lowQualScore : 1111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 3333333333 55555555555555 2222222222222 333 1 1111111 222222222 0000000000000000000000000000000000000000000000000000000000000 2222 1 22222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 33 1 11 222 22 2
lowQualScore : 3 2222222222 8 3 8 99999999999999 33 5 1111111111111 5 111 5 0 66 1111111 5 0 777777777 5 66 77 3333333333333333333333333333333333333333333333333333333333333 1 2222 6 5 66666 2 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 33 6 8 0 8 5 8 6 3 0 11 8 444 33 5 5 0 3 0 8 8
lowQualScore : . .......... . . . .............. .. . ............. . ... . . .. ....... . . ......... . .. .. ............................................................. . .... . . ..... . ............................................................................................................................. . . .. . . . . . . . . . .. . ... .. . . . . . . .
lowQualScore : 0 8888888888 0 2 0 44444444444444 11 4 6666666666666 0 444 0 0 99 0000000 0 1 000000000 0 99 99 6666666666666666666666666666666666666666666666666666666666666 0 7777 7 0 00000 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 88 0 0 8 8 0 0 0 2 8 00 0 000 44 6 6 0 0 8 0 0
consensus : NAGTTTGNGT---------ACGC-AGCA-AAAAAATT--GATCGA-CNGTAATCTTGACTTTATA-A-----TC----CGC-GGTAA-TT-T-T--CACTGA--A-T--AT-TTTTGCAGAAA-A-T-AT--AAATT-CT--AAA--C----C---A-T-ACAGTACAAGAN-TTCGCA-T-TAGT-GCA-CAGCC--A-ATTGTTTA-ATAACAGTCGTC--T-CGACTTTCTGTCACAGTCGCGGNCATTACNCA----CAGCAATACTCTTTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTAAAAAACGTCGAATGGTACAAGACTATGAAACTAATGGCTAATTATAGG-GAC-TTTTT-GCAACATTTG-AAGTAT-GGTAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCAT-GCTATC-AAAACACAGGTAAAGAGGGCTTCTTCGAGATCTAAAGAA-TGCC-GATACT
Reference ( gi|2 ) : CAGTTTGTGT---------ACGC-AGCA-AAAAAAT---GATCCA-CTGTAATCTTGACTTTATA-A-----TC----CGC-GGTAAATT-T-T--CACTAA--A-T--AT-TTTTGCAGAAA-A-T-AT--AAATT-CT--AAA--C----C---A-T-ACGGTACAAGAA-TTTGCA-TTTAGT-GCA-CAGCC--ATATAGTTTAGATAACAGTTGTC--T-TGACTTTCTGTCACAGTCACGGA-AT-ACGCACAGACAG-AGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGG-TAATTATAGG-GAC-TTTT--GCAACATTTG-AAGTATAGGTAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCCT-GCTATCAAAAACACAGGTAAAGATGGTTTCTTCGAGATCTAAAGAA-TGCC-GATACT
gi|4 : AGTTTGGGT---------------GTA-TAAAAATTTTGAGCAAGCTGTAGTCTTAACTTTATA-C-----TC----TCT-GGTA--TT-TAT--CACTGA--A-T--AT-TTTTGCAGAAATA-T--T--GAATT-CT--AAA--C------------AAAGTTCAAGA-----------TA-T-GCA---------------------AACAGTCGTC--T-CGACTTTCT---ACA-TTGCGGT-AT-ACCCA
gi|12 : gatgtaccgtaatttgtcaaatataatacacagctgagtattatgtgcacccccaactttgggcctcaaaactgtgggaaaaacgtAGTTTGTGTGTACATAATACGC-AGCA-AAAGAA----------------ATCTGGACTTAATA-A-----TTAATACGC-GGTAA-TT-T-T--CACTAA--AAT--AT-TTTTGCAGAAATA-T--T--AAATT-CT--A
gi|1 : agagagagacgtT---------ACGC-A-CA-AAAAA-T---GATTGAACGGTAATCTTGACTG-ATA-A-----AC----CGC-GGTAATTTCT-T--CACTAACAA-T--AT-TTTTGCAGAAA-A-T-ATT-AAATT-CT--AAAAAC----C---A-TTACA-TACAAGAA-TT-GCACTTTAGT--C--CAACC--ATATTGTTTACATAACAGTTGTC--TATGACTTTCTGTCACAGTCACGGACATTACGCA----CAGCAATACTCTTTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTAAAAAACGTCGAATGGTACAAGACTATGAAACTAATGGCTAATTATAGG-AAC-TTTTA-GCAGCA--TGAAAGT-TGGCTAGCAGCAAAATTACAA-TTGTAGATTCGGAGAGTTACCCTGGCTATCCAAAACAC----AACGAGGGCTTCGTCGAGATC-AATGAATTGCCAGATACT
gi|3 : T---------ACGC-AGCATAAAGAATT--GATCGA-CGGTAATCTTGACTTAATA-A-----TC----CGCAGGT-AATT-T-T--CACTAA--G-T--AT-TTTTG-AGAGA-ATT-ATTAAAATT-CTTAAAA--C----CAGTA-T-ACTATACAAGAATTTTGAA-T---GTGGCATCAGCCCAAAATTGTTTAGATAACAGTCCTCTTT-TGATTTTCCGTCtttatggctgtaatttatacaaaaacatcatacctcgaccaaatccgcacaccacactccccgagaccgtcatcaagagtgttgacaagcggcgtagctttgatcaggacacaggtaaaatttgagcgcggaaccttaaaattggcacttta
gi|10 : gaagagagagagagagaggagagggagaagagagagatggaaggggaagagagagagagatgaggaggcgttttaggtgttataaT---------ACGCCAG-A-AAAAAAT---A--CTA-CCGTACTCTTG-CTTTATA-A-----TC----CCC-GTTAA-TT-T-T--CACTGA--A-A--GT-TTTTGC--------T-A---AAATT-CT--ACA--C----A---T-T-ACTGCACAgaggatttacccacag
gi|13 : aagaaagagaggaacgcattatgtgtataaGTAATCTT-----TATC-C-----TT----TGC-GATA---T-T-TAGCCCTGA--T-T--AT-TTTTACA-AAA-A-TGAT--AAATT-CT--AAA--C------------AAAGTACCCAAT-TTCGCA-TACAGT-
gi|11 : TAATCTTAACTTTATACATGTACTT----TGC-GGT--ATT-TAT--CACCAA--G-TTAATATTTTGCAG-GA-A-T-AA--AAATT-CT--AAA--C----A---AGT-AC-GTACCCGAT-TTTGCA-catcttaaatctacgcaggtat
gi|14 : gaGC-GGCAT-TT-T-T--CACTGA--A-T--AT-TTCTGCAGAAA-T-A-AT--AAATTACT--CAA--CTTTGC---A-T-ACAGTcacggtcgtcttaaatttaacc
gi|5 : TGGCTAATTATAGG-GACTTTTT--GCAATAATTG-AAGCAT-GGTAG-AGTAAAAATACAAATTGTGAAT--AGAGAGTT-CCAT-GCTATC-AAAACACAGGTAAAGG-GGTTTCTTCGAGATCTAAAGAA-TGCC-GATACTcgtctaaaatttacgcaggt
gi|7 : aacagtcgacggtacaaatatgaaaccaaTGGCTAATTATAGG-GAC-TTTTT-GCAACATTTG-AAGTAATGGTAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTC-CC------AT-----------GTAAAGAGGGCTTCTTCGAGATCTAAATAA-TGCC-GATACTcatggctttaattgttctcaaaacatcatacctagacaattgcacaccacagtccccgcagacttctatcaagtt
gi|6 : ttgaaatttaaaaacagttgaatcgatggtacaaatatgaaactaaAATTATAGGCGAC-TTTTTGGCAACATTTG-AATTATAG-TAG-AGTAAAA---CAAGT---GAAT--AGAGAGTT-CCAA-GCTATTAAAA-CACAGGTAAAGCGGGCTTCTTCGAGATCTAAAAAA-TGCC-GATACT
gi|8 : gcaAACATTTG-AAGTAT--GCAG-AGTAAAAATACAAGTTGTGAAT--AGCGAGTT-CCAT-GCTTTC-AAAACACAGGTAAAGAGGGCTTCTTCAAGATCTAAAGAA-TGCC-AACAcatggctgtaattgttatcaaaacatcatacctcgacattcacacaccacagtccccgcagacgtcaatcaagtgtgactgacaagcggcg
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TTGAAGTATCATAATTTGCTGAATATAATACGCATTTGTATTCAATAAGCATCCCTCATTTTCAGCCTGAAAATTGGAGGGAAAAATTCCAGTAGCTAAACAGAATTTTTCAGTAACAGCCATGCATAACTTTACCTACT
Unaligned ( gi|15 ): AAGATTTTCGAACTGTCGTCTTGACTTTCTACATCGCTGTATTAGACCCAGGTATAATCATGTTAATTTCAGCAGA
Unaligned ( gi|16 ): TTTGACAGAGATAATAATTCCTAAACAAGTACCGGGTACCTGATTTTGCACACAATCGTCTTGAATTTACCCAG
Unaligned ( gi|17 ): GCAGAAATAATAAATTCTAAACAAAGTACCTGACTCTGCATATATATATAGTCGTCTTGAATTTATCCAGGT
Unaligned ( gi|18 ): CTGTATTTTGCAAAATATAATAGGCATTGGTATTCGATATGAAACCCCCTTTTTTGGGCCAGAAAATTGT
Unaligned ( gi|19 ): CGAGACAATCGCCTTGACTTTCTACATCGCGGTATTTACCCAGG
Unaligned ( gi|20 ): CGAAACAATCGCCTAGACTTTCTACATCGCGGTATACCCAGG
Alignments
lowQualScore : 33333333333 1111111111111 1111 333333333333 66666666666666666666666666666666 11 4444444 3333 1111 1 222 1 2 222222 222
lowQualScore : 1 6 1 6 44444444444 3 00 3 5555555555555 4 77 66 9999 4 66 8 444 6666 4 55 66 999999999999 3 1 5 6 9 44444444444444444444444444444444 77 00 2222222 7777 1 2222 5 2 111 0 3 0 444444 444 8 6 8 3 6 6 6 6 6 3 1 99 6 6 6 6 3 3 6 6
lowQualScore : . . . . ........... . .. . ............. . .. .. .... . .. . ... .... . .. .. ............ . . . . . ................................ .. .. ....... .... . .... . . ... . . . ...... ... . . . . . . . . . . . .. . . . . . . . .
lowQualScore : 0 7 0 7 55555555555 3 44 6 4444444444444 4 00 11 4444 4 11 1 222 0000 0 55 11 222222222222 9 6 7 6 9 44444444444444444444444444444444 99 77 7777777 9999 0 1111 0 0 000 3 0 0 222222 000 0 0 0 5 7 7 7 7 7 5 0 22 7 7 7 7 2 2 7 7
consensus : NAGTTTGNGTACGC-AGCA-AAAAAATT--GATCGA-CNGTAATCTTGACTTTATA-A-----TC----CGC-GGTAN-TTT--TCAC----T-GA--ATATTTTTGCAGAAAA-T-A-T--AAATT-CT--AAA--C----C---A-T-ACAGTACAAG-ANTTTGCA--TT-AGT-GCA-CAGCC---ATATTGTTTAGATAACAGTCGTC--T-TGACTTTCT---ACAGTCGCGGT-ATTACCCA----CAG-AATANTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTNAAAAACAGTCGAAC----GGTACAAAACTATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGT-AT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCAT-GCTAT-CAAAA-CACAGGTAAAGAGGGCTTCTTCGAGATCTAAAGAA-TGCC-GATACT
Reference ( family-3986 ) : NAGTTTGNGTACGC-AGCA-AAAAAATT--GATCGA-CNGTAATCTTGACTTTATA-A-----TC----CGC-GGTAA-TTT--TCAC----T-GA--ATATTTTTGCAGAAAA-T-A-T--AAATT-CT--AAA--C----C---A-T-ACAGTACAAG-ANTTCGCA--TT-AGT-GCA-CAGCC---A-ATTGTTTA-ATAACAGTCGTC--T-CGACTTTCTGTCACAGTCGCGGNCATTACNCA----CAGCAATACTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTAAAAAAC-GTCGAAT----GGTACAAGACTATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGT-AT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCAT-GCTAT-CAAAA-CACAGGTAAAGAGGGCTTCTTCGAGATCTAAAGAA-TGCC-GATACT
gi|1 : TACGC-A-CA-AAAAA--T--GATTGAACGGTAATCTTGACTG-ATA-A-----AC----CGC-GGTAA-TTTCTTCAC----T-AACAATATTTTTGCAGAAAA-T-A-TT-AAATT-CT--AAAAAC----C---A-TTACA-TACAAG-AATT-GCACTTT-AGT--C--CAACC---ATATTGTTTACATAACAGTTGTC--TATGACTTTCTGTCACAGTCACGGACATTACGCA----CAGCAATACTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTAAAAAAC-GTCGAAT----GGTACAAGACTATGAAACTAATGGCTAATTATAGG-AACTTTTAG-CAGCA--TGAAAGT--T-GGCTAGCAGCAAAATTACAA-TTGTAGATTCGGAGAGTTACCCTGGCTATCCAAAA-CAC----AACGAGGGCTTCGTCGAGATC-AATGAATTGCCAGATACT
gi|10 : TACGCCAG-A-AAAAAAT----A-CTA-CCGTACTCTTG-CTTTATA-A-----TC----CCC-GTTAA-TTT--TCAC----T-GA--AAGTTTTTGC-------T-A----AAATT-CT--ACA--C----A---T-T-ACTGCACAtttatggctgtaatttatacaaaaacatcatacctcgaccaaatccgcacaccacactccccgagaccgtcatcaagagtgttgacaagcggcgtagctttgatcaggacacaggtaaaatttgagcgcggaaccttaaaattggcacttta
gi|11 : aagaaagagaggaacgcattatgtgtataaTAATCTTAACTTTATACATGTACTT----TGC-GGTAT-TTA--TCACCAAGT-TA--ATA-TTTTGCAG-GAA-T-A-A--AAATT-CT--AAA--C----A---AGT-AC-GTACCCG-ATTTTGCA--
gi|12 : gaTACGC-AGCA-AAAGAA----------------ATCTGGACTTAATA-A-----TTAATACGC-GGTAA-TTT--TCAC----TAAA--ATATTTTTGCAG-AAA-T-ATT--AAATT-CT--Acacggtcgtcttaaatttaacc
gi|13 : agagagagacgtagtttgtgtgtacataaGTAATCTT-----TATC-C-----TT----TGC-GATAT-TTA--GCCC----T-GA--TTATTTTTACA-AAAA-TGA-T--AAATT-CT--AAA--C------------AAAGTACCCA-ATTTCGCA--T--------A-CAGTC---A-
gi|14 : GC-GGCAT-TTT--TCAC----T-GA--ATATTTCTGCAGAAAT-A-A-T--AAATTACT--CAA--CTTTGC---A-T-ACAGTtcttaaatctacgcaggtat
gi|15 : AACTGTCGTC--T-TGACTTTCT---ACA-TCGCTGT-ATTAGACC----CAGGTATAATCATGTTAATTTCAGCAGAcgtctaaaatttacgcaggt
gi|17 : aagattttcgGCAGAAAT-A-A-T--AAATT-CT--AAA--C------------AAAGTACCTG-ACTCTGCA--T
gi|19 : ACAATCGCC--T-TGACTTTCT---ACA-TCGCGGTATTTACCCA----atatatatagtcgtcttgaatttatccaggt
gi|2 : cgagAGTTTGTGTACGC-AGCA-AAAAAAT---GATCCA-CTGTAATCTTGACTTTATA-A-----TC----CGC-GGTAAATTT--TCAC----T-AA--ATATTTTTGCAGAAAA-T-A-T--AAATT-CT--AAA--C----C---A-T-ACGGTACAAG-AATTTGCA--TTTAGT-GCA-CAGCC---ATATAGTTTAGATAACAGTTGTC--T-TGACTTTCTGTCACAGTCACGG--AATACGCACAGACAG-AGNNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN----NNNNNNNNNNNNNNNNNNNNNTGG-TAATTATAGG-GACTTTT-G-CAACATTTG-AAGT-ATAGG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCCT-GCTAT-CAAAAACACAGGTAAAGATGGTTTCTTCGAGATCTAAAGAA-TGCC-GATACTgg
gi|20 : cAACAATCGCC--T-AGACTTTCT---ACA-TCGCGGT-A-TACCCA----
gi|3 : cgaTACGC-AGCATAAAGAATT--GATCGA-CGGTAATCTTGACTTAATA-A-----TC----CGCAGGTAA-TTT--TCAC----T-AA--GTATTTTTG-AGAGAATT-A-TTAAAATT-CTTAAAA--C----CAGTA-T-ACTATACAAGAATTTTGAA--T---GTGGCATCAGCCCAAA-ATTGTTTAGATAACAGTCCTCTTT-TGATTTTCC------GTCGAGGAT-TTACCCA----CAGgg
gi|4 : gaagagagagagagagaggagagggagaagagagagatggaaggggaagagagagagagatgaggaggcgttttaggtgttataaAGTTTGGGT------GTA-TAAAAATTTTGAGCAAGCTGTAGTCTTAACTTTATA-C-----TC----TCT-GGTAT-TTA--TCAC----T-GA--ATATTTTTGCAG-AAA-T-ATT--GAATT-CT--AAA--C------------AAAGTTCAAG-A----------T-A-T-GCA----------------------AACAGTCGTC--T-CGACTTTCT---ACA-TTGCGGT-A-TACCCA----
gi|5 : gatgtaccgtaatttgtcaaatataatacacagctgagtattatgtgcacccccaactttgggcctcaaaactgtgggaaaaacgtAACAGTCGA-C----GGTACAAA--TATGAAACCAATGGCTAATTATAGG-GACTTTTTG-CAATAATTG-AAGC-AT-GG-TAG-AGTAAAAATACAAATTGTGAAT--AGAGAGTT-CCAT-GCTAT-CAAAA-CACAGGTAAAG-GGGTTTCTTCGAGATCTAAAGAA-TGCC-GATACT
gi|6 : GCAAATTATAGGCGACTTTTTGGCAACATTTG-AATT-AT-AG-TAG-AGTAAAA---CAAGT---GAAT--AGAGAGTT-CCAA-GCTAT-TAAAA-CACAGGTAAAGCGGGCTTCTTCGAGATCTAAAAAA-TGCC-GATACTcatggctttaattgttctcaaaacatcatacctagacaattgcacaccacagtccccgcagacttctatcaagtt
gi|7 : TTG-AAATTTAAAAACAGTTGAATCGATGGTACAAA--TATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGTAAT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTC-CCAT------------------GTAAAGAGGGCTTCTTCGAGATCTAAATAA-TGCC-GATACTcatggctgtaattgttatcaaaacatcatacctcgacattcacacaccacagtccccgcagacgtcaatcaagtgtgactgacaagcggcg
gi|8 : AACATTTG-AAGT-AT-G--CAG-AGTAAAAATACAAGTTGTGAAT--AGCGAGTT-CCAT-GCTTT-CAAAA-CACAGGTAAAGAGGGCTTCTTCAAGATCTAAAGAA-TGCC-AACA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTGAAGTATCATAATTTGCTGAATATAATACGCATTTGTATTCAATAAGCATCCCTCATTTTCAGCCTGAAAATTGGAGGGAAAAATTCCAGTAGCTAAACAGAATTTTTCAGTAACAGCCATGCATAACTTTACCTACT
Unaligned ( gi|16 ): TTTGACAGAGATAATAATTCCTAAACAAGTACCGGGTACCTGATTTTGCACACAATCGTCTTGAATTTACCCAG
Unaligned ( gi|18 ): CTGTATTTTGCAAAATATAATAGGCATTGGTATTCGATATGAAACCCCCTTTTTTGGGCCAGAAAATTGT
Alignments
lowQualScore : 33333333333 1111111111111 1111 333333333333 6666666666666666666666666666666 1111111 11111111 11111 1 222 1 222222 22 111
lowQualScore : 1 6 1 6 44444444444 3 00 3 5555555555555 4 55 66 9999 66 4 4 7777 6666 4 55 66 999999999999 3 1 5 6 3 9999999999999999999999999999999 66 5 9999999 77777777 44444 0 1 111 0 1 5 777777 33 3 8 0 8 3 6 6 6 6 6 3 1 99 6 6 000 3 3 6 6
lowQualScore : . . . . ........... . .. . ............. . .. .. .... .. . . .... .... . .. .. ............ . . . . . ............................... .. . ....... ........ ..... . . ... . . . ...... .. . . . . . . . . . . . . .. . . ... . . . .
lowQualScore : 0 7 0 7 55555555555 3 44 6 4444444444444 4 44 11 4444 11 4 7 7777 0000 0 55 11 222222222222 9 6 7 6 6 4444444444444444444444444444444 99 0 8888888 66666666 66666 0 0 000 3 0 8 888888 22 2 0 8 0 5 7 7 7 7 7 5 0 22 7 7 222 2 2 7 7
consensus : NAGTTTGNGTACGC-AGCA-AAAAAATT--GATCGA-CNGTAATCTTGACTTTATA-----A-TC----CGC-GGTAN-TTT--TCAC----TGA--A-TATTTTTGCAGAAAA-T-A-T--AAATT-CT--AAA--C----C---A-T-ACAGTACAAG-ANTTTGCA--TT-AGT-GCA-CAGCC--ATATTGTTTAGATAACAGTCGTC--T-TGACTTTCT---ACAGTCGCGG-TA-TT--ACCCA----CAG-AATANTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTNAAAAACAGTCGAAC----GGTACAAAACTATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGT-AT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCAT-GCTAT-C-AAAACACAGGTAAAGAGGGCTTCTTCGAGATCTAAAGAA-TGCC-GATACT
Reference ( family-3986 ) : NAGTTTGNGTACGC-AGCA-AAAAAATT--GATCGA-CNGTAATCTTGACTTTATA-----A-TC----CGC-GGTAN-TTT--TCAC----TGA--A-TATTTTTGCAGAAAA-T-A-T--AAATT-CT--AAA--C----C---A-T-ACAGTACAAG-ANTTTGCA--TT-AGT-GCA-CAGCC--ATATTGTTTAGATAACAGTCGTC--T-TGACTTTCT---ACAGTCGCGG-TA-TT--ACCCA----CAG-AATANTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTNAAAAACAGTCGAAC----GGTACAAAACTATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGT-AT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCAT-GCTAT-C-AAAACACAGGTAAAGAGGGCTTCTTCGAGATCTAAAGAA-TGCC-GATACT
gi|1 : TACGC-A-CA-AAAAA--T--GATTGAACGGTAATCTTGACTG-ATA-----A-AC----CGC-GGTAA-TTTCTTCAC----TAACAA-TATTTTTGCAGAAAA-T-A-TT-AAATT-CT--AAAAAC----C---A-TTACA-TACAAG-AATT-GCACTTT-AGT--C--CAACC--ATATTGTTTACATAACAGTTGTC--TATGACTTTCTGTCACAGTCACGGACA-TT--ACGCA----CAGCAATACTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTAAAAAAC-GTCGAAT----GGTACAAGACTATGAAACTAATGGCTAATTATAGG-AACTTTTAG-CAGCA--TGAAAGT--T-GGCTAGCAGCAAAATTACAA-TTGTAGATTCGGAGAGTTACCCTGGCTATCC-AAAACAC----AACGAGGGCTTCGTCGAGATC-AATGAATTGCCAGATACT
gi|10 : TACGCCAG-A-AAAAAAT----A-CTA-CCGTACTCTTG-CTTTATA-----A-TC----CCC-GTTAA-TTT--TCAC----TGA--A-AGTTTTTGC-------T-A----AAATT-CT--ACA--C----A---T-T-ACTGCACAtttatggctgtaatttatacaaaaacatcatacctcgaccaaatccgcacaccacactccccgagaccgtcatcaagagtgttgacaagcggcgtagctttgatcaggacacaggtaaaatttgagcgcggaaccttaaaattggcacttta
gi|11 : aagaaagagaggaacgcattatgtgtataaTAATCTTAACTTTATACATGTACTT----TGC-GGTAT-TTA--TCACCAAGTTA--A-TATTTT-GCAGGAA--T-A-A--AAATT-CT--AAA--C----A---AGT-AC-GTACCCG-ATTTTGCA--
gi|12 : gaTACGC-AGCA-AAAGAA----------------ATCTGGACTTAATA-----A-TTAATACGC-GGTAA-TTT--TCAC----TAA--AATATTTTTGCAG-AAA-T-ATT--AAATT-CT--Acacggtcgtcttaaatttaacc
gi|13 : agagagagacgtagtttgtgtgtacataaGTAATCTT-----TATC-----C-TT----TGC-GATAT-TTA--GCCC----TGA--T-TATTTTTACA-AAAA-TGA-T--AAATT-CT--AAA--C------------AAAGTACCCA-ATTTCGCA--T--------A-CAGTC--ATCTT
gi|14 : GC-GGCAT-TTT--TCAC----TGA--A-TATTTCTGCAGAAAT-A-A-T--AAATTACT--CAA--CTTTGC---A-T-ACAGTaaatctacgcaggtat
gi|15 : AACTGTCGTC--T-TGACTTTCT---ACA-TCGCTG-TA-TTAGACCCA-----GG-TATAATCATGTTAATTTCAGCAGAcgtctaaaatttacgcaggt
gi|17 : aagattttcgGCAGAAAT-A-A-T--AAATT-CT--AAA--C------------AAAGTACCTG-ACTCTGCA--T-----------------ATAT-------AT-ATAGTCGTC--T-TGAATTTAT---CCAG
gi|19 : ACAATCGCC--T-TGACTTTCT---ACA-TCGCGG-TATTT--ACCCA----gt
gi|2 : cgagAGTTTGTGTACGC-AGCA-AAAAAAT---GATCCA-CTGTAATCTTGACTTTATA-----A-TC----CGC-GGTAAATTT--TCAC----TAA--A-TATTTTTGCAGAAAA-T-A-T--AAATT-CT--AAA--C----C---A-T-ACGGTACAAG-AATTTGCA--TTTAGT-GCA-CAGCC--ATATAGTTTAGATAACAGTTGTC--T-TGACTTTCTGTCACAGTCACGG-AA-T---ACGCACAGACAG-AGNNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNN-TGG-TAATTATAGG-GAC-TTTTG-CAACATTTG-AAGT-ATAGG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCCT-GCTAT-CAAAAACACAGGTAAAGATGGTTTCTTCGAGATCTAAAGAA-TGCC-GATACTgg
gi|20 : cAACAATCGCC--T-AGACTTTCT---ACA-TCGCGG-TA--T--ACCCA----
gi|3 : cgaTACGC-AGCATAAAGAATT--GATCGA-CGGTAATCTTGACTTAATA-----A-TC----CGCAGGTAA-TTT--TCAC----TAA--G-TATTTTTG-AGAGAATT-A-TTAAAATT-CTTAAAA--C----CAGTA-T-ACTATACAAGAATTTTGAA--T---GTGGCATCAGCCCAAAATTGTTTAGATAACAGTCCTCTTT-TGATTTTCC------GTCGAGG-AT-TT--ACCCA----CAG-gg
gi|4 : gaagagagagagagagaggagagggagaagagagagatggaaggggaagagagagagagatgaggaggcgttttaggtgttataaAGTTTGGGT------GTA-TAAAAATTTTGAGCAAGCTGTAGTCTTAACTTTATA-----C-TC----TCT-GGTAT-TTA--TCAC----TGA--A-TATTTTTGCAG-AAA-T-ATT--GAATT-CT--AAA--C------------AAAGTTCAAG-A----------T-A-T-GCA---------------------AACAGTCGTC--T-CGACTTTCT---ACA-TTGCGG-TA--T--ACCCA----
gi|5 : gatgtaccgtaatttgtcaaatataatacacagctgagtattatgtgcacccccaactttgggcctcaaaactgtgggaaaaacgtAACAGTCGA-C----GGTACAAA--TATGAAACCAATGGCTAATTATAGG-GACTTTTTG-CAATAATTG-AAGC-AT-GG-TAG-AGTAAAAATACAAATTGTGAAT--AGAGAGTT-CCAT-GCTAT-C-AAAACACAGGTAAAG-GGGTTTCTTCGAGATCTAAAGAA-TGCC-GATACT
gi|6 : GCAAATTATAGGCGACTTTTTGGCAACATTTG-AATT-AT-AG-TAG-AGTAAAA---CAAGT---GAAT--AGAGAGTT-CCAA-GCTAT-T-AAAACACAGGTAAAGCGGGCTTCTTCGAGATCTAAAAAA-TGCC-GATACTcatggctttaattgttctcaaaacatcatacctagacaattgcacaccacagtccccgcagacttctatcaagtt
gi|7 : TTG-AAATTTAAAAACAGTTGAATCGATGGTACAAA--TATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGTAAT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTC-CCAT------------------GTAAAGAGGGCTTCTTCGAGATCTAAATAA-TGCC-GATACTcatggctgtaattgttatcaaaacatcatacctcgacattcacacaccacagtccccgcagacgtcaatcaagtgtgactgacaagcggcg
gi|8 : AACATTTG-AAGT-AT-G--CAG-AGTAAAAATACAAGTTGTGAAT--AGCGAGTT-CCAT-GCTTT-C-AAAACACAGGTAAAGAGGGCTTCTTCAAGATCTAAAGAA-TGCC-AACA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTGAAGTATCATAATTTGCTGAATATAATACGCATTTGTATTCAATAAGCATCCCTCATTTTCAGCCTGAAAATTGGAGGGAAAAATTCCAGTAGCTAAACAGAATTTTTCAGTAACAGCCATGCATAACTTTACCTACT
Unaligned ( gi|16 ): TTTGACAGAGATAATAATTCCTAAACAAGTACCGGGTACCTGATTTTGCACACAATCGTCTTGAATTTACCCAG
Unaligned ( gi|18 ): CTGTATTTTGCAAAATATAATAGGCATTGGTATTCGATATGAAACCCCCTTTTTTGGGCCAGAAAATTGT
Alignments
lowQualScore : 33333333333 1111111111111 1111 333333333333 6666666666666666666666666666666 1111111 11111111 11111 1 222 1 222222 22 111
lowQualScore : 1 6 1 6 44444444444 3 00 3 5555555555555 4 55 66 9999 66 4 4 7777 6666 4 55 66 999999999999 3 1 5 6 3 9999999999999999999999999999999 66 5 9999999 77777777 44444 0 1 111 0 1 5 777777 33 3 8 0 8 3 6 6 6 6 6 3 1 99 6 6 000 3 3 6 6
lowQualScore : . . . . ........... . .. . ............. . .. .. .... .. . . .... .... . .. .. ............ . . . . . ............................... .. . ....... ........ ..... . . ... . . . ...... .. . . . . . . . . . . . . .. . . ... . . . .
lowQualScore : 0 7 0 7 55555555555 3 44 6 4444444444444 4 44 11 4444 11 4 7 7777 0000 0 55 11 222222222222 9 6 7 6 6 4444444444444444444444444444444 99 0 8888888 66666666 66666 0 0 000 3 0 8 888888 22 2 0 8 0 5 7 7 7 7 7 5 0 22 7 7 222 2 2 7 7
consensus : NAGTTTGNGTACGC-AGCA-AAAAAATT--GATCGA-CNGTAATCTTGACTTTATA-----A-TC----CGC-GGTAN-TTT--TCAC----TGA--A-TATTTTTGCAGAAAA-T-A-T--AAATT-CT--AAA--C----C---A-T-ACAGTACAAG-ANTTTGCA--TT-AGT-GCA-CAGCC--ATATTGTTTAGATAACAGTCGTC--T-TGACTTTCT---ACAGTCGCGG-TA-TT--ACCCA----CAG-AATANTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTNAAAAACAGTCGAAC----GGTACAAAACTATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGT-AT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCAT-GCTAT-C-AAAACACAGGTAAAGAGGGCTTCTTCGAGATCTAAAGAA-TGCC-GATACT
Reference ( family-3986 ) : NAGTTTGNGTACGC-AGCA-AAAAAATT--GATCGA-CNGTAATCTTGACTTTATA-----A-TC----CGC-GGTAN-TTT--TCAC----TGA--A-TATTTTTGCAGAAAA-T-A-T--AAATT-CT--AAA--C----C---A-T-ACAGTACAAG-ANTTTGCA--TT-AGT-GCA-CAGCC--ATATTGTTTAGATAACAGTCGTC--T-TGACTTTCT---ACAGTCGCGG-TA-TT--ACCCA----CAG-AATANTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTNAAAAACAGTCGAAC----GGTACAAAACTATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGT-AT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCAT-GCTAT-C-AAAACACAGGTAAAGAGGGCTTCTTCGAGATCTAAAGAA-TGCC-GATACT
gi|1 : TACGC-A-CA-AAAAA--T--GATTGAACGGTAATCTTGACTG-ATA-----A-AC----CGC-GGTAA-TTTCTTCAC----TAACAA-TATTTTTGCAGAAAA-T-A-TT-AAATT-CT--AAAAAC----C---A-TTACA-TACAAG-AATT-GCACTTT-AGT--C--CAACC--ATATTGTTTACATAACAGTTGTC--TATGACTTTCTGTCACAGTCACGGACA-TT--ACGCA----CAGCAATACTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTAAAAAAC-GTCGAAT----GGTACAAGACTATGAAACTAATGGCTAATTATAGG-AACTTTTAG-CAGCA--TGAAAGT--T-GGCTAGCAGCAAAATTACAA-TTGTAGATTCGGAGAGTTACCCTGGCTATCC-AAAACAC----AACGAGGGCTTCGTCGAGATC-AATGAATTGCCAGATACT
gi|10 : TACGCCAG-A-AAAAAAT----A-CTA-CCGTACTCTTG-CTTTATA-----A-TC----CCC-GTTAA-TTT--TCAC----TGA--A-AGTTTTTGC-------T-A----AAATT-CT--ACA--C----A---T-T-ACTGCACAtttatggctgtaatttatacaaaaacatcatacctcgaccaaatccgcacaccacactccccgagaccgtcatcaagagtgttgacaagcggcgtagctttgatcaggacacaggtaaaatttgagcgcggaaccttaaaattggcacttta
gi|11 : aagaaagagaggaacgcattatgtgtataaTAATCTTAACTTTATACATGTACTT----TGC-GGTAT-TTA--TCACCAAGTTA--A-TATTTT-GCAGGAA--T-A-A--AAATT-CT--AAA--C----A---AGT-AC-GTACCCG-ATTTTGCA--
gi|12 : gaTACGC-AGCA-AAAGAA----------------ATCTGGACTTAATA-----A-TTAATACGC-GGTAA-TTT--TCAC----TAA--AATATTTTTGCAG-AAA-T-ATT--AAATT-CT--Acacggtcgtcttaaatttaacc
gi|13 : agagagagacgtagtttgtgtgtacataaGTAATCTT-----TATC-----C-TT----TGC-GATAT-TTA--GCCC----TGA--T-TATTTTTACA-AAAA-TGA-T--AAATT-CT--AAA--C------------AAAGTACCCA-ATTTCGCA--T--------A-CAGTC--ATCTT
gi|14 : GC-GGCAT-TTT--TCAC----TGA--A-TATTTCTGCAGAAAT-A-A-T--AAATTACT--CAA--CTTTGC---A-T-ACAGTaaatctacgcaggtat
gi|15 : AACTGTCGTC--T-TGACTTTCT---ACA-TCGCTG-TA-TTAGACCCA-----GG-TATAATCATGTTAATTTCAGCAGAcgtctaaaatttacgcaggt
gi|17 : aagattttcgGCAGAAAT-A-A-T--AAATT-CT--AAA--C------------AAAGTACCTG-ACTCTGCA--T-----------------ATAT-------AT-ATAGTCGTC--T-TGAATTTAT---CCAG
gi|19 : ACAATCGCC--T-TGACTTTCT---ACA-TCGCGG-TATTT--ACCCA----gt
gi|2 : cgagAGTTTGTGTACGC-AGCA-AAAAAAT---GATCCA-CTGTAATCTTGACTTTATA-----A-TC----CGC-GGTAAATTT--TCAC----TAA--A-TATTTTTGCAGAAAA-T-A-T--AAATT-CT--AAA--C----C---A-T-ACGGTACAAG-AATTTGCA--TTTAGT-GCA-CAGCC--ATATAGTTTAGATAACAGTTGTC--T-TGACTTTCTGTCACAGTCACGG-AA-T---ACGCACAGACAG-AGNNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNN-TGG-TAATTATAGG-GAC-TTTTG-CAACATTTG-AAGT-ATAGG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCCT-GCTAT-CAAAAACACAGGTAAAGATGGTTTCTTCGAGATCTAAAGAA-TGCC-GATACTgg
gi|20 : cAACAATCGCC--T-AGACTTTCT---ACA-TCGCGG-TA--T--ACCCA----
gi|3 : cgaTACGC-AGCATAAAGAATT--GATCGA-CGGTAATCTTGACTTAATA-----A-TC----CGCAGGTAA-TTT--TCAC----TAA--G-TATTTTTG-AGAGAATT-A-TTAAAATT-CTTAAAA--C----CAGTA-T-ACTATACAAGAATTTTGAA--T---GTGGCATCAGCCCAAAATTGTTTAGATAACAGTCCTCTTT-TGATTTTCC------GTCGAGG-AT-TT--ACCCA----CAG-gg
gi|4 : gaagagagagagagagaggagagggagaagagagagatggaaggggaagagagagagagatgaggaggcgttttaggtgttataaAGTTTGGGT------GTA-TAAAAATTTTGAGCAAGCTGTAGTCTTAACTTTATA-----C-TC----TCT-GGTAT-TTA--TCAC----TGA--A-TATTTTTGCAG-AAA-T-ATT--GAATT-CT--AAA--C------------AAAGTTCAAG-A----------T-A-T-GCA---------------------AACAGTCGTC--T-CGACTTTCT---ACA-TTGCGG-TA--T--ACCCA----
gi|5 : gatgtaccgtaatttgtcaaatataatacacagctgagtattatgtgcacccccaactttgggcctcaaaactgtgggaaaaacgtAACAGTCGA-C----GGTACAAA--TATGAAACCAATGGCTAATTATAGG-GACTTTTTG-CAATAATTG-AAGC-AT-GG-TAG-AGTAAAAATACAAATTGTGAAT--AGAGAGTT-CCAT-GCTAT-C-AAAACACAGGTAAAG-GGGTTTCTTCGAGATCTAAAGAA-TGCC-GATACT
gi|6 : GCAAATTATAGGCGACTTTTTGGCAACATTTG-AATT-AT-AG-TAG-AGTAAAA---CAAGT---GAAT--AGAGAGTT-CCAA-GCTAT-T-AAAACACAGGTAAAGCGGGCTTCTTCGAGATCTAAAAAA-TGCC-GATACTcatggctttaattgttctcaaaacatcatacctagacaattgcacaccacagtccccgcagacttctatcaagtt
gi|7 : TTG-AAATTTAAAAACAGTTGAATCGATGGTACAAA--TATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGTAAT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTC-CCAT------------------GTAAAGAGGGCTTCTTCGAGATCTAAATAA-TGCC-GATACTcatggctgtaattgttatcaaaacatcatacctcgacattcacacaccacagtccccgcagacgtcaatcaagtgtgactgacaagcggcg
gi|8 : AACATTTG-AAGT-AT-G--CAG-AGTAAAAATACAAGTTGTGAAT--AGCGAGTT-CCAT-GCTTT-C-AAAACACAGGTAAAGAGGGCTTCTTCAAGATCTAAAGAA-TGCC-AACA
blockSeqs : G C C T TTTTGAGCAAG C T CATGTACTT A AA . CAAG . A G ATG TTA A TA . TTTGCAT T C A T T TGTGGCATCAGCCCAAAATTGTTTAG TT . GTCACAG TATTAG CAGAC . A ATG N N N ATCGAT NN A C G T . A A . . A G . . . CA A A . .
blockSeqs : . C . TTGATCGA T T ATTAATA . A . . . . A ATT TT . . . CAGTAT A C . T C TTTAGTGCACAGCCATATAGTTTAG . . CCAG TATTT C . N N . T A NN . A . . A . . . . . A A . . . C A C . .
blockSeqs : . C . TGATCCA G A ATC . T . . . . A AT TT . . . AAGT A T . C T TATGCA . . ACA ATTT . . A C . . . . T . . . . . A G . . . T A A . .
blockSeqs : . T . TACTA T T CTT . A . . . . A TA A . . . ATT A A . A T TATAT . . ACA AAT . . T . . . . . A G . . . C A A . .
blockSeqs : . . . . . T ATC . T . . . . A TA T . . . CAT G A . T T . . ACA TAT T . . . . . . G . . . . . . . .
blockSeqs : A ATC . T . . . . A AT T . . . . T A . . . . . ACA TAT
blockSeqs : T CTC . A . . . . . AT T . . . . A . . G
blockSeqs : . T . . . . . T T . . . . .
blockSeqs : . T . . .
blockSeqCons : TGACNA***** ** ** T*** ** AT********** TGCAAAT************************ ACA**** TAT***** ** C**
originalCons : NAGTTTGNGTACGC-AGCA-AAAAAATT--GATCGA-CNGTAATCTTGACTTTATA-----A-TC----CGC-GGTAN-TTT--TCAC----TGA--A-TATTTTTGCAGAAAA-T-A-T--AAATT-CT--AAA--C----C---A-T-ACAGTACAAG-ANTTTGCA--TT-AGT-GCA-CAGCC--ATATTGTTTAGATAACAGTCGTC--T-TGACTTTCT---ACAGTCGCGG-TA-TT--ACCCA----CAG-AATANTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTNAAAAACAGTCGAAC----GGTACAAAACTATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGT-AT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCAT-GCTAT-C-AAAACACAGGTAAAGAGGGCTTCTTCGAGATCTAAAGAA-TGCC-GATACT
finalCons : NAGTTTGNGTACGC-AGCA-AAAAAATGACNA-----CNGTAATCTTGACTTTATA-----A-TC----CGC-GGTAN-TTT--TCAC----TGA--A-TATTTTTGCAGAAAA-T-AT---AAATT-CT--AAA--CAT----------ACAGTACAAG-ANTTTGCATGCAAAT------------------------ATAACAGTCGTC--T-TGACTTTCTACA----TCGCGGTAT-----ACCCA----CAG-AATANTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTNAAAAACAGTCGAAC----GGTACAAAACTATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGT-AT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCAT-GCTATC--AAAACACAGGTAAAGAGGGCTTCTTCGAGATCTAAAGAA-TGCC-GATACT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTGAAGTATCATAATTTGCTGAATATAATACGCATTTGTATTCAATAAGCATCCCTCATTTTCAGCCTGAAAATTGGAGGGAAAAATTCCAGTAGCTAAACAGAATTTTTCAGTAACAGCCATGCATAACTTTACCTACT
Unaligned ( gi|16 ): TTTGACAGAGATAATAATTCCTAAACAAGTACCGGGTACCTGATTTTGCACACAATCGTCTTGAATTTACCCAG
Unaligned ( gi|18 ): CTGTATTTTGCAAAATATAATAGGCATTGGTATTCGATATGAAACCCCCTTTTTTGGGCCAGAAAATTGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 444444444444 1111111111111 1111 44444444444444444444 222222222 4444444444444444444444444444444444444444444444444444 111 1 1 111 11111 1 222 1 222222 22 111
lowQualScore : 1 6 1 6 666666666666 3 00 3 5555555555555 4 55 66 9999 4 66 3 6 5555 3333 3 55 00000000000000000000 55 1 000000000 8888888888888888888888888888888888888888888888888888 55 3 0 777 0 5 0 66 333 44444 0 1 111 0 1 5 777777 33 3 8 0 8 3 6 6 6 6 6 3 1 99 6 6 000 3 3 6 6
lowQualScore : . . . . ............ . .. . ............. . .. .. .... . .. . . .... .... . .. .................... .. . ......... .................................................... .. . . ... . . . .. ... ..... . . ... . . . ...... .. . . . . . . . . . . . . .. . . ... . . . .
lowQualScore : 0 7 0 7 888888888888 3 44 6 4444444444444 4 44 11 4444 4 11 6 5 6666 7777 6 00 88888888888888888888 22 0 111111111 0000000000000000000000000000000000000000000000000000 00 6 5 555 0 0 0 99 888 66666 0 0 000 3 0 8 888888 22 2 0 8 0 5 7 7 7 7 7 5 0 22 7 7 222 2 2 7 7
consensus : NAGTTTGNGTACGC-AGCA-AAAAAAT---GA-CN--A-CNGTAATCTTGACTTTATA-A-----TC----CGC-GGTAN-TTT--TCAC----T-GA--ATATTTTTG-CAGAAAA-T-A-T--AAATT-CT--AAA-----C----A--T-AC--AGTACANGANTTT--------GCA------T-----GC---A---------A-----------AT-------ATA-ACAGTCGTC--T-TGACTTTCT---ACA-TCGC-GG-TA--T---ACCCA----CAG-AATANTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTNAAAAACAGTCGAAC----GGTACAAAACTATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGT-AT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCAT-GCTAT-C-AAAACACAGGTAAAGAGGGCTTCTTCGAGATCTAAAGAA-TGCC-GATACT
Reference ( family-3986 ) : NAGTTTGNGTACGC-AGCA-AAAAAAT---GA-CN--A-CNGTAATCTTGACTTTATA-A-----TC----CGC-GGTAN-TTT--TCAC----T-GA--ATATTTTTG-CAGAAAA-T-A-T--AAATT-CT--AAA-----C----A--T-AC--AGTACAAGANTTT--------GCA------T-----GC---A---------A-----------AT-------ATA-ACAGTCGTC--T-TGACTTTCT---ACA-TCGC-GG-TA--T---ACCCA----CAG-AATANTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTNAAAAACAGTCGAAC----GGTACAAAACTATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGT-AT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCAT-GCTAT-C-AAAACACAGGTAAAGAGGGCTTCTTCGAGATCTAAAGAA-TGCC-GATACT
gi|1 : TACGC-A-CA-AAAAA-T---GA-TTGAA-CGGTAATCTTGACTG-ATA-A-----AC----CGC-GGTAA-TTTCTTCAC----T-AACAATATTTTTG-CAGAAAA-T-A-TT-AAATT-CT--AAAAAC--C----A--TTAC--A-TACAAGAATT---------GCACTTTAGT-----CC---A---------ACCATATTGTTTAC-------ATA-ACAGTTGTC--TATGACTTTCTGTCACAGTCAC-GGACA--TT--ACGCA----CAGCAATACTC-T-TTAATTTCAGCAGAGCACGATATTTTGCAGCAGGAAAAGCTGACTTCATAATTCTTGAAGTTTGCAAATTAAAAAAC-GTCGAAT----GGTACAAGACTATGAAACTAATGGCTAATTATAGG-AACTTTTAG-CAGCA--TGAAAGT--T-GGCTAGCAGCAAAATTACAA-TTGTAGATTCGGAGAGTTACCCTGGCTATCC-AAAACAC----AACGAGGGCTTCGTCGAGATC-AATGAATTGCCAGATACT
gi|10 : TACGCCAG-A-AAAAAAT----A-CT--A-CCGTACTCTTG-CTTTATA-A-----TC----CCC-GTTAA-TTT--TCAC----T-GA--AAGTTTTTG-C-------T-A----AAATT-CT--ACA-----C----AT-T-AC--TGCACAtttatggctgtaatttatacaaaaacatcatacctcgaccaaatccgcacaccacactccccgagaccgtcatcaagagtgttgacaagcggcgtagctttgatcaggacacaggtaaaatttgagcgcggaaccttaaaattggcacttta
gi|11 : aagaaagagaggaacgcattatgtgtataaTAATCTTAACTTTATACATGTACTT----TGC-GGTAT-TTA--TCACCAAGT-TA--ATA-TTTTG-CAG-GAA-T-A-A--AAATT-CT--AAA-----C----AAGT-AC---GTACCCGATTTT--------GCA------C---------------------------------------------ACGGTCGTC--T-TAAATTT
gi|12 : gaTACGC-AGCA-AAAGAA------------------ATCTGGACTTAATA-A-----TTAATACGC-GGTAA-TTT--TCAC----TAAA--ATATTTTTG-CAG-AAA-T-ATT--AAATT-CT--Aaacc
gi|13 : agagagagacgtagtttgtgtgtacataaGTAATCTT-----TATC-C-----TT----TGC-GATAT-TTA--GCCC----T-GA--TTATTTTTA-CA-AAAA-TGA-T--AAATT-CT--AAA-----C----A----A---AGTACCCAATTTC--------GCA------T---------------------------------------------ACAGTCATC--T-TAAA--TCT---A----CGCAGG-TA--T---
gi|14 : GC-GGCAT-TTT--TCAC----T-GA--ATATTTCTG-CAGAAAT-A-A-T--AAATTACT--CAACTTTGC----A--T-AC--AGT
gi|15 : A-ACTGTCGTC--T-TGACTTTCT---ACA-TCGC-TG-TA--TTAGACCCA-----GG-TATAATCATGTTAATTTCAGCAGAcgtctaaaatttacgcaggt
gi|16 : aagattttcgTTTGACAGAGAT-A-A-T--AATTC-CT--AAA-----C----AAGT-ACCGGGTACCTGATTTT--------GCA------C-----AC---A---------A----------------------------TCGTC--T-TGAATTT
gi|17 : G-CAGAAAT-A-A-T--AAATT-CT--AAA-----C----A----A---AGTACCTGACTCT--------GCA------T--------------------------------AT-------ATATATAGTCGTC--T-TGAATTTacccag
gi|19 : -ACAATCGCC--T-TGACTTTCT---ACA-TCGC-GG-TATTT---ACCCA----atccaggt
gi|2 : cgagAGTTTGTGTACGC-AGCA-AAAAAAT---GATCC--A-CTGTAATCTTGACTTTATA-A-----TC----CGC-GGTAAATTT--TCAC----T-AA--ATATTTTTG-CAGAAAA-T-A-T--AAATT-CT--AAA-----CC---A--T-AC--GGTACAAGAATTT--------GCA------TTTAGTGC---ACAGCCATATA-----------GTTTAG---ATA-ACAGTTGTC--T-TGACTTTCTGTCACAGTCAC-GG-AA--T---ACGCACAGACAG-AGNNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNN-TGG-TAATTATAGG-GAC-TTTTG-CAACATTTG-AAGT-ATAGG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTT-CCCT-GCTAT-CAAAAACACAGGTAAAGATGGTTTCTTCGAGATCTAAAGAA-TGCC-GATACTgg
gi|20 : cA-ACAATCGCC--T-AGACTTTCT---ACA-TCGC-GG-TA--T---ACCCA----
gi|3 : cgaTACGC-AGCATAAAGAATT--GATCG--A-CGGTAATCTTGACTTAATA-A-----TC----CGCAGGTAA-TTT--TCAC----T-AA--GTATTTTTG--AGAGAATT-A-TTAAAATT-CTTAAAA-----CCAGTA--T-AC--TATACAAGAATTTTGAATGTGGCA------TCA---GCCCAA---------A-----------ATTGTTTAGATA-ACAGTCCTCTTT-TGATTTTC-----CG-TCGA-GGATT--T---ACCCA----CAG-gg
gi|4 : gaagagagagagagagaggagagggagaagagagagatggaaggggaagagagagagagatgaggaggcgttttaggtgttataaAGTTTGGGT------GTA-TAAAAATTTTGAGCA--AGCTGTAGTCTTAACTTTATA-C-----TC----TCT-GGTAT-TTA--TCAC----T-GA--ATATTTTTG-CAG-AAA-T-ATT--GAATT-CT--AAA-----C----A----A---AGTTCAAGAT-------------A------T-----GC---A--------------------------------A-ACAGTCGTC--T-CGACTTTCT---ACA-TTGC-GG-TA--T---ACCCA----
gi|5 : gatgtaccgtaatttgtcaaatataatacacagctgagtattatgtgcacccccaactttgggcctcaaaactgtgggaaaaacgtAACAGTCGA-C----GGTACAAA--TATGAAACCAATGGCTAATTATAGG-GACTTTTTG-CAATAATTG-AAGC-AT-GG-TAG-AGTAAAAATACAAATTGTGAAT--AGAGAGTT-CCAT-GCTAT-C-AAAACACAGGTAAAG-GGGTTTCTTCGAGATCTAAAGAA-TGCC-GATACT
gi|6 : GCAAATTATAGGCGACTTTTTGGCAACATTTG-AATT-AT-AG-TAG-AGTAAAA---CAAGT---GAAT--AGAGAGTT-CCAA-GCTAT-T-AAAACACAGGTAAAGCGGGCTTCTTCGAGATCTAAAAAA-TGCC-GATACTcatggctttaattgttctcaaaacatcatacctagacaattgcacaccacagtccccgcagacttctatcaagtt
gi|7 : TTG-AAATTTAAAAACAGTTGAATCGATGGTACAAA--TATGAAACTAATGGCTAATTATAGG-GACTTTTTG-CAACATTTG-AAGTAAT-GG-TAG-AGTAAAAATACAAGTTGTGAAT--AGAGAGTC-CCAT------------------GTAAAGAGGGCTTCTTCGAGATCTAAATAA-TGCC-GATACTcatggctgtaattgttatcaaaacatcatacctcgacattcacacaccacagtccccgcagacgtcaatcaagtgtgactgacaagcggcg
gi|8 : AACATTTG-AAGT-AT-G--CAG-AGTAAAAATACAAGTTGTGAAT--AGCGAGTT-CCAT-GCTTT-C-AAAACACAGGTAAAGAGGGCTTCTTCAAGATCTAAAGAA-TGCC-AACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTGAAGTATCATAATTTGCTGAATATAATACGCATTTGTATTCAATAAGCATCCCTCATTTTCAGCCTGAAAATTGGAGGGAAAAATTCCAGTAGCTAAACAGAATTTTTCAGTAACAGCCATGCATAACTTTACCTACT
Unaligned ( gi|18 ): CTGTATTTTGCAAAATATAATAGGCATTGGTATTCGATATGAAACCCCCTTTTTTGGGCCAGAAAATTGT