lowQualScore : 1 1 11 222222222222 2 11111 222222 11111 22 55555555 1 1 1 1 1 222 11 2 2 2222 1 2 1 1 1 11 6666666666666 2 666666666666 1 1 1 111 1 2 22 22222 111 111111 333 2222222 2222222222222 33333333333 22222 11111 222222222222 111111111 111111 2222222222 1111111 222222222222 222222222222222222222 111111111111111 1 1
lowQualScore : 0 6 8 6 5 00 111111111111 0 6 4 5 66666 4 999999 66666 77 7 66666666 3 3 7 3 3 3 000 33 3 7 3 2222 3 3 3 3 6 3 88 8 7777777777777 6 7 888888888888 3 2 3 111 5 1 3 99 1 7 22 1 11111 77 000 2 8 666666 999 333 88 4 3 0000000 9 1 7777777777777 00000000000 0 5 55555 44444 44 333333333333 4 77 4 0 777777777 444444 777 3 3 0000000000 7777 3 8888888 1 3 3 0 2 555 000000000000 555 2 2 2 33 777777777777777777777 2 3 666666666666666 55 5555 666 2 8 0
lowQualScore : . . . . . .. ............ . . . . ..... . ...... ..... .. . ........ . . . . . . ... .. . . . .... . . . . . . .. . ............. . . ............ . . . ... . . . .. . . .. . ..... .. ... . . ...... ... ... .. . . ....... . . ............. ........... . . ..... ..... .. ............ . .. . . ......... ...... ... . . .......... .... . ....... . . . . . ... ............ ... . . . .. ..................... . . ............... .. .... ... . . .
lowQualScore : 7 7 3 7 0 77 888888888888 0 7 0 2 55555 0 555555 77777 55 3 00000000 3 3 3 3 3 3 555 88 7 3 3 7777 3 3 3 3 7 3 33 3 7777777777777 7 3 333333333333 3 3 3 666 5 3 7 22 7 3 88 0 77777 99 000 5 9 888888 222 777 11 4 6 4444444 4 8 4444444444444 66666666666 4 0 88888 99999 88 999999999999 4 44 4 1 777777777 000000 000 3 3 6666666666 1111 3 0000000 9 1 1 7 9 000 000000000000 000 9 9 9 99 111111111111111111111 9 2 333333333333333 55 7777 777 7 1 9
consensus : GGTAAAGCTACACAATATTTT-ATCAAATTGAT-ATGATANAT----AN-CGNAATGAAATTTT-CANTGACTTTCGTGAAATATTTTNAA-NT--AGTCAANAGTCAATGACACTAAAN----AGATCAAAAAAGGTCAACAAA---AT---CAATG-ACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCGAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGC-GACA--A-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-CGCGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTTAAA----------A--AATGTAGATTCGACACGACTTCAAAATATATAATCGAACAAAATCTAAAATAAAGAATAAAAT------------GAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGNAAATATATTGTACTAGACC-AAAT--GCTGTGAAATTTAATGAAA-ATTATGTCGACTAGTAATACA-GTATTAAA--AAA---CTTAAGAAA-CTGT-G----TAT-C-TTTATTTT--AAAATG-TAT-GANAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGTA-----------CATTT-TATGT-T---ATAT---T-CATGTATA-----------TATGTT-ATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT-------T--AT----T-TGTACT------TATAAATGCA-AT-TCT-T---A-TT---------T---T-G-TA-CCTC--A---------------------T-GTACCAACTTA---A-----TT----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
Reference ( gi|4 ) : GGTAAAACTACACAATATTTT-ATCAAATTATT-ATCATCTAT----AT-CGAAATGAA-TTTT-CATTGATTTTCGTGAAATATTTTGAA-AT--AGTCAAAAGTCAATGACACTAAAC----AGA--AAAAAAGGTCAACAAA---A----CAATG-ACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGCCGACA--A-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATAAAGAATAAAAT------------GAAACACTACTCTGCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATTATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAGAAA-CTGT-G----TAT-T-TTTATTTTTTAAAATG-TAT-GAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGTA-----------CATTT-TATGT-T---ATAT---T-CATGTATA-----------TATGTT-ATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT-------T--AT----T-TGTACT------CATAAATGCA-AT-TCT-T---A-TT---------T---T-G-TA-CCTC--A---------------------T-GTACCAACTTA---G-----TT----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|3 : GGTAAAACTACACAATATTTT-ATCAAATTATT-ATCATCTAT----AT-CGAAATGAA-TTTT-CATTGATTTTCGTGAAATATTTTGAA-AT--AGTCAAAAGTCAATGACACTAAAC----AGA--AAAAAAGGTCAACAAA---A----CAATG-ACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGCCGACA--A-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATAAAGAATAAAAT------------GAAACACTACTCTTCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATTATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAGAAA-CTGT-G----TAT-T-TTTATTTTTTAAAATG-TAT-GAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGTA-----------CATTT-TATGT-T---ATAT---A-CATGTATA-----------TATGTT-ATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT-------T--AT----T-TGTACT------CATAAATGCA-AT-TCT-T---A-TT---------T---T-G-TA-CCTC--A---------------------T-GTACCAACTTA---G-----TT----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|2 : GGTAAACATACACAATATTTT-ATCAAATTATTTAT-ATCTAT----AT-CGAAATGAC-TTTT-CATTGATTTTCGTGAAAT-TTTTGAA-AT--AGTCAAAAGGCAATGACACTAAAC----AGA--AAAAAAGGTCA-CAAA---AT---CAATG-ACGAGG-AGTTCAATTACCACATTTTTT-TAGCAAAATAATTATTATTCAGCC-GCAGTTTAGATTGAAC-ACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGC-GACACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-TGTGAACTATTTTTAATATTTTTTGAGGACGAACATCTCAAATTTCTATATCACTTGTAAAACGTACTAAAATCTACCTCCTTGAATATGTTAAAATTGATAATTTTTAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATAAAGAAT-AAAT------------GAAACACTACTCTGCGATAAAT-CCTAAACTTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTG-AATTTAATG-AAAATTATGTCGACTAATAATACAAGTATTAAA--AAA---CTTAAGAAA-CTGT-G----TAT-T-TTTA-TTTTTAAAATG-TAT-GAAAA----A-ATCGGCT-TCTTTAATACAAAA-TAACT--TT---TCTATTGTA-----------CATTT-TATGT-T---ATATA--T-CATGTATA-----------TATGTT-ATTAGTTTTA-TTTGACTACA-T------ACAT-T----ACT---CTTCTG-AC-GT-------T--AT----T-TGTACT------CATAAATGCA-AT-TCT-T---A-TT---------T---T-G-TA-CCTC--AT--------------------T-GTACCAACTTA---G-----TT----G-GG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|1 : GGTAAG-CTACACATTATCC--ATCAAATCAAT-ATGATATATTAATAT-C-AGATGAA-ATTTACATTGATTTTCGTGAAATATTTTTTA-ATCTAGTCAAAAGTCAATGACACTAAACCAAAAGG--AAAAAAAGTCAACAAATTCATTTTCAATGGACGAGGGAGTTCA-TTACCC-ACTTTTTGTTGCGAAATAATCATTATTCAGACCGCAGTTTAGATTGA--CACATTAAAAAGAAAAAGATGAACTATGGTTGGTTA-CATT-GAATTAAAGTCTGTGC-GACA--AAGCGTATGAAACCACGTCCAAAAATAGATCATTTGAGTTGGGGCGTTACAAA-CACGAACTAATTA-GATATTTTT-GAGGCCGAA----TCAGATTTCTATATCAAT-GTAAAACTTACTGAAATGTACCTCCTGAAATGTGT--GAACTGATATTTTTTGAATTTCTTTTATATCAATATAGATTCGACACGACTTAAAAATATATAATCGAATAAAATCTAAAATAAAGAATAAAATAAAGAATAAAATGAAACACTACTCTGCGATAAATTCCTAAA-CTTGGTGTTACAGTAAACATACAGGACTTTGAGAGCGATTCCCGTTGTAGTTATTCTACATTTATCTACTATAAAAAAAAATAATACCTTCA-----AA-ATATTGTACTAGACC-AAAT--ACTGTGAAATTTAATGAAA--TTATGTCGACTAGTAATACATGTATTAAA--AAA---CTTAAGAAA-CTGT-G----TAT-C-TTTATTTA--AAAAAGATAT-GAAAA----A-GTCTGTTCTCCTTAATACAAAA-TTACT--TT---TCTGTTGTA-----------CATTT-TATGT-----ATAT---TTCATCTATA-----------TATTTC-ATTAGTTTTA-TTTGCATA--------------------------CCTCTG-AC-GTTATTAA-T--AT----T-TGTACT------TAAAAATGTA-AC-TCT-T---A-TT---------T---T-G-TA-CCTC--A---------------------T-GTACCAACTTA---A-----TT----GTGG-CTTGA----GA--GAA-TAAATTatt
gi|15 : AAAGCTACACAATTATTT-ATCAAATTGAT-ATGATAAAT----AG-CGCA-TGAAATTTT-CAATGACTTTCGTGAAATATTTTTAATCT--AGTCAATAGTCAA--A---TAAAA----AGATCAAAAAga
gi|13 : ggAAAGCTACACATTATTTTTATCAAATTGAT-ATGATAAAT----AGGCGCA-TGAAATTTT-CAATGACTTTCGTGAAATATTTTAAT-CT--AGTCAATAGTCAA--A---TAAAA----AGATCAAAAAtcattatcaattgacg
gi|14 : ggAAGCTACACAATTATTT-ATCAAATTGAT-ATGATAAAT----AGGCGCA-TGAAATTTT-CAATGACTTTCGTGAAATATTTTTAATCT--AGTCAATAGTCAA--A---TAAAA----AGATCAAAAAtcattatcaattgacg
gi|27 : gggCAATTTATATTGA--CACATTCAA--GAAAAAGATGAACTATGGTTGGTtcattatcaattgacg
gi|11 : TTTACCTGATATAAGAAAA--GAATAC-TTAAGCGCTGA-ATATTGTACTAGACC-AAAT--GTAATGGAA-TTAATG--ACATTATGTCAAC---CAATAC---TGCTAAA--ATC---TTTAA-AAA-CTTT-G----CATGT-TTTATTCT---AAAGG-TAT-GTGAATT--A-ATCTGTCCTCCTTAGCATAAAA-
gi|5 : AAAAAA--GAATACCTTCAGCAGAA---TATTGTACTAGACC-AAGT--ACTGTGAAATTTAATGAAAT-TTATGTGTACTAGTAATA------TTACA--AAA---CTTAAGAAAACTGT-G----TAT-CCTTTATTTCA-AAAATA-TATTGAAAATTATA-GTCTGTTTTCTTT----------T--TC--TA---TTAATTGTAAA---------CATTT-TATGT-----ATAT---T-CATG-ATA-----------TATTTTTATTTATTTCA-TTTGCATACC-T------ACATATTATGACT---CTTCTG-AC-GT-------T--AT----T-TGTACT------AATAAATGTA-AC-TTT-TTGTA-TTGTACCTCGATCAAT-G-TA-CCTC--AAATATGTTTCAATGTGTCTATC-GTACCAAATTA---G-----TTCAAAGTGG-TTTGA----GA--GAA-TAAA-TTGAATTG-AActtcacat
gi|6 : CAGCGCAAATAT--TGTACAAGACC-AAATTTATTATGAAATTTAATGAAC--TTATGTCCACTTGTAATAC-----CCAAACCAAC---TTTAAGAAAACTGTTG----TAT-C-TTTATTTTC-AAAATA-TAT-AACCA----CTGTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTCCG-----------TATTTACACAT-TGCAATAT---T-TATGTATGTATAGATATACTATATT-ATTGATTTTACTTTGC-TACCTT------ACACTT----CCT---CCTCTGTCC-GTGGATACCT--AT----TATGT--T--------TAACTAC---T-TTC-C---A-TC---------C---T-G-TA-CCTCCGA---------------------T-GTACCAACTTC---GCATATCT----GTGGTTTTGA----GCT-GAACTAAATTGAAATTG-AACTaattgagatt
gi|9 : TAAA--AAAAGTCTTAA-AAA-CTGT-AGGCCTAT-G-TTTATTTTGAAAAAT--TAT-GATAC----T-GTCTGTCCTCCTTGAT----------TC--CTAGATTTACTGTA-----------CAT-------T-T---ACAT---T-T--------------------TGTC-GT--GTCTT--TTT--ATACA-C------ATTTGT----ATTGTGCCTCTG-AC----------T--AG----T-TTTATTAATTAATATACATGTACATATGT-T---A-CTA--------T---T-G-TA-CCTC--T---------------------T-GTACAAA--TA---------------ATGG-TTTGA----GG--GAA-TAAACTCAAAT
gi|10 : atatattgtgtgaAAGAAA-ATAT--------T-T-TTTATTTT----------------AA----A-GT--GTTCTTTTAAATACA----TAAG----------TATTA-A-----------CAATT-TTTGG-T---ATATGCTT-CATAAATA------------ATGAT-ATTG--TTCA-TTTCCATACT-T------ATGTAA----ATT---CCTCTG-AT-GT-------T--AC----G-TATATC------TATACATGAA-AC-TTC-T---G-CA---------T---T-G-TA-CCTC--A---------------------T-GTTCCACTTTC---A-----CC----GTGG-TTTGA----GC--GAA-TAAA-ATGAAT
gi|8 : aatataataaaacttgatatgtcaatcagaaataaAA-CTGT------TAT-C-TTTATCT---AAAATA-TAT-AACAC----T-GTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTGTATTTACACTTGGCATAT-TATGTATTGGATAG---C-CATTTATA-----------TATATT-ATGA--TTTA-CTTGCATAC--T------ACATTC----ACT---CCT-TG-TC-GT-------TGGATACCAT-TATTGT------TTTAACTA-G-AT-T-T-T---A------------T---T-GCTA-CCTC--A---------------------TCGTACC-ACTTGCATA-----TT----GTGG-TTTGA----GT--GAA--AAA-TTGAATTG-AATT
gi|12 : GTT-CTTTGTTTTC-TTTACATACA-TGTACCTACATAC----ACT---CTTCTG-AT-GT-------T--AT----T-TGTACT------TATAAATGTA-AC-ATT-T---G-AA---------T---T-G-TG-TCTC--A---------------------T-ATACCAATATG---A-----TT----GTGG-TTTGA----GA--GAA-TGAA-TTGAATTG-AATTGtg
gi|20 : g-T------ACATAC----ACT---CTTCTG-AC-GT-------C--AT----T-TGTATT------TATAAATGTA-AC-TCT-T---A-TT---------G---T-G-TG-CCTC--A---------------------T-GT--------------------------GG-TTTGA----GA--GAA-TAAA-TTGAACTGAAATTGaa
gi|19 : ccTCTG-AC-GT-------T--AC----T-TGTACT------AAAAAATGCA-AT-TCT-T---A-TT---------T---TTG-TA-CCTC--A---------------------T-GTACCAACTTA---A-----TT----GTGG-TTTGA----GT--GAA-TAAA-TTGAATTGAAATTGaa
gi|18 : aCTG-ACCGT-------TT-AC----T-TGTACT------AAAAAATGCA-AT-TCT-T---ATTT---------T---T-G-TACCCTC--A---------------------T-GTACCAACTTA---A-----TT----GT-G-TTTGA----GT--GAA--AAA--TGAATTGAAATTGa
gi|25 : AAATACA-AT-TCTAT---A-TTCTA------T---T-G-CA-CCGC--G---------------------T-GTACCAA--TA---A-----T-------GG-TTTGA----GA--GAA-TAAATTaggtt
gi|24 : -T---A-TA---------C---T-G-TG-CCTC--A---------------------T-GTACCGCTTTC---A-----TT----GTGG-TTTGAGTTTGAGCGAA-TAAA-ATGAA-TG-AAGTGa
gi|7 : AACTTA---A-----TT----GTGG-TTTGA----GA---AA-TAAATT-GAATTG-
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): CGCCCCTTTCCTATTATCAGATGATGTCGAGCAATTTCTTTTTTTTGTTGATAAAAACTGCAAATTACGATATATTAGTTCTGAAAAATGGTGCAAGGAAAGAATAA
Unaligned ( gi|17 ): CTTCACCTACATGTATTCTCAGCTGATATTGTGCTTTTTTTTTTCGTCGATAAAAATGGCAAATTGCGATATATTAGTTCTGAAAATGGTGAAAGTCAAGAATAAA
Unaligned ( gi|21 ): GTTTATTTTCATACCTAAATACATTCTTTTATTAATGCATGGAATTTCGTATTCCATTTCATTGTGATTTGAGCAAATAAAATGTGTG
Unaligned ( gi|22 ): CATTACCAGCTGATGTTGAGCATGTTTTTTCGTGGAGAAAAATGACGATATATGTGGTAAAAGTAAAGAATAAA
Unaligned ( gi|23 ): TTCTCAGCTGATATTGAGCAATTTTTTTCGTCGATAAAAATGACAAATTGCTTAAAATGTCAAGAATGAAC
Unaligned ( gi|26 ): ACCTATTTTCAGCTTTGATATTGAGCATTATTTTCGTCGATAAAAA
Alignments
lowQualScore : 1111111 11 1 111 111111 11 111 3333333333333 1 1 1 1 1 1 11 2 2 1111 1 22 1 1 1 11 4444444444444 1 555555555555 1 1 1 11 222 111111 22 111111 11111111 22222222222 111 111 22222222222 111111111 111111 111111 11111 1 1
lowQualScore : 5 4 77 4 22 5555555 33 2 1 66 888 1 777777 888 99 555 6666666666666 7 5 0 3 0 0 2 0 0 11 0 3 0 4444 0 22 2 0 0 2 0 33 4 8888888888888 2 5 111111111111 3 0 6 0 99 55 8 7 77 0 99 888 4 00 0 666 0 66 777 55 4 444444 88 4 44 4 4 2 999999 0 0 66666666 777 66 11111111111 4 99 555 4 222 22 11111111111 4 44 4 444444444 111111 666 3 3 444444 77 6666 3 9999999 1 2 2 2 2 888888 2 2 2 00000 2 2 2 8888888 555555 2 5555 55 2 9 0
lowQualScore : . . .. . .. ....... .. . . .. ... . ...... ... .. ... ............. . . . . . . . . . .. . . . .... . .. . . . . . .. . ............. . . ............ . . . . .. .. . . .. . .. ... . .. . ... . .. ... .. . ...... .. . .. . . . ...... . . ........ ... .. ........... . .. ... . ... .. ........... . .. . ......... ...... ... . . ...... .. .... . ....... . . . . . ...... . . . ..... . . . ....... ...... . .... .. . . .
lowQualScore : 7 0 99 3 33 6666666 00 0 0 77 111 0 111111 999 77 777 6666666666666 1 7 0 2 0 0 0 0 6 00 0 2 0 8888 0 00 0 0 0 5 0 88 0 5555555555555 0 5 222222222222 2 0 5 0 22 77 4 1 99 1 55 888 5 44 1 222 1 11 888 66 0 111111 55 0 55 0 0 4 000000 6 8 77777777 888 11 11111111111 4 00 666 4 222 11 11111111111 4 88 0 333333333 111111 444 1 1 222222 33 5555 1 3333333 1 9 9 9 7 555555 7 7 7 33333 7 5 4 6666666 888888 5 3333 99 5 5 0
consensus : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTG-ACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGCCGACA--A-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAA-TT---ATGTCGACTAGTAATAC-A-GTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA-TTTT--AAAATG-TA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
Reference ( family-3950 ) : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-NCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAN--AGATCAAAAAAGGTCAACAAA---AT---CAA-TG-ACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCGAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGC-GACA--A-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-CGCGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTTAAA----------A--AATGTAGATTCGACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGNAAATATATTGTACTAGACC-AAAT--GCTGTGAAATTTAATGAAAA-TT---ATGTCGACTAGTAATAC-A-GTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA-TTTT--AAAATG-TA-TGANAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|1 : GGTAA-GCTACACATTATCC--ATCAAATCAAT--ATGATATATTAATA-TCAGA-TGAAATTTACATTGATTTTCGTGAAATATTTTTTAA-TCTAGTCAAAAGTCAATGACACTAAACCAAAAGGAAAAAAAGTCAACAAATTCATTTTCAA-TGGACGAGGGAGTTCA-TTACCC-ACTTTTTGTTGCGAAATAATCATTATTCAGACCGCAGTTTAGATTGA--CACATTAAAAAGAAAAAGATGAACTATGGTTGGTTA-CATT-GAATTAAAGTCTGTGC-GACA--AAGCGTATGAAACCACGTCCAAAAATAGATCATTTGAGTTGGGGCGTTACAAA-CACGAACTAATTA-GATATTTTT-GAGGCCGAA----TCAGATTTCTATATCAAT-GTAAAACTTACTGAAATGTACCTCCTGAAATGTGT--GAACTGATATTTTTTGAATTTCTTTTATATCAATATAGATTCGACACGACTTAAAAATATATAATCGAATAAAATCTAAAATAAAGAATAAAATAAAGAATAAAATGAAACACTACTCTGCGATAAATTCCTAAAC-TTGGTGTTACAGTAAACATACAGGACTTTGAGAGCGATTCCCGTTGTAGTTATTCTACATTTATCTACTATAAAAAAAAATAATACCTTCA-----AA-ATATTGTACTAGACC-AAAT--ACTGTGAAATTTAATGAAA--TT---ATGTCGACTAGTAATAC-ATGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA-TTTA--AAAAAGATA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TTACT--TT---TCTGTTGT--A-----------CATTT-TATG--T---ATATT---TCATCTATA-----------TA-TTTCATTAGTTTTA-TTTGCATA--------------------------CCTCTG-AC-GTTATTAAT--AT----TTG-TACT------TAAAAATGTA-A-C-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-CTTGA----GA--GAA-TAAATT
gi|10 : AATATAATAAAAC-TTGATATGTC-------AAT-C-A-G----AAA--TAA------AAG-AAA-ATAT--------T-TTTTA-TTTT--AAAGTG-T--------------------TCTTTTAAATACATAA-GTAT----------TA------A-----------CAATT-TTTGG-T---ATA-TGCTTCATAAATA------------A-TGATATTG--TTCA-TTTCCATACT-T------ATGTAA----ATT---CCTCTG-AT-GT------T--AC----GTA-TATC------TATACATGAA-A-C-TTC-TG-CA---TT-G-TA-CCTC-----A-T-GTTCCACTTT---C---AC-C----GTGG-TTTGA----GC--GAA-TAAA-ATGAATga
gi|11 : TTTACCTGATATAAGAAAA--GAATAC-TTAAGCGCTGA-ATATTGTACTAGACC-AAAT--GTAATGGAA-TTAATG-ACA-TT---ATGTCAAC---CAATAC----TGCTAAA--ATC---TTTAA--AAA-CTTT-G----CATGTTTTA-TTCT--AAAG-G-TA-TGTGAATT--A-ATCTGTCCTCCTTAGCATAAAA-
gi|12 : GTTCTTTGTTTTC-TTTACATACA-TGTACCTACATAC----ACT---CTTCTG-AT-GT------T--AT----TTG-TACT------TATAAATGTA-A-C-ATT-TG-AA---TT-G-TG-TCTC-----A-T-ATACCAATAT---G---AT-T----GTGG-TTTGA----GA--GAA-TGAA-TTGAATTG-AATTGcttcacat
gi|13 : gAAAGCTACACATTATTTTTATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTA-AT-C-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTG-ACGaa
gi|14 : ggAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTG-ACG
gi|15 : gggAAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----A-GCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTG-ACG
gi|18 : ggCTG-ACCGT------TT-AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TATTT---TT-G-TACCCTC-----A-T-GTACCAACTT---A---AT-T----GT-G-TTTGA----GT--GAA--AAA--TGAATTGAAATTG
gi|19 : TCTG-AC-GT------T--AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TA-TT---TTTG-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GT--GAA-TAAA-TTGAATTGAAATTGaggtt
gi|2 : aGGTAAACATACACAATATTTT-ATCAAATT-ATTTAT-ATCTAT----A-TCGAAATGAC-TTTTCATTGATTTTCGTGAAAT-TTTTG-AA-A-TAGTCAAAAGGCAATGACACTAAAC--AGA--AAAAAAGGTCA-CAAA---AT---CAA-TG-ACGAGG-AGTTCAATTACCACATTTTTT-TAGCAAAATAATTATTATTCAGCC-GCAGTTTAGATTGAAC-ACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGC-GACACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-TGTGAACTATTTTTAATATTTTTTGAGGACGAACATCTCAAATTTCTATATCACTTGTAAAACGTACTAAAATCTACCTCCTTGAATATGTTAAAATTGATAATTTTTAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAA-TGAAACACTACTCTGCGATAAAT-CCTAAACTTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTG-AATTTAATGAAAA-TT---ATGTCGACTAATAATACAA-GTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTATTTTT--AAAATG-TA-TGAAAA----A-ATCGGCT-TCTTTAATACAAAA-TAACT--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-TA--TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGACTACA-T------ACAT-T----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----ATT-GTACCAACTT---A---GT-T----G-GG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGGa
gi|20 : -T------ACATAC----ACT---CTTCTG-AC-GT------C--AT----TTG-TATT------TATAAATGTA-A-C-TCT-TA-TT---GT-G-TG-CCTC-----A-T-GT-------------------------GG-TTTGA----GA--GAA-TAAA-TTGAACTGAAATTGatt
gi|24 : cc-TA-TA---CT-G-TG-CCTC-----A-T-GTACCGCTTT---C---AT-T----GTGG-TTTGAGTTTGAGCGAA-TAAA-ATGAA-TG-AAGTGaa
gi|25 : AAATACA-A-T-TCTATA-TTCTATT-G-CA-CCGC-----G-T-GTACCAA--T---A---AT--------GG-TTTGA----GA--GAA-TAAATT
gi|27 : CAATTTATATTGA--CACATTCAA--GAAAAAGATGAACTATGGTTGGTa
gi|3 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAA-TG-ACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGCCGACA--A-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTTCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATT---ATGTCGACTAGTAATAC-AAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTA-TTTTTTAAAATG-TA-TGAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---ACATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|4 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAA-TG-ACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGCCGACA--A-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATT---ATGTCGACTAGTAATAC-AAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTA-TTTTTTAAAATG-TA-TGAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|5 : AAAAAA--GAATACCTTCAGCAGAA---TATTGTACTAGACC-AAGT--ACTGTGAAATTTAATGAAAT-TT---ATGTGTACTAGTAA-------TATTACA--AAA---CTTAAGAAAA-CTGT-G----TATCCTTTA-TTTCA-AAAATA-TATTGAAAATTATA-GTCTGTTTTCTTT--T----------TC--TA---TTAATTGTAAA-----------CATTT-TATG--T---ATA-T---TCATG-ATA-----------TATTTTTATTTATTTCA-TTTGCATACC-T------ACATATTATGACT---CTTCTG-AC-GT------T--AT----TTG-TACT------AATAAATGTA-ACT-TTT-TG-TA---TT-G-TA-CCTCGATCAA-T-GTACC
gi|5 : -GTACCAAATT---A---GT-TCAAAGTGG-TTTGA----GA--GAA-TAAA-TTGAATTG-AAtcaaatatgtttcaatgtgtctatcgtaccaaattagttcaaagtggtttgagagaataaattgaattgaaaattgagatt
gi|6 : aaaaaagaataccttcagcagaatattgtactagaccaagtactgtgaaatttaatgaaatttatgtgtactagtaatattacaaaacttaagaaaactgtgtatcctttatttcaaaaatatattgaaaattatagtctgttttctttttctattaattgtaaacattttatgtatattcatgatatatttttatttatttcatttgcatacctacatattatgactcttctgacgttatttgtactaataaatgtaactttttgtattgtacctcgatcaatgtacctcaaatatgtttcaatgtgtctatcCAGCGCAAATAT--TGTACAAGACC-AAATTTATTATGAAATTTAATGAAC--TT---ATGTCCACTTGTAATAC------CCAAACCAAC---TTTAAG-AAAACTGTTG----TAT-CTTTA-TTTTC-AAAATA-TA-TAACCA----CTGTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTCC--G-----------TATTTACACAT-TGCAATA-T---TTATGTATGTATAGATATACTA-TATTATTGATTTTACTTTGC-TACCTT------ACACTT----CCT---CCTCTGTCC-GTGGA---T--AC----CTATTATG------TTTAACTAC----T-TTC-CA-TC---CT-G-TA-CCTCCG---A-T-GTACCAACTTCGCAT--ATCT----GTGGTTTTGA----GCT-GAACTAAATTGAAATTG-AACTaattgagatt
gi|7 : AACTT---A---AT-T----GTGG-TTTGA----GA---AA-TAAA-TTGAATTG-
gi|8 : attttaaAA-CTGT------TAT-CTTTA-TCT---AAAATA-TA-TAACAC----T-GTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTGT--ATTTACACTTGGCATAT-TATGTATTGGATA-G---CCATTTATA-----------TA-TATTATGA--TTTA-CTTGCATAC--T------ACATTC----ACT---CCT-TG-TC-GT------TGGATACCATTA-TTGT------TTTAACTA-G-A-T-T-T-TA------TT-GCTA-CCTC-----A-TCGTACC-ACTT---GCATAT-T----GTGG-TTTGA----GT--GAA--AAA-TTGAATTG-AATTtcggccgaattgacgtacaccctggtaccacaatatgtttgcacatctaaatgcaagaagcatcccggcaaaattgttcaaacttcggacaaaagcacttcgtcgatgacatcgctgtatccctaggatcgaagaactttccggtgcccagcctaagattgagaacaaagccacaaaatcgaaattcacctattctaagctgatgtcgaaaatatatttttttaattaaaaaaacggcaaattaattcttagttctaacgatggtgaaagtaaagaata
gi|9 : TAAA--AAAAGTCTTAA--AAA-CTGT-AGGCCTAT-GTTTA-TTTTGAAAAAT--TA-TGATAC----T-GTCTGTCCTCCTTGAT----------TC--CTAGATTTACTGT--A-----------CAT-------T-T---ACA-T---TT---------------------TGTCGT--GTCTT--TTT--ATACA-C------ATTTGT----ATTGTGCCTCTG-AC---------T--AG----TTT-TATTAATTAATATACATGTACA-TATGT-TA-CTA--TT-G-TA-CCTC-----T-T-GTACAAA--T---A---A--------TGG-TTTGA----GG--GAA-TAAACTCAAATtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCCCCTTTCCTATTATCAGATGATGTCGAGCAATTTCTTTTTTTTGTTGATAAAAACTGCAAATTACGATATATTAGTTCTGAAAAATGGTGCAAGGAAAGAATAA
Unaligned ( gi|17 ): CTTCACCTACATGTATTCTCAGCTGATATTGTGCTTTTTTTTTTCGTCGATAAAAATGGCAAATTGCGATATATTAGTTCTGAAAATGGTGAAAGTCAAGAATAAA
Unaligned ( gi|21 ): GTTTATTTTCATACCTAAATACATTCTTTTATTAATGCATGGAATTTCGTATTCCATTTCATTGTGATTTGAGCAAATAAAATGTGTG
Unaligned ( gi|22 ): CATTACCAGCTGATGTTGAGCATGTTTTTTCGTGGAGAAAAATGACGATATATGTGGTAAAAGTAAAGAATAAA
Unaligned ( gi|23 ): TTCTCAGCTGATATTGAGCAATTTTTTTCGTCGATAAAAATGACAAATTGCTTAAAATGTCAAGAATGAAC
Unaligned ( gi|26 ): ACCTATTTTCAGCTTTGATATTGAGCATTATTTTCGTCGATAAAAA
Alignments
lowQualScore : 1111111 11 1 111 111111 11 111 3333333333333 1 1 1 1 1 1 11 1 1111 1 1 11 1 1 1 11 4444444444444 1 555555555555 1 1 1 1 1 222 111111 11 11 111111 11111111 22222222222 111 111 22222222222 111111111 111111 111111 11111 1 1
lowQualScore : 5 4 77 4 22 5555555 33 2 1 66 888 1 777777 888 99 555 4444444444444 5 0 3 0 0 0 0 11 5 3 8888 0 0 77 0 0 2 0 33 1 8888888888888 5 111111111111 3 0 6 0 99 66 8 9 77 0 0 5 888 4 1 0 666 0 66 777 55 4 444444 88 55 33 4 4 2 999999 0 0 66666666 777 66 11111111111 4 99 555 4 222 22 11111111111 4 44 4 444444444 111111 666 3 3 444444 77 6666 3 9999999 1 2 2 2 2 888888 2 2 2 00000 2 2 2 8888888 555555 2 5555 55 2 9 0
lowQualScore : . . .. . .. ....... .. . . .. ... . ...... ... .. ... ............. . . . . . . . .. . . .... . . .. . . . . .. . ............. . ............ . . . . .. .. . . .. . . . ... . . . ... . .. ... .. . ...... .. .. .. . . . ...... . . ........ ... .. ........... . .. ... . ... .. ........... . .. . ......... ...... ... . . ...... .. .... . ....... . . . . . ...... . . . ..... . . . ....... ...... . .... .. . . .
lowQualScore : 7 0 99 3 33 9999999 00 0 0 77 111 0 111111 666 77 777 0000000000000 4 0 2 0 0 0 6 00 5 2 8888 0 0 00 0 0 5 0 88 0 5555555555555 5 222222222222 2 0 5 0 22 11 4 0 99 1 0 6 888 5 4 1 222 1 11 888 66 0 111111 55 00 55 0 0 3 000000 6 8 77777777 888 11 11111111111 4 00 666 4 222 11 11111111111 4 88 0 333333333 111111 444 1 1 222222 33 5555 1 3333333 1 9 9 9 7 555555 7 7 7 33333 7 5 4 6666666 888888 5 3333 99 5 5 0
consensus : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG-AAA-TT---ATGTCGACTAGTAATACAA-GTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
Reference ( family-3950 ) : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG-AAAATT---ATGTCGACTAGTAATAC-A-GTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|1 : GGTAA-GCTACACATTATCC--ATCAAATCAAT--ATGATATATTAATA-TCAGA-TGAAATTTACATTGATTTTCGTGAAATATTTTTTAA-TCTAGTCAAAAGTCAATGACACTAAACCAAAAGGAAAAAAAGTCAACAAATTCATTTTCAATGGACGAGGGAGTTCA-TTACCC-ACTTTTTGTTGCGAAATAATCATTATTCAGACCGCAGTTTAGATTGA--CACATTAAAAAGAAAAAGATGAACTATGGTTGGTTA-CATT-GAATTAAAGTCTGTGC---GACAAAGCGTATGAAACCACGTCCAAAAATAGATCATTTGAGTTGGGGCGTTACAAA-CACGAACTAATTA-GATATTTTT-GAGGCCGAA----TCAGATTTCTATATCAAT-GTAAAACTTACTGAAATGTACCTCCTGAAATGTGT--GAACTGATATTTTTTGAATTTCTTTTATATCAATATAGATTCGACACGACTTAAAAATATATAATCGAATAAAATCTAAAATAAAGAATAAAATAAAGAATAAAATGAAACACTACTCTGCGATAAATTCCTAAAC-TTGGTGTTACAGTAAACATACAGGACTTTGAGAGCGATTCCCGTTGTAGTTATTCTACATTTATCTACTATAAAAAAAAATAATACCTTCA-----AA-ATATTGTACTAGACC-AAAT--ACTGTGAAATTTAATG-AAA-TT---ATGTCGACTAGTAATAC-ATGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTA--AAAAAGATA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TTACT--TT---TCTGTTGT--A-----------CATTT-TATG--T---ATATT---TCATCTATA-----------TA-TTTCATTAGTTTTA-TTTGCATA--------------------------CCTCTG-AC-GTTATTAAT--AT----TTG-TACT------TAAAAATGTA-A-C-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-CTTGA----GA--GAA-TAAATT
gi|10 : AATATAATA-AAACTTGATATGTC-------AAT-C-A-G----AAA--TAA------AAG-AAA-ATAT--------T-TTTTA--TTTT--AAAGTG-T--------------------TCTTTTAAATACATAA-GTAT----------TA------A-----------CAATT-TTTGG-T---ATA-TGCTTCATAAATA------------A-TGATATTG--TTCA-TTTCCATACT-T------ATGTAA----ATT---CCTCTG-AT-GT------T--AC----GTA-TATC------TATACATGAA-A-C-TTC-TG-CA---TT-G-TA-CCTC-----A-T-GTTCCACTTT---C---AC-C----GTGG-TTTGA----GC--GAA-TAAA-ATGAATga
gi|11 : TTTACCTGATATAAGAAAA--GAATAC-TTAAGCGCTGA-ATATTGTACTAGACC-AAAT--GTAATGGAATT-AATG-ACA-TT---ATGTCAACCA---ATAC----TGCTAAA--ATC---TTTAA--AAA-CTTT-G----CATGTTTTA--TTCT--AAAG-G-TA-TGTGAATT--A-ATCTGTCCTCCTTAGCATAAAA-
gi|12 : GTTCTTTGTTTTC-TTTACATACA-TGTACCTACATAC----ACT---CTTCTG-AT-GT------T--AT----TTG-TACT------TATAAATGTA-A-C-ATT-TG-AA---TT-G-TG-TCTC-----A-T-ATACCAATAT---G---AT-T----GTGG-TTTGA----GA--GAA-TGAA-TTGAATTG-AATTGcttcacat
gi|13 : gAAAGCTACACATTATTTTTATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTA-AT-C-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACGaa
gi|14 : ggAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|15 : gggAAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----A-GCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|18 : ggCTG-ACCGT------TT-AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TATTT---TT-G-TACCCTC-----A-T-GTACCAACTT---A---AT-T----GT-G-TTTGA----GT--GAA--AAA--TGAATTGAAATTG
gi|19 : TCTG-AC-GT------T--AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TA-TT---TTTG-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GT--GAA-TAAA-TTGAATTGAAATTGaggtt
gi|2 : aGGTAAACATACACAATATTTT-ATCAAATT-ATTTAT-ATCTAT----A-TCGAAATGAC-TTTTCATTGATTTTCGTGAAAT-TTTTG-AA-A-TAGTCAAAAGGCAATGACACTAAAC--AGA--AAAAAAGGTCA-CAAA---AT---CAAT-GACGAGG-AGTTCAATTACCACATTTTTT-TAGCAAAATAATTATTATTCAGCC-GCAGTTTAGATTGAAC-ACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGCGAC-ACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-TGTGAACTATTTTTAATATTTTTTGAGGACGAACATCTCAAATTTCTATATCACTTGTAAAACGTACTAAAATCTACCTCCTTGAATATGTTAAAATTGATAATTTTTAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAA-TGAAACACTACTCTGCGATAAAT-CCTAAACTTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTG-AATTTAATG-AAAATT---ATGTCGACTAATAATACAA-GTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTAT-TTTT--AAAATG-TA-TGAAAA----A-ATCGGCT-TCTTTAATACAAAA-TAACT--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-TA--TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGACTACA-T------ACAT-T----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----ATT-GTACCAACTT---A---GT-T----G-GG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGGa
gi|20 : -T------ACATAC----ACT---CTTCTG-AC-GT------C--AT----TTG-TATT------TATAAATGTA-A-C-TCT-TA-TT---GT-G-TG-CCTC-----A-T-GT-------------------------GG-TTTGA----GA--GAA-TAAA-TTGAACTGAAATTGatt
gi|24 : cc-TA-TA---CT-G-TG-CCTC-----A-T-GTACCGCTTT---C---AT-T----GTGG-TTTGAGTTTGAGCGAA-TAAA-ATGAA-TG-AAGTGaa
gi|25 : AAATACA-A-T-TCTATA-TTCTATT-G-CA-CCGC-----G-T-GTACCAA--T---A---AT--------GG-TTTGA----GA--GAA-TAAATT
gi|27 : CAATTTATATTGA--CACATTCAA--GAAAAAGATGAACTATGGTTGGTa
gi|3 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTTCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATT---ATGTCGACTAGTAATACAA-GTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---ACATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|4 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATT---ATGTCGACTAGTAATACAA-GTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|5 : AAAAAA--GAATACCTTCAGCAGAA---TATTGTACTAGACC-AAGT--ACTGTGAAATTTAATG-AAATTT---ATGTGTACTAGTAA-------TATTACA--AAA---CTTAAGAAAA-CTGT-G----TATCCTTTA--TTTCA-AAAATA-TATTGAAAATTATA-GTCTGTTTTCTTT--T----------TC--TA---TTAATTGTAAA-----------CATTT-TATG--T---ATA-T---TCATG-ATA-----------TATTTTTATTTATTTCA-TTTGCATACC-T------ACATATTATGACT---CTTCTG-AC-GT------T--AT----TTG-TACT------AATAAATGTA-ACT-TTT-TG-TA---TT-G-TA-CCTCGATCAA-T-GTACC
gi|5 : -GTACCAAATT---A---GT-TCAAAGTGG-TTTGA----GA--GAA-TAAA-TTGAATTG-AAtcaaatatgtttcaatgtgtctatcgtaccaaattagttcaaagtggtttgagagaataaattgaattgaaaattgagatt
gi|6 : aaaaaagaataccttcagcagaatattgtactagaccaagtactgtgaaatttaatgaaatttatgtgtactagtaatattacaaaacttaagaaaactgtgtatcctttatttcaaaaatatattgaaaattatagtctgttttctttttctattaattgtaaacattttatgtatattcatgatatatttttatttatttcatttgcatacctacatattatgactcttctgacgttatttgtactaataaatgtaactttttgtattgtacctcgatcaatgtacctcaaatatgtttcaatgtgtctatcCAGCGCAAATAT--TGTACAAGACC-AAATTTATTATGAAATTTAATG-AAC-TT---ATGTCCACTTGTAATAC------CCAAACCAAC---TTTAAG-AAAACTGTTG----TAT-CTTTA--TTTTC-AAAATA-TA-TAACCA----CTGTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTCC--G-----------TATTTACACAT-TGCAATA-T---TTATGTATGTATAGATATACTA-TATTATTGATTTTACTTTGC-TACCTT------ACACTT----CCT---CCTCTGTCC-GTGGA---T--AC----CTATTATG------TTTAACTAC----T-TTC-CA-TC---CT-G-TA-CCTCCG---A-T-GTACCAACTTCGCAT--ATCT----GTGGTTTTGA----GCT-GAACTAAATTGAAATTG-AACTaattgagatt
gi|7 : AACTT---A---AT-T----GTGG-TTTGA----GA---AA-TAAA-TTGAATTG-
gi|8 : attttaaAA-CTGT------TAT-CTTTA--TCT---AAAATA-TA-TAACAC----T-GTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTGT--ATTTACACTTGGCATAT-TATGTATTGGATA-G---CCATTTATA-----------TA-TATTATGA--TTTA-CTTGCATAC--T------ACATTC----ACT---CCT-TG-TC-GT------TGGATACCATTA-TTGT------TTTAACTA-G-A-T-T-T-TA------TT-GCTA-CCTC-----A-TCGTACC-ACTT---GCATAT-T----GTGG-TTTGA----GT--GAA--AAA-TTGAATTG-AATTtcggccgaattgacgtacaccctggtaccacaatatgtttgcacatctaaatgcaagaagcatcccggcaaaattgttcaaacttcggacaaaagcacttcgtcgatgacatcgctgtatccctaggatcgaagaactttccggtgcccagcctaagattgagaacaaagccacaaaatcgaaattcacctattctaagctgatgtcgaaaatatatttttttaattaaaaaaacggcaaattaattcttagttctaacgatggtgaaagtaaagaata
gi|9 : TAAA--AAAAGTCTTAA--AAA-CTGT-AGGCCTAT-GTTTA--TTTTGAAAAAT--TA-TGATAC----T-GTCTGTCCTCCTTGAT----------TC--CTAGATTTACTGT--A-----------CAT-------T-T---ACA-T---TT---------------------TGTCGT--GTCTT--TTT--ATACA-C------ATTTGT----ATTGTGCCTCTG-AC---------T--AG----TTT-TATTAATTAATATACATGTACA-TATGT-TA-CTA--TT-G-TA-CCTC-----T-T-GTACAAA--T---A---A--------TGG-TTTGA----GG--GAA-TAAACTCAAATtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCCCCTTTCCTATTATCAGATGATGTCGAGCAATTTCTTTTTTTTGTTGATAAAAACTGCAAATTACGATATATTAGTTCTGAAAAATGGTGCAAGGAAAGAATAA
Unaligned ( gi|17 ): CTTCACCTACATGTATTCTCAGCTGATATTGTGCTTTTTTTTTTCGTCGATAAAAATGGCAAATTGCGATATATTAGTTCTGAAAATGGTGAAAGTCAAGAATAAA
Unaligned ( gi|21 ): GTTTATTTTCATACCTAAATACATTCTTTTATTAATGCATGGAATTTCGTATTCCATTTCATTGTGATTTGAGCAAATAAAATGTGTG
Unaligned ( gi|22 ): CATTACCAGCTGATGTTGAGCATGTTTTTTCGTGGAGAAAAATGACGATATATGTGGTAAAAGTAAAGAATAAA
Unaligned ( gi|23 ): TTCTCAGCTGATATTGAGCAATTTTTTTCGTCGATAAAAATGACAAATTGCTTAAAATGTCAAGAATGAAC
Unaligned ( gi|26 ): ACCTATTTTCAGCTTTGATATTGAGCATTATTTTCGTCGATAAAAA
Alignments
lowQualScore : 1111111 11 1 111 111111 11 111 3333333333333 1 1 1 1 1 1 11 1 1111 1 1 11 1 1 1 11 4444444444444 1 555555555555 1 1 1 11 1111 11 11 11 11111111 11111111 22222222222 111 111 22222222222 111111111 111111 111111 11111 1 1
lowQualScore : 5 4 77 4 22 5555555 33 2 1 66 888 1 777777 888 99 555 4444444444444 5 0 3 0 0 0 0 11 5 3 8888 0 0 77 0 0 2 0 33 1 8888888888888 5 111111111111 3 0 6 0 99 66 8 9 77 0 88 5 0000 0 99 0 66 777 22 4 8888 99 55 33 4 4 88888888 0 0 66666666 777 66 11111111111 4 99 555 4 222 22 11111111111 4 44 4 444444444 111111 666 3 3 444444 77 6666 3 9999999 1 2 2 2 2 888888 2 2 2 00000 2 2 2 8888888 555555 2 5555 55 2 9 0
lowQualScore : . . .. . .. ....... .. . . .. ... . ...... ... .. ... ............. . . . . . . . .. . . .... . . .. . . . . .. . ............. . ............ . . . . .. .. . . .. . .. . .... . .. . .. ... .. . .... .. .. .. . . ........ . . ........ ... .. ........... . .. ... . ... .. ........... . .. . ......... ...... ... . . ...... .. .... . ....... . . . . . ...... . . . ..... . . . ....... ...... . .... .. . . .
lowQualScore : 7 0 99 3 33 9999999 00 0 0 77 111 0 111111 666 77 777 0000000000000 4 0 2 0 0 0 6 00 5 2 8888 0 0 00 0 0 5 0 88 0 5555555555555 5 222222222222 2 0 5 0 22 11 4 0 99 1 88 0 6666 2 55 1 11 888 88 0 5555 44 00 55 0 0 77777777 6 8 77777777 888 11 11111111111 4 00 666 4 222 11 11111111111 4 88 0 333333333 111111 444 1 1 222222 33 5555 1 3333333 1 9 9 9 7 555555 7 7 7 33333 7 5 4 6666666 888888 5 3333 99 5 5 0
consensus : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGA-AAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
Reference ( family-3950 ) : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG--AAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|1 : GGTAA-GCTACACATTATCC--ATCAAATCAAT--ATGATATATTAATA-TCAGA-TGAAATTTACATTGATTTTCGTGAAATATTTTTTAA-TCTAGTCAAAAGTCAATGACACTAAACCAAAAGGAAAAAAAGTCAACAAATTCATTTTCAATGGACGAGGGAGTTCA-TTACCC-ACTTTTTGTTGCGAAATAATCATTATTCAGACCGCAGTTTAGATTGA--CACATTAAAAAGAAAAAGATGAACTATGGTTGGTTA-CATT-GAATTAAAGTCTGTGC---GACAAAGCGTATGAAACCACGTCCAAAAATAGATCATTTGAGTTGGGGCGTTACAAA-CACGAACTAATTA-GATATTTTT-GAGGCCGAA----TCAGATTTCTATATCAAT-GTAAAACTTACTGAAATGTACCTCCTGAAATGTGT--GAACTGATATTTTTTGAATTTCTTTTATATCAATATAGATTCGACACGACTTAAAAATATATAATCGAATAAAATCTAAAATAAAGAATAAAATAAAGAATAAAATGAAACACTACTCTGCGATAAATTCCTAAAC-TTGGTGTTACAGTAAACATACAGGACTTTGAGAGCGATTCCCGTTGTAGTTATTCTACATTTATCTACTATAAAAAAAAATAATACCTTCA-----AA-ATATTGTACTAGACC-AAAT--ACTGTGAAATTTAATG--AAA-TT----ATGTCGACTAGTAATACATGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTA--AAAAAGATA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TTACT--TT---TCTGTTGT--A-----------CATTT-TATG--T---ATATT---TCATCTATA-----------TA-TTTCATTAGTTTTA-TTTGCATA--------------------------CCTCTG-AC-GTTATTAAT--AT----TTG-TACT------TAAAAATGTA-A-C-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-CTTGA----GA--GAA-TAAATT
gi|10 : AATATAATA--AAA-CTTGATATGTCAATCAGAAATAAAAG----AAA--ATA---TTT----------------------TTTA--TTTT--AAAGTG-T---------------------TCTTTTAAATACATAA-GTAT----------TA------A-----------CAATT-TTTGG-T---ATA-TGCTTCATAAATA------------A-TGATATTG--TTCA-TTTCCATACT-T------ATGTAA----ATT---CCTCTG-AT-GT------T--AC----GTA-TATC------TATACATGAA-A-C-TTC-TG-CA---TT-G-TA-CCTC-----A-T-GTTCCACTTT---C---AC-C----GTGG-TTTGA----GC--GAA-TAAA-ATGAATga
gi|11 : TTTACCTGATATAAGAAAA--GAATAC-TTAAGCGCTGA-ATATTGTACTAGACC-AAAT--GTAATGGAATT-AATG--ACA-TT----ATGTCAACCA---ATAC---TGCTAAA--ATC---TTTAA--AAACTT-TG----CATGTTTTA--TTCT--AAAG-G-TA-TGTGAATT--A--ATCTGTCCTCCTTAGCATAAAA-
gi|12 : GTTCTTTGTTTTC-TTTACATACA-TGTACCTACATAC----ACT---CTTCTG-AT-GT------T--AT----TTG-TACT------TATAAATGTA-A-C-ATT-TG-AA---TT-G-TG-TCTC-----A-T-ATACCAATAT---G---AT-T----GTGG-TTTGA----GA--GAA-TGAA-TTGAATTG-AATTGcttcacat
gi|13 : gAAAGCTACACATTATTTTTATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTA-AT-C-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACGaa
gi|14 : ggAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|15 : gggAAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----A-GCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|18 : ggCTG-ACCGT------TT-AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TATTT---TT-G-TACCCTC-----A-T-GTACCAACTT---A---AT-T----GT-G-TTTGA----GT--GAA--AAA--TGAATTGAAATTG
gi|19 : TCTG-AC-GT------T--AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TA-TT---TTTG-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GT--GAA-TAAA-TTGAATTGAAATTGaggtt
gi|2 : aGGTAAACATACACAATATTTT-ATCAAATT-ATTTAT-ATCTAT----A-TCGAAATGAC-TTTTCATTGATTTTCGTGAAAT-TTTTG-AA-A-TAGTCAAAAGGCAATGACACTAAAC--AGA--AAAAAAGGTCA-CAAA---AT---CAAT-GACGAGG-AGTTCAATTACCACATTTTTT-TAGCAAAATAATTATTATTCAGCC-GCAGTTTAGATTGAAC-ACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGCGAC-ACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-TGTGAACTATTTTTAATATTTTTTGAGGACGAACATCTCAAATTTCTATATCACTTGTAAAACGTACTAAAATCTACCTCCTTGAATATGTTAAAATTGATAATTTTTAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAA-TGAAACACTACTCTGCGATAAAT-CCTAAACTTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTG-AATTTAATGA-AAA-TT----ATGTCGACTAATAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-TTTTAT-TTTT--AAAATG-TA-TGAAAA----A--ATCGGCT-TCTTTAATACAAAA-TAACT--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-TA--TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGACTACA-T------ACAT-T----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----ATT-GTACCAACTT---A---GT-T----G-GG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGGa
gi|20 : -T------ACATAC----ACT---CTTCTG-AC-GT------C--AT----TTG-TATT------TATAAATGTA-A-C-TCT-TA-TT---GT-G-TG-CCTC-----A-T-GT-------------------------GG-TTTGA----GA--GAA-TAAA-TTGAACTGAAATTGatt
gi|24 : cc-TA-TA---CT-G-TG-CCTC-----A-T-GTACCGCTTT---C---AT-T----GTGG-TTTGAGTTTGAGCGAA-TAAA-ATGAA-TG-AAGTGaa
gi|25 : AAATACA-A-T-TCTATA-TTCTATT-G-CA-CCGC-----G-T-GTACCAA--T---A---AT--------GG-TTTGA----GA--GAA-TAAATT
gi|27 : CAATTTATATTGA--CACATTCAA--GAAAAAGATGAACTATGGTTGGTa
gi|3 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTTCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A--ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---ACATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|4 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A--ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|5 : AAAAAA--GAATACCTTCAGCAGAA---TATTGTACTAGACC-AAGT--ACTGTGAAATTTAATG--AAATTT----ATGTGTACTAGTAA------TATTACA--AAA---CTTAAGAAAACTG-TG----TATCCTTTA--TTTCA-AAAATA-TATTGAAAATTATA--GTCTGTTTTCTTT--T----------TC--TA---TTAATTGTAAA-----------CATTT-TATG--T---ATA-T---TCATG-ATA-----------TATTTTTATTTATTTCA-TTTGCATACC-T------ACATATTATGACT---CTTCTG-AC-GT------T--AT----TTG-TACT------AATAAATGTA-ACT-TTT-TG-TA---TT-G-TA-CCTCGATCAA-T-GTACC
gi|5 : -GTACCAAATT---A---GT-TCAAAGTGG-TTTGA----GA--GAA-TAAA-TTGAATTG-AAtcaaatatgtttcaatgtgtctatcgtaccaaattagttcaaagtggtttgagagaataaattgaattgaaaattgagatt
gi|6 : aaaaaagaataccttcagcagaatattgtactagaccaagtactgtgaaatttaatgaaatttatgtgtactagtaatattacaaaacttaagaaaactgtgtatcctttatttcaaaaatatattgaaaattatagtctgttttctttttctattaattgtaaacattttatgtatattcatgatatatttttatttatttcatttgcatacctacatattatgactcttctgacgttatttgtactaataaatgtaactttttgtattgtacctcgatcaatgtacctcaaatatgtttcaatgtgtctatcCAGCGCAAATAT--TGTACAAGACC-AAATTTATTATGAAATTTAATG--AAC-TT----ATGTCCACTTGTAATAC-----CCAAACCAAC---TTTAAGAAAACTGTTG----TAT-CTTTA--TTTTC-AAAATA-TA-T-AACC----ACTGTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTCC--G-----------TATTTACACAT-TGCAATA-T---TTATGTATGTATAGATATACTA-TATTATTGATTTTACTTTGC-TACCTT------ACACTT----CCT---CCTCTGTCC-GTGGA---T--AC----CTATTATG------TTTAACTAC----T-TTC-CA-TC---CT-G-TA-CCTCCG---A-T-GTACCAACTTCGCAT--ATCT----GTGGTTTTGA----GCT-GAACTAAATTGAAATTG-AACTaattgagatt
gi|7 : AACTT---A---AT-T----GTGG-TTTGA----GA---AA-TAAA-TTGAATTG-
gi|8 : attttaaAACTG-T-----TAT-CTTTA--TCT---AAAATA-TA-TAACAC----T--GTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTGT--ATTTACACTTGGCATAT-TATGTATTGGATA-G---CCATTTATA-----------TA-TATTATGA--TTTA-CTTGCATAC--T------ACATTC----ACT---CCT-TG-TC-GT------TGGATACCATTA-TTGT------TTTAACTA-G-A-T-T-T-TA------TT-GCTA-CCTC-----A-TCGTACC-ACTT---GCATAT-T----GTGG-TTTGA----GT--GAA--AAA-TTGAATTG-AATTtcggccgaattgacgtacaccctggtaccacaatatgtttgcacatctaaatgcaagaagcatcccggcaaaattgttcaaacttcggacaaaagcacttcgtcgatgacatcgctgtatccctaggatcgaagaactttccggtgcccagcctaagattgagaacaaagccacaaaatcgaaattcacctattctaagctgatgtcgaaaatatatttttttaattaaaaaaacggcaaattaattcttagttctaacgatggtgaaagtaaagaata
gi|9 : TAAA--AAAAGTCTTAA--AAACTG-TAGGCCTAT-GTTTA--TTTTGAAAAAT--TA-TGATAC----T--GTCTGTCCTCCTTGAT----------TC--CTAGATTTACTGT--A-----------CAT-------T-T---ACA-T---TT---------------------TGTCGT--GTCTT--TTT--ATACA-C------ATTTGT----ATTGTGCCTCTG-AC---------T--AG----TTT-TATTAATTAATATACATGTACA-TATGT-TA-CTA--TT-G-TA-CCTC-----T-T-GTACAAA--T---A---A--------TGG-TTTGA----GG--GAA-TAAACTCAAATtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCCCCTTTCCTATTATCAGATGATGTCGAGCAATTTCTTTTTTTTGTTGATAAAAACTGCAAATTACGATATATTAGTTCTGAAAAATGGTGCAAGGAAAGAATAA
Unaligned ( gi|17 ): CTTCACCTACATGTATTCTCAGCTGATATTGTGCTTTTTTTTTTCGTCGATAAAAATGGCAAATTGCGATATATTAGTTCTGAAAATGGTGAAAGTCAAGAATAAA
Unaligned ( gi|21 ): GTTTATTTTCATACCTAAATACATTCTTTTATTAATGCATGGAATTTCGTATTCCATTTCATTGTGATTTGAGCAAATAAAATGTGTG
Unaligned ( gi|22 ): CATTACCAGCTGATGTTGAGCATGTTTTTTCGTGGAGAAAAATGACGATATATGTGGTAAAAGTAAAGAATAAA
Unaligned ( gi|23 ): TTCTCAGCTGATATTGAGCAATTTTTTTCGTCGATAAAAATGACAAATTGCTTAAAATGTCAAGAATGAAC
Unaligned ( gi|26 ): ACCTATTTTCAGCTTTGATATTGAGCATTATTTTCGTCGATAAAAA
Alignments
lowQualScore : 1111111 11 1 111 111111 11 111 3333333333333 1 1 1 1 1 1 11 1 1111 1 1 11 1 1 1 11 4444444444444 1 555555555555 1 1 1 1 1 111111 11 11 111111 11111111 22222222222 111 111 22222222222 111111111 111111 111111 11111 1 1
lowQualScore : 5 4 77 4 22 5555555 33 2 1 66 888 1 777777 888 99 555 4444444444444 5 0 3 0 0 0 0 11 5 3 8888 0 0 77 0 0 2 0 33 1 8888888888888 5 111111111111 3 0 6 0 99 66 8 9 77 0 0 5 888 0 99 0 66 777 88 4 111111 99 55 33 4 4 2 999999 0 0 66666666 777 66 11111111111 4 99 555 4 222 22 11111111111 4 44 4 444444444 111111 666 3 3 444444 77 6666 3 9999999 1 2 2 2 2 888888 2 2 2 00000 2 2 2 8888888 555555 2 5555 55 2 9 0
lowQualScore : . . .. . .. ....... .. . . .. ... . ...... ... .. ... ............. . . . . . . . .. . . .... . . .. . . . . .. . ............. . ............ . . . . .. .. . . .. . . . ... . .. . .. ... .. . ...... .. .. .. . . . ...... . . ........ ... .. ........... . .. ... . ... .. ........... . .. . ......... ...... ... . . ...... .. .... . ....... . . . . . ...... . . . ..... . . . ....... ...... . .... .. . . .
lowQualScore : 7 0 99 3 33 9999999 00 0 0 77 111 0 111111 666 77 777 0000000000000 4 0 2 0 0 0 6 00 5 2 8888 0 0 00 0 0 5 0 88 0 5555555555555 5 222222222222 2 0 5 0 22 11 4 0 99 1 0 6 888 2 55 1 11 888 33 0 666666 44 00 55 0 0 3 000000 6 8 77777777 888 11 11111111111 4 00 666 4 222 11 11111111111 4 88 0 333333333 111111 444 1 1 222222 33 5555 1 3333333 1 9 9 9 7 555555 7 7 7 33333 7 5 4 6666666 888888 5 3333 99 5 5 0
consensus : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG-AAA-TT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
Reference ( family-3950 ) : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG-AAAATT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|1 : GGTAA-GCTACACATTATCC--ATCAAATCAAT--ATGATATATTAATA-TCAGA-TGAAATTTACATTGATTTTCGTGAAATATTTTTTAA-TCTAGTCAAAAGTCAATGACACTAAACCAAAAGGAAAAAAAGTCAACAAATTCATTTTCAATGGACGAGGGAGTTCA-TTACCC-ACTTTTTGTTGCGAAATAATCATTATTCAGACCGCAGTTTAGATTGA--CACATTAAAAAGAAAAAGATGAACTATGGTTGGTTA-CATT-GAATTAAAGTCTGTGC---GACAAAGCGTATGAAACCACGTCCAAAAATAGATCATTTGAGTTGGGGCGTTACAAA-CACGAACTAATTA-GATATTTTT-GAGGCCGAA----TCAGATTTCTATATCAAT-GTAAAACTTACTGAAATGTACCTCCTGAAATGTGT--GAACTGATATTTTTTGAATTTCTTTTATATCAATATAGATTCGACACGACTTAAAAATATATAATCGAATAAAATCTAAAATAAAGAATAAAATAAAGAATAAAATGAAACACTACTCTGCGATAAATTCCTAAAC-TTGGTGTTACAGTAAACATACAGGACTTTGAGAGCGATTCCCGTTGTAGTTATTCTACATTTATCTACTATAAAAAAAAATAATACCTTCA-----AA-ATATTGTACTAGACC-AAAT--ACTGTGAAATTTAATG-AAA-TT---ATGTCGACTAGTAATACATGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTA--AAAAAGATA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TTACT--TT---TCTGTTGT--A-----------CATTT-TATG--T---ATATT---TCATCTATA-----------TA-TTTCATTAGTTTTA-TTTGCATA--------------------------CCTCTG-AC-GTTATTAAT--AT----TTG-TACT------TAAAAATGTA-A-C-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-CTTGA----GA--GAA-TAAATT
gi|10 : AATATAATA-AAACTTGATATGTCAATCAGAAATAAAAG----AAA--ATA---TTT-----------------------TTTA--TTTT--AAAGTG-T--------------------TCTTTTAAATACATAA-GTAT----------TA------A-----------CAATT-TTTGG-T---ATA-TGCTTCATAAATA------------A-TGATATTG--TTCA-TTTCCATACT-T------ATGTAA----ATT---CCTCTG-AT-GT------T--AC----GTA-TATC------TATACATGAA-A-C-TTC-TG-CA---TT-G-TA-CCTC-----A-T-GTTCCACTTT---C---AC-C----GTGG-TTTGA----GC--GAA-TAAA-ATGAATga
gi|11 : TTTACCTGATATAAGAAAA--GAATAC-TTAAGCGCTGA-ATATTGTACTAGACC-AAAT--GTAATGGAATT-AATG-ACA-TT---ATGTCAACCA---ATAC---TGCTAAA--ATC---TTTAA--AAA-CTTT-G----CATGTTTTA--TTCT--AAAG-G-TA-TGTGAATT--A-ATCTGTCCTCCTTAGCATAAAA-
gi|12 : GTTCTTTGTTTTC-TTTACATACA-TGTACCTACATAC----ACT---CTTCTG-AT-GT------T--AT----TTG-TACT------TATAAATGTA-A-C-ATT-TG-AA---TT-G-TG-TCTC-----A-T-ATACCAATAT---G---AT-T----GTGG-TTTGA----GA--GAA-TGAA-TTGAATTG-AATTGcttcacat
gi|13 : gAAAGCTACACATTATTTTTATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTA-AT-C-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACGaa
gi|14 : ggAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|15 : gggAAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----A-GCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|18 : ggCTG-ACCGT------TT-AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TATTT---TT-G-TACCCTC-----A-T-GTACCAACTT---A---AT-T----GT-G-TTTGA----GT--GAA--AAA--TGAATTGAAATTG
gi|19 : TCTG-AC-GT------T--AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TA-TT---TTTG-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GT--GAA-TAAA-TTGAATTGAAATTGaggtt
gi|2 : aGGTAAACATACACAATATTTT-ATCAAATT-ATTTAT-ATCTAT----A-TCGAAATGAC-TTTTCATTGATTTTCGTGAAAT-TTTTG-AA-A-TAGTCAAAAGGCAATGACACTAAAC--AGA--AAAAAAGGTCA-CAAA---AT---CAAT-GACGAGG-AGTTCAATTACCACATTTTTT-TAGCAAAATAATTATTATTCAGCC-GCAGTTTAGATTGAAC-ACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGCGAC-ACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-TGTGAACTATTTTTAATATTTTTTGAGGACGAACATCTCAAATTTCTATATCACTTGTAAAACGTACTAAAATCTACCTCCTTGAATATGTTAAAATTGATAATTTTTAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAA-TGAAACACTACTCTGCGATAAAT-CCTAAACTTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTG-AATTTAATG-AAAATT---ATGTCGACTAATAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTAT-TTTT--AAAATG-TA-TGAAAA----A-ATCGGCT-TCTTTAATACAAAA-TAACT--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-TA--TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGACTACA-T------ACAT-T----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----ATT-GTACCAACTT---A---GT-T----G-GG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGGa
gi|20 : -T------ACATAC----ACT---CTTCTG-AC-GT------C--AT----TTG-TATT------TATAAATGTA-A-C-TCT-TA-TT---GT-G-TG-CCTC-----A-T-GT-------------------------GG-TTTGA----GA--GAA-TAAA-TTGAACTGAAATTGatt
gi|24 : cc-TA-TA---CT-G-TG-CCTC-----A-T-GTACCGCTTT---C---AT-T----GTGG-TTTGAGTTTGAGCGAA-TAAA-ATGAA-TG-AAGTGaa
gi|25 : AAATACA-A-T-TCTATA-TTCTATT-G-CA-CCGC-----G-T-GTACCAA--T---A---AT--------GG-TTTGA----GA--GAA-TAAATT
gi|27 : CAATTTATATTGA--CACATTCAA--GAAAAAGATGAACTATGGTTGGTa
gi|3 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTTCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---ACATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|4 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|5 : AAAAAA--GAATACCTTCAGCAGAA---TATTGTACTAGACC-AAGT--ACTGTGAAATTTAATG-AAATTT---ATGTGTACTAGTAA------TATTACA--AAA---CTTAAGAAAA-CTGT-G----TATCCTTTA--TTTCA-AAAATA-TATTGAAAATTATA-GTCTGTTTTCTTT--T----------TC--TA---TTAATTGTAAA-----------CATTT-TATG--T---ATA-T---TCATG-ATA-----------TATTTTTATTTATTTCA-TTTGCATACC-T------ACATATTATGACT---CTTCTG-AC-GT------T--AT----TTG-TACT------AATAAATGTA-ACT-TTT-TG-TA---TT-G-TA-CCTCGATCAA-T-GTACC
gi|5 : -GTACCAAATT---A---GT-TCAAAGTGG-TTTGA----GA--GAA-TAAA-TTGAATTG-AAtcaaatatgtttcaatgtgtctatcgtaccaaattagttcaaagtggtttgagagaataaattgaattgaaaattgagatt
gi|6 : aaaaaagaataccttcagcagaatattgtactagaccaagtactgtgaaatttaatgaaatttatgtgtactagtaatattacaaaacttaagaaaactgtgtatcctttatttcaaaaatatattgaaaattatagtctgttttctttttctattaattgtaaacattttatgtatattcatgatatatttttatttatttcatttgcatacctacatattatgactcttctgacgttatttgtactaataaatgtaactttttgtattgtacctcgatcaatgtacctcaaatatgtttcaatgtgtctatcCAGCGCAAATAT--TGTACAAGACC-AAATTTATTATGAAATTTAATG-AAC-TT---ATGTCCACTTGTAATAC-----CCAAACCAAC---TTTAAG-AAAACTGTTG----TAT-CTTTA--TTTTC-AAAATA-TA-TAACCA----CTGTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTCC--G-----------TATTTACACAT-TGCAATA-T---TTATGTATGTATAGATATACTA-TATTATTGATTTTACTTTGC-TACCTT------ACACTT----CCT---CCTCTGTCC-GTGGA---T--AC----CTATTATG------TTTAACTAC----T-TTC-CA-TC---CT-G-TA-CCTCCG---A-T-GTACCAACTTCGCAT--ATCT----GTGGTTTTGA----GCT-GAACTAAATTGAAATTG-AACTaattgagatt
gi|7 : AACTT---A---AT-T----GTGG-TTTGA----GA---AA-TAAA-TTGAATTG-
gi|8 : attttaaAA-CTGT------TAT-CTTTA--TCT---AAAATA-TA-TAACAC----T-GTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTGT--ATTTACACTTGGCATAT-TATGTATTGGATA-G---CCATTTATA-----------TA-TATTATGA--TTTA-CTTGCATAC--T------ACATTC----ACT---CCT-TG-TC-GT------TGGATACCATTA-TTGT------TTTAACTA-G-A-T-T-T-TA------TT-GCTA-CCTC-----A-TCGTACC-ACTT---GCATAT-T----GTGG-TTTGA----GT--GAA--AAA-TTGAATTG-AATTtcggccgaattgacgtacaccctggtaccacaatatgtttgcacatctaaatgcaagaagcatcccggcaaaattgttcaaacttcggacaaaagcacttcgtcgatgacatcgctgtatccctaggatcgaagaactttccggtgcccagcctaagattgagaacaaagccacaaaatcgaaattcacctattctaagctgatgtcgaaaatatatttttttaattaaaaaaacggcaaattaattcttagttctaacgatggtgaaagtaaagaata
gi|9 : TAAA--AAAAGTCTTAA--AAA-CTGT-AGGCCTAT-GTTTA--TTTTGAAAAAT--TA-TGATAC----T-GTCTGTCCTCCTTGAT----------TC--CTAGATTTACTGT--A-----------CAT-------T-T---ACA-T---TT---------------------TGTCGT--GTCTT--TTT--ATACA-C------ATTTGT----ATTGTGCCTCTG-AC---------T--AG----TTT-TATTAATTAATATACATGTACA-TATGT-TA-CTA--TT-G-TA-CCTC-----T-T-GTACAAA--T---A---A--------TGG-TTTGA----GG--GAA-TAAACTCAAATtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCCCCTTTCCTATTATCAGATGATGTCGAGCAATTTCTTTTTTTTGTTGATAAAAACTGCAAATTACGATATATTAGTTCTGAAAAATGGTGCAAGGAAAGAATAA
Unaligned ( gi|17 ): CTTCACCTACATGTATTCTCAGCTGATATTGTGCTTTTTTTTTTCGTCGATAAAAATGGCAAATTGCGATATATTAGTTCTGAAAATGGTGAAAGTCAAGAATAAA
Unaligned ( gi|21 ): GTTTATTTTCATACCTAAATACATTCTTTTATTAATGCATGGAATTTCGTATTCCATTTCATTGTGATTTGAGCAAATAAAATGTGTG
Unaligned ( gi|22 ): CATTACCAGCTGATGTTGAGCATGTTTTTTCGTGGAGAAAAATGACGATATATGTGGTAAAAGTAAAGAATAAA
Unaligned ( gi|23 ): TTCTCAGCTGATATTGAGCAATTTTTTTCGTCGATAAAAATGACAAATTGCTTAAAATGTCAAGAATGAAC
Unaligned ( gi|26 ): ACCTATTTTCAGCTTTGATATTGAGCATTATTTTCGTCGATAAAAA
Alignments
lowQualScore : 1111111 11 1 111 111111 11 111 3333333333333 1 1 1 1 1 1 11 1 1111 1 1 11 1 1 1 11 4444444444444 1 555555555555 1 1 1 11 1111 11 11 11 11111111 11111111 22222222222 111 111 22222222222 111111111 111111 111111 11111 1 1
lowQualScore : 5 4 77 4 22 5555555 33 2 1 66 888 1 777777 888 99 555 4444444444444 5 0 3 0 0 0 0 11 5 3 8888 0 0 77 0 0 2 0 33 1 8888888888888 5 111111111111 3 0 6 0 99 66 8 9 77 0 88 5 0000 0 99 0 66 777 22 4 8888 99 55 33 4 4 88888888 0 0 66666666 777 66 11111111111 4 99 555 4 222 22 11111111111 4 44 4 444444444 111111 666 3 3 444444 77 6666 3 9999999 1 2 2 2 2 888888 2 2 2 00000 2 2 2 8888888 555555 2 5555 55 2 9 0
lowQualScore : . . .. . .. ....... .. . . .. ... . ...... ... .. ... ............. . . . . . . . .. . . .... . . .. . . . . .. . ............. . ............ . . . . .. .. . . .. . .. . .... . .. . .. ... .. . .... .. .. .. . . ........ . . ........ ... .. ........... . .. ... . ... .. ........... . .. . ......... ...... ... . . ...... .. .... . ....... . . . . . ...... . . . ..... . . . ....... ...... . .... .. . . .
lowQualScore : 7 0 99 3 33 9999999 00 0 0 77 111 0 111111 666 77 777 0000000000000 4 0 2 0 0 0 6 00 5 2 8888 0 0 00 0 0 5 0 88 0 5555555555555 5 222222222222 2 0 5 0 22 11 4 0 99 1 88 0 6666 2 55 1 11 888 88 0 5555 44 00 55 0 0 77777777 6 8 77777777 888 11 11111111111 4 00 666 4 222 11 11111111111 4 88 0 333333333 111111 444 1 1 222222 33 5555 1 3333333 1 9 9 9 7 555555 7 7 7 33333 7 5 4 6666666 888888 5 3333 99 5 5 0
consensus : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGA-AAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
Reference ( family-3950 ) : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG--AAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|1 : GGTAA-GCTACACATTATCC--ATCAAATCAAT--ATGATATATTAATA-TCAGA-TGAAATTTACATTGATTTTCGTGAAATATTTTTTAA-TCTAGTCAAAAGTCAATGACACTAAACCAAAAGGAAAAAAAGTCAACAAATTCATTTTCAATGGACGAGGGAGTTCA-TTACCC-ACTTTTTGTTGCGAAATAATCATTATTCAGACCGCAGTTTAGATTGA--CACATTAAAAAGAAAAAGATGAACTATGGTTGGTTA-CATT-GAATTAAAGTCTGTGC---GACAAAGCGTATGAAACCACGTCCAAAAATAGATCATTTGAGTTGGGGCGTTACAAA-CACGAACTAATTA-GATATTTTT-GAGGCCGAA----TCAGATTTCTATATCAAT-GTAAAACTTACTGAAATGTACCTCCTGAAATGTGT--GAACTGATATTTTTTGAATTTCTTTTATATCAATATAGATTCGACACGACTTAAAAATATATAATCGAATAAAATCTAAAATAAAGAATAAAATAAAGAATAAAATGAAACACTACTCTGCGATAAATTCCTAAAC-TTGGTGTTACAGTAAACATACAGGACTTTGAGAGCGATTCCCGTTGTAGTTATTCTACATTTATCTACTATAAAAAAAAATAATACCTTCA-----AA-ATATTGTACTAGACC-AAAT--ACTGTGAAATTTAATG--AAA-TT----ATGTCGACTAGTAATACATGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTA--AAAAAGATA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TTACT--TT---TCTGTTGT--A-----------CATTT-TATG--T---ATATT---TCATCTATA-----------TA-TTTCATTAGTTTTA-TTTGCATA--------------------------CCTCTG-AC-GTTATTAAT--AT----TTG-TACT------TAAAAATGTA-A-C-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-CTTGA----GA--GAA-TAAATT
gi|10 : AATATAATA--AAA-CTTGATATGTCAATCAGAAATAAAAG----AAA--ATA---TTT----------------------TTTA--TTTT--AAAGTG-T---------------------TCTTTTAAATACATAA-GTAT----------TA------A-----------CAATT-TTTGG-T---ATA-TGCTTCATAAATA------------A-TGATATTG--TTCA-TTTCCATACT-T------ATGTAA----ATT---CCTCTG-AT-GT------T--AC----GTA-TATC------TATACATGAA-A-C-TTC-TG-CA---TT-G-TA-CCTC-----A-T-GTTCCACTTT---C---AC-C----GTGG-TTTGA----GC--GAA-TAAA-ATGAATga
gi|11 : TTTACCTGATATAAGAAAA--GAATAC-TTAAGCGCTGA-ATATTGTACTAGACC-AAAT--GTAATGGAATT-AATG--ACA-TT----ATGTCAACCA---ATAC---TGCTAAA--ATC---TTTAA--AAACTT-TG----CATGTTTTA--TTCT--AAAG-G-TA-TGTGAATT--A--ATCTGTCCTCCTTAGCATAAAA-
gi|12 : GTTCTTTGTTTTC-TTTACATACA-TGTACCTACATAC----ACT---CTTCTG-AT-GT------T--AT----TTG-TACT------TATAAATGTA-A-C-ATT-TG-AA---TT-G-TG-TCTC-----A-T-ATACCAATAT---G---AT-T----GTGG-TTTGA----GA--GAA-TGAA-TTGAATTG-AATTGcttcacat
gi|13 : gAAAGCTACACATTATTTTTATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTA-AT-C-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACGaa
gi|14 : ggAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|15 : gggAAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----A-GCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|18 : ggCTG-ACCGT------TT-AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TATTT---TT-G-TACCCTC-----A-T-GTACCAACTT---A---AT-T----GT-G-TTTGA----GT--GAA--AAA--TGAATTGAAATTG
gi|19 : TCTG-AC-GT------T--AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TA-TT---TTTG-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GT--GAA-TAAA-TTGAATTGAAATTGaggtt
gi|2 : aGGTAAACATACACAATATTTT-ATCAAATT-ATTTAT-ATCTAT----A-TCGAAATGAC-TTTTCATTGATTTTCGTGAAAT-TTTTG-AA-A-TAGTCAAAAGGCAATGACACTAAAC--AGA--AAAAAAGGTCA-CAAA---AT---CAAT-GACGAGG-AGTTCAATTACCACATTTTTT-TAGCAAAATAATTATTATTCAGCC-GCAGTTTAGATTGAAC-ACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGCGAC-ACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-TGTGAACTATTTTTAATATTTTTTGAGGACGAACATCTCAAATTTCTATATCACTTGTAAAACGTACTAAAATCTACCTCCTTGAATATGTTAAAATTGATAATTTTTAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAA-TGAAACACTACTCTGCGATAAAT-CCTAAACTTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTG-AATTTAATGA-AAA-TT----ATGTCGACTAATAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-TTTTAT-TTTT--AAAATG-TA-TGAAAA----A--ATCGGCT-TCTTTAATACAAAA-TAACT--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-TA--TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGACTACA-T------ACAT-T----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----ATT-GTACCAACTT---A---GT-T----G-GG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGGa
gi|20 : -T------ACATAC----ACT---CTTCTG-AC-GT------C--AT----TTG-TATT------TATAAATGTA-A-C-TCT-TA-TT---GT-G-TG-CCTC-----A-T-GT-------------------------GG-TTTGA----GA--GAA-TAAA-TTGAACTGAAATTGatt
gi|24 : cc-TA-TA---CT-G-TG-CCTC-----A-T-GTACCGCTTT---C---AT-T----GTGG-TTTGAGTTTGAGCGAA-TAAA-ATGAA-TG-AAGTGaa
gi|25 : AAATACA-A-T-TCTATA-TTCTATT-G-CA-CCGC-----G-T-GTACCAA--T---A---AT--------GG-TTTGA----GA--GAA-TAAATT
gi|27 : CAATTTATATTGA--CACATTCAA--GAAAAAGATGAACTATGGTTGGTa
gi|3 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTTCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A--ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---ACATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|4 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A--ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|5 : AAAAAA--GAATACCTTCAGCAGAA---TATTGTACTAGACC-AAGT--ACTGTGAAATTTAATG--AAATTT----ATGTGTACTAGTAA------TATTACA--AAA---CTTAAGAAAACTG-TG----TATCCTTTA--TTTCA-AAAATA-TATTGAAAATTATA--GTCTGTTTTCTTT--T----------TC--TA---TTAATTGTAAA-----------CATTT-TATG--T---ATA-T---TCATG-ATA-----------TATTTTTATTTATTTCA-TTTGCATACC-T------ACATATTATGACT---CTTCTG-AC-GT------T--AT----TTG-TACT------AATAAATGTA-ACT-TTT-TG-TA---TT-G-TA-CCTCGATCAA-T-GTACC
gi|5 : -GTACCAAATT---A---GT-TCAAAGTGG-TTTGA----GA--GAA-TAAA-TTGAATTG-AAtcaaatatgtttcaatgtgtctatcgtaccaaattagttcaaagtggtttgagagaataaattgaattgaaaattgagatt
gi|6 : aaaaaagaataccttcagcagaatattgtactagaccaagtactgtgaaatttaatgaaatttatgtgtactagtaatattacaaaacttaagaaaactgtgtatcctttatttcaaaaatatattgaaaattatagtctgttttctttttctattaattgtaaacattttatgtatattcatgatatatttttatttatttcatttgcatacctacatattatgactcttctgacgttatttgtactaataaatgtaactttttgtattgtacctcgatcaatgtacctcaaatatgtttcaatgtgtctatcCAGCGCAAATAT--TGTACAAGACC-AAATTTATTATGAAATTTAATG--AAC-TT----ATGTCCACTTGTAATAC-----CCAAACCAAC---TTTAAGAAAACTGTTG----TAT-CTTTA--TTTTC-AAAATA-TA-T-AACC----ACTGTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTCC--G-----------TATTTACACAT-TGCAATA-T---TTATGTATGTATAGATATACTA-TATTATTGATTTTACTTTGC-TACCTT------ACACTT----CCT---CCTCTGTCC-GTGGA---T--AC----CTATTATG------TTTAACTAC----T-TTC-CA-TC---CT-G-TA-CCTCCG---A-T-GTACCAACTTCGCAT--ATCT----GTGGTTTTGA----GCT-GAACTAAATTGAAATTG-AACTaattgagatt
gi|7 : AACTT---A---AT-T----GTGG-TTTGA----GA---AA-TAAA-TTGAATTG-
gi|8 : attttaaAACTG-T-----TAT-CTTTA--TCT---AAAATA-TA-TAACAC----T--GTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTGT--ATTTACACTTGGCATAT-TATGTATTGGATA-G---CCATTTATA-----------TA-TATTATGA--TTTA-CTTGCATAC--T------ACATTC----ACT---CCT-TG-TC-GT------TGGATACCATTA-TTGT------TTTAACTA-G-A-T-T-T-TA------TT-GCTA-CCTC-----A-TCGTACC-ACTT---GCATAT-T----GTGG-TTTGA----GT--GAA--AAA-TTGAATTG-AATTtcggccgaattgacgtacaccctggtaccacaatatgtttgcacatctaaatgcaagaagcatcccggcaaaattgttcaaacttcggacaaaagcacttcgtcgatgacatcgctgtatccctaggatcgaagaactttccggtgcccagcctaagattgagaacaaagccacaaaatcgaaattcacctattctaagctgatgtcgaaaatatatttttttaattaaaaaaacggcaaattaattcttagttctaacgatggtgaaagtaaagaata
gi|9 : TAAA--AAAAGTCTTAA--AAACTG-TAGGCCTAT-GTTTA--TTTTGAAAAAT--TA-TGATAC----T--GTCTGTCCTCCTTGAT----------TC--CTAGATTTACTGT--A-----------CAT-------T-T---ACA-T---TT---------------------TGTCGT--GTCTT--TTT--ATACA-C------ATTTGT----ATTGTGCCTCTG-AC---------T--AG----TTT-TATTAATTAATATACATGTACA-TATGT-TA-CTA--TT-G-TA-CCTC-----T-T-GTACAAA--T---A---A--------TGG-TTTGA----GG--GAA-TAAACTCAAATtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCCCCTTTCCTATTATCAGATGATGTCGAGCAATTTCTTTTTTTTGTTGATAAAAACTGCAAATTACGATATATTAGTTCTGAAAAATGGTGCAAGGAAAGAATAA
Unaligned ( gi|17 ): CTTCACCTACATGTATTCTCAGCTGATATTGTGCTTTTTTTTTTCGTCGATAAAAATGGCAAATTGCGATATATTAGTTCTGAAAATGGTGAAAGTCAAGAATAAA
Unaligned ( gi|21 ): GTTTATTTTCATACCTAAATACATTCTTTTATTAATGCATGGAATTTCGTATTCCATTTCATTGTGATTTGAGCAAATAAAATGTGTG
Unaligned ( gi|22 ): CATTACCAGCTGATGTTGAGCATGTTTTTTCGTGGAGAAAAATGACGATATATGTGGTAAAAGTAAAGAATAAA
Unaligned ( gi|23 ): TTCTCAGCTGATATTGAGCAATTTTTTTCGTCGATAAAAATGACAAATTGCTTAAAATGTCAAGAATGAAC
Unaligned ( gi|26 ): ACCTATTTTCAGCTTTGATATTGAGCATTATTTTCGTCGATAAAAA
Alignments
lowQualScore : 1111111 11 1 111 111111 11 111 3333333333333 1 1 1 1 1 1 11 1 1111 1 1 11 1 1 1 11 4444444444444 1 555555555555 1 1 1 1 1 111111 11 11 111111 11111111 22222222222 111 111 22222222222 111111111 111111 111111 11111 1 1
lowQualScore : 5 4 77 4 22 5555555 33 2 1 66 888 1 777777 888 99 555 4444444444444 5 0 3 0 0 0 0 11 5 3 8888 0 0 77 0 0 2 0 33 1 8888888888888 5 111111111111 3 0 6 0 99 66 8 9 77 0 0 5 888 0 99 0 66 777 88 4 111111 99 55 33 4 4 2 999999 0 0 66666666 777 66 11111111111 4 99 555 4 222 22 11111111111 4 44 4 444444444 111111 666 3 3 444444 77 6666 3 9999999 1 2 2 2 2 888888 2 2 2 00000 2 2 2 8888888 555555 2 5555 55 2 9 0
lowQualScore : . . .. . .. ....... .. . . .. ... . ...... ... .. ... ............. . . . . . . . .. . . .... . . .. . . . . .. . ............. . ............ . . . . .. .. . . .. . . . ... . .. . .. ... .. . ...... .. .. .. . . . ...... . . ........ ... .. ........... . .. ... . ... .. ........... . .. . ......... ...... ... . . ...... .. .... . ....... . . . . . ...... . . . ..... . . . ....... ...... . .... .. . . .
lowQualScore : 7 0 99 3 33 9999999 00 0 0 77 111 0 111111 666 77 777 0000000000000 4 0 2 0 0 0 6 00 5 2 8888 0 0 00 0 0 5 0 88 0 5555555555555 5 222222222222 2 0 5 0 22 11 4 0 99 1 0 6 888 2 55 1 11 888 33 0 666666 44 00 55 0 0 3 000000 6 8 77777777 888 11 11111111111 4 00 666 4 222 11 11111111111 4 88 0 333333333 111111 444 1 1 222222 33 5555 1 3333333 1 9 9 9 7 555555 7 7 7 33333 7 5 4 6666666 888888 5 3333 99 5 5 0
consensus : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG-AAA-TT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
Reference ( family-3950 ) : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG-AAAATT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|1 : GGTAA-GCTACACATTATCC--ATCAAATCAAT--ATGATATATTAATA-TCAGA-TGAAATTTACATTGATTTTCGTGAAATATTTTTTAA-TCTAGTCAAAAGTCAATGACACTAAACCAAAAGGAAAAAAAGTCAACAAATTCATTTTCAATGGACGAGGGAGTTCA-TTACCC-ACTTTTTGTTGCGAAATAATCATTATTCAGACCGCAGTTTAGATTGA--CACATTAAAAAGAAAAAGATGAACTATGGTTGGTTA-CATT-GAATTAAAGTCTGTGC---GACAAAGCGTATGAAACCACGTCCAAAAATAGATCATTTGAGTTGGGGCGTTACAAA-CACGAACTAATTA-GATATTTTT-GAGGCCGAA----TCAGATTTCTATATCAAT-GTAAAACTTACTGAAATGTACCTCCTGAAATGTGT--GAACTGATATTTTTTGAATTTCTTTTATATCAATATAGATTCGACACGACTTAAAAATATATAATCGAATAAAATCTAAAATAAAGAATAAAATAAAGAATAAAATGAAACACTACTCTGCGATAAATTCCTAAAC-TTGGTGTTACAGTAAACATACAGGACTTTGAGAGCGATTCCCGTTGTAGTTATTCTACATTTATCTACTATAAAAAAAAATAATACCTTCA-----AA-ATATTGTACTAGACC-AAAT--ACTGTGAAATTTAATG-AAA-TT---ATGTCGACTAGTAATACATGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTA--AAAAAGATA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TTACT--TT---TCTGTTGT--A-----------CATTT-TATG--T---ATATT---TCATCTATA-----------TA-TTTCATTAGTTTTA-TTTGCATA--------------------------CCTCTG-AC-GTTATTAAT--AT----TTG-TACT------TAAAAATGTA-A-C-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-CTTGA----GA--GAA-TAAATT
gi|10 : AATATAATA-AAACTTGATATGTCAATCAGAAATAAAAG----AAA--ATA---TTT-----------------------TTTA--TTTT--AAAGTG-T--------------------TCTTTTAAATACATAA-GTAT----------TA------A-----------CAATT-TTTGG-T---ATA-TGCTTCATAAATA------------A-TGATATTG--TTCA-TTTCCATACT-T------ATGTAA----ATT---CCTCTG-AT-GT------T--AC----GTA-TATC------TATACATGAA-A-C-TTC-TG-CA---TT-G-TA-CCTC-----A-T-GTTCCACTTT---C---AC-C----GTGG-TTTGA----GC--GAA-TAAA-ATGAATga
gi|11 : TTTACCTGATATAAGAAAA--GAATAC-TTAAGCGCTGA-ATATTGTACTAGACC-AAAT--GTAATGGAATT-AATG-ACA-TT---ATGTCAACCA---ATAC---TGCTAAA--ATC---TTTAA--AAA-CTTT-G----CATGTTTTA--TTCT--AAAG-G-TA-TGTGAATT--A-ATCTGTCCTCCTTAGCATAAAA-
gi|12 : GTTCTTTGTTTTC-TTTACATACA-TGTACCTACATAC----ACT---CTTCTG-AT-GT------T--AT----TTG-TACT------TATAAATGTA-A-C-ATT-TG-AA---TT-G-TG-TCTC-----A-T-ATACCAATAT---G---AT-T----GTGG-TTTGA----GA--GAA-TGAA-TTGAATTG-AATTGcttcacat
gi|13 : gAAAGCTACACATTATTTTTATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTA-AT-C-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACGaa
gi|14 : ggAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|15 : gggAAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----A-GCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|18 : ggCTG-ACCGT------TT-AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TATTT---TT-G-TACCCTC-----A-T-GTACCAACTT---A---AT-T----GT-G-TTTGA----GT--GAA--AAA--TGAATTGAAATTG
gi|19 : TCTG-AC-GT------T--AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TA-TT---TTTG-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GT--GAA-TAAA-TTGAATTGAAATTGaggtt
gi|2 : aGGTAAACATACACAATATTTT-ATCAAATT-ATTTAT-ATCTAT----A-TCGAAATGAC-TTTTCATTGATTTTCGTGAAAT-TTTTG-AA-A-TAGTCAAAAGGCAATGACACTAAAC--AGA--AAAAAAGGTCA-CAAA---AT---CAAT-GACGAGG-AGTTCAATTACCACATTTTTT-TAGCAAAATAATTATTATTCAGCC-GCAGTTTAGATTGAAC-ACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGCGAC-ACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-TGTGAACTATTTTTAATATTTTTTGAGGACGAACATCTCAAATTTCTATATCACTTGTAAAACGTACTAAAATCTACCTCCTTGAATATGTTAAAATTGATAATTTTTAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAA-TGAAACACTACTCTGCGATAAAT-CCTAAACTTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTG-AATTTAATG-AAAATT---ATGTCGACTAATAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTAT-TTTT--AAAATG-TA-TGAAAA----A-ATCGGCT-TCTTTAATACAAAA-TAACT--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-TA--TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGACTACA-T------ACAT-T----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----ATT-GTACCAACTT---A---GT-T----G-GG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGGa
gi|20 : -T------ACATAC----ACT---CTTCTG-AC-GT------C--AT----TTG-TATT------TATAAATGTA-A-C-TCT-TA-TT---GT-G-TG-CCTC-----A-T-GT-------------------------GG-TTTGA----GA--GAA-TAAA-TTGAACTGAAATTGatt
gi|24 : cc-TA-TA---CT-G-TG-CCTC-----A-T-GTACCGCTTT---C---AT-T----GTGG-TTTGAGTTTGAGCGAA-TAAA-ATGAA-TG-AAGTGaa
gi|25 : AAATACA-A-T-TCTATA-TTCTATT-G-CA-CCGC-----G-T-GTACCAA--T---A---AT--------GG-TTTGA----GA--GAA-TAAATT
gi|27 : CAATTTATATTGA--CACATTCAA--GAAAAAGATGAACTATGGTTGGTa
gi|3 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTTCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---ACATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|4 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|5 : AAAAAA--GAATACCTTCAGCAGAA---TATTGTACTAGACC-AAGT--ACTGTGAAATTTAATG-AAATTT---ATGTGTACTAGTAA------TATTACA--AAA---CTTAAGAAAA-CTGT-G----TATCCTTTA--TTTCA-AAAATA-TATTGAAAATTATA-GTCTGTTTTCTTT--T----------TC--TA---TTAATTGTAAA-----------CATTT-TATG--T---ATA-T---TCATG-ATA-----------TATTTTTATTTATTTCA-TTTGCATACC-T------ACATATTATGACT---CTTCTG-AC-GT------T--AT----TTG-TACT------AATAAATGTA-ACT-TTT-TG-TA---TT-G-TA-CCTCGATCAA-T-GTACC
gi|5 : -GTACCAAATT---A---GT-TCAAAGTGG-TTTGA----GA--GAA-TAAA-TTGAATTG-AAtcaaatatgtttcaatgtgtctatcgtaccaaattagttcaaagtggtttgagagaataaattgaattgaaaattgagatt
gi|6 : aaaaaagaataccttcagcagaatattgtactagaccaagtactgtgaaatttaatgaaatttatgtgtactagtaatattacaaaacttaagaaaactgtgtatcctttatttcaaaaatatattgaaaattatagtctgttttctttttctattaattgtaaacattttatgtatattcatgatatatttttatttatttcatttgcatacctacatattatgactcttctgacgttatttgtactaataaatgtaactttttgtattgtacctcgatcaatgtacctcaaatatgtttcaatgtgtctatcCAGCGCAAATAT--TGTACAAGACC-AAATTTATTATGAAATTTAATG-AAC-TT---ATGTCCACTTGTAATAC-----CCAAACCAAC---TTTAAG-AAAACTGTTG----TAT-CTTTA--TTTTC-AAAATA-TA-TAACCA----CTGTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTCC--G-----------TATTTACACAT-TGCAATA-T---TTATGTATGTATAGATATACTA-TATTATTGATTTTACTTTGC-TACCTT------ACACTT----CCT---CCTCTGTCC-GTGGA---T--AC----CTATTATG------TTTAACTAC----T-TTC-CA-TC---CT-G-TA-CCTCCG---A-T-GTACCAACTTCGCAT--ATCT----GTGGTTTTGA----GCT-GAACTAAATTGAAATTG-AACTaattgagatt
gi|7 : AACTT---A---AT-T----GTGG-TTTGA----GA---AA-TAAA-TTGAATTG-
gi|8 : attttaaAA-CTGT------TAT-CTTTA--TCT---AAAATA-TA-TAACAC----T-GTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTGT--ATTTACACTTGGCATAT-TATGTATTGGATA-G---CCATTTATA-----------TA-TATTATGA--TTTA-CTTGCATAC--T------ACATTC----ACT---CCT-TG-TC-GT------TGGATACCATTA-TTGT------TTTAACTA-G-A-T-T-T-TA------TT-GCTA-CCTC-----A-TCGTACC-ACTT---GCATAT-T----GTGG-TTTGA----GT--GAA--AAA-TTGAATTG-AATTtcggccgaattgacgtacaccctggtaccacaatatgtttgcacatctaaatgcaagaagcatcccggcaaaattgttcaaacttcggacaaaagcacttcgtcgatgacatcgctgtatccctaggatcgaagaactttccggtgcccagcctaagattgagaacaaagccacaaaatcgaaattcacctattctaagctgatgtcgaaaatatatttttttaattaaaaaaacggcaaattaattcttagttctaacgatggtgaaagtaaagaata
gi|9 : TAAA--AAAAGTCTTAA--AAA-CTGT-AGGCCTAT-GTTTA--TTTTGAAAAAT--TA-TGATAC----T-GTCTGTCCTCCTTGAT----------TC--CTAGATTTACTGT--A-----------CAT-------T-T---ACA-T---TT---------------------TGTCGT--GTCTT--TTT--ATACA-C------ATTTGT----ATTGTGCCTCTG-AC---------T--AG----TTT-TATTAATTAATATACATGTACA-TATGT-TA-CTA--TT-G-TA-CCTC-----T-T-GTACAAA--T---A---A--------TGG-TTTGA----GG--GAA-TAAACTCAAATtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCCCCTTTCCTATTATCAGATGATGTCGAGCAATTTCTTTTTTTTGTTGATAAAAACTGCAAATTACGATATATTAGTTCTGAAAAATGGTGCAAGGAAAGAATAA
Unaligned ( gi|17 ): CTTCACCTACATGTATTCTCAGCTGATATTGTGCTTTTTTTTTTCGTCGATAAAAATGGCAAATTGCGATATATTAGTTCTGAAAATGGTGAAAGTCAAGAATAAA
Unaligned ( gi|21 ): GTTTATTTTCATACCTAAATACATTCTTTTATTAATGCATGGAATTTCGTATTCCATTTCATTGTGATTTGAGCAAATAAAATGTGTG
Unaligned ( gi|22 ): CATTACCAGCTGATGTTGAGCATGTTTTTTCGTGGAGAAAAATGACGATATATGTGGTAAAAGTAAAGAATAAA
Unaligned ( gi|23 ): TTCTCAGCTGATATTGAGCAATTTTTTTCGTCGATAAAAATGACAAATTGCTTAAAATGTCAAGAATGAAC
Unaligned ( gi|26 ): ACCTATTTTCAGCTTTGATATTGAGCATTATTTTCGTCGATAAAAA
Alignments
lowQualScore : 1111111 11 1 111 111111 11 111 3333333333333 1 1 1 1 1 1 11 1 1111 1 1 11 1 1 1 11 4444444444444 1 555555555555 1 1 1 11 1111 11 11 11 11111111 11111111 22222222222 111 111 22222222222 111111111 111111 111111 11111 1 1
lowQualScore : 5 4 77 4 22 5555555 33 2 1 66 888 1 777777 888 99 555 4444444444444 5 0 3 0 0 0 0 11 5 3 8888 0 0 77 0 0 2 0 33 1 8888888888888 5 111111111111 3 0 6 0 99 66 8 9 77 0 88 5 0000 0 99 0 66 777 22 4 8888 99 55 33 4 4 88888888 0 0 66666666 777 66 11111111111 4 99 555 4 222 22 11111111111 4 44 4 444444444 111111 666 3 3 444444 77 6666 3 9999999 1 2 2 2 2 888888 2 2 2 00000 2 2 2 8888888 555555 2 5555 55 2 9 0
lowQualScore : . . .. . .. ....... .. . . .. ... . ...... ... .. ... ............. . . . . . . . .. . . .... . . .. . . . . .. . ............. . ............ . . . . .. .. . . .. . .. . .... . .. . .. ... .. . .... .. .. .. . . ........ . . ........ ... .. ........... . .. ... . ... .. ........... . .. . ......... ...... ... . . ...... .. .... . ....... . . . . . ...... . . . ..... . . . ....... ...... . .... .. . . .
lowQualScore : 7 0 99 3 33 9999999 00 0 0 77 111 0 111111 666 77 777 0000000000000 4 0 2 0 0 0 6 00 5 2 8888 0 0 00 0 0 5 0 88 0 5555555555555 5 222222222222 2 0 5 0 22 11 4 0 99 1 88 0 6666 2 55 1 11 888 88 0 5555 44 00 55 0 0 77777777 6 8 77777777 888 11 11111111111 4 00 666 4 222 11 11111111111 4 88 0 333333333 111111 444 1 1 222222 33 5555 1 3333333 1 9 9 9 7 555555 7 7 7 33333 7 5 4 6666666 888888 5 3333 99 5 5 0
consensus : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGA-AAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
Reference ( family-3950 ) : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG--AAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|1 : GGTAA-GCTACACATTATCC--ATCAAATCAAT--ATGATATATTAATA-TCAGA-TGAAATTTACATTGATTTTCGTGAAATATTTTTTAA-TCTAGTCAAAAGTCAATGACACTAAACCAAAAGGAAAAAAAGTCAACAAATTCATTTTCAATGGACGAGGGAGTTCA-TTACCC-ACTTTTTGTTGCGAAATAATCATTATTCAGACCGCAGTTTAGATTGA--CACATTAAAAAGAAAAAGATGAACTATGGTTGGTTA-CATT-GAATTAAAGTCTGTGC---GACAAAGCGTATGAAACCACGTCCAAAAATAGATCATTTGAGTTGGGGCGTTACAAA-CACGAACTAATTA-GATATTTTT-GAGGCCGAA----TCAGATTTCTATATCAAT-GTAAAACTTACTGAAATGTACCTCCTGAAATGTGT--GAACTGATATTTTTTGAATTTCTTTTATATCAATATAGATTCGACACGACTTAAAAATATATAATCGAATAAAATCTAAAATAAAGAATAAAATAAAGAATAAAATGAAACACTACTCTGCGATAAATTCCTAAAC-TTGGTGTTACAGTAAACATACAGGACTTTGAGAGCGATTCCCGTTGTAGTTATTCTACATTTATCTACTATAAAAAAAAATAATACCTTCA-----AA-ATATTGTACTAGACC-AAAT--ACTGTGAAATTTAATG--AAA-TT----ATGTCGACTAGTAATACATGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTA--AAAAAGATA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TTACT--TT---TCTGTTGT--A-----------CATTT-TATG--T---ATATT---TCATCTATA-----------TA-TTTCATTAGTTTTA-TTTGCATA--------------------------CCTCTG-AC-GTTATTAAT--AT----TTG-TACT------TAAAAATGTA-A-C-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-CTTGA----GA--GAA-TAAATT
gi|10 : AATATAATA--AAA-CTTGATATGTCAATCAGAAATAAAAG----AAA--ATA---TTT----------------------TTTA--TTTT--AAAGTG-T---------------------TCTTTTAAATACATAA-GTAT----------TA------A-----------CAATT-TTTGG-T---ATA-TGCTTCATAAATA------------A-TGATATTG--TTCA-TTTCCATACT-T------ATGTAA----ATT---CCTCTG-AT-GT------T--AC----GTA-TATC------TATACATGAA-A-C-TTC-TG-CA---TT-G-TA-CCTC-----A-T-GTTCCACTTT---C---AC-C----GTGG-TTTGA----GC--GAA-TAAA-ATGAATga
gi|11 : TTTACCTGATATAAGAAAA--GAATAC-TTAAGCGCTGA-ATATTGTACTAGACC-AAAT--GTAATGGAATT-AATG--ACA-TT----ATGTCAACCA---ATAC---TGCTAAA--ATC---TTTAA--AAACTT-TG----CATGTTTTA--TTCT--AAAG-G-TA-TGTGAATT--A--ATCTGTCCTCCTTAGCATAAAA-
gi|12 : GTTCTTTGTTTTC-TTTACATACA-TGTACCTACATAC----ACT---CTTCTG-AT-GT------T--AT----TTG-TACT------TATAAATGTA-A-C-ATT-TG-AA---TT-G-TG-TCTC-----A-T-ATACCAATAT---G---AT-T----GTGG-TTTGA----GA--GAA-TGAA-TTGAATTG-AATTGcttcacat
gi|13 : gAAAGCTACACATTATTTTTATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTA-AT-C-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACGaa
gi|14 : ggAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|15 : gggAAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----A-GCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|18 : ggCTG-ACCGT------TT-AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TATTT---TT-G-TACCCTC-----A-T-GTACCAACTT---A---AT-T----GT-G-TTTGA----GT--GAA--AAA--TGAATTGAAATTG
gi|19 : TCTG-AC-GT------T--AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TA-TT---TTTG-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GT--GAA-TAAA-TTGAATTGAAATTGaggtt
gi|2 : aGGTAAACATACACAATATTTT-ATCAAATT-ATTTAT-ATCTAT----A-TCGAAATGAC-TTTTCATTGATTTTCGTGAAAT-TTTTG-AA-A-TAGTCAAAAGGCAATGACACTAAAC--AGA--AAAAAAGGTCA-CAAA---AT---CAAT-GACGAGG-AGTTCAATTACCACATTTTTT-TAGCAAAATAATTATTATTCAGCC-GCAGTTTAGATTGAAC-ACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGCGAC-ACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-TGTGAACTATTTTTAATATTTTTTGAGGACGAACATCTCAAATTTCTATATCACTTGTAAAACGTACTAAAATCTACCTCCTTGAATATGTTAAAATTGATAATTTTTAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAA-TGAAACACTACTCTGCGATAAAT-CCTAAACTTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTG-AATTTAATGA-AAA-TT----ATGTCGACTAATAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-TTTTAT-TTTT--AAAATG-TA-TGAAAA----A--ATCGGCT-TCTTTAATACAAAA-TAACT--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-TA--TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGACTACA-T------ACAT-T----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----ATT-GTACCAACTT---A---GT-T----G-GG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGGa
gi|20 : -T------ACATAC----ACT---CTTCTG-AC-GT------C--AT----TTG-TATT------TATAAATGTA-A-C-TCT-TA-TT---GT-G-TG-CCTC-----A-T-GT-------------------------GG-TTTGA----GA--GAA-TAAA-TTGAACTGAAATTGatt
gi|24 : cc-TA-TA---CT-G-TG-CCTC-----A-T-GTACCGCTTT---C---AT-T----GTGG-TTTGAGTTTGAGCGAA-TAAA-ATGAA-TG-AAGTGaa
gi|25 : AAATACA-A-T-TCTATA-TTCTATT-G-CA-CCGC-----G-T-GTACCAA--T---A---AT--------GG-TTTGA----GA--GAA-TAAATT
gi|27 : CAATTTATATTGA--CACATTCAA--GAAAAAGATGAACTATGGTTGGTa
gi|3 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTTCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A--ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---ACATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|4 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A--ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|5 : AAAAAA--GAATACCTTCAGCAGAA---TATTGTACTAGACC-AAGT--ACTGTGAAATTTAATG--AAATTT----ATGTGTACTAGTAA------TATTACA--AAA---CTTAAGAAAACTG-TG----TATCCTTTA--TTTCA-AAAATA-TATTGAAAATTATA--GTCTGTTTTCTTT--T----------TC--TA---TTAATTGTAAA-----------CATTT-TATG--T---ATA-T---TCATG-ATA-----------TATTTTTATTTATTTCA-TTTGCATACC-T------ACATATTATGACT---CTTCTG-AC-GT------T--AT----TTG-TACT------AATAAATGTA-ACT-TTT-TG-TA---TT-G-TA-CCTCGATCAA-T-GTACC
gi|5 : -GTACCAAATT---A---GT-TCAAAGTGG-TTTGA----GA--GAA-TAAA-TTGAATTG-AAtcaaatatgtttcaatgtgtctatcgtaccaaattagttcaaagtggtttgagagaataaattgaattgaaaattgagatt
gi|6 : aaaaaagaataccttcagcagaatattgtactagaccaagtactgtgaaatttaatgaaatttatgtgtactagtaatattacaaaacttaagaaaactgtgtatcctttatttcaaaaatatattgaaaattatagtctgttttctttttctattaattgtaaacattttatgtatattcatgatatatttttatttatttcatttgcatacctacatattatgactcttctgacgttatttgtactaataaatgtaactttttgtattgtacctcgatcaatgtacctcaaatatgtttcaatgtgtctatcCAGCGCAAATAT--TGTACAAGACC-AAATTTATTATGAAATTTAATG--AAC-TT----ATGTCCACTTGTAATAC-----CCAAACCAAC---TTTAAGAAAACTGTTG----TAT-CTTTA--TTTTC-AAAATA-TA-T-AACC----ACTGTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTCC--G-----------TATTTACACAT-TGCAATA-T---TTATGTATGTATAGATATACTA-TATTATTGATTTTACTTTGC-TACCTT------ACACTT----CCT---CCTCTGTCC-GTGGA---T--AC----CTATTATG------TTTAACTAC----T-TTC-CA-TC---CT-G-TA-CCTCCG---A-T-GTACCAACTTCGCAT--ATCT----GTGGTTTTGA----GCT-GAACTAAATTGAAATTG-AACTaattgagatt
gi|7 : AACTT---A---AT-T----GTGG-TTTGA----GA---AA-TAAA-TTGAATTG-
gi|8 : attttaaAACTG-T-----TAT-CTTTA--TCT---AAAATA-TA-TAACAC----T--GTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTGT--ATTTACACTTGGCATAT-TATGTATTGGATA-G---CCATTTATA-----------TA-TATTATGA--TTTA-CTTGCATAC--T------ACATTC----ACT---CCT-TG-TC-GT------TGGATACCATTA-TTGT------TTTAACTA-G-A-T-T-T-TA------TT-GCTA-CCTC-----A-TCGTACC-ACTT---GCATAT-T----GTGG-TTTGA----GT--GAA--AAA-TTGAATTG-AATTtcggccgaattgacgtacaccctggtaccacaatatgtttgcacatctaaatgcaagaagcatcccggcaaaattgttcaaacttcggacaaaagcacttcgtcgatgacatcgctgtatccctaggatcgaagaactttccggtgcccagcctaagattgagaacaaagccacaaaatcgaaattcacctattctaagctgatgtcgaaaatatatttttttaattaaaaaaacggcaaattaattcttagttctaacgatggtgaaagtaaagaata
gi|9 : TAAA--AAAAGTCTTAA--AAACTG-TAGGCCTAT-GTTTA--TTTTGAAAAAT--TA-TGATAC----T--GTCTGTCCTCCTTGAT----------TC--CTAGATTTACTGT--A-----------CAT-------T-T---ACA-T---TT---------------------TGTCGT--GTCTT--TTT--ATACA-C------ATTTGT----ATTGTGCCTCTG-AC---------T--AG----TTT-TATTAATTAATATACATGTACA-TATGT-TA-CTA--TT-G-TA-CCTC-----T-T-GTACAAA--T---A---A--------TGG-TTTGA----GG--GAA-TAAACTCAAATtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCCCCTTTCCTATTATCAGATGATGTCGAGCAATTTCTTTTTTTTGTTGATAAAAACTGCAAATTACGATATATTAGTTCTGAAAAATGGTGCAAGGAAAGAATAA
Unaligned ( gi|17 ): CTTCACCTACATGTATTCTCAGCTGATATTGTGCTTTTTTTTTTCGTCGATAAAAATGGCAAATTGCGATATATTAGTTCTGAAAATGGTGAAAGTCAAGAATAAA
Unaligned ( gi|21 ): GTTTATTTTCATACCTAAATACATTCTTTTATTAATGCATGGAATTTCGTATTCCATTTCATTGTGATTTGAGCAAATAAAATGTGTG
Unaligned ( gi|22 ): CATTACCAGCTGATGTTGAGCATGTTTTTTCGTGGAGAAAAATGACGATATATGTGGTAAAAGTAAAGAATAAA
Unaligned ( gi|23 ): TTCTCAGCTGATATTGAGCAATTTTTTTCGTCGATAAAAATGACAAATTGCTTAAAATGTCAAGAATGAAC
Unaligned ( gi|26 ): ACCTATTTTCAGCTTTGATATTGAGCATTATTTTCGTCGATAAAAA
Alignments
lowQualScore : 1111111 11 1 111 111111 11 111 3333333333333 1 1 1 1 1 1 11 1 1111 1 1 11 1 1 1 11 4444444444444 1 555555555555 1 1 1 1 1 111111 11 11 111111 11111111 22222222222 111 111 22222222222 111111111 111111 111111 11111 1 1
lowQualScore : 5 4 77 4 22 5555555 33 2 1 66 888 1 777777 888 99 555 4444444444444 5 0 3 0 0 0 0 11 5 3 8888 0 0 77 0 0 2 0 33 1 8888888888888 5 111111111111 3 0 6 0 99 66 8 9 77 0 0 5 888 0 99 0 66 777 88 4 111111 99 55 33 4 4 2 999999 0 0 66666666 777 66 11111111111 4 99 555 4 222 22 11111111111 4 44 4 444444444 111111 666 3 3 444444 77 6666 3 9999999 1 2 2 2 2 888888 2 2 2 00000 2 2 2 8888888 555555 2 5555 55 2 9 0
lowQualScore : . . .. . .. ....... .. . . .. ... . ...... ... .. ... ............. . . . . . . . .. . . .... . . .. . . . . .. . ............. . ............ . . . . .. .. . . .. . . . ... . .. . .. ... .. . ...... .. .. .. . . . ...... . . ........ ... .. ........... . .. ... . ... .. ........... . .. . ......... ...... ... . . ...... .. .... . ....... . . . . . ...... . . . ..... . . . ....... ...... . .... .. . . .
lowQualScore : 7 0 99 3 33 9999999 00 0 0 77 111 0 111111 666 77 777 0000000000000 4 0 2 0 0 0 6 00 5 2 8888 0 0 00 0 0 5 0 88 0 5555555555555 5 222222222222 2 0 5 0 22 11 4 0 99 1 0 6 888 2 55 1 11 888 33 0 666666 44 00 55 0 0 3 000000 6 8 77777777 888 11 11111111111 4 00 666 4 222 11 11111111111 4 88 0 333333333 111111 444 1 1 222222 33 5555 1 3333333 1 9 9 9 7 555555 7 7 7 33333 7 5 4 6666666 888888 5 3333 99 5 5 0
consensus : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG-AAA-TT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
Reference ( family-3950 ) : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG-AAAATT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|1 : GGTAA-GCTACACATTATCC--ATCAAATCAAT--ATGATATATTAATA-TCAGA-TGAAATTTACATTGATTTTCGTGAAATATTTTTTAA-TCTAGTCAAAAGTCAATGACACTAAACCAAAAGGAAAAAAAGTCAACAAATTCATTTTCAATGGACGAGGGAGTTCA-TTACCC-ACTTTTTGTTGCGAAATAATCATTATTCAGACCGCAGTTTAGATTGA--CACATTAAAAAGAAAAAGATGAACTATGGTTGGTTA-CATT-GAATTAAAGTCTGTGC---GACAAAGCGTATGAAACCACGTCCAAAAATAGATCATTTGAGTTGGGGCGTTACAAA-CACGAACTAATTA-GATATTTTT-GAGGCCGAA----TCAGATTTCTATATCAAT-GTAAAACTTACTGAAATGTACCTCCTGAAATGTGT--GAACTGATATTTTTTGAATTTCTTTTATATCAATATAGATTCGACACGACTTAAAAATATATAATCGAATAAAATCTAAAATAAAGAATAAAATAAAGAATAAAATGAAACACTACTCTGCGATAAATTCCTAAAC-TTGGTGTTACAGTAAACATACAGGACTTTGAGAGCGATTCCCGTTGTAGTTATTCTACATTTATCTACTATAAAAAAAAATAATACCTTCA-----AA-ATATTGTACTAGACC-AAAT--ACTGTGAAATTTAATG-AAA-TT---ATGTCGACTAGTAATACATGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTA--AAAAAGATA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TTACT--TT---TCTGTTGT--A-----------CATTT-TATG--T---ATATT---TCATCTATA-----------TA-TTTCATTAGTTTTA-TTTGCATA--------------------------CCTCTG-AC-GTTATTAAT--AT----TTG-TACT------TAAAAATGTA-A-C-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-CTTGA----GA--GAA-TAAATT
gi|10 : AATATAATA-AAACTTGATATGTCAATCAGAAATAAAAG----AAA--ATA---TTT-----------------------TTTA--TTTT--AAAGTG-T--------------------TCTTTTAAATACATAA-GTAT----------TA------A-----------CAATT-TTTGG-T---ATA-TGCTTCATAAATA------------A-TGATATTG--TTCA-TTTCCATACT-T------ATGTAA----ATT---CCTCTG-AT-GT------T--AC----GTA-TATC------TATACATGAA-A-C-TTC-TG-CA---TT-G-TA-CCTC-----A-T-GTTCCACTTT---C---AC-C----GTGG-TTTGA----GC--GAA-TAAA-ATGAATga
gi|11 : TTTACCTGATATAAGAAAA--GAATAC-TTAAGCGCTGA-ATATTGTACTAGACC-AAAT--GTAATGGAATT-AATG-ACA-TT---ATGTCAACCA---ATAC---TGCTAAA--ATC---TTTAA--AAA-CTTT-G----CATGTTTTA--TTCT--AAAG-G-TA-TGTGAATT--A-ATCTGTCCTCCTTAGCATAAAA-
gi|12 : GTTCTTTGTTTTC-TTTACATACA-TGTACCTACATAC----ACT---CTTCTG-AT-GT------T--AT----TTG-TACT------TATAAATGTA-A-C-ATT-TG-AA---TT-G-TG-TCTC-----A-T-ATACCAATAT---G---AT-T----GTGG-TTTGA----GA--GAA-TGAA-TTGAATTG-AATTGcttcacat
gi|13 : gAAAGCTACACATTATTTTTATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTA-AT-C-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACGaa
gi|14 : ggAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|15 : gggAAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----A-GCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|18 : ggCTG-ACCGT------TT-AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TATTT---TT-G-TACCCTC-----A-T-GTACCAACTT---A---AT-T----GT-G-TTTGA----GT--GAA--AAA--TGAATTGAAATTG
gi|19 : TCTG-AC-GT------T--AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TA-TT---TTTG-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GT--GAA-TAAA-TTGAATTGAAATTGaggtt
gi|2 : aGGTAAACATACACAATATTTT-ATCAAATT-ATTTAT-ATCTAT----A-TCGAAATGAC-TTTTCATTGATTTTCGTGAAAT-TTTTG-AA-A-TAGTCAAAAGGCAATGACACTAAAC--AGA--AAAAAAGGTCA-CAAA---AT---CAAT-GACGAGG-AGTTCAATTACCACATTTTTT-TAGCAAAATAATTATTATTCAGCC-GCAGTTTAGATTGAAC-ACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGCGAC-ACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-TGTGAACTATTTTTAATATTTTTTGAGGACGAACATCTCAAATTTCTATATCACTTGTAAAACGTACTAAAATCTACCTCCTTGAATATGTTAAAATTGATAATTTTTAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAA-TGAAACACTACTCTGCGATAAAT-CCTAAACTTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTG-AATTTAATG-AAAATT---ATGTCGACTAATAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTAT-TTTT--AAAATG-TA-TGAAAA----A-ATCGGCT-TCTTTAATACAAAA-TAACT--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-TA--TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGACTACA-T------ACAT-T----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----ATT-GTACCAACTT---A---GT-T----G-GG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGGa
gi|20 : -T------ACATAC----ACT---CTTCTG-AC-GT------C--AT----TTG-TATT------TATAAATGTA-A-C-TCT-TA-TT---GT-G-TG-CCTC-----A-T-GT-------------------------GG-TTTGA----GA--GAA-TAAA-TTGAACTGAAATTGatt
gi|24 : cc-TA-TA---CT-G-TG-CCTC-----A-T-GTACCGCTTT---C---AT-T----GTGG-TTTGAGTTTGAGCGAA-TAAA-ATGAA-TG-AAGTGaa
gi|25 : AAATACA-A-T-TCTATA-TTCTATT-G-CA-CCGC-----G-T-GTACCAA--T---A---AT--------GG-TTTGA----GA--GAA-TAAATT
gi|27 : CAATTTATATTGA--CACATTCAA--GAAAAAGATGAACTATGGTTGGTa
gi|3 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTTCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---ACATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|4 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|5 : AAAAAA--GAATACCTTCAGCAGAA---TATTGTACTAGACC-AAGT--ACTGTGAAATTTAATG-AAATTT---ATGTGTACTAGTAA------TATTACA--AAA---CTTAAGAAAA-CTGT-G----TATCCTTTA--TTTCA-AAAATA-TATTGAAAATTATA-GTCTGTTTTCTTT--T----------TC--TA---TTAATTGTAAA-----------CATTT-TATG--T---ATA-T---TCATG-ATA-----------TATTTTTATTTATTTCA-TTTGCATACC-T------ACATATTATGACT---CTTCTG-AC-GT------T--AT----TTG-TACT------AATAAATGTA-ACT-TTT-TG-TA---TT-G-TA-CCTCGATCAA-T-GTACC
gi|5 : -GTACCAAATT---A---GT-TCAAAGTGG-TTTGA----GA--GAA-TAAA-TTGAATTG-AAtcaaatatgtttcaatgtgtctatcgtaccaaattagttcaaagtggtttgagagaataaattgaattgaaaattgagatt
gi|6 : aaaaaagaataccttcagcagaatattgtactagaccaagtactgtgaaatttaatgaaatttatgtgtactagtaatattacaaaacttaagaaaactgtgtatcctttatttcaaaaatatattgaaaattatagtctgttttctttttctattaattgtaaacattttatgtatattcatgatatatttttatttatttcatttgcatacctacatattatgactcttctgacgttatttgtactaataaatgtaactttttgtattgtacctcgatcaatgtacctcaaatatgtttcaatgtgtctatcCAGCGCAAATAT--TGTACAAGACC-AAATTTATTATGAAATTTAATG-AAC-TT---ATGTCCACTTGTAATAC-----CCAAACCAAC---TTTAAG-AAAACTGTTG----TAT-CTTTA--TTTTC-AAAATA-TA-TAACCA----CTGTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTCC--G-----------TATTTACACAT-TGCAATA-T---TTATGTATGTATAGATATACTA-TATTATTGATTTTACTTTGC-TACCTT------ACACTT----CCT---CCTCTGTCC-GTGGA---T--AC----CTATTATG------TTTAACTAC----T-TTC-CA-TC---CT-G-TA-CCTCCG---A-T-GTACCAACTTCGCAT--ATCT----GTGGTTTTGA----GCT-GAACTAAATTGAAATTG-AACTaattgagatt
gi|7 : AACTT---A---AT-T----GTGG-TTTGA----GA---AA-TAAA-TTGAATTG-
gi|8 : attttaaAA-CTGT------TAT-CTTTA--TCT---AAAATA-TA-TAACAC----T-GTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTGT--ATTTACACTTGGCATAT-TATGTATTGGATA-G---CCATTTATA-----------TA-TATTATGA--TTTA-CTTGCATAC--T------ACATTC----ACT---CCT-TG-TC-GT------TGGATACCATTA-TTGT------TTTAACTA-G-A-T-T-T-TA------TT-GCTA-CCTC-----A-TCGTACC-ACTT---GCATAT-T----GTGG-TTTGA----GT--GAA--AAA-TTGAATTG-AATTtcggccgaattgacgtacaccctggtaccacaatatgtttgcacatctaaatgcaagaagcatcccggcaaaattgttcaaacttcggacaaaagcacttcgtcgatgacatcgctgtatccctaggatcgaagaactttccggtgcccagcctaagattgagaacaaagccacaaaatcgaaattcacctattctaagctgatgtcgaaaatatatttttttaattaaaaaaacggcaaattaattcttagttctaacgatggtgaaagtaaagaata
gi|9 : TAAA--AAAAGTCTTAA--AAA-CTGT-AGGCCTAT-GTTTA--TTTTGAAAAAT--TA-TGATAC----T-GTCTGTCCTCCTTGAT----------TC--CTAGATTTACTGT--A-----------CAT-------T-T---ACA-T---TT---------------------TGTCGT--GTCTT--TTT--ATACA-C------ATTTGT----ATTGTGCCTCTG-AC---------T--AG----TTT-TATTAATTAATATACATGTACA-TATGT-TA-CTA--TT-G-TA-CCTC-----T-T-GTACAAA--T---A---A--------TGG-TTTGA----GG--GAA-TAAACTCAAATtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCCCCTTTCCTATTATCAGATGATGTCGAGCAATTTCTTTTTTTTGTTGATAAAAACTGCAAATTACGATATATTAGTTCTGAAAAATGGTGCAAGGAAAGAATAA
Unaligned ( gi|17 ): CTTCACCTACATGTATTCTCAGCTGATATTGTGCTTTTTTTTTTCGTCGATAAAAATGGCAAATTGCGATATATTAGTTCTGAAAATGGTGAAAGTCAAGAATAAA
Unaligned ( gi|21 ): GTTTATTTTCATACCTAAATACATTCTTTTATTAATGCATGGAATTTCGTATTCCATTTCATTGTGATTTGAGCAAATAAAATGTGTG
Unaligned ( gi|22 ): CATTACCAGCTGATGTTGAGCATGTTTTTTCGTGGAGAAAAATGACGATATATGTGGTAAAAGTAAAGAATAAA
Unaligned ( gi|23 ): TTCTCAGCTGATATTGAGCAATTTTTTTCGTCGATAAAAATGACAAATTGCTTAAAATGTCAAGAATGAAC
Unaligned ( gi|26 ): ACCTATTTTCAGCTTTGATATTGAGCATTATTTTCGTCGATAAAAA
Alignments
lowQualScore : 1111111 11 1 111 111111 11 111 3333333333333 1 1 1 1 1 1 11 1 1111 1 1 11 1 1 1 11 4444444444444 1 555555555555 1 1 1 11 1111 11 11 11 11111111 11111111 22222222222 111 111 22222222222 111111111 111111 111111 11111 1 1
lowQualScore : 5 4 77 4 22 5555555 33 2 1 66 888 1 777777 888 99 555 4444444444444 5 0 3 0 0 0 0 11 5 3 8888 0 0 77 0 0 2 0 33 1 8888888888888 5 111111111111 3 0 6 0 99 66 8 9 77 0 88 5 0000 0 99 0 66 777 22 4 8888 99 55 33 4 4 88888888 0 0 66666666 777 66 11111111111 4 99 555 4 222 22 11111111111 4 44 4 444444444 111111 666 3 3 444444 77 6666 3 9999999 1 2 2 2 2 888888 2 2 2 00000 2 2 2 8888888 555555 2 5555 55 2 9 0
lowQualScore : . . .. . .. ....... .. . . .. ... . ...... ... .. ... ............. . . . . . . . .. . . .... . . .. . . . . .. . ............. . ............ . . . . .. .. . . .. . .. . .... . .. . .. ... .. . .... .. .. .. . . ........ . . ........ ... .. ........... . .. ... . ... .. ........... . .. . ......... ...... ... . . ...... .. .... . ....... . . . . . ...... . . . ..... . . . ....... ...... . .... .. . . .
lowQualScore : 7 0 99 3 33 9999999 00 0 0 77 111 0 111111 666 77 777 0000000000000 4 0 2 0 0 0 6 00 5 2 8888 0 0 00 0 0 5 0 88 0 5555555555555 5 222222222222 2 0 5 0 22 11 4 0 99 1 88 0 6666 2 55 1 11 888 88 0 5555 44 00 55 0 0 77777777 6 8 77777777 888 11 11111111111 4 00 666 4 222 11 11111111111 4 88 0 333333333 111111 444 1 1 222222 33 5555 1 3333333 1 9 9 9 7 555555 7 7 7 33333 7 5 4 6666666 888888 5 3333 99 5 5 0
consensus : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGA-AAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
Reference ( family-3950 ) : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG--AAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|1 : GGTAA-GCTACACATTATCC--ATCAAATCAAT--ATGATATATTAATA-TCAGA-TGAAATTTACATTGATTTTCGTGAAATATTTTTTAA-TCTAGTCAAAAGTCAATGACACTAAACCAAAAGGAAAAAAAGTCAACAAATTCATTTTCAATGGACGAGGGAGTTCA-TTACCC-ACTTTTTGTTGCGAAATAATCATTATTCAGACCGCAGTTTAGATTGA--CACATTAAAAAGAAAAAGATGAACTATGGTTGGTTA-CATT-GAATTAAAGTCTGTGC---GACAAAGCGTATGAAACCACGTCCAAAAATAGATCATTTGAGTTGGGGCGTTACAAA-CACGAACTAATTA-GATATTTTT-GAGGCCGAA----TCAGATTTCTATATCAAT-GTAAAACTTACTGAAATGTACCTCCTGAAATGTGT--GAACTGATATTTTTTGAATTTCTTTTATATCAATATAGATTCGACACGACTTAAAAATATATAATCGAATAAAATCTAAAATAAAGAATAAAATAAAGAATAAAATGAAACACTACTCTGCGATAAATTCCTAAAC-TTGGTGTTACAGTAAACATACAGGACTTTGAGAGCGATTCCCGTTGTAGTTATTCTACATTTATCTACTATAAAAAAAAATAATACCTTCA-----AA-ATATTGTACTAGACC-AAAT--ACTGTGAAATTTAATG--AAA-TT----ATGTCGACTAGTAATACATGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTA--AAAAAGATA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TTACT--TT---TCTGTTGT--A-----------CATTT-TATG--T---ATATT---TCATCTATA-----------TA-TTTCATTAGTTTTA-TTTGCATA--------------------------CCTCTG-AC-GTTATTAAT--AT----TTG-TACT------TAAAAATGTA-A-C-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-CTTGA----GA--GAA-TAAATT
gi|10 : AATATAATA--AAA-CTTGATATGTCAATCAGAAATAAAAG----AAA--ATA---TTT----------------------TTTA--TTTT--AAAGTG-T---------------------TCTTTTAAATACATAA-GTAT----------TA------A-----------CAATT-TTTGG-T---ATA-TGCTTCATAAATA------------A-TGATATTG--TTCA-TTTCCATACT-T------ATGTAA----ATT---CCTCTG-AT-GT------T--AC----GTA-TATC------TATACATGAA-A-C-TTC-TG-CA---TT-G-TA-CCTC-----A-T-GTTCCACTTT---C---AC-C----GTGG-TTTGA----GC--GAA-TAAA-ATGAATga
gi|11 : TTTACCTGATATAAGAAAA--GAATAC-TTAAGCGCTGA-ATATTGTACTAGACC-AAAT--GTAATGGAATT-AATG--ACA-TT----ATGTCAACCA---ATAC---TGCTAAA--ATC---TTTAA--AAACTT-TG----CATGTTTTA--TTCT--AAAG-G-TA-TGTGAATT--A--ATCTGTCCTCCTTAGCATAAAA-
gi|12 : GTTCTTTGTTTTC-TTTACATACA-TGTACCTACATAC----ACT---CTTCTG-AT-GT------T--AT----TTG-TACT------TATAAATGTA-A-C-ATT-TG-AA---TT-G-TG-TCTC-----A-T-ATACCAATAT---G---AT-T----GTGG-TTTGA----GA--GAA-TGAA-TTGAATTG-AATTGcttcacat
gi|13 : gAAAGCTACACATTATTTTTATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTA-AT-C-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACGaa
gi|14 : ggAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----AGGCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|15 : gggAAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----A-GCGC-ATGAAATTTTCAATGACTTTCGTGAAATATTTTT-AATC-TAGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT------AT---CAATTGACG
gi|18 : ggCTG-ACCGT------TT-AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TATTT---TT-G-TACCCTC-----A-T-GTACCAACTT---A---AT-T----GT-G-TTTGA----GT--GAA--AAA--TGAATTGAAATTG
gi|19 : TCTG-AC-GT------T--AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TA-TT---TTTG-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GT--GAA-TAAA-TTGAATTGAAATTGaggtt
gi|2 : aGGTAAACATACACAATATTTT-ATCAAATT-ATTTAT-ATCTAT----A-TCGAAATGAC-TTTTCATTGATTTTCGTGAAAT-TTTTG-AA-A-TAGTCAAAAGGCAATGACACTAAAC--AGA--AAAAAAGGTCA-CAAA---AT---CAAT-GACGAGG-AGTTCAATTACCACATTTTTT-TAGCAAAATAATTATTATTCAGCC-GCAGTTTAGATTGAAC-ACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGCGAC-ACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-TGTGAACTATTTTTAATATTTTTTGAGGACGAACATCTCAAATTTCTATATCACTTGTAAAACGTACTAAAATCTACCTCCTTGAATATGTTAAAATTGATAATTTTTAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAA-TGAAACACTACTCTGCGATAAAT-CCTAAACTTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTG-AATTTAATGA-AAA-TT----ATGTCGACTAATAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-TTTTAT-TTTT--AAAATG-TA-TGAAAA----A--ATCGGCT-TCTTTAATACAAAA-TAACT--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-TA--TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGACTACA-T------ACAT-T----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----ATT-GTACCAACTT---A---GT-T----G-GG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGGa
gi|20 : -T------ACATAC----ACT---CTTCTG-AC-GT------C--AT----TTG-TATT------TATAAATGTA-A-C-TCT-TA-TT---GT-G-TG-CCTC-----A-T-GT-------------------------GG-TTTGA----GA--GAA-TAAA-TTGAACTGAAATTGatt
gi|24 : cc-TA-TA---CT-G-TG-CCTC-----A-T-GTACCGCTTT---C---AT-T----GTGG-TTTGAGTTTGAGCGAA-TAAA-ATGAA-TG-AAGTGaa
gi|25 : AAATACA-A-T-TCTATA-TTCTATT-G-CA-CCGC-----G-T-GTACCAA--T---A---AT--------GG-TTTGA----GA--GAA-TAAATT
gi|27 : CAATTTATATTGA--CACATTCAA--GAAAAAGATGAACTATGGTTGGTa
gi|3 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTTCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A--ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---ACATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|4 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTG-AA-A-TAGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAA---A----CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A--ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|5 : AAAAAA--GAATACCTTCAGCAGAA---TATTGTACTAGACC-AAGT--ACTGTGAAATTTAATG--AAATTT----ATGTGTACTAGTAA------TATTACA--AAA---CTTAAGAAAACTG-TG----TATCCTTTA--TTTCA-AAAATA-TATTGAAAATTATA--GTCTGTTTTCTTT--T----------TC--TA---TTAATTGTAAA-----------CATTT-TATG--T---ATA-T---TCATG-ATA-----------TATTTTTATTTATTTCA-TTTGCATACC-T------ACATATTATGACT---CTTCTG-AC-GT------T--AT----TTG-TACT------AATAAATGTA-ACT-TTT-TG-TA---TT-G-TA-CCTCGATCAA-T-GTACC
gi|5 : -GTACCAAATT---A---GT-TCAAAGTGG-TTTGA----GA--GAA-TAAA-TTGAATTG-AAtcaaatatgtttcaatgtgtctatcgtaccaaattagttcaaagtggtttgagagaataaattgaattgaaaattgagatt
gi|6 : aaaaaagaataccttcagcagaatattgtactagaccaagtactgtgaaatttaatgaaatttatgtgtactagtaatattacaaaacttaagaaaactgtgtatcctttatttcaaaaatatattgaaaattatagtctgttttctttttctattaattgtaaacattttatgtatattcatgatatatttttatttatttcatttgcatacctacatattatgactcttctgacgttatttgtactaataaatgtaactttttgtattgtacctcgatcaatgtacctcaaatatgtttcaatgtgtctatcCAGCGCAAATAT--TGTACAAGACC-AAATTTATTATGAAATTTAATG--AAC-TT----ATGTCCACTTGTAATAC-----CCAAACCAAC---TTTAAGAAAACTGTTG----TAT-CTTTA--TTTTC-AAAATA-TA-T-AACC----ACTGTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTCC--G-----------TATTTACACAT-TGCAATA-T---TTATGTATGTATAGATATACTA-TATTATTGATTTTACTTTGC-TACCTT------ACACTT----CCT---CCTCTGTCC-GTGGA---T--AC----CTATTATG------TTTAACTAC----T-TTC-CA-TC---CT-G-TA-CCTCCG---A-T-GTACCAACTTCGCAT--ATCT----GTGGTTTTGA----GCT-GAACTAAATTGAAATTG-AACTaattgagatt
gi|7 : AACTT---A---AT-T----GTGG-TTTGA----GA---AA-TAAA-TTGAATTG-
gi|8 : attttaaAACTG-T-----TAT-CTTTA--TCT---AAAATA-TA-TAACAC----T--GTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTGT--ATTTACACTTGGCATAT-TATGTATTGGATA-G---CCATTTATA-----------TA-TATTATGA--TTTA-CTTGCATAC--T------ACATTC----ACT---CCT-TG-TC-GT------TGGATACCATTA-TTGT------TTTAACTA-G-A-T-T-T-TA------TT-GCTA-CCTC-----A-TCGTACC-ACTT---GCATAT-T----GTGG-TTTGA----GT--GAA--AAA-TTGAATTG-AATTtcggccgaattgacgtacaccctggtaccacaatatgtttgcacatctaaatgcaagaagcatcccggcaaaattgttcaaacttcggacaaaagcacttcgtcgatgacatcgctgtatccctaggatcgaagaactttccggtgcccagcctaagattgagaacaaagccacaaaatcgaaattcacctattctaagctgatgtcgaaaatatatttttttaattaaaaaaacggcaaattaattcttagttctaacgatggtgaaagtaaagaata
gi|9 : TAAA--AAAAGTCTTAA--AAACTG-TAGGCCTAT-GTTTA--TTTTGAAAAAT--TA-TGATAC----T--GTCTGTCCTCCTTGAT----------TC--CTAGATTTACTGT--A-----------CAT-------T-T---ACA-T---TT---------------------TGTCGT--GTCTT--TTT--ATACA-C------ATTTGT----ATTGTGCCTCTG-AC---------T--AG----TTT-TATTAATTAATATACATGTACA-TATGT-TA-CTA--TT-G-TA-CCTC-----T-T-GTACAAA--T---A---A--------TGG-TTTGA----GG--GAA-TAAACTCAAATtg
blockSeqs : T G TT G AA AGG AA A A A TC T TGACAC A TC AGG CAAAAT T . A C . . A . T T GAC . . GT T T C T TA T A T . A . T . . GC T T TT AA T TGAT AA CC AGT GA T GGCC GT TT GA . T ATTATA TTTATTTA AGA AA TTTACACTTGG A TA GCA . GCT AA TATAGATATAC T TG C ATGTACCT ATTATG GTG T C GGA GG ACCA T AATTAAT A C C A A TTCTA T C C GATCA T C T CGCAT TCAAA T GTTT GC C T A
blockSeqs : . G . G AA AGG AA A A T TC T TGACAC A TC AGG ACAAAA T . A . . . A . T T CG . . GT . . C . . A A . . A . C . . AA T T . AA . . AA . . GA . . CC TT A . . ATTA TTTATTTA . . . . G TGG . A GT . . AG . CTT AA . . . . T . . T T . . . . TTT . . . CG . . T GCAT CT . . T . T A
blockSeqs : . G . G AA AG AA A A T C T TGACAC A TC AGG ACAAAA T . A . . . A . . T CG . . T . . C . . A A . . . . C . . AA T T . A . . AA . . G . . T T C . . CACT TAACT . . . . T . . . GT . . AG . TT AC . . . . . . . T C . . . . CTA . . . . . . C C C . . . . T A
blockSeqs : . A . C CT AT C . T G A A A C . . TTAT . . . . AA T . . . . . AA . . G . . T . . . . AA TAATC . . . . T . . . GT . . AG . AT AC . . . . . . . A C . . . . CA . . . . . . C G T . . . . T .
blockSeqs : . A . C CT AT C . T G A A A C . . TTAT . . AG . . . . . . . . . G . . T . . . . AA TAATC . . . . T . . . GT . . TA . AT AT . . . . . . . A C . . . . AA . . . . . . C A T . . . . T .
blockSeqs : . . . . CT AT C . T G A A A C . . TTAT . GC . . . . . . . . . . . . C . . . . AA GTAT . . . . T . . . TT . . GA . AT AT . . . . . . . C T . . . . TT . . . . . . T A T . . . . C .
blockSeqs : . . . . . . . . . C . . . . CT TC . . . . T . . . G . . G . CT TT . . . . . . . T C . . . . TT . . . . . . C A T . . . . . .
blockSeqs : . . . . . G . . . . CT TC . . . . . . . . . . . A . AC TC . . . . . . . C C . . . . TT . . . . . . C C T . . . . . .
blockSeqs : . . . . . . . . G . T GT . . . . . . . C C . . . . TA . . . . . . A A T . . . . . .
blockSeqs : T . . . . . . . A T . . . . TT . . . . . . C A T . . . . . .
blockSeqs : . . . . . . T C . . . . TT . . . . . . C A T . . . . . .
blockSeqs : . . . . . . T T . . . . TA . . . . . . C A T . . . . .
blockSeqs : . . . . . TC . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : AT***** AC G* A** N** TC NCAAAT******* ** ** AA T* AT******* AC**** ******
originalCons : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGNAATGAAATTTTCANTGACTTTCGTGAAATATTTTN-AA-N-TAGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAA---AT---CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGA-AAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACA-T------ACATAT----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
finalCons : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANATAT-----CGACATGAAATTTTCANTGACTTTCGTGAAATATTTTG-AAA--TAGTCAANAGTCAATGACACTAAAN--AGATCAAAAAAGGTCANCAAAT-------CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGA-AAA-TT----ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAACTG-TG----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A--GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACAT-------ACATAC----ACT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCCCCTTTCCTATTATCAGATGATGTCGAGCAATTTCTTTTTTTTGTTGATAAAAACTGCAAATTACGATATATTAGTTCTGAAAAATGGTGCAAGGAAAGAATAA
Unaligned ( gi|17 ): CTTCACCTACATGTATTCTCAGCTGATATTGTGCTTTTTTTTTTCGTCGATAAAAATGGCAAATTGCGATATATTAGTTCTGAAAATGGTGAAAGTCAAGAATAAA
Unaligned ( gi|21 ): GTTTATTTTCATACCTAAATACATTCTTTTATTAATGCATGGAATTTCGTATTCCATTTCATTGTGATTTGAGCAAATAAAATGTGTG
Unaligned ( gi|22 ): CATTACCAGCTGATGTTGAGCATGTTTTTTCGTGGAGAAAAATGACGATATATGTGGTAAAAGTAAAGAATAAA
Unaligned ( gi|23 ): TTCTCAGCTGATATTGAGCAATTTTTTTCGTCGATAAAAATGACAAATTGCTTAAAATGTCAAGAATGAAC
Unaligned ( gi|26 ): ACCTATTTTCAGCTTTGATATTGAGCATTATTTTCGTCGATAAAAA
Alignments
lowQualScore : 11111111111 1 11 111111 11 111 2222222222222 1 1 1 1 1 1 11 1 1111 1 1 11 1 1 1 11 4444444444444 1 555555555555 1 1 1 1 1 111111 11 11 111111 11111111 22222222222 111 111 22222222222 11111111 11111111111 111111 11111 1 1
lowQualScore : 5 4 77 4 22 99999999999 2 1 3 22 77 1 777777 888 99 555 2222222222222 5 0 3 0 0 0 0 11 5 3 8888 0 0 77 0 0 2 0 33 1 8888888888888 5 111111111111 3 0 6 0 99 3 8 9 77 0 0 5 888 0 99 0 66 777 88 4 111111 99 55 33 4 4 2 999999 0 0 66666666 777 66 11111111111 4 99 555 4 222 22 11111111111 4 44 4 00000000 11111111111 666 3 3 444444 77 6666 3 9999999 1 2 2 2 2 888888 2 2 2 00000 2 2 2 8888888 555555 2 5555 55 2 9 0
lowQualScore : . . .. . .. ........... . . . .. .. . ...... ... .. ... ............. . . . . . . . .. . . .... . . .. . . . . .. . ............. . ............ . . . . .. . . . .. . . . ... . .. . .. ... .. . ...... .. .. .. . . . ...... . . ........ ... .. ........... . .. ... . ... .. ........... . .. . ........ ........... ... . . ...... .. .... . ....... . . . . . ...... . . . ..... . . . ....... ...... . .... .. . . .
lowQualScore : 7 0 99 3 33 33333333333 0 0 0 77 99 0 111111 999 77 777 7777777777777 4 0 2 0 0 0 6 00 5 2 8888 0 0 00 0 0 5 0 88 0 5555555555555 5 222222222222 2 0 5 0 22 4 4 0 99 1 0 6 888 2 55 1 11 888 33 0 666666 44 00 55 0 0 3 000000 6 8 77777777 888 11 11111111111 4 00 666 4 222 11 11111111111 4 88 0 77777777 88888888888 444 1 1 222222 33 5555 1 3333333 1 9 9 9 7 555555 7 7 7 33333 7 5 4 6666666 888888 5 3333 99 5 5 0
consensus : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGANATGAAATTTTCANTGACTTTCGTGAAATATTTTNAA-AT--AGTCAANAGTCAATGACACTAAAC--AGATCAAAAAAGGTCANCAAAT-------CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCGAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG-AAA-TT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACAT------ACATAC----A----CT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
Reference ( family-3950 ) : GGTAAAGCTACACAATATTTT-ATCAAATTGAT--ATGATANAT----A-TCGACATGAAATTTTCANTGACTTTCGTGAAATATTTTGAA-AT--AGTCAANAGTCAATGACACTAAAN--AGATCAAAAAAGGTCANCAAAT-------CAATTGACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGCGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTNAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAACCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATG-AAAATT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTT--AAAATG-TA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TNATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACAT------ACATAC----A----CT---CCTCTG-AC-GT------T--AT----TTG-TACT------TATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|1 : GGTAA-GCTACACATTATCC--ATCAAATCAAT--ATGATATATTAATA-TC-AGATGAAATTTACATTGATTTTCGTGAAATATTTTTTA-ATCTAGTCAAAAGTCAATGACACTAAACCAAAAGGAAAAAAAGTCAACAAATTCATTTTCAATGGACGAGGGAGTTCA-TTACCC-ACTTTTTGTTGCGAAATAATCATTATTCAGACCGCAGTTTAGATTGA--CACATTAAAAAGAAAAAGATGAACTATGGTTGGTTA-CATT-GAATTAAAGTCTGTGC---GACAAAGCGTATGAAACCACGTCCAAAAATAGATCATTTGAGTTGGGGCGTTACAAA-CACGAACTAATTA-GATATTTTT-GAGGCCGAA----TCAGATTTCTATATCAAT-GTAAAACTTACTGAAATGTACCTCCTGAAATGTGT--GAACTGATATTTTTTGAATTTCTTTTATATCAATATAGATTCGACACGACTTAAAAATATATAATCGAATAAAATCTAAAATAAAGAATAAAATAAAGAATAAAATGAAACACTACTCTGCGATAAATTCCTAAAC-TTGGTGTTACAGTAAACATACAGGACTTTGAGAGCGATTCCCGTTGTAGTTATTCTACATTTATCTACTATAAAAAAAAATAATACCTTCA-----AA-ATATTGTACTAGACC-AAAT--ACTGTGAAATTTAATG-AAA-TT---ATGTCGACTAGTAATACATGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-CTTTA--TTTA--AAAAAGATA-TGAAAA----A-GTCTGTTCTCCTTAATACAAAA-TTACT--TT---TCTGTTGT--A-----------CATTT-TATG--T---ATATT---TCATCTATA-----------TA-TTTCATTAGTTTTA-TTTGCATA-----------------------------CCTCTG-AC-GTTATTAAT--AT----TTG-TACT------TAAAAATGTA-A-C-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-CTTGA----GA--GAA-TAAATT
gi|10 : AATATAATA-AAACTTGATATGTCAATCAGAAATAAAAG----AAA--ATA---TTT-----------------------TTTA--TTTT--AAAGTG-T--------------------TCTTTTAAATACATAA-GTAT----------TA------A-----------CAATT-TTTGG-T---ATA-TGCTTCATAAATA------------A-TGATATTG--TTCA-TTTCCATACTT------ATGTAA----A----TT---CCTCTG-AT-GT------T--AC----GTA-TATC------TATACATGAA-A-C-TTC-TG-CA---TT-G-TA-CCTC-----A-T-GTTCCACTTT---C---AC-C----GTGG-TTTGA----GC--GAA-TAAA-ATGAATga
gi|11 : TTTACCTGATATAAGAAAA--GAATAC-TTAAGCGCTGA-ATATTGTACTAGACC-AAAT--GTAATGGAATT-AATG-ACA-TT---ATGTCAACCA---ATAC---TGCTAAA--ATC---TTTAA--AAA-CTTT-G----CATGTTTTA--TTCT--AAAG-G-TA-TGTGAATT--A-ATCTGTCCTCCTTAGCATAAAA-
gi|12 : GTTCTTTGTTTTC-TTTACATACATGTACCTACATAC----A----CT---CTTCTG-AT-GT------T--AT----TTG-TACT------TATAAATGTA-A-C-ATT-TG-AA---TT-G-TG-TCTC-----A-T-ATACCAATAT---G---AT-T----GTGG-TTTGA----GA--GAA-TGAA-TTGAATTG-AATTGcttcacat
gi|13 : gAAAGCTACACATTATTTTTATCAAATTGAT--ATGATAAAT----AGGCG-CATGAAATTTTCAATGACTTTCGTGAAATATTTTAAT-CT--AGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT--AT-------CAATTGACGaa
gi|14 : ggAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----AGGCG-CATGAAATTTTCAATGACTTTCGTGAAATATTTTTAATCT--AGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT--AT-------CAATTGACG
gi|15 : gggAAAGCTACACAATTATTT-ATCAAATTGAT--ATGATAAAT----A-GCG-CATGAAATTTTCAATGACTTTCGTGAAATATTTTTAATCT--AGTCAATAGTCAA--A---TAAAA--AGATCAAAAA---TCATT--AT-------CAATTGACG
gi|18 : ggCTG-ACCGT------TT-AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TATTT---TT-G-TACCCTC-----A-T-GTACCAACTT---A---AT-T----GT-G-TTTGA----GT--GAA--AAA--TGAATTGAAATTG
gi|19 : TCTG-AC-GT------T--AC----TTG-TACT------AAAAAATGCA-A-T-TCT-TA-TT---TTTG-TA-CCTC-----A-T-GTACCAACTT---A---AT-T----GTGG-TTTGA----GT--GAA-TAAA-TTGAATTGAAATTGaggtt
gi|2 : aGGTAAACATACACAATATTTT-ATCAAATT-ATTTAT-ATCTAT----A-TCGAAATGAC-TTTTCATTGATTTTCGTGAAAT-TTTTGAA-AT--AGTCAAAAGGCAATGACACTAAAC--AGA--AAAAAAGGTCACAAAAT-------CAAT-GACGAGG-AGTTCAATTACCACATTTTTT-TAGCAAAATAATTATTATTCAGCC-GCAGTTTAGATTGAAC-ACATTAAA--GAAAAAGGTGAACTATGGTTGGTTG-CATTTGAATTAAAGTCTGTGCGAC-ACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAA-TGTGAACTATTTTTAATATTTTTTGAGGACGAACATCTCAAATTTCTATATCACTTGTAAAACGTACTAAAATCTACCTCCTTGAATATGTTAAAATTGATAATTTTTAAA----------A--AATGTAGATTCAACACGACTTCAAAATATATAATCGAACAAAATCTAAAATA------------AAGAATAAA-TGAAACACTACTCTGCGATAAAT-CCTAAACTTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTG-AATTTAATG-AAAATT---ATGTCGACTAATAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTAT-TTTT--AAAATG-TA-TGAAAA----A-ATCGGCT-TCTTTAATACAAAA-TAACT--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-TA--TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGACTACAT------ACAT-T----A----CT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----ATT-GTACCAACTT---A---GT-T----G-GG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGGa
gi|20 : T------ACATAC----A----CT---CTTCTG-AC-GT------C--AT----TTG-TATT------TATAAATGTA-A-C-TCT-TA-TT---GT-G-TG-CCTC-----A-T-GT-------------------------GG-TTTGA----GA--GAA-TAAA-TTGAACTGAAATTGatt
gi|24 : cc-TA-TA---CT-G-TG-CCTC-----A-T-GTACCGCTTT---C---AT-T----GTGG-TTTGAGTTTGAGCGAA-TAAA-ATGAA-TG-AAGTGaa
gi|25 : AAATACA-A-T-TCTATA-TTCTATT-G-CA-CCGC-----G-T-GTACCAA--T---A---AT--------GG-TTTGA----GA--GAA-TAAATT
gi|27 : CAATTTATATTGA--CACATTCAA--GAAAAAGATGAACTATGGTTGGTa
gi|3 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTGAA-AT--AGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAAA-------CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTTCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---ACATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACAT------ACATAT----A----CT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|4 : GGTAAAACTACACAATATTTT-ATCAAATTATT--ATCATCTAT----A-TCGAAATGAA-TTTTCATTGATTTTCGTGAAATATTTTGAA-AT--AGTCAAAAGTCAATGACACTAAAC--AGA--AAAAAAGGTCAACAAAA-------CAAT-GACGAGG-AGTTCAATTACCA-ATTTTTT-TAGCAAAATAATTATTATTCAGAC-GCAGTTTAGATTGAACCACATTAAA--GAAAAAGGTGAACTATGGTTGGTTGTCATTTGAATTAAAGTCTGTGC--CGACAA-GCGTATGAAACCACGTCCAAAAATAGATCATTGGAGTTGGGGCGT-ACAAAGTGTGAACTATTTA-AATATTTTT-GAGGACGAACATCTCAAATTTCTATATCACT-GTAAAACGTACTAAAATCTACCTCCTTGAATGTGT--AAATTGATAATTTTAAAA----------A--AATGTAGATTCAACACGACTTCAAAA-ATATAATCGAACAAAATCTAAAATA------------AAGAATAAAATGAAACACTACTCTGCGATAAAT-CCTAAATCTTGGTGT-ACAGTAAACAGACAGGACTTGGAGAGCGATTCCCGCTGTGGTTATTCCACATTTGTCTACTATAAGAAAA--TAATACCTTCAGCAAAAATATATTGTACTAGACCTAAAT--GCTGTGAAATTTAATGAAAAATT---ATGTCGACTAGTAATACAAGTATTAAA--AAA---CTTAAG-AAA-CTGT-G----TAT-TTTTATTTTTT--AAAATG-TA-TGAAAA----A-ATCGGTTCTCTTTAATACAAAA-TAATC--TT---TCTATTGT--A-----------CATTT-TATGT-T---ATA-T---TCATGTATA-----------TA-TGTTATTAGTTTTA-TTTGCATACAT------ACATAT----A----CT---CTTCTG-AC-GT------T--AT----TTG-TACT------CATAAATGCA-A-T-TCT-TA-TT---TT-G-TA-CCTC-----A-T-GTACCAACTT---A---GT-T----GTGG-CTTGA----GA--GAA-TAAATTTGAATTG-AATTGG
gi|5 : AAAAAA--GAATACCTTCAGCAGAA---TATTGTACTAGACC-AAGT--ACTGTGAAATTTAATG-AAATTT---ATGTGTACTAGTAA------TATTACA--AAA---CTTAAGAAAA-CTGT-G----TATCCTTTA--TTTCA-AAAATA-TATTGAAAATTATA-GTCTGTTTTCTTT--T----------TC--TA---TTAATTGTAAA-----------CATTT-TATG--T---ATA-T---TCATG-ATA-----------TATTTTTATTTATTTCA-TTTGCATACCT------ACATATTATGA----CT---CTTCTG-AC-GT------T--AT----TTG-TACT------AATAAATGTA-ACT-TTT-TG-TA---TT-G-TA-CCTCGATCAA-T-GTACC
gi|5 : -GTACCAAATT---A---GT-TCAAAGTGG-TTTGA----GA--GAA-TAAA-TTGAATTG-AAtcaaatatgtttcaatgtgtctatcgtaccaaattagttcaaagtggtttgagagaataaattgaattgaaaattgagatt
gi|6 : aaaaaagaataccttcagcagaatattgtactagaccaagtactgtgaaatttaatgaaatttatgtgtactagtaatattacaaaacttaagaaaactgtgtatcctttatttcaaaaatatattgaaaattatagtctgttttctttttctattaattgtaaacattttatgtatattcatgatatatttttatttatttcatttgcatacctacatattatgactcttctgacgttatttgtactaataaatgtaactttttgtattgtacctcgatcaatgtacctcaaatatgtttcaatgtgtctatcCAGCGCAAATAT--TGTACAAGACC-AAATTTATTATGAAATTTAATG-AAC-TT---ATGTCCACTTGTAATAC-----CCAAACCAAC---TTTAAG-AAAACTGTTG----TAT-CTTTA--TTTTC-AAAATA-TA-TAACCA----CTGTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTCC--G-----------TATTTACACAT-TGCAATA-T---TTATGTATGTATAGATATACTA-TATTATTGATTTTACTTTGC-TACCT---------TAC----ACTTCCT---CCTCTGTCC-GTGGA---T--AC----CTATTATG------TTTAACTAC----T-TTC-CA-TC---CT-G-TA-CCTCCG---A-T-GTACCAACTTCGCAT--ATCT----GTGGTTTTGA----GCT-GAACTAAATTGAAATTG-AACTaattgagatt
gi|7 : AACTT---A---AT-T----GTGG-TTTGA----GA---AA-TAAA-TTGAATTG-
gi|8 : attttaaAA-CTGT------TAT-CTTTA--TCT---AAAATA-TA-TAACAC----T-GTCTGTTCTCCGTAATACAAAATTTATTTATT---TCTGTTGT--ATTTACACTTGGCATAT-TATGTATTGGATA-G---CCATTTATA-----------TA-TATTATGA--TTTA-CTTGCATAC-T------ACATTC----A----CT---CCT-TG-TC-GT------TGGATACCATTA-TTGT------TTTAACTA-G-A-T-T-T-TA------TT-GCTA-CCTC-----A-TCGTACC-ACTT---GCATAT-T----GTGG-TTTGA----GT--GAA--AAA-TTGAATTG-AATTtcggccgaattgacgtacaccctggtaccacaatatgtttgcacatctaaatgcaagaagcatcccggcaaaattgttcaaacttcggacaaaagcacttcgtcgatgacatcgctgtatccctaggatcgaagaactttccggtgcccagcctaagattgagaacaaagccacaaaatcgaaattcacctattctaagctgatgtcgaaaatatatttttttaattaaaaaaacggcaaattaattcttagttctaacgatggtgaaagtaaagaata
gi|9 : TAAA--AAAAGTCTTAA--AAA-CTGT-AGGCCTAT-GTTTA--TTTTGAAAAAT--TA-TGATAC----T-GTCTGTCCTCCTTGAT----------TC--CTAGATTTACTGT--A-----------CAT-------T-T---ACA-T---TT---------------------TGTCGT--GTCTT--TTT--ATACAC------ATTTGT----A----TTGTGCCTCTG-AC---------T--AG----TTT-TATTAATTAATATACATGTACA-TATGT-TA-CTA--TT-G-TA-CCTC-----T-T-GTACAAA--T---A---A--------TGG-TTTGA----GG--GAA-TAAACTCAAATtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCCCCTTTCCTATTATCAGATGATGTCGAGCAATTTCTTTTTTTTGTTGATAAAAACTGCAAATTACGATATATTAGTTCTGAAAAATGGTGCAAGGAAAGAATAA
Unaligned ( gi|17 ): CTTCACCTACATGTATTCTCAGCTGATATTGTGCTTTTTTTTTTCGTCGATAAAAATGGCAAATTGCGATATATTAGTTCTGAAAATGGTGAAAGTCAAGAATAAA
Unaligned ( gi|21 ): GTTTATTTTCATACCTAAATACATTCTTTTATTAATGCATGGAATTTCGTATTCCATTTCATTGTGATTTGAGCAAATAAAATGTGTG
Unaligned ( gi|22 ): CATTACCAGCTGATGTTGAGCATGTTTTTTCGTGGAGAAAAATGACGATATATGTGGTAAAAGTAAAGAATAAA
Unaligned ( gi|23 ): TTCTCAGCTGATATTGAGCAATTTTTTTCGTCGATAAAAATGACAAATTGCTTAAAATGTCAAGAATGAAC
Unaligned ( gi|26 ): ACCTATTTTCAGCTTTGATATTGAGCATTATTTTCGTCGATAAAAA