACATACTTACA-TCATTTAG-AAGTTTTTACAACCCATTTTA-A-----------------TTACACATTTATGAACAACCAATA-TTGGTATCAATGAACTTCCAGCATG-CAGCAA-TATTAAAACATGAGTG--AAAATAACTTTTTGCCCTTTTGATATAGTTTACCAATTTCAGGTTTTC----ACTCtgttaaaacactttaaca
gi|6 : ATAGTTT-ATTGTGTCTAATACTCTCGT-----------AGAATTGATTAGCATGTTGATAATTTCCATAACTAATGATTTCAATAATGGAGAAGTC--CGGATGTGGT-GTTGGTCTGGTATAAGAGGG-ATGGTGGTGCAAAACA--TCTTGTTCCACAAG--GATATGACTAATCATTTATT-TTTACCTATCC----TTAA--GTTT--CTTTGACCTTCAATACT-AATCTGTTTTA----T--AATATCCTTTACAGCA--GTTATATATG--TT-CCTA-TTCGTT-TCC-TTATA-TTCTCAAAACA-TATATTCCTAATTGTTCTGTTCAAAATTATTGCCTATATTTGTGTCTT--TTGCACAAAAT-TCGACTT
gi|7 : cgaAGGCTGGCAAGGTT-CCTGATATTTCCT-TATTTTTCAGG-G-A-TTCCTTTATTTTCCTAC-ATTTTGGCAAAATCCTCCTATAT-TTCCTATATTTTGGCAATAAAG-TGTCGTTTTCAGTTCTTTGATTTGATTG-TTCAAAAATAATGC---------GAAAAAA-----GAAGTC--AAATCAAGT-TAACCATGACATACTTGCA-TCATTTAG-AAGTTTTTA-ACCCCA-TTTA-AACC--ACTT--TATATTTTATACATTTATGAACAACCAATA--TGGTATAAATGAA-TTACAACATG-CAGCAA-TATTAAAACATGAGTG-AAGAATAGCTTTTTctgac
gi|8 : CATACTTACA-TCATTTAG-AAGTTTTTA-ACCCCATTTTA-GACC--ACTAAATATATTTCATACATTTATGAACAACTAATA-TTGGTATCAA--------CAACATG-CAGCAA-TATTAAAACATGAATG-AAAAATAGCTTTTTGCCCTATTGATATGGTTTCCCAGTTTCAGGTTTTC----ACTCA-------------ATGTTA-AAACACTTTAATTAA---CAGT------G
gi|9 : TTGTT--C-AAG--AGTATGACTAATCATTTA-T-TTCAC--AGCTTATATTAA--G--TGTATTTGA---TCAATACT-AA--TG-TTTAATTAT--AATACTCTT----GTACTGTTATATATG--GTACCCA-T---TT-TCCA-TATA-TT-TCAAAACA-TTAATTCCTA----TCGTTTTC-TAATT-TT-CCTATA-TT-----TT--TTGCCCAGAAG-TC-ACTTGATAGC