lowQualScore : 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 1 11 666666666666 111111111 11 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 33333333 55555555 1 66666666666 1 4444
lowQualScore : 7 22 6 4 444444444444 888888888 99 7 6 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 6 0 22222222 4 88888888 5 6 66666666666 5 2222 6
lowQualScore : . .. . . ............ ......... .. . . ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . . ........ . ........ . . ........... . .... .
lowQualScore : 0 00 0 0 777777777777 000000000 33 3 7 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 0 7 55555555 0 55555555 0 0 00000000000 0 0000 0
consensus : NTGTTAACGATCATCNGCAAT--AACGN-AG-TGTCTTTATCGTCACGTCAAACGACGCTTCATTCGTATCCGCTNTCCTCAGCCCAGAGTTCTACCGCCAT--GT--T-TGAACA-A--CGA-----AGCAN------A--A-TATNTT--ACGGNTC-GGCACTTTCGCTTCCGTCTAGCGTCTTC-A-----ACA--TTCA------CANCTTT---CTA-C-CCACGTTTC---------TGTCGCC-----------ATGTGATG-GCGA-GTCTAC---TCTTGTGT-GTTNGA---TA-----A-CAAAG--AAAAA--A--------ATTTATAATCGGATA---AT---TTT-NG-A-CGANCGGGCGGATAT--------TT-----TTT---GATACCAG-GAAA-TA---AT-----------T-TATAGTTTCGATCTCTTGCAAATAAAT---GATGCGGCGAATCTG---ACGAACTCGATTACAAAT-------T--G-----------GTAT--GCCTTAAATTATATAGATCTCA-ACTTCTANAANAGAAAANTACTTTGAANAACTAGATCAGAGTNACAAGNATTGANTCGGTCAACCACGAGACTGGAGCTTTATATATTGCTTGTTAGAGCAACTTCAGNNGTAG-TGT--AAGTAGAACTTGCTGTGTATCTACTCNTTCNATGAGCACNNGTCT-----GATAAATCTCGTATCGTAGAGAAAA----GTCCGGAA--AACTATA---TT---------------TNGCANAAAT-TCC--TAA-------------G--TGACGAA--ACT-----------AAATCT-TGATCTGTAAACATANAACAGTAAACCA--TATNCCAAA--TTTCAGCTTCCTAAATCAAAACATGGTAAA-----------AAAA---ATCATCGAAGTTCATTAAA-TCA-GAAATTAAGTCTTACAA--TT---TTCGT-NAAAATAAGTCAACCG-----TAA-CGAA--AGT---AAC---TNCATCTGTATCTACTCGA--TAG----GTAACNATATATCAAA-TTCAGATTCCTT-AAGT----C---ATAGC-ATAGT----GG-ANAAAAGTC----G---------------CACAAAAT--CTCGTAAAC-------A-TCGCTTAACTGTGACGAAACTTGATCTTGANCTGTAANCATACAACAGTAAACCACGTACCAAATCTCAGCTTCCAAATCAAAACATG-GTAGAAAA
Reference ( gi|1 ) : ATGTAAACGGCCGTCTGCAATTAAACGA-AGATGTCTTTATAGTCACATAAAACAACTCTTCATTCGTACATGC-ATCCTCAGGTC-GAGTTCTACCACCAT--GT--TCTGAACG-A--TGA-----AACAT------A--ATTATATT--ATAGTTC-GACATTTTCGCTTCTATCTAGCGTCTTC-A-----ACA--TTGA------CATCTTT---CTA-C-CCGCGTTTC---------TGTTGCC-----------ATGCGATG-GCGA-GCCT-----TCTTGTAT-ACTTGA---T------A-CAAAGTCGTAAA--A--------ATCTATAATAGGATA---AT---TTT-TG-A-CGAGCGGGCGGATAT--------GT-----TTT---GATACCAG-GAAA-TA---AT-----------TATATAGTTTCAATCTCTTGTAAATACATGTAGATACGACGAATCTA---ACGAACTTAATTACAAAC-------T--G-----------GTAT--GTCTTAAATTATAAAGATCTTA-A----TAAAAAAAAAAGATAC---AGAG---TATAT-AAAG-TACAAGAACTAATTCAGTTAACCATGATACT-AAGCTATACA-ATTGATTGGTAAAACAA--TCAACTGTAGCTGCTAAAGTGAAAATCAATGTGTATCTATTCATTCAATAAACACTTGTCCCAGGGGGTAGAC-----ATTGTAGAGAAAA----GTATGGAA--AACTGCA---TT---------------TGGTATAAAT-TCC--TAA-------------G--TGACGAA--ACT-----------AAA-CT-TGATCTGTAAATATATACTAGTAAATTA--TACGACAAA--TTTCAATTACCAAAATTAATGCATGTTAAA-----------AACA---ATCA-CG--------CAAA--CAGGAAACTAAGTCTTACAA--TG---TT-GT-CGGAATAGGTCAACCG-----TAA-CAAA--AAT--GAAC---TGCATCTGTATCTATTCGA--TAG----GTAATCGCATGTCAAA---CATACTCCT--AAGT----T---AAAGC-ATAGT----GG-AGAAAGGCC--------------------CACAAAAT--GTTGTAAA--------A-CCACTCAACTGTAACGAAACTCAATCTTAAACTGTAAGCATAAAGTAGGAAACTACGTATCAAATCTCAATGTCAAGA--AAAAAATGTGCGGAGAACCAAGT
gi|18 : TGTTAACAATCATCAGCAAT----CGA-AGATGTCTTTATCATCACGTCAAACAA-GCTTCATTCGTA
gi|9 : tggaatttttattatttcactttttggaatgtttttttaagtaactACGATCATCTGCAA---AATGT----TGCCATGATCATCATTTCAAACAACCCTTT-TTCGTATCCGCTGTC------TC-GAGTTC---CATTATTCGT--TAGGAACA-ACCTAACCCCAAGCATCTAGAGACCAGTATTTT---TGGTTCCGACGCTG--GCTTC-ACTTAGCGTCTTC-A-----AAA--TTCA------CGACTTT---CTA-C-CAGCGTTTA---------TGTCGTC-----------ACGTGAAG-ACTATATCTATC--TCTTGTGT-GTTTGA---TA-----A-CAAAGtc
gi|4 : ttcaaacgcatcgcttttttttttttggcatttctctaatatttgcccAAACGGCAGTTATCTTTATCGGC-CATCAAACGACACTTCATT-GT-----T-TTCCTCAGCCCAGAGTTCTATTGC--T--GT--------CGTA--GGA-----A----------A--ATC-TGCTGAACAAT---GA-ACTTTTGCTTAGAACTA----CATC-A-----ACATGTTGAACCTACTACCCCT---TTA-C-CTACCTTTC---------TGTTGCC-----------AAGTCATGTGCG------------TTTGTATAAAAAGA---CAAAAAAA-CAAAAACAAAAA--AAAAACACCATCTATAATCGGATATGCATGCATTT-AC-A-CGATTGTGCGGA-AT--------AT-----TTT---
gi|6 : ACCTCCA---GTAGTCTAAACA-T--TGA-----AGCAG------A---------T--AAAGATC-AGTATTTTCATTTCTGTCTAGCTTCTT--------ACA--GTCA------CAACTTTATTCTATC-CCATGTATC---------TGTCTCTTTAGGGTTTATATATGATG-CTTA-GATC-----TCTTGTGT-GTTAGA---T------A-ATGAGT-ATAAA--A--------ATTTATTGTTGGA-A---AT---TTTAGG-A-CAAGCAGGTGAATAT--------TTATTTTTTT---AATGCCAG-GAAA-TA--------------------TGATTTCAATTTCTTGCAAATAGAT----ATATGGAAAACCTG---ACAAACTCAATCACTAAT-------T--G-----------GTAT--GTCCTAAATTATATAGATCTCA-tttttttaattcatttattatttacttattttttttggatacaaggaaatataaattttgatttggtctcgtctaaatagatgcggcgaatcggacgaactcgattacaaataggatgctttaaatta
gi|3 : TGAACA-A--CAA-----AGTAC------A----TATAT---ACAGATC-AGCCATTTCACTTCCTTC-AGCGCCTTCCATGGCCACA--TTCG------CATCTTA---TTG-CATCAC-TTTCACTAGAGAGTGACGCC-----------AT---ATG-G-GG-GTCTACAACTCTTTTGT-GTTTAAAAAT------AACAA----GAAAAGAA--------ATTTATAATCTGATG---TT---TTT-GG-A-TAAGTGGG-----------------------TT---GATA----------TT---AT-----------TATA-AGTC-CAATCTCTTTTAAATAAATGT-GATGC----ATTCTGTTCATGAAATTGATTACAAATAGACACAT--GTATCAGTACATGTAT--GTCCTAAA-TATAAAG-------------AAAATAGAAAAATAC---AAAGAACTA-ATCAGAG-AACAAATATTGAGTCA-TT-ACTACAAGACTGGAGTTTTATATATTGTTTGTTAGAGTAACTTCAACTGTcat
gi|8 : ATGGGATT---AT---TTT-TGGA-TGATCGGGCGGATGC--------TTTA---TTT---ACTACCAGAAAAA-TA---ATATATGATTACATGTACAATTTCGATCTCTCCTAAATAAA---AG---CGGTGGACCGG---ATGGAGTATGTTACAAA--------T--A-----------GTA--------GAATTATATAAATCTCACACTTCTACAAA------CTACTTTGAAC---TAGAT-AGAGTTACAAGAATTGATTAGGTCAACCACGA-----GAGC---------TGCTT-----AAC----TCAGAGGTAG-TGT--AAGTAGAACTTGCTGTGTATCTACTCTTTTCATGAGCACATG
gi|16 : ---AT---TTT-TG-AACGAACGGGCGGATATTATATATATT-----TTT---AATGCCAG-GA----------------------------TTTCGATCTCGTGCAAA------TGGATGAGACAACTC-A---ATG--C----TTACAAAT-------T--G-----------GAATTCGT-TTAAATCAgacaataaagatt
gi|20 : ttgtcagTAT---------T-----TTT---GACATCAG-GAAAATAT--CT-----------TA-ATA-TTATGATCTCTTGTAAATAAATGCAG----GA--AATATG---ACGAACTTGATTACAAAT-------T--G-----------GCAT--GCCTTTAATTA
gi|4 : gatTAT--------TT-----TTTTTGGATACAAG-GAAA-TATAAAT-----------TTT---GATTTGGTCTCGTCTAAATA------GATGCGGCGAATCGG---ACGAACTCGATTACAAA--------T--A-----------GGAT--GCTTTAAATTAaag
gi|21 : aaacggcagttatctttatcggccatcaaacgacacttcattgttttcctcagcccagagttctattgctgtcgtaggaaaatctgctgaacaatgaacttttgcttagaactacatcaacatgttgaacctactacccctttacctacctttctgttgccaagtcatgtgcgtttgtataaaaagacaaaaaaacaaaaacaaaaaaaaaacaccatctataatcggatatgcatgcatttacacgattgtgcggaatatttttttttttaattcatttattatttactAATCTCTTGCAAAT-------GATGTGGTGAATCTA---AT-AACTTGATTA-AAAC-------TTTG-----------GTGT--GCCTTAAATTATACAGA
gi|2 : TCTA--CATTCAATAA----TAGTCT-----GATAAATCTCGTATCGTAGTGGAAA----GTCAAGAACCAACAACAAAGTC---------------TG--ATAAATCTCA--TAAAAATCGGTTTACTG--TGACAAA--ACT-----------TGATCT-TGATCTGTAACT------TAGTAAATCA--TATACCAAA--TCTT-----CCTAAATCAAATCACGGTAAAGTGTGGAATACAAAA---ATCATCGAAGTTCATTAAAATCAGGAAATTAAGTCTTACAA--TT---TTCAT-GAGAATAAATCAGCCGTACGATAA-CAAA--AGT---AACAAAAACATCTGTATCTATTCTAATTAA----GTGACCATGTATCAA-------ATTTTT--AAGT----CTGGATATCTATATTTGCAGGCACAAATTCC--------------------CAT-AAAT--TTGGTAAAC-------A-TCACTTAAATGGGATGAAACTTGATTT
gi|7 : -----ATTGTAGAGAAA-----TTCCGGAA--AATTATA---TTCAACTCCAACAACTCTCGTAAAAAT-AGC--TCATCT----------G--TGACAAA--A---------------A-CT-TGATATGTAAACATAg
gi|5 : GAAAAAAAGTCGTCTGGAA--AACTATA---CT---------------TAGCACAAAG-TCCCATAA-------------ATCTCACAAATCACTCAACTGTGACAAAA-CT-TCAACTGTAAACATACAACAGTAAACTACGTAC--CAAA--TTTCAGCTTCC-AAATCAAAACATGGTAGA-----------AAAA---Accattgtaaacaatgctatgtaaacatatcattgtaaacaaaatgccaaaattcagcttcctaaatcaaaacatggtgaaaacagaaatcaaaattcattcaacctttcaatttttgttaaaatgcgtcaactatagggaaagtacgacctgatctgtatcaactgatttggtatttaaccacattccttagtcatggcatagt
gi|11 : tatctatatgcattaggtaaccaaatatcatatttcagattccttaaagttacagcataat--TGATGAA--ATT-----------GAATCT-TGATCTGTAACCATAAACCAGTAAACCA--CATT-CAAATTTTTTAGCTTCCAAACTCACAGCATGagttaaaaaaacaagtgggacaaaagattgataaacagatgcagaagagacaagtacagagttccctccaagtattattgttaggggactacaaccccaaaccacttgaa
gi|7 : T-----------AAA-CAATGCTATGTAAACATATCATTGTAAACAA--AATGCCAAA--ATTCAGCTTCCTAAATCAAAACATGGTGAA-----------AACAGAAATCA------------AAATTCA-----TTCAACCTTTCAA--TT---TTTGT-TAAAATGCGTCAACTA-----TAG-GGAA--AGTACGACC---TG-ATCTGTATCAACT-GA--T-------T--TGGTAT-TTAAC---CACATTCCT--TAGT----C---ATGGC-ATAGT----atggataaagtgtgaaaaatcaactgaggcagactgaccggcagacagctgaagacgaaacctacagtcctcttcaatttcaacagtaaagggactcctaaaactctgaa
gi|12 : attgtagagaaattccggaaaattatattcaactccaacaactctcgtaaaaatagctcatctgtgacaaaaacttgatatgtaaacataccattgAA--CATGAAACCAAGTCGTAAAAAATGATTTT-GTTCAAAATAAGTCAACTG-----TAAACAAAGTAA----AAT---TTTATCTTTCTCTGCTCAT--TAGCGTAGCAACAACATATCAAAATTCAGATTCCTTTAAGTAACTT---AAAGC-ATAGT-----G-AGAAAAGTCTGGAA---------------CACAACATCCATTGTAA
gi|5 : ATCTATATGCATT------AG----GTAACCAAATATCATATTTCAGATTCCTTAAAGT----T---ACAGC-ATAAT----GA-AAAAAAGTCGTCTGGAAAACTATACTTAGCACAAAGT--CCCATAAATCTCACAAA-TCACTCAACTGTGACAAAACT---TC---AACTGTAAACATACAACAGTAAACTACGTACCAAATTTCAGCTTCCAAATCAAAACATG-GTAGAAAA
gi|2 : tAAAT--CTCATAAA--------AATCGGTTTACTGTGACAAAACTTGATCTTGATCTGTAACT------TAGTAAATCATATACCAAATCTaaagttaaaaaaacaagtgggacaaaagattgataaacagatgcagaagagacaagtacagagttccctccaagtattattgttaggggactacaaccccaaaccacttgaa
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TAACCACATAATAAATTCAGATTCCCCAAAGTTAAAGCATGTGTGGATAATGTTCAGAAAGCGTTACTCCGATACCACGTTTCTAAACAAAGTAAAAATTGCCTACATTGTAACTGTAACAAAACTGTATACTTTCAGTAAAACATACAGTTGTAAATCACACTGAAACTTCAACATCACAATCAAAGCGTGGTGAAAAGATACGAAAATCCAGGTG
Unaligned ( gi|13 ): GTTAAGCATTGTGGAATAGTGGTCCAGAAGCTATACTCCGATACCCACGTTTCTAACAAATAAAATTGCCTACATTGTAATCAGTAAACATACTGTTGTAAATCGCACTTGAAACTTCAACATCCACAATCAAAGCGTGGTGAAAAAGATACGAAAATCCAGGTG
Unaligned ( gi|14 ): TAACACAACACCCTATAAGTGCCATTAATCTTCTTGACTTGATCAGATGGAGCTTAAACATAGAGTAGTAAACAGCATACCAAATTCAGTTTCCTTATTGAAATCAAAGCATGCGGTGAACAAAATATAGGAAACAA
Unaligned ( gi|15 ): TTTGTAAAATTTATTTCGGCACAACGTCCCATAAACCTCGTAAACTGTAAGGAAACTAAACACATACCAAATTTCAGCATTCGATATCAAAGCATGATAGAAAAAAATTCGGAGAATTAAAGGCAGAAGAATGA
Unaligned ( gi|17 ): CAAGAATTAATATGGTCAACCATGAGACTTACGACTTAAATAGCTCAAATTAAAGTAGTGCAACTAAAACTTGCTGTGTATCTTCTCTTTTGATAATCACACGGAAAAAATT
Unaligned ( gi|19 ): AACCGCAAAACAAGTGAGACTTGACCGGCGTCCCCTCATTACCGTAGGTGACTACACACCAAGATGTCAGATTCTTAAGGTACATGTGATAGTGGGAAAAACCCGGA
Unaligned ( gi|22 ): AAGGTCTGGAAAACTACACTTTGCAAAAAGTCCCATCAATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333 222222 6666666666666666666666666666666666666666666666666666666 222222222 1 22222222 111 333333333 6666666666666666666666666666666666666 222222 111 222222 444444444 111111111 1 222222222222222222 7777777777777777777777777777 22222222222222222 33333333333333333333 55555555555555555555555555555555555555 22 1 44444444444444444444444 11 111 1 111 1 333333 22222 55555555555555555555555555555555555555555555 11111 22222 11111 111 11111 5555555555555555555 33333333333333333 111 111111 2222 44444444444 111 222222222 333333 22222 11 22222 333333333333333 3333333333333333 111111 1 22222222222 111 33333333 111111111111111111111111111111111111111111111111111111111111111111 3333333 222222222 11 1 1 11 1
lowQualScore : 4 1 66666666666666 3 4 2 99 3 2 666 88 6 999999 7 0 4 4444444444444444444444444444444444444444444444444444444 11 6 8 1 999999999 0 88888888 0 8 1 444 8 8 5 222222222 7777777777777777777777777777777777777 333333 1 444 0 111111 000000000 1 999999999 1 3 1 1 6 222222222222222222 888 1 7777777777777777777777777777 99999999999999999 888 4 1 888 66 22222222222222222222 2 5 4 0 0 77777777777777777777777777777777777777 11 1 1 0 6 8 5 66666666666666666666666 88 666 3 999 0 3 1 1 2 2 22 444444 66666 0 7 1 22222222222222222222222222222222222222222222 1 66666 1 22222 2 99999 33 9 77 000 44444 3 5555555555555555555 55555555555555555 44 111 999999 5 0000 5 11111111111 000 777777777 999999 55 55555 33 1 0 00000 99 666666666666666 0000000000000000 2 1 3 0 5 333333 0 55 1 22222222222 5 555 1 1 00000000 333333333333333333333333333333333333333333333333333333333333333333 2 2222222 666666666 1 11 3 2 9 0 6 0 2 33 8 1 3 0 7
lowQualScore : . . .............. . . . .. . . ... .. . ...... . . . ....................................................... .. . . . ......... . ........ . . . ... . . . ......... ..................................... ...... . ... . ...... ......... . ......... . . . . . .................. ... . ............................ ................. ... . . ... .. .................... . . . . . ...................................... .. . . . . . . ....................... .. ... . ... . . . . . . .. ...... ..... . . . ............................................ . ..... . ..... . ..... .. . .. ... ..... . ................... ................. .. ... ...... . .... . ........... ... ......... ...... .. ..... .. . . ..... .. ............... ................ . . . . . ...... . .. . ........... . ... . . ........ .................................................................. . ....... ......... . .. . . . . . . . .. . . . . .
lowQualScore : 0 0 88888888888888 2 2 0 00 2 5 999 33 7 777777 3 2 2 9999999999999999999999999999999999999999999999999999999 88 4 2 4 000000000 6 88888888 8 0 0 000 0 0 0 000000000 4444444444444444444444444444444444444 000000 0 000 8 111111 000000000 0 777777777 0 3 0 0 7 555555555555555555 888 4 1111111111111111111111111111 11111111111111111 888 5 1 888 99 44444444444444444444 2 0 4 8 2 77777777777777777777777777777777777777 33 0 0 2 5 8 0 00000000000000000000000 00 000 3 333 7 2 0 0 0 8 00 333333 00000 7 0 4 00000000000000000000000000000000000000000000 0 77777 0 88888 2 33333 33 8 99 000 33333 6 0000000000000000000 00000000000000000 00 777 999999 4 0000 7 44444444444 000 000000000 222222 22 00000 00 0 8 00000 66 666666666666666 9999999999999999 3 0 3 1 7 111111 7 99 4 00000000000 7 777 0 0 88888888 111111111111111111111111111111111111111111111111111111111111111111 0 5555555 888888888 0 00 2 5 8 5 5 0 0 55 8 2 2 0 0
consensus : NTGTNAACGATCGTCTGCAAT--AACGA-AGAT-GTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-CC-GAGTTCTACCGCCA-T--GTT-TGAACAACG-------AAGCAN---------AAT-ATATT--ACAGTTCGGCACTTTCGCTT----C--CATCTAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGTGATG-GCGA-G-TCTA-C---TCTTGTGT------GTTTGA---TAACAAAG--A-NAAAA---------ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TA-T------------AATTTCGATCTCTTGTAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAAA-AGAAAAATAC---GAAGAGCTA-AT-AGAGT-ACAAGAATTGATTCGGTCAACCACGAGACT-GAGCTTTANATATTGCTTG-TAGAGCAACTTCAACNGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACNCGTCC-----GATAAATCTCGCATCGTAGAGAAAAGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAA---GTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCCN-----AAATCAAAGCAT----GGTG-AA-----------AA---AAATCATCGAAGTTCATTAAAGNCGG-AAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTACTCG-----A--TAG----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-C---AC----GGC-ATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTTAAACTGTAAG-CATACAGCAGTAAACTACGTACC-AAATTTCAGC-NTCGAAATCAAAGCATG-GTAGAAAA
Reference ( family-3911 ) : NTGTTAACGATCATCNGCAAT--AACGN-AG-T-GTCTTTATCGTCACGTCAAACGACGCTTCATTCGTATCCGCTNTCCTCAGCCCAGAGTTCTACCGCCA-T--GTT-TGAACAACG-------AAGCAN---------AAT-ATNTT--ACGGNTCGGCACTTTCGCTT----C--CGTCTAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCACGTTTC---------TGTCGCC-----------ATGTGATG-GCGA-G-TCTA-C---TCTTGTGT------GTTNGA---TAACAAAG--A-AAAAA---------ATTTATAATCGGATA---AT---TTTNG-ACGANCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TA-T------------AGTTTCGATCTCTTGCAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATATAGATCTCA-ACTTCTANAANAGAAAANTACTTTGAANAACTAGATCAGAGTNACAAGNATTGANTCGGTCAACCACGAGACTGGAGCTTTATATATTGCTTGTTAGAGCAACTTCAGNNGTAG-TGT--AAGTAGAACTTGCTGTGTATCTACTCNTTCNATGAGCACNNGTCT-----GATAAATCTCGTATCGTAGAGAAAAGTCCGGAA-----AAC---------TATATT---------------TNG---CANAAAT-----TCCTAA---GTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NAACA-------GTAAAC----CAT----------ATNCCAAA--TTTCAGCTTCCT-----AAATCAAAACAT----GGTA-AA-----------AA---AAATCATCGAAGTTCATTAAA-TCAG-AAATTAAGTCTTACAA-----TTTTCGTNAAAATAAGTCAACCG-----TAACGAAAGT--A--A--C---TNCATCTGTATCTACTCG-----A--TAG----GTAACNATATATC-AA-AT-T-CAGATTCC-TTAA-GT-C---AT----AGC-ATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAC-------ATCGCTTA-------ACTGTGACGAAACTTGAT-CTTGANCTGTAAN-CATACAACAGTAAACCACGTACC-AAATCTCAGC-TTCCAAATCAAAACATG-GTAGAAAA
gi|1 : TGTAAACGGCCGTCTGCAATTAAACGA-AGAT-GTCTTTATAGTCACATAAAACAACTCTTCATTCGTACATGC-ATCCTCAGGTC-GAGTTCTACCACCA-T--GTTCTGAACGATG-------AAACAT---------AATTATATT--ATAGTTCGACATTTTCGCTT----C--TATCTAGCGTCTTC-A-----ACATTGAC-ATCTTT---CTA-C-CCGCGTTTC---------TGTTGCC-----------ATGCGATG-GCGA-G-CCT------TCTTGTAT------ACTTGA---T-ACAAAGTCG-TAAAA---------ATCTATAATAGGATA---AT---TTTTG-ACGAGCGGGCGG-ATAT--------GT-----T--TT---GATACCAGGAAA-TA---ATTATA-T------------AGTTTCAATCTCTTGTAAATACA--TGTAGATACGACGAATCTA---ACGAACTTAA---TTACAAA--C-------TG-----------GTATGT-CTTAAATTATAAAGATCTTA-A----TAAAAAAAAAAGATAC-----AGAG-TATAT-AAAGT-ACAAGAACTAATTCAGTTAACCATGATACT-AAGCTATACA-ATTGATTGGTAAAACAA--TCAACTGTAGCTGCTAAAGTGAAAATCAATGTGTATCTATTCATTCAATAAACACTTGTCCCAGGGGGTAGA-----CATTGTAGAGAAAAGTATGGAA-----AAC---------TGCATT---------------TGG---TATAAAT-----TCCTAA---GTGACGAAA----CTAAA-CTTG--ATC---TG-----TAAATATA-------TACTA-------GTAAAT----TAT----------ACGACAAA--TTTCAATTACCA-----AAATTAATGCAT----GTTA-AA-----------AA---CAATCA-CG--------CAAA-CAGG-AAACTAAGTCTTACAA-----TGTT-GTCGGAATAGGTCAACCG-----TAACAAAAATG-A--A--C---TGCATCTGTATCTATTCG-----A--TAG----GTAATCGCATGTC-AA-A----CATACTCC--TAA-GT-T---AA----AGC-ATA---GTGGAGA--------AAGGC-------C------------------------CACAAAATG--TT--------GTAAA--------ACCACTCA-------ACTGTAACGAAACTCAAT-CTTAAACTGTAAG-CATAAAGTAGGAAACTACGTATC-AAATCTCAAT-GTCAAGA--AAAAAATGTGCGGAGAA
gi|10 : aTAACCACATAAT-AA-AT-T-CAGATTCC-CCAAAGT-T---AA----AGC-ATGT--GTGGATAATGTTCAGAAAGCGTTACTCC----GA------------------TACCACGTT--TCTAAACAAAGTAAAA-------ATTGCCTACATTGTAACTGTAACAAAACTGTATACTT--TCAGTAAAACATACAGTTGTAAATCAC--ACTGAAACTTCAAC-ATCACAATCAAAGCGTG-GT-GAAAAccaagt
gi|11 : TGATGAAA----TTGAATCTTG--ATC---TG-----TAACCATA-------AACCA-------GTAAAC----CAC----------ATT-CAAATTTTTTAGCTTCCA-----AACTCACAGCATGATGGATA-AAGTGTG------AA---AAATCAgatacgaaaatccaggtg
gi|12 : G-AAACCAAGTCGTAAAAAATGATTTTGTTCAAAATAAGTCAACTG-----TAAACAAAGTAAA--A--T---TTTATCTTTCTCTGCTCA-----T--TAGCGTAGCAACAACATATCAAA-AT-T-CAGATTCCTTTAA-GT-A---ACTTAAAGC-ATA---GT-GAGA--------AAAGT-------CTGGAA-------------------CACAACATCCATT--------GTAAactgaggcagactgaccggcagacagctgaagacgaaacctacagtcctcttcaatttcaacagtaaagggactcctaaaactctgaa
gi|13 : aacatGTCCAGAA-----G-C---------TATACT---------------CCGATACCCACGT-----TTCTAA---CAAATAAAATTGCCTACATTGTA--ATC---AG-----TAAACATA-------CTGTT-------GTAAAT----CGC----------ACTTGAAA--CTTCAACATCCA-----CAATCAAAGCGT----GGTG-AA-----------AA---AGAT
gi|14 : gttaagcattgtggaatagtgCTTG--ATCAGATGGAGCTTAAACATA-------GAGTA-------GTAAAC----AGC----------ATACCAAA---TTCAGTTTCCTTATTGAAATCAAAGCATGC--GGTG-AA-----------CA---AAATacgaaaatccaggtg
gi|15 : taacacaacaccctataagtgccattaatcttcttgaAA-----AAT---------T-TATT---------------TCGG--CACAACG-----TCCCA------------------TAAACCTCGTAAAC---TG-----TAAGGA----------AAC---------TAAAC-----AC----------ATACCAAA--TTTCAGCATTCG-----ATATCAAAGCAT----GATAGAA-----------AA---AAAT--TCGGAG--AATTAAAGGCAG-AAataggaaacaa
gi|15 : tttgtT-CGTAAACTGTAAG-GA---AAC--TAAAC-ACATACC-AAATTTCAGCATTCGATATCAAAGCATG-ATAGAAAAgaatga
gi|16 : tttgtaaaatttatttcggcacaacgtcccataaaccTCAGAT-----T---TTTGA-ACGAACGGGCGG-ATATTATATATATT-----T--TT---AATGCCAGGA------------------------------TTTCGATCTCGTGCAAATGGA--T---GA------------G---AC-AACTCAATGCTTACAAA--T-------TG-----------GAATTCGTTTAAATCAaaattcggagaattaaaggcagaagaatga
gi|17 : ttgCAAGAATTAATATGGTCAACCATGAGACTTACGACTTAAATA--GCT--------CAAATTAA--AGTAG-TGC--AACTAAAACTTGCTGTGTATCTTCTCTTTTGATAATCACACG
gi|18 : TGTTAACAATCATCAGCAAT----CGA-AGAT-GTCTTTATCATCACGTCAAACAA-GCTTCATTCGTATCgaaaaaatt
gi|19 : tggaatttttattatttcactttttggaatgtttttttaagtaactAACCG-----CAAAACAAGT--G--AGAC---TTGACCGGCGTCCCCTCATTACCG--TAG----GTGACTACACACC-AAGATGT-CAGATTCT-TAAG-GTAC---AT----GTG-ATA---GTGGGAA--------AAA
gi|2 : TCTAC--ATTCAATAA----TAGTCT-----GATAAATCTCGTATCGTAGTGGAAAGTCAAGAACCAACAACAAAGTCTGATAAATC---------------TCA---TAAAAATCGGTTTACT-----GTGACAAAA----CTTGATCTTG--ATC---TG-----TAA-CTTA-------------------GTAAAT----CAT----------ATACCAAA--T-----CTTCCT-----AAATCAAATCAC----GGTA-AAGTGTGGAATACAA---AAATCATCGAAGTTCATTAAAATCAGGAAATTAAGTCTTACAA-----TTTTCATGAGAATAAATCAGCCGTACGATAACAAAAGT--A--A--CAAAAACATCTGTATCTATTCT-----AATTAA----GTGACCATGTATC-AA-AT-T--------T-TTAA-GT-CTGGAT----ATCTATATTTGCAGGCAC-------AAATT-------C----C-------------------CAT-AAATT--TG--------GTAAAC-------ATCACTTA-------AATGGGATGAAACTTGAT-TTcccgga
gi|20 : --------TT-----T--TT---GACATCAGGAAAATA---TCT-TAAT------------A-TTATGATCTCTTGTAAATAAA--T---G---CAGGAAATATG---ACGAACTTGA---TTACAAA--T-------TG-----------GCATGC-CTTTAATTAg
gi|21 : gattaATCTCTTGCAAAT---------GATGTGGTGAATCTA---AT-AACTTGA---TTA-AAACTT-------TG-----------GTGTGC-CTTAAATTATACAGAaag
gi|22 : aAAGGTCTGGAA-----AAC---------TACACT---------------TTG---CAAAAAG-----TCCCA
gi|3 : -TGAACAACA-------AAGTAC---------A-T-ATAT---ACAGATCAGCCATTTCACTT----C--CTTC-AGCGCCTTCCATGGCCACATTCGC-ATCTTA---TTG-CATCAC-TTTCACTAGAGAGTGACGCC-----------AT---ATG-G-GG-G-TCTA-CAACTCTTTTGT------GTTTAAAAATAACAAGA--A-AAGAA---------ATTTATAATCTGATG---TT---TTTGG-ATAAGTGGG--------------------------TT---GATATTA-------------T-TA-T------------AAGTCCAATCTCTTTTAAATAAATGT---GATGC----ATTCTGTTCATGAAATTGA---TTACAAA--TAGACACATGTATCAGTACATGTATGT-CCTAAA-TATAAAG-------------AAAATAGAAAAATAC---AAAGAACTA-ATCAGAG-AACAAATATTGAGTCATT--ACTACAAGACTGGAGTTTTATATATTGTTTGTTAGAGTAACTTCAACTGTtcaatct
gi|4 : --AACGGCAG-TTATCTTTATCGGC-CATCAAACGACACTTCATT-------GTTTTCCTCAGCCCAGAGTTCTATTGC---T--GT---------CG-------TAGGAA---------AAT-CTGCTGAACAAT---GAACTTTTGCTTAGAACTACATC-AACATGTTG-A-----ACCT--ACTACCCCT---TTA-C-CTACCTTTC---------TGTTGCC-----------AAGTCATGTGCG--------------TTTGTATAAAAAGACAAAA---AAACAAAA--ACAAAAAAAAAACACCATCTATAATCGGATATGCATGCATTTAC-ACGATTGTGCGGAATAT--------TT-----T--TT---
gi|4 : aTAT--------TT-----T--TTTTGGATACAAGGAAA-TATAAATT-T--T------------GATTT-GGTCTCGTCTAAATA--------GATGCGGCGAATCGG---ACGAACTCGA---TTACAAA--T-------AG-----------G-ATGC-TTTAAATTAtttttaattcatttattatttacttattttttttggatacaaggaaatataaattttgatttggtctcgtctaaatagatgcggcgaatcggacgaactcgattacaaataggatgctttaaatta
gi|5 : aaacggcagttatctttatcggccatcaaacgacacttcattgttttcctcagcccagagttctattgctgtcgtaggaaaatctgctgaacaatgaacttttgcttagaactacatcaacatgttgaacctactacccctttacctacctttctgttgccaagtcatgtgcgtttgtataaaaagacaaaaaaacaaaaacaaaaaaaaaacaccatctataatcggatatgcatgcatttacacgattgtgcggaatatttttttttttaattcatttattatttact--TAG----GTAACCAAATATC-AT-AT-TTCAGATTCC-TTAAAGT-T---AC----AGC-ATA---ATGAAAA--------AAAGT-------C----GTCTGGAAAACTATACTTAGCACAAAGTC--CC--------ATAAATCTCACAAATCACTCA-------ACTGTGACAAAACTT----C---AACTGTAAA-CATACAACAGTAAACTACGTACC-AAATTTCAGC-TTCCAAATCAAAACATG-GTAGAAAA
gi|6 : tatctatatgcatACCTCCAGTA-GTC-TAAACATTG-------AAGCAG---------A-------T--AAAGATCAGTATTTTCATTT----C--TGTCTAGCTTCTT--------ACAGTCAC-AACTTTATTCTATC-CCATGTATC---------TGTCTCTTTAGGGTTTATATATGATG-CTTA-GATCT-------CTTGTGT------GTTAGA---TAATGAGT--A-TAAAA---------ATTTATTGTTGGA-A---AT---TTTAGGACAAGCAGGTGA-ATAT--------TTATTTTT--TT---AATGCCAGGAAA-TA----------T------------GATTTCAATTTCTTGCAAATAGA--T----ATATGGAAAACCTG---ACAAACTCAA---TCACTAA--T-------TG-----------GTATGT-CCTAAATTATATAGATCTCA-aaagttaaaaaaacaagtgggacaaaagattgataaacagatgcagaagagacaagtacagagttccctccaagtattattgttaggggactacaaccccaaaccacttgaa
gi|7 : ATTGTAGAGAAA-TTCCGGAA-----AAT---------TATATTCAACTCCAACAACTCTCG---TAAAAAT-----AGCTCATCTGTGACAAAA--------A-CTTG--ATA---TG-----TAAACATACCATTGTAAACAATGCTATGTAAACATATCATTGTAAACAAAATGCCAAA--ATTCAGCTTCCT-----AAATCAAAACAT----GGTG-AA-----------AACAGAAATCA---AAATTCATTCAA--------------CCTTTCAA-----TTTTTGTTAAAATGCGTCAACTA-----TAGGGAAAGT--ACGA--C---CTGATCTGTATCAACT-G-----A--T-------T--TGGTAT-TT-AA----C-CACATTCC-TT-A-GT-C---AT----GGC-ATA---GTcat
gi|8 : ATGGGATT---AT---TTTTGGATGATCGGGCGG-ATGC--------TT-----TATTT---ACTACCAGAAAAATA---ATA-TA-TGATTACATGTACAATTTCGATCTCTCCTAAATAAA-------A-GCGGTGGACCGG---ATGGAGTATG---TTACAAA--T--------A-----------GTA-------GAATTATATAAATCTCACACTTCTACAA------ACTACTTTGAA---CTAGAT-AGAGTTACAAGAATTGATTAGGTCAACCACGA-----GAGC---------TGCTT--------AAC-TCAGAGGTAG-TGT--AAGTAGAACTTGCTGTGTATCTACTCTTTTCATGAGCACATGGAC-----AATAAA
gi|9 : ACGATCATCTGCAA---AATGT----T-GCCATGATCATCATTTCAAACAACCCTTT-TTCGTATCCGCTGTC-TC------GAGTTC---CATTA-TTCGTTAGGAACAACCTAACCCCAAGCATCTAGAGACCAGT-ATTTT---TGGTTCCG-ACGCTGGCTT----C---ACTTAGCGTCTTC-A-----AAATTCAC-GACTTT---CTA-C-CAGCGTTTA---------TGTCGTC-----------ACGTGAAG-ACTATA-TCTATC---TCTTGTGT------GTTTGA---TAACAAAG--gatt
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 2222 111 2222222222 6666666666666666666666666666666666666666666666666666 2222222 1 22222222 111 333333333 888888888888888888888888888888888888 111 6666666666666666666 111 2222 111111111 1 222222222222222222 66666666666666666666666666 22222222222222222 33333333333333333333333 4444444444444 1 22 2 1 1 1111 11 55555555555555555555555555555 11 11 1 11 111 33333 2222 11 44444444444444444444444444444444444444444444 11111 22222 11111 111 11111 4444444444444444444 33333333333333333 111 111111 22222222222 111 44444444444444444444 22222 11 22222 333333333333333 333333333333333 1111 1111111 1 222222222222222 111 33333333 11111111111111111111111111111111 3333333333333 44444444 3333333 222222222 11 1 1 1
lowQualScore : 1 0 4444 444 3 3 4 33 3 2 666 88 3333333333 6 4 4444444444444444444444444444444444444444444444444444 1 22 6 8 1 8888888 0 88888888 0 8 1 444 8 8 5 222222222 444444444444444444444444444444444444 8 444 0 2222222222222222222 222 1 1111 1 999999999 1 3 1 1 6 222222222222222222 888 1 99999999999999999999999999 99999999999999999 888 4 1 888 22222222222222222222222 2 5 1 3 0 4444444444444 3 88 77 6 3 3 3333 33 8 55555555555555555555555555555 88 33 3 88 0 3 1 4 33 111 33333 3333 2 1 44 1 77777777777777777777777777777777777777777777 1 66666 1 22222 2 99999 33 9 77 000 44444 3 1 2222222222222222222 22222222222222222 44 111 555555 77 5 77777777777 000 2 22222222222222222222 7 55555 33 0 0 00000 1 444444444444444 444444444444444 4444 0 0 5 1111111 0 55 1 777777777777777 555 1 1 00000000 11111111111111111111111111111111 5 0 6666666666666 33333333 2 2222222 111111111 6 44 0 6 3 0 1 9 7 0 3 2
lowQualScore : . . .... ... . . . .. . . ... .. .......... . . .................................................... . .. . . . ....... . ........ . . . ... . . . ......... .................................... . ... . ................... ... . .... . ......... . . . . . .................. ... . .......................... ................. ... . . ... ....................... . . . . . ............. . .. .. . . . .... .. . ............................. .. .. . .. . . . . .. ... ..... .... . . .. . ............................................ . ..... . ..... . ..... .. . .. ... ..... . . ................... ................. .. ... ...... .. . ........... ... . .................... . ..... .. . . ..... . ............... ............... .... . . . ....... . .. . ............... ... . . ........ ................................ . . ............. ........ . ....... ......... . .. . . . . . . . . . .
lowQualScore : 0 7 3333 555 5 2 2 55 2 5 999 33 7777777777 7 2 7777777777777777777777777777777777777777777777777777 4 22 4 2 4 0000000 6 88888888 8 0 0 000 0 0 0 000000000 000000000000000000000000000000000000 0 000 8 0000000000000000000 444 0 2222 0 777777777 0 3 0 0 7 555555555555555555 888 4 00000000000000000000000000 11111111111111111 888 5 1 888 11111111111111111111111 2 0 0 2 2 0000000000000 3 00 33 7 3 3 5555 88 8 55555555555555555555555555555 00 22 3 33 7 2 0 2 55 222 33333 5555 0 2 88 4 88888888888888888888888888888888888888888888 0 77777 0 88888 2 33333 33 8 99 000 33333 6 4 1111111111111111111 33333333333333333 00 777 333333 99 7 11111111111 000 5 88888888888888888888 0 00000 00 2 8 00000 0 444444444444444 000000000000000 2222 1 3 7 6666666 7 99 4 333333333333333 777 0 0 88888888 22222222222222222222222222222222 6 6 8888888888888 22222222 0 5555555 222222222 7 00 7 7 3 7 0 0 3 7 3 3
consensus : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAA-------CGAAGCA---------NAAT-ATATT--ACAGTTCGGCACTTTCGCTT----C--CGTCTAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGCGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------------CAAAG--ANAAAA----ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAAT---G--ATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA-ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAA---GTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC----TCG-----G--TAG----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTG-GTGGAAAA
Reference ( family-3911 ) : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-CC--GAGTTCTACCGCCA-T--GTT-TGAACAA-------CGAAGCA---------NAAT-ATATT--ACAGTTCGGCACTTTCGCTT----C--CATCTAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGTGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------------CAAAG--ANAAAA----ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAAT---G--ATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAAAAGAAAA-ATACGAAGAGCTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACNGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACNCGTCC-----GATAAATCTCGCATCGTAGAGAAA-AGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAA---GTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----NAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAGNC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC----TCG-----A--TAG----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTTAAACTGTAAG-CATACAGCAGTAAACTACGTACC-AAATTTCAGCNTCGAAATCAAAGCATG-GTAGAAAA
gi|1 : TGTAAACGGCCGTCTGCAATTAAACGA-AGATGTCTTTATAGTCACATAAAACAACTCTTCATTCGTACATGC-ATCCTCAGGTC--GAGTTCTACCACCA-T--GTTCTGAACGA-------TGAAACA---------TAATTATATT--ATAGTTCGACATTTTCGCTT----C--TATCTAGCGTCTTC-A-----ACATTGAC-ATCTTT---CTA-C-CCGCGTTTC---------TGTTGCC-----------ATGCGATGGCGA-G-CCT------TCTTGTATACTTG-A---T-A-------------------CAAAGTCGTAAAA----ATCTATAATAGGATA---AT---TTTTG-ACGAGCGGGCGG-ATAT--------GT-----T--TT---GATACCAGGAAA-TA---ATTATAT------------AGTTTCAATCTCTTGTAAATACATGTAG--ATACGACGAATCTA---ACGAACTTAA---TTACAAA--C-------TG-----------GTATGT-CTTAAATTATAAAGATCTTA-A----TAAAAAAAAAAGATAC--AGAG-TATAT-AAAG-TACAAGAACTAATTCAGTTA--ACCATGATACT-AA-GCTATACA-ATTGATTGG-TAAAACAA--TCAACTGTAGCTGCTAAAGTGAAAATCAATGTGTATCTATTCATTCAATAAACACTTGTCCCAGGGGGTAGA-----CATTGTAGAGAAA-AGTATGGAA-----AAC---------TGCATT---------------TGG---TATAAAT-----TCCTAA---GTGACGAAA----CTAAA-CTTG--ATC---TG-----TAAATATA-------TACTA-------GTAAAT----TAT----------ACGACAAA--TTTCAATTACC-----AAAATTAATGCAT--GTT-AAA-----------AA---CAATCA-CG-----C----AAACA-GGAAACTAAGTCTTACAA-----TGTT-GTCGGAATAGGTCAACCG-----TAACAAAAATG-A--A--C---TGCATCTGTATCTAT----TCG-----A--TAG----GTAATCGCATGTC-AA-A----CATACTCC--TAA-GT-TAA----AG-----CATA---GTGGAGA--------AAGGC-------C------------------------CACAAAATG--TT--------GTAAA--------ACCACTCA-------ACTGTAACGAAACTCAAT-CTTAAACTGTAAG-CATAAAGTAGGAAACTACGTATC-AAATCTCAATGTCAAGA--AAAAAATGTGCGGAGAA
gi|10 : aTAACCACATAAT-AA-AT-T-CAGATTCC-CCAAAGT-TAA----AG-----CATGT--GTGGATAATGTTCAGAAAGCGTTACTCC----GA------------------TACCACGTT--TCTAAACAAAGTAAAA-------ATTGCCTACATTGTAACTGTAACAAAACTGTATACTTTCA--GTAAAACATACAGTTGTAAATCAC--ACTGAAACTTCAACATCACAATCAAAGCGTG-GT-GAAAAccaagt
gi|11 : TGATGAAA----TTGAATCTTG--ATC---TG-----TAACCATA-------AACCA-------GTAAAC----CAC----------ATT-CAAATTTTTTAGCTTCC-----AAACTCACAGCAT--GAT-GGA-----------TA---AAGTgatacgaaaatccaggtg
gi|12 : GAAACCAAGTCGTAAAAAATGATTTTGTTCAAAATAAGTCAACTG-----TAAACAAAGTAAA--A--T---TTTATCTTTCTCTGC----TCA-----T--TAGCGTAGCAACAACATATCAAA-AT-T-CAGATTCCTTTAA-GT-AACTTAAAG-----CATA---GT-GAGA--------AAAGT-------CTGGAA-------------------CACAACATCCATT--------GTAAgtgaaaaatcaactgaggcagactgaccggcagacagctgaagacgaaacctacagtcctcttcaatttcaacagtaaagggactcctaaaactctgaa
gi|13 : aacatGCATTGTGGAATAGTGGTCCAGAA-----G-C---------TATACT---------------CCGATACCCACGT-----TTCTAA---CAAATAAAATTGCCTACATTGTA--ATC---AG-----TAAACATA-------CTGTT-------GTAAAT----CGC----------ACTTGAAA--CTTCAACATCC-----ACAATCAAAGCGT--GGT-GAA-----------AA---AGAT
gi|14 : gttaaCTTG--ATCAGATGGAGCTTAAACATA-------GAGTA-------GTAAAC----AGC----------ATACCAAA---TTCAGTTTCCTTATTGAAATCAAAGCATGCGGT-GAA-----------CA---AAATacgaaaatccaggtg
gi|15 : taacacaacaccctataagtgccattaatcttcttgaAA-----AAT---------T-TATT---------------TCGG--CACAACG-----TCCCA------------------TAAACCTCGTAAAC---TG-----TAAGGA----------AAC---------TAAAC-----AC----------ATACCAAA--TTTCAGCATTC-----GATATCAAAGCAT--GATAGAA-----------AA---AAAT--TCGGAG--AATTAAAGGC-AGAAataggaaacaa
gi|16 : tttgtTCAGAT-----T---TTTGA-ACGAACGGGCGG-ATATTATATATATT-----T--TT---AATGCCAGG-----------------------------ATTTCGATCTCGTGCAAATGGAT---G--A------------G---AC-AACTCAATGCTTACAAA--T-------TG-----------GAATTCGTTTAAATCAgaatga
gi|17 : ttgCAAGAATTAATATGGTCA--ACCATGAGACT-TACGACTTAAATA--GCT---------CAAATTAAA--GTAG-TGC--AACTAAAACTTGCTGTGTATCTTCTCTTTTGATAATCACACG
gi|18 : TGTTAACAATCATCAGCAAT----CGA-AGATGTCTTTATCATCACGTCAAACAA-GCTTCATTCGTATCgaaaaaatt
gi|19 : tggaatttttattatttcactttttggaatgtttttttaagtaactAACCG-----CAAAACAAGT--G--AGAC---TTGACCGGCGTCCCC----TCATTACCG--TAG----GTGACTACACACC-AAGATGT-CAGATTCT-TAAG-GTACAT----GT-----GATA---GTGGGAA--------AAA
gi|2 : TCTAC--ATTCAATAAT-A---GTCT-----GATAAATCTCGTATCGTAGTGGAA-AGTCAAGAACCAACAACAAAGTCTGATAAATC---------------TCA---TAAAAATCGGTTTACT-----GTGACAAAA----CTTGATCTTG--ATC---TG-----TAA-C------------TTA-------GTAAAT----CAT----------ATACCAAA--T-----CTTCC-----TAAATCAAATCAC--GGT-AAAGTGTGGAATACAA---AAATCATCGAAGTTCATTAAAATCAGGAAATTAAGTCTTACAA-----TTTTCATGAGAATAAATCAGCCGTACGATAACAAAAGT--A--A--CAAAAACATCTGTATCTAT----TCT-----AATTAA----GTGACCATGTATC-AA-AT-T--------T-TTAA-GT-C-T----GGATATCTATATTTGCAGGCAC-------AAATT-------C----C-------------------CAT-AAATT--TG--------GTAAAC-------ATCACTTA-------AATGGGATGAAACTTGAT-TTcccgga
gi|20 : --------TT-----T--TT---GACATCAGGAAAATA---TCT-TAA------------TATTATGATCTCTTGTAAATAAAT---G-----CAGGAAATATG---ACGAACTTGA---TTACAAA--T-------TG-----------GCATGC-CTTTAATTAg
gi|21 : gattaATCTCTTGCAAAT-------G--ATGTGGTGAATCTA---AT-AACTTGA---TTA-AAACTT-------TG-----------GTGTGC-CTTAAATTATACAGAaag
gi|22 : aAA-GGTCTGGAA-----AAC---------TACACT---------------TTG---CAAAAAG-----TCCCA
gi|3 : -TGAACAA-------CAAAGTA---------CA-T-ATAT---ACAGATCAGCCATTTCACTT----C--CTTC-AGCGCCTTCCATGGCCACATTCGC-ATCTTA---TTG-CATCAC-TTTCACTAGAGAGTGACGCC-----------AT---ATGG-GG-G-TCTA-CAACTCTTTTGTGTTTA-AAAATAA-------------------CAAGA--AAAGAA----ATTTATAATCTGATG---TT---TTTGG-ATAAGTGGG--------------------------TT---GATATTA-------------T-TAT------------AAGTCCAATCTCTTTTAAATAAAT---GTGATGC----ATTCTGTTCATGAAATTGA---TTACAAA--TAGACACATGTATCAGTACATGTATGT-CCTAAAT-ATAAAGA------------AAATAGAAAA-ATACAAAGAACTA-ATCAGAG-AACAAATATTGA----GTCATTACTACAAGACTGGA-GTTTTATATATTGTTT-GTTAGAGTAACTTCAACTGTtcaatct
gi|4 : --AACGGCAGTTATCTTTATCGGC-CATCAAACGACACTTCATT-------GTTTTCCTCAG-CCCAGAGTTCTATTGC---T--GT----------------CGTAGGA---------AAAT-CTGCTGAACAAT---GAACTTTTGCTTAGAACTACATC-AACATGTTG-A-----ACCT--ACTACCCCT---TTA-C-CTACCTTTC---------TGTTGCC-----------A----------A-G-TC-A--------TGTGCGTTTGTA---TAAAAAGACAAAAAAACAAAAACAAAA--AAAAAACACCATCTATAATCGGATATGCATGCATTTAC-ACGATTGTGCGGAATAT--------TT-----T--TT---
gi|4 : aTAT--------TT-----T--TTTTGGATACAAGGAAA-TATAAATT-T-T------------GATTT-GGTCTCGTCTAAATA------G--ATGCGGCGAATCGG---ACGAACTCGA---TTACAAA--T-------AG-----------G-ATGC-TTTAAATTAtttttaattcatttattatttacttattttttttggatacaaggaaatataaattttgatttggtctcgtctaaatagatgcggcgaatcggacgaactcgattacaaataggatgctttaaatta
gi|5 : aaacggcagttatctttatcggccatcaaacgacacttcattgttttcctcagcccagagttctattgctgtcgtaggaaaatctgctgaacaatgaacttttgcttagaactacatcaacatgttgaacctactacccctttacctacctttctgttgccaagtcatgtgcgtttgtataaaaagacaaaaaaacaaaaacaaaaaaaaaacaccatctataatcggatatgcatgcatttacacgattgtgcggaatatttttttttttaattcatttattatttact--TAG----GTAACCAAATATC-AT-AT-TTCAGATTCC-TTAAAGT-TAC----AG-----CATA---ATGAAAA--------AAAGT-------C----GTCTGGAAAACTATACTTAGCACAAAGTC--CC--------ATAAATCTCACAAATCACTCA-------ACTGTGACAAAACT---T-C---AACTGTAAA-CATACAACAGTAAACTACGTACC-AAATTTCAGCTTCCAAATCAAAACATG-GTAGAAAA
gi|6 : tatctatatgcatACCTCCAGTA-GTC-TAAACAT-------TGAAGCA---------GA-------T--AAAGATCAGTATTTTCATTT----C--TGTCTAGCTTCTT--------ACAGTCAC-AACTTTATTCTATC-CCATGTATC---------TGTCTCTTTAGGGTTTATATATGATGCTTA-GATCT-------CTTGTGTGTTAG-A---TAA-------------------TGAGT--ATAAAA----ATTTATTGTTGGA-A---AT---TTTAGGACAAGCAGGTGA-ATAT--------TTATTTTT--TT---AATGCCAGGAAA-TA---------T------------GATTTCAATTTCTTGCAAATAGAT------ATATGGAAAACCTG---ACAAACTCAA---TCACTAA--T-------TG-----------GTATGT-CCTAAATTATATAGATCTCA-aaagttaaaaaaacaagtgggacaaaagattgataaacagatgcagaagagacaagtacagagttccctccaagtattattgttaggggactacaaccccaaaccacttgaa
gi|7 : ATTGTAGAGAAA--TTCCGGAA-----AAT---------TATATTCAACTCCAACAACTCTCG---TAAAAAT-----AGCTCATCTGTGACAAAA--------A-CTTG--ATA---TG-----TAAACATACCATTGTAAACAATGCTATGTAAACATATCATTGTAAACAAAATGCCAAA--ATTCAGCTTCC-----TAAATCAAAACAT--GGT-GAA-----------AACAGAAATCA---AAATTCATT-----C----AAC-----CTTTCAA-----TTTTTGTTAAAATGCGTCAACTA-----TAGGGAAAGT--ACGA--C---CTGATCTGTATCAACTGATTTG-----G--TAT----TTAACCAC-----------------ATTCC-TT-A-GT-CAT----GG-----CATA---GTcat
gi|8 : ATGGGATT---AT---TTTTGGATGATCGGGCGG-ATGC--------TT-----TATTT---ACTACCAGAAAAATA---ATA-TATGATTACATGTACAATTTCGATCTCTCCTAAATAAA-------A-GCGGTGGACCGG---ATGGAGTATG---TTACAAA----------TA-----------GTA-------GAATTATATAAATCTCACACTTCTA-----CAAA-CTACTTTGAACTAGAT-AGAGTTACAAGAATTGATTAGGTCA--ACCACGA-----GA-GC---------TGCTT---------AAC-TCAGAGGTAG-TGT--AAGTAGAACTTGCTGTGTATCTACTCTTTTCATGAGCACATGGAC-----AATAAA
gi|9 : ACGATCATCTGCAA---AATGT----TGCCATGATCATCATTTCAAACAACCCTTT-TTCGTATCCGCTGTC------TC--GAGTT---CCATTA-TTCGTTAGGAACAACCTAACCCCAAGCATCTAGAGACCAGT-AT-TT--TTGGTTCCG-ACGCTGGCTT-------CACTTAGCGTCTTC-A-----AAATTCAC-GACTTT---CTA-C-CAGCGTTTA---------TGTCGTC-----------ACGTGAAGACTATA-TCTATC---TCTTGTGTGTTTG-A---TAA-------------------CAAAG--gatt
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 2222 111 1111111111 33333333333 44444444444 11 555555555555555555555555 22222222 111 333333333 888888888888888888888888888888888888 111 6666666666666666666 111 2222 111111111 1 222222222222222222 66666666666666666666666666 22222222222222222 33333333333333333333333 4444444444444 11 33 2 1 1 1111 11 55555555555555555555555555555 11 11 1 11 1 33333 2222 55555555555555555555555555555555555555555555555555555555 11 11111 111 11111 4444444444444444444 33333333333333333 111 111111 22222222222 111 33333333333333333333 22222 11 22222 333333333333333 333333333333333 1111 1111111 1 222222222222222 111 33333333 11111111111111111111111111111111 3333333333333 44444444 3333333 33333333333 1 1
lowQualScore : 1 0 4444 444 3 3 4 33 3 2 666 88 9999999999 7 0 4 22222222222 1 8 1 44444444444 3 00 4 1 4 333333333333333333333333 88888888 0 8 1 444 8 8 5 222222222 666666666666666666666666666666666666 8 444 0 2222222222222222222 222 1 1111 1 999999999 1 3 1 1 6 222222222222222222 888 1 99999999999999999999999999 99999999999999999 888 4 1 888 22222222222222222222222 2 5 1 3 0 9999999999999 88 66 6 6 3 3 3333 33 8 55555555555555555555555555555 88 11 3 88 0 3 1 4 33 0 33333 3333 1 99 1 22222222222222222222222222222222222222222222222222222222 44 2 99999 666 77 000 44444 3 1 2222222222222222222 22222222222222222 44 111 888888 77 5 77777777777 000 2 99999999999999999999 7 55555 33 0 0 00000 1 444444444444444 555555555555555 4444 0 0 5 1111111 0 55 1 777777777777777 555 1 1 00000000 11111111111111111111111111111111 5 0 6666666666666 33333333 2 2222222 00000000000 3 6 3 3 6
lowQualScore : . . .... ... . . . .. . . ... .. .......... . . . ........... . . . ........... . .. . . . ........................ ........ . . . ... . . . ......... .................................... . ... . ................... ... . .... . ......... . . . . . .................. ... . .......................... ................. ... . . ... ....................... . . . . . ............. .. .. . . . . .... .. . ............................. .. .. . .. . . . . .. . ..... .... . .. . ........................................................ .. . ..... ... .. ... ..... . . ................... ................. .. ... ...... .. . ........... ... . .................... . ..... .. . . ..... . ............... ............... .... . . . ....... . .. . ............... ... . . ........ ................................ . . ............. ........ . ....... ........... . . . . .
lowQualScore : 0 7 3333 555 5 2 2 55 2 5 999 33 0000000000 3 2 2 99999999999 0 0 0 00000000000 2 44 6 4 6 444444444444444444444444 88888888 8 0 0 000 0 0 0 000000000 888888888888888888888888888888888888 0 000 8 0000000000000000000 444 0 2222 0 777777777 0 3 0 0 7 555555555555555555 888 4 00000000000000000000000000 11111111111111111 888 5 1 888 11111111111111111111111 2 0 0 2 2 7777777777777 33 77 7 7 3 3 5555 88 8 55555555555555555555555555555 00 88 3 33 7 2 0 2 55 5 33333 5555 2 44 4 77777777777777777777777777777777777777777777777777777777 00 2 33333 333 99 000 33333 6 4 1111111111111111111 33333333333333333 00 777 333333 99 7 11111111111 000 5 22222222222222222222 0 00000 00 2 8 00000 0 444444444444444 000000000000000 2222 1 3 7 6666666 7 99 4 333333333333333 777 0 0 88888888 22222222222222222222222222222222 6 6 8888888888888 22222222 0 5555555 88888888888 3 7 3 7 7
consensus : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-AAGCANAA-T-ATACT--ANAGATCAGCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGCGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------------CAAAG--ANAAAA----ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA--ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC----TC--G-----NTAG----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
Reference ( family-3911 ) : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-AAGCANAA-T-ATATT--ACAGTTCGGCACTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGCGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------------CAAAG--ANAAAA----ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA--ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC----TC--G-----GTAG----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGTGGAAAA
gi|1 : TGTAAACGGCCGTCTGCAATTAAACGA-AGATGTCTTTATAGTCACATAAAACAACTCTTCATTCGTACATGC-ATCCTCAGGTC--GAGTTCTACCACCA-T--GTTCTGAACGATG-AAACATAA-TTATATT--ATAGTTCGACATTTTCGCTT----C--TA---------TC---TAGCGTCTTC-A-----ACATTGAC-ATCTTT---CTA-C-CCGCGTTTC---------TGTTGCC-----------ATGCGATGGCGA-G-CCT------TCTTGTATACTTG-A---T-A-------------------CAAAGTCGTAAAA----ATCTATAATAGGATA---AT---TTTTG-ACGAGCGGGCGG-ATAT--------GT-----T--TT---GATACCAGGAAA-TA---ATTATAT------------AGTTTCAATCTCTTGTAAATACA--TGTAGATACGACGAATCTA---ACGAACTTAA---TTACAAA--C-------TG-----------GTATGT-CTTAAATTATAAAGATCTTA-A----TAAA-AAAAAAAGATAC--AGAG-TATAT-AAAG-TACAAGAACTAATTCAGTTA--ACCATGATACT-AA-GCTATACA-ATTGATTGG-TAAAACAA--TCAACTGTAGCTGCTAAAGTGAAAATCAATGTGTATCTATTCATTCAATAAACACTTGTCCCAGGGGGTAGA-----CATTGTAGAGAAA-AGTATGGAA-----AAC---------TGCATT---------------TGG---TATAAAT-----TCCTAAGTGACGAAA----CTAAA-CTTG--ATC---TG-----TAAATATA-------TACTA-------GTAAAT----TAT----------ACGACAAA--TTTCAATTACC-----AAAATTAATGCAT--GTT-AAA-----------AA---CAATCA-CG-----C----AAACA-GGAAACTAAGTCTTACAA-----TGTT-GTCGGAATAGGTCAACCG-----TAACAAAAATG-A--A--C---TGCATCTGTATCTAT----TC--G-----ATAG----GTAATCGCATGTC-AA-A----CATACTCC--TAA-GT-TAA----AG-----CATA---GTGGAGA--------AAGGC-------C------------------------CACAAAATG--TT--------GTAAA--------ACCACTCA-------ACTGTAACGAAACTCAAT-CTTAAACTGTAAG-CATAAAGTAGGAAACTACGTATC-AAATCTCAATGTCAAGAAAAAAATGT-GCGGAGAA
gi|10 : aTAACCACATAAT-AA-AT-T-CAGATTCC-CCAAAGT-TAA----AG-----CATGT--GTGGATAATGTTCAGAAAGCGTTACTCC----GA------------------TACCACGTT--TCTAAACAAAGTAAAA-------ATTGCCTACATTGTAACTGTAACAAAACTGTATACTT-T-CAGTAAAACATACAGTTGTAAATCAC--ACTGAAACTTCAACATCACAATCAAAGCGTGGTGAAAAccaagt
gi|11 : TGATGAAA----TTGAATCTTG--ATC---TG-----TAACCATA-------AACCA-------GTAAAC----CAC----------ATT-CAAATTTTTTAGCTTCC-----AAACTCACAGCAT--GAT-GGA-----------TA---AAGTgatacgaaaatccaggtg
gi|12 : GAAACCAAGTCGTAAAAAATGATTTTGTTCAAAATAAGTCAACTG-----TAAACAAAGTAAA--A--T---TTTATCTTTCTCTGC----TC--A-----TTAGCGTAGCAACAACATATCAAA-AT-T-CAGATTCCTTTAA-GT-AACTTAAAG-----CATA---GT-GAGA--------AAAGT-------CTGGAA-------------------CACAACATCCATT--------GTAAgtgaaaaatcaactgaggcagactgaccggcagacagctgaagacgaaacctacagtcctcttcaatttcaacagtaaagggactcctaaaactctgaa
gi|13 : aacatGCATTGTGGAATAGTGGTCCAGAA-----G-C---------TATACT---------------CCGATACCCACGT-----TTCTAACAAATAAAATTGCCTACATTGTA--ATC---AG-----TAAACATA-------CTGTT-------GTAAAT----CGC----------ACTTGAAA--CTTCAACATCC-----ACAATCAAAGCGT--GGT-GAA-----------AA---AGAT
gi|14 : gttaaCTTG--ATCAGATGGAGCTTAAACATA-------GAGTA-------GTAAAC----AGC----------ATACCAAA---TTCAGTTTCCTTATTGAAATCAAAGCATGCGGT-GAA-----------CA---AAATacgaaaatccaggtg
gi|15 : taacacaacaccctataagtgccattaatcttcttgaAA-----AAT---------T-TATT---------------TCGG--CACAACG-----TCCCA---------------TAAACCTCGTAAAC---TG-----TAAGGA----------AAC---------TAAAC-----AC----------ATACCAAA--TTTCAGCATTC-----GATATCAAAGCAT--GATAGAA-----------AA---AAAT--TCGGAG--AATTAAAGGC-AGAAataggaaacaa
gi|16 : tttgtTCAGAT-----T---TTTGA-ACGAACGGGCGG-ATATTATATATATT-----T--TT---AATGCCAGG-----------------------------ATTTCGATCTCGTGCAAATGGA--T---GA------------G---AC-AACTCAATGCTTACAAA--T-------TG-----------GAATTCGTTTAAATCAgaatga
gi|17 : ttgCAAGAATTAATATGGTCA--ACCATGAGACT-TACGACTTAAATA--GCT---------CAAATTAAA--GTAG-TGC--AACTAAAACTTGCTGTGTATCTTCTCTTTTGATAATCACACG
gi|18 : TGTTAACAATCATCAGCAAT----CGA-AGATGTCTTTATCATCACGTCAAACAA-GCTTCATTCGTATCgaaaaaatt
gi|19 : tggaatttttattatttcactttttggaatgtttttttaagtaactAACCG-----CAAAACAAGT--G--AGAC---TTGACCGGCGTCCCC----TC--ATTACCGTAG----GTGACTACACACC-AAGATGT-CAGATTCT-TAAG-GTACAT----GT-----GATA---GTGGGAA--------AAA
gi|2 : TCTAC--ATTCAATAAT---A-GTCT-----GATAAATCTCGTATCGTAGTGGAA-AGTCAAGAACCAACAACAAAGTCTGATAAATC---------------TCA---TAAAAATCGGTTTACT--GTGACAAAA----CTTGATCTTG--ATC---TG-----TAA-C------------TTA-------GTAAAT----CAT----------ATACCAAA--T-----CTTCC-----TAAATCAAATCAC--GGT-AAAGTGTGGAATACAA---AAATCATCGAAGTTCATTAAAATCAGGAAATTAAGTCTTACAA-----TTTTCATGAGAATAAATCAGCCGTACGATAACAAAAGT--A--A--CAAAAACATCTGTATCTAT----TCTAA-----TTAA----GTGACCATGTATC-AA-AT-T--------T-TTAA-GT-C-T----GGATATCTATATTTGCAGGCAC-------AAATT-------C----C-------------------CAT-AAATT--TG--------GTAAAC-------ATCACTTA-------AATGGGATGAAACTTGAT-TTcccgga
gi|20 : --------TT-----T--TT---GACATCAGGAAAATA---TCT-TAA------------TATTATGATCTCTTGTAAATAAA--T---G---CAGGAAATATG---ACGAACTTGA---TTACAAA--T-------TG-----------GCATGC-CTTTAATTAg
gi|21 : gattaATCTCTTGCAAAT---------GATGTGGTGAATCTA---AT-AACTTGA---TTA-AAACTT-------TG-----------GTGTGC-CTTAAATTATACAGAaag
gi|22 : aAA-GGTCTGGAA-----AAC---------TACACT---------------TTG---CAAAAAG-----TCCCA
gi|3 : -TGAACAACA-AAGTACA--T-ATAT---ACAGATCAGCCATTTCACTT----C--CT---------TC----AGCGCCTTCCATGGCCACATTCGC-ATCTTA---TTG-CATCAC-TTTCACTAGAGAGTGACGCC-----------AT---ATGG-GG-G-TCTA-CAACTCTTTTGTGTTTA-AAAATAA-------------------CAAGA--AAAGAA----ATTTATAATCTGATG---TT---TTTGG-ATAAGTGGG--------------------------TT---GATATTA-------------T-TAT------------AAGTCCAATCTCTTTTAAATAAATGT---GATGC----ATTCTGTTCATGAAATTGA---TTACAAA--TAGACACATGTATCAGTACATGTATGT-CCTAAA-TATAAAGA------------AAATAGAAAA--ATACAAAGAACTA-ATCAGAG-AACAAATATTGA----GTCATTACTACAAGACTGGA-GTTTTATATATTGTTT-GTTAGAGTAACTTCAACTGTtcaatct
gi|4 : --AACGGCAGTTATCTTTATCGGC-CATCAAACGACACTTCATT-------GTTTTCCTCAG-CCCAGAGTTCTATTGC---T--GT---------CG-TAGGAAAA-T-CTGCTGAACAAT---GAACTTTTGCTTAGAACTACA---------TC----AACATGTTG-A-----ACCT--ACTACCCCT---TTA-C-CTACCTTTC---------TGTTGCC-----------A----------A-G-TC-A--------TGTGCGTTTGTA---TAAAAAGACAAAAAAACAAAAACAAAA--AAAAAACACCATCTATAATCGGATATGCATGCATTTAC-ACGATTGTGCGGAATAT--------TT-----T--TT---
gi|4 : aTAT--------TT-----T--TTTTGGATACAAGGAAA-TATAAATT-T-T------------GATTT-GGTCTCGTCTAAATA--------GATGCGGCGAATCGG---ACGAACTCGA---TTACAAA--T-------AG-----------G-ATGC-TTTAAATTAtttttaattcatttattatttacttattttttttggatacaaggaaatataaattttgatttggtctcgtctaaatagatgcggcgaatcggacgaactcgattacaaataggatgctttaaatta
gi|5 : aaacggcagttatctttatcggccatcaaacgacacttcattgttttcctcagcccagagttctattgctgtcgtaggaaaatctgctgaacaatgaacttttgcttagaactacatcaacatgttgaacctactacccctttacctacctttctgttgccaagtcatgtgcgtttgtataaaaagacaaaaaaacaaaaacaaaaaaaaaacaccatctataatcggatatgcatgcatttacacgattgtgcggaatatttttttttttaattcatttattatttactTAG----GTAACCAAATATC-AT-AT-TTCAGATTCC-TTAAAGT-TAC----AG-----CATA---ATGAAAA--------AAAGT-------C----GTCTGGAAAACTATACTTAGCACAAAGTC--CC--------ATAAATCTCACAAATCACTCA-------ACTGTGACAAAACT------TC-AACTGTAAA-CATACAACAGTAAACTACGTACC-AAATTTCAGCTTCCAAATCAAAACATGGTAGAAAA
gi|6 : tatctatatgcatACCTCCAGTA-GTC-TAAACATTG-AAGCAGA--------T--AAAGATCAGTATTTTCATTT----C--TG---------TC---TAGCTTCTT--------ACAGTCAC-AACTTTATTCTATC-CCATGTATC---------TGTCTCTTTAGGGTTTATATATGATGCTTA-GATCT-------CTTGTGTGTTAG-A---TAA-------------------TGAGT--ATAAAA----ATTTATTGTTGGA-A---AT---TTTAGGACAAGCAGGTGA-ATAT--------TTATTTTT--TT---AATGCCAGGAAA-TA---------T------------GATTTCAATTTCTTGCAAATAGA--T----ATATGGAAAACCTG---ACAAACTCAA---TCACTAA--T-------TG-----------GTATGT-CCTAAATTATATAGATCTCA-aaagttaaaaaaacaagtgggacaaaagattgataaacagatgcagaagagacaagtacagagttccctccaagtattattgttaggggactacaaccccaaaccacttgaa
gi|7 : ATTGTAGAGAAA-T-TCCGGAA-----AAT---------TATATTCAACTCCAACAACTCTCG---TAAAAATAGC--TCATCTGTGACAAAA------A---CTTG--ATA---TG-----TAAACATACCATTGTAAACAATGCTATGTAAACATATCATTGTAAACAAAATGCCAAA--ATTCAGCTTCC-----TAAATCAAAACAT--GGT-GAA-----------AACAGAAATCA---AAATTCATT-----C----AAC-----CTTTCAA-----TTTTTGTTAAAATGCGTCAACTA-----TAGGGAAAGT--ACGA--C---CTGATCTGTATCAACTGATTT--G-----GTAT----TTAACCAC-----------------ATTCC-TT-A-GT-CAT----GG-----CATA---GTcat
gi|8 : ATGGGATT---AT---TTTTGGATGATCGGGCGG-ATGC--------TT-----TATTT---ACTACCAGAAAAATA---ATA-TATGATTACATGTACAATTTCGATCTCTCCTAAATAAA-------A-GCGGTGGACCGG---ATGGAGTATG---TTACAAA----------TA-----------GTA-------GAATTATATAAATCTCACACTTCTA-----CAAA--CTACTTTGAACTAGAT-AGAGTTACAAGAATTGATTAGGTCA--ACCACGA-----GA-GC---------TGCTT---------AAC-TCAGAGGTAG-TGT--AAGTAGAACTTGCTGTGTATCTACTCTTTTCATGAGCACATGGAC-----AATAAA
gi|9 : ACGATCATCTGCAA---AATGT----TGCCATGATCATCATTTCAAACAACCCTTT-TTCGTATCCGCTGTC------TC--GAGTTC---CATTA-TTCGTTAGGAACAACCTAACCCCAAGC-AT-CT--AGAGACCAGTATTTTTGGTT----C--CGACGCTGGCTTCACTTAGCGTCTTC-A-----AAATTCAC-GACTTT---CTA-C-CAGCGTTTA---------TGTCGTC-----------ACGTGAAGACTATA-TCTATC---TCTTGTGTGTTTG-A---TAA-------------------CAAAG--gatt
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 2222 111 1111111111 33333333333 33333333 555555555555555555555555 22222222 111 333333333 888888888888888888888888888888888888 111 4444444444444 111 4444444444 111111111 1 222222222222222222 66666666666666666666666666 22222222222222222 33333333333333333333333 4444444444444 11 33 2 1 1 1111 11 55555555555555555555555555555 11 11 1 11 1 33333 2222 55555555555555555555555555555555555555555555555555555555 11 11111 111 11111 4444444444444444444 33333333333333333 111 111111 22222222222 111 33333333333333333333 22222 11 22222 333333333333333 33333333333333333333333 1111111 1 222222222222222 111 33333333 11111111111111111111111111111111 3333333333333 44444444 3333333 33333333333 1 1
lowQualScore : 1 0 4444 444 3 3 4 33 3 2 666 88 9999999999 7 0 4 22222222222 1 8 1 88888888 1 8 1 333333333333333333333333 88888888 0 8 1 444 8 8 5 222222222 666666666666666666666666666666666666 8 444 0 4444444444444 222 1 3333333333 1 999999999 1 3 1 1 6 222222222222222222 888 1 99999999999999999999999999 99999999999999999 888 4 1 888 22222222222222222222222 2 5 1 3 0 9999999999999 88 66 6 6 3 3 3333 33 8 55555555555555555555555555555 88 11 3 88 0 3 1 4 33 0 33333 3333 1 99 1 22222222222222222222222222222222222222222222222222222222 44 2 99999 666 77 000 44444 3 1 2222222222222222222 22222222222222222 44 111 888888 77 5 77777777777 000 2 99999999999999999999 7 55555 33 0 0 00000 1 444444444444444 11111111111111111111111 0 0 5 1111111 0 55 1 777777777777777 555 1 1 00000000 11111111111111111111111111111111 5 0 6666666666666 33333333 2 2222222 00000000000 3 6 3 3 6 0
lowQualScore : . . .... ... . . . .. . . ... .. .......... . . . ........... . . . ........ . . . ........................ ........ . . . ... . . . ......... .................................... . ... . ............. ... . .......... . ......... . . . . . .................. ... . .......................... ................. ... . . ... ....................... . . . . . ............. .. .. . . . . .... .. . ............................. .. .. . .. . . . . .. . ..... .... . .. . ........................................................ .. . ..... ... .. ... ..... . . ................... ................. .. ... ...... .. . ........... ... . .................... . ..... .. . . ..... . ............... ....................... . . . ....... . .. . ............... ... . . ........ ................................ . . ............. ........ . ....... ........... . . . . . .
lowQualScore : 0 7 3333 555 5 2 2 55 2 5 999 33 0000000000 3 2 2 99999999999 0 0 0 66666666 0 0 4 444444444444444444444444 88888888 8 0 0 000 0 0 0 000000000 888888888888888888888888888888888888 0 000 8 0000000000000 444 0 8888888888 0 777777777 0 3 0 0 7 555555555555555555 888 4 00000000000000000000000000 11111111111111111 888 5 1 888 11111111111111111111111 2 0 0 2 2 7777777777777 33 77 7 7 3 3 5555 88 8 55555555555555555555555555555 00 88 3 33 7 2 0 2 55 5 33333 5555 2 44 4 77777777777777777777777777777777777777777777777777777777 00 2 33333 333 99 000 33333 6 4 1111111111111111111 33333333333333333 00 777 333333 99 7 11111111111 000 5 22222222222222222222 0 00000 00 2 8 00000 0 444444444444444 77777777777777777777777 1 3 7 6666666 7 99 4 333333333333333 777 0 0 88888888 22222222222222222222222222222222 6 6 8888888888888 22222222 0 5555555 88888888888 3 7 3 7 7 7
consensus : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-AAGCANAA-T-ATACTANA-GATCAGCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGCGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------CAAAG--ATAAAA----------ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA--ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC----T-C--GTTA-----G----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
Reference ( family-3911 ) : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-AAGCANAA-T-ATACTANA-GATCAGCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGCGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------CAAAG--ANAAAA----------ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA--ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC----T-C--GNTA-----G----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
gi|1 : TGTAAACGGCCGTCTGCAATTAAACGA-AGATGTCTTTATAGTCACATAAAACAACTCTTCATTCGTACATGC-ATCCTCAGGTC--GAGTTCTACCACCA-T--GTTCTGAACGATG-AAACATAA-TTATATTATA-GTTCGACATTTTCGCTT----C--TA---------TC---TAGCGTCTTC-A-----ACATTGAC-ATCTTT---CTA-C-CCGCGTTTC---------TGTTGCC-----------ATGCGATGGCGA-G-CCT------TCTTGTATACTTG-A---T-A-------------CAAAGTCGTAAAA----------ATCTATAATAGGATA---AT---TTTTG-ACGAGCGGGCGG-ATAT--------GT-----T--TT---GATACCAGGAAA-TA---ATTATAT------------AGTTTCAATCTCTTGTAAATACA--TGTAGATACGACGAATCTA---ACGAACTTAA---TTACAAA--C-------TG-----------GTATGT-CTTAAATTATAAAGATCTTA-A----TAAA-AAAAAAAGATAC--AGAG-TATAT-AAAG-TACAAGAACTAATTCAGTTA--ACCATGATACT-AA-GCTATACA-ATTGATTGG-TAAAACAA--TCAACTGTAGCTGCTAAAGTGAAAATCAATGTGTATCTATTCATTCAATAAACACTTGTCCCAGGGGGTAGA-----CATTGTAGAGAAA-AGTATGGAA-----AAC---------TGCATT---------------TGG---TATAAAT-----TCCTAAGTGACGAAA----CTAAA-CTTG--ATC---TG-----TAAATATA-------TACTA-------GTAAAT----TAT----------ACGACAAA--TTTCAATTACC-----AAAATTAATGCAT--GTT-AAA-----------AA---CAATCA-CG-----C----AAACA-GGAAACTAAGTCTTACAA-----TGTT-GTCGGAATAGGTCAACCG-----TAACAAAAATG-A--A--C---TGCATCTGTATCTAT----T-C--GATA-----G----GTAATCGCATGTC-AA-A----CATACTCC--TAA-GT-TAA----AG-----CATA---GTGGAGA--------AAGGC-------C------------------------CACAAAATG--TT--------GTAAA--------ACCACTCA-------ACTGTAACGAAACTCAAT-CTTAAACTGTAAG-CATAAAGTAGGAAACTACGTATC-AAATCTCAATGTCAAGAAAAAAATGT-GCGGAGAA
gi|10 : aTAACCACATAAT-AA-AT-T-CAGATTCC-CCAAAGT-TAA----AG-----CATGT--GTGGATAATGTTCAGAAAGCGTTACTCC----GA------------------TACCACGTT--TCTAAACAAAGTAAAA-------ATTGCCTACATTGTAACTGTAACAAAACTGTATACTT-T-CAGTAAAACATACAGTTGTAAATCAC--ACTGAAACTTCAACATCACAATCAAAGCGTGGTGAAAAccaagt
gi|11 : TGATGAAA----TTGAATCTTG--ATC---TG-----TAACCATA-------AACCA-------GTAAAC----CAC----------ATT-CAAATTTTTTAGCTTCC-----AAACTCACAGCAT--GAT-GGA-----------TA---AAGTgatacgaaaatccaggtg
gi|12 : GAAACCAAGTCGTAAAAAATGATTTTGTTCAAAATAAGTCAACTG-----TAAACAAAGTAAA--A--T---TTTATCTTTCTCTGC----T-C--ATTA-----GCGTAGCAACAACATATCAAA-AT-T-CAGATTCCTTTAA-GT-AACTTAAAG-----CATA---GT-GAGA--------AAAGT-------CTGGAA-------------------CACAACATCCATT--------GTAAgtgaaaaatcaactgaggcagactgaccggcagacagctgaagacgaaacctacagtcctcttcaatttcaacagtaaagggactcctaaaactctgaa
gi|13 : aacatGCATTGTGGAATAGTGGTCCAGAA-----G-C---------TATACT---------------CCGATACCCACGT-----TTCTAACAAATAAAATTGCCTACATTGTA--ATC---AG-----TAAACATA-------CTGTT-------GTAAAT----CGC----------ACTTGAAA--CTTCAACATCC-----ACAATCAAAGCGT--GGT-GAA-----------AA---AGAT
gi|14 : gttaaCTTG--ATCAGATGGAGCTTAAACATA-------GAGTA-------GTAAAC----AGC----------ATACCAAA---TTCAGTTTCCTTATTGAAATCAAAGCATGCGGT-GAA-----------CA---AAATacgaaaatccaggtg
gi|15 : taacacaacaccctataagtgccattaatcttcttgaAA-----AAT---------T-TATT---------------TCGG--CACAACG-----TCCCA---------------TAAACCTCGTAAAC---TG-----TAAGGA----------AAC---------TAAAC-----AC----------ATACCAAA--TTTCAGCATTC-----GATATCAAAGCAT--GATAGAA-----------AA---AAAT--TCGGAG--AATTAAAGGC-AGAAataggaaacaa
gi|16 : tttgtTCAGAT-----T---TTTGA-ACGAACGGGCGG-ATATTATATATATT-----T--TT---AATGCCAGG-----------------------------ATTTCGATCTCGTGCAAATGGA--T---GA------------G---AC-AACTCAATGCTTACAAA--T-------TG-----------GAATTCGTTTAAATCAgaatga
gi|17 : ttgCAAGAATTAATATGGTCA--ACCATGAGACT-TACGACTTAAATA--GCT---------CAAATTAAA--GTAG-TGC--AACTAAAACTTGCTGTGTATCTTCTCTTTTGATAATCACACG
gi|18 : TGTTAACAATCATCAGCAAT----CGA-AGATGTCTTTATCATCACGTCAAACAA-GCTTCATTCGTATCgaaaaaatt
gi|19 : tggaatttttattatttcactttttggaatgtttttttaagtaactAACCG-----CAAAACAAGT--G--AGAC---TTGACCGGCGTCCCC----T-C--ATTACCGTAG----GTGACTACACACC-AAGATGT-CAGATTCT-TAAG-GTACAT----GT-----GATA---GTGGGAA--------AAA
gi|2 : TCTAC--ATTCAATAAT---A-GTCT-----GATAAATCTCGTATCGTAGTGGAA-AGTCAAGAACCAACAACAAAGTCTGATAAATC---------------TCA---TAAAAATCGGTTTACT--GTGACAAAA----CTTGATCTTG--ATC---TG-----TAA-C------------TTA-------GTAAAT----CAT----------ATACCAAA--T-----CTTCC-----TAAATCAAATCAC--GGT-AAAGTGTGGAATACAA---AAATCATCGAAGTTCATTAAAATCAGGAAATTAAGTCTTACAA-----TTTTCATGAGAATAAATCAGCCGTACGATAACAAAAGT--A--A--CAAAAACATCTGTATCTAT----T-CTAATTA-----A----GTGACCATGTATC-AA-AT-T--------T-TTAA-GT-C-T----GGATATCTATATTTGCAGGCAC-------AAATT-------C----C-------------------CAT-AAATT--TG--------GTAAAC-------ATCACTTA-------AATGGGATGAAACTTGAT-TTcccgga
gi|20 : --------TT-----T--TT---GACATCAGGAAAATA---TCT-TAA------------TATTATGATCTCTTGTAAATAAA--T---G---CAGGAAATATG---ACGAACTTGA---TTACAAA--T-------TG-----------GCATGC-CTTTAATTAg
gi|21 : gattaATCTCTTGCAAAT---------GATGTGGTGAATCTA---AT-AACTTGA---TTA-AAACTT-------TG-----------GTGTGC-CTTAAATTATACAGAaag
gi|22 : aAA-GGTCTGGAA-----AAC---------TACACT---------------TTG---CAAAAAG-----TCCCA
gi|3 : -TGAACAACA-AAGTACA--T-ATA-TACA-GATCAGCCATTTCACTT----C--CT---------TC----AGCGCCTTCCATGGCCACATTCGC-ATCTTA---TTG-CATCAC-TTTCACTAGAGAGTGACGCC-----------AT---ATGG-GG-G-TCTA-CAACTCTTTTGTGTTTA-AAAATAA-------------CAAGA--AAAGAA----------ATTTATAATCTGATG---TT---TTTGG-ATAAGTGGG--------------------------TT---GATATTA-------------T-TAT------------AAGTCCAATCTCTTTTAAATAAATGT---GATGC----ATTCTGTTCATGAAATTGA---TTACAAA--TAGACACATGTATCAGTACATGTATGT-CCTAAA-TATAAAGA------------AAATAGAAAA--ATACAAAGAACTA-ATCAGAG-AACAAATATTGA----GTCATTACTACAAGACTGGA-GTTTTATATATTGTTT-GTTAGAGTAACTTCAACTGTtcaatct
gi|4 : --AACGGCAGTTATCTTTATCGGC-CATCAAACGACACTTCATT-------GTTTTCCTCAG-CCCAGAGTTCTATTGC---T--GT---------CG-TAGGAAAA-T-CTGCTGAACAAT--GAACTTTTGCTTAGAACTACA---------TC----AACATGTTG-A-----ACCT--ACTACCCCT---TTA-C-CTACCTTTC---------TGTTGCC-----------A----------A-G-TC-A--------TGTGCGTTTGTA---TAAAAAGACAAAAAAACAAAA--ACAAAAAAAAAACACCATCTATAATCGGATATGCATGCATTTAC-ACGATTGTGCGGAATAT--------TT-----T--TT---
gi|4 : aTAT--------TT-----T--TTTTGGATACAAGGAAA-TATAAATT-T-T------------GATTT-GGTCTCGTCTAAATA--------GATGCGGCGAATCGG---ACGAACTCGA---TTACAAA--T-------AG-----------G-ATGC-TTTAAATTAtttttaattcatttattatttacttattttttttggatacaaggaaatataaattttgatttggtctcgtctaaatagatgcggcgaatcggacgaactcgattacaaataggatgctttaaatta
gi|5 : aaacggcagttatctttatcggccatcaaacgacacttcattgttttcctcagcccagagttctattgctgtcgtaggaaaatctgctgaacaatgaacttttgcttagaactacatcaacatgttgaacctactacccctttacctacctttctgttgccaagtcatgtgcgtttgtataaaaagacaaaaaaacaaaaacaaaaaaaaaacaccatctataatcggatatgcatgcatttacacgattgtgcggaatatttttttttttaattcatttattatttactTATCTATA---TGC--ATTA-----G----GTAACCAAATATC-AT-AT-TTCAGATTCC-TTAAAGT-TAC----AG-----CATA---ATGAAAA--------AAAGT-------C----GTCTGGAAAACTATACTTAGCACAAAGTC--CC--------ATAAATCTCACAAATCACTCA-------ACTGTGACAAAACT------TC-AACTGTAAA-CATACAACAGTAAACTACGTACC-AAATTTCAGCTTCCAAATCAAAACATGGTAGAAAA
gi|6 : ACCTCCAGTA-GTC-TAAACATTG-AAGCAGA--------TAAA-GATCAGTATTTTCATTT----C--TG---------TC---TAGCTTCTT--------ACAGTCAC-AACTTTATTCTATC-CCATGTATC---------TGTCTCTTTAGGGTTTATATATGATGCTTA-GATCT-------CTTGTGTGTTAG-A---TAA-------------TGAGT--ATAAAA----------ATTTATTGTTGGA-A---AT---TTTAGGACAAGCAGGTGA-ATAT--------TTATTTTT--TT---AATGCCAGGAAA-TA---------T------------GATTTCAATTTCTTGCAAATAGA--T----ATATGGAAAACCTG---ACAAACTCAA---TCACTAA--T-------TG-----------GTATGT-CCTAAATTATATAGATCTCA-aaagttaaaaaaacaagtgggacaaaagattgataaacagatgcagaagagacaagtacagagttccctccaagtattattgttaggggactacaaccccaaaccacttgaa
gi|7 : ATTGTAGAGAAA-T-TCCGGAA-----AAT---------TATATTCAACTCCAACAACTCTCG---TAAAAATAGC--TCATCTGTGACAAAA------A---CTTG--ATA---TG-----TAAACATACCATTGTAAACAATGCTATGTAAACATATCATTGTAAACAAAATGCCAAA--ATTCAGCTTCC-----TAAATCAAAACAT--GGT-GAA-----------AACAGAAATCA---AAATTCATT-----C----AAC-----CTTTCAA-----TTTTTGTTAAAATGCGTCAACTA-----TAGGGAAAGT--ACGA--C---CTGATCTGTATCAACTGATT-T--GGTA-----T----TTAACCAC-----------------ATTCC-TT-A-GT-CAT----GG-----CATA---GTcat
gi|8 : ATGGGATT---AT---TTTTGGATGATCGGGCGG-ATGC--------TT-----TATTT---ACTACCAGAAAAATA---ATA-TATGATTACATGTACAATTTCGATCTCTCCTAAATAAA-------A-GCGGTGGACCGG---ATGGAGTATG---TTACAAA----------TA-----------GTA-------GAATTATATAAATCTCACACTTCTA-----CAAA--CTACTTTGAACTAGAT-AGAGTTACAAGAATTGATTAGGTCA--ACCACGA-----GA-GC---------TGCTT---------AAC-TCAGAGGTAG-TGT--AAGTAGAACTTGCTGTGTATCTACTCTTTTCATGAGCACATGGAC-----AATAAA
gi|9 : ACGATCATCTGCAA---AATGT----TGCCATGATCATCATTTCAAACAACCCTTT-TTCGTATCCGCTGTC------TC--GAGTTC---CATTA-TTCGTTAGGAACAACCTAACCCCAAGC-AT-CTAGA-GACCAGTATTTTTGGTT----C--CGACGCTGGCTTCACTTAGCGTCTTC-A-----AAATTCAC-GACTTT---CTA-C-CAGCGTTTA---------TGTCGTC-----------ACGTGAAGACTATA-TCTATC---TCTTGTGTGTTTG-A---TAA-------------CAAAG--gatt
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 2222 111 1111111111 33333333333 33333333 555555555555555555555555 22222222 111 333333333 888888888888888888888888888888888888 111 4444444444444 111 4444444444 111111111 1 222222222222222222 66666666666666666666666666 22222222222222222 33333333333333333333333 4444444444444 11 33 2 1 1 1111 11 55555555555555555555555555555 11 11 1 11 1 33333 2222 55555555555555555555555555555555555555555555555555555555 11 11111 111 11111 4444444444444444444 33333333333333333 111 111111 22222222222 111 33333333333333333333 22222 11 22222 333333333333333 11111 2222222222 111111 1 222222222222222 111 33333333 11111111111111111111111111111111 3333333333333 44444444 3333333 33333333333 1 1
lowQualScore : 1 0 4444 444 3 3 4 33 3 2 666 88 9999999999 7 0 4 22222222222 1 8 1 88888888 1 8 1 333333333333333333333333 88888888 0 8 1 444 8 8 5 222222222 666666666666666666666666666666666666 8 444 0 4444444444444 222 1 3333333333 1 999999999 1 3 1 1 6 222222222222222222 888 1 99999999999999999999999999 99999999999999999 888 4 1 888 22222222222222222222222 2 5 1 3 0 9999999999999 88 66 6 6 3 3 3333 33 8 55555555555555555555555555555 88 11 3 88 0 3 1 4 33 0 33333 3333 1 99 1 22222222222222222222222222222222222222222222222222222222 44 2 99999 666 77 000 44444 3 1 2222222222222222222 22222222222222222 44 111 888888 77 5 77777777777 000 2 99999999999999999999 7 55555 33 0 0 00000 1 444444444444444 6 33333 3333333333 2 0 5 333333 0 55 1 777777777777777 555 1 1 00000000 11111111111111111111111111111111 5 0 6666666666666 33333333 2 2222222 00000000000 3 6 3 3 6 0
lowQualScore : . . .... ... . . . .. . . ... .. .......... . . . ........... . . . ........ . . . ........................ ........ . . . ... . . . ......... .................................... . ... . ............. ... . .......... . ......... . . . . . .................. ... . .......................... ................. ... . . ... ....................... . . . . . ............. .. .. . . . . .... .. . ............................. .. .. . .. . . . . .. . ..... .... . .. . ........................................................ .. . ..... ... .. ... ..... . . ................... ................. .. ... ...... .. . ........... ... . .................... . ..... .. . . ..... . ............... . ..... .......... . . . ...... . .. . ............... ... . . ........ ................................ . . ............. ........ . ....... ........... . . . . . .
lowQualScore : 0 7 3333 555 5 2 2 55 2 5 999 33 0000000000 3 2 2 99999999999 0 0 0 66666666 0 0 4 444444444444444444444444 88888888 8 0 0 000 0 0 0 000000000 888888888888888888888888888888888888 0 000 8 0000000000000 444 2 8888888888 0 777777777 0 3 0 0 7 555555555555555555 888 4 00000000000000000000000000 11111111111111111 888 5 1 888 11111111111111111111111 2 0 0 2 2 7777777777777 33 77 7 7 3 3 5555 88 8 55555555555555555555555555555 00 88 3 33 7 2 0 2 55 5 33333 5555 2 44 4 77777777777777777777777777777777777777777777777777777777 00 2 33333 333 99 000 33333 6 4 1111111111111111111 33333333333333333 00 777 333333 99 7 11111111111 000 5 22222222222222222222 0 00000 00 2 8 00000 0 444444444444444 7 33333 5555555555 3 1 7 111111 7 99 4 333333333333333 777 0 0 88888888 22222222222222222222222222222222 6 6 8888888888888 22222222 0 5555555 88888888888 3 7 3 7 7 7
consensus : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-AAGCANAA-T-ATACTANA-GATCAGCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGCGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------CAAAG--ATAAAA----------ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA--ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC-T-C--ATTA-----G----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
Reference ( family-3911 ) : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-AAGCANAA-T-ATACTANA-GATCAGCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGCGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------CAAAG--ATAAAA----------ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA--ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC-T-C--GTTA-----G----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
gi|1 : TGTAAACGGCCGTCTGCAATTAAACGA-AGATGTCTTTATAGTCACATAAAACAACTCTTCATTCGTACATGC-ATCCTCAGGTC--GAGTTCTACCACCA-T--GTTCTGAACGATG-AAACATAA-TTATATTATA-GTTCGACATTTTCGCTT----C--TA---------TC---TAGCGTCTTC-A-----ACATTGAC-ATCTTT---CTA-C-CCGCGTTTC---------TGTTGCC-----------ATGCGATGGCGA-G-CCT------TCTTGTATACTTG-A---T-A-------------CAAAGTCGTAAAA----------ATCTATAATAGGATA---AT---TTTTG-ACGAGCGGGCGG-ATAT--------GT-----T--TT---GATACCAGGAAA-TA---ATTATAT------------AGTTTCAATCTCTTGTAAATACA--TGTAGATACGACGAATCTA---ACGAACTTAA---TTACAAA--C-------TG-----------GTATGT-CTTAAATTATAAAGATCTTA-A----TAAA-AAAAAAAGATAC--AGAG-TATAT-AAAG-TACAAGAACTAATTCAGTTA--ACCATGATACT-AA-GCTATACA-ATTGATTGG-TAAAACAA--TCAACTGTAGCTGCTAAAGTGAAAATCAATGTGTATCTATTCATTCAATAAACACTTGTCCCAGGGGGTAGA-----CATTGTAGAGAAA-AGTATGGAA-----AAC---------TGCATT---------------TGG---TATAAAT-----TCCTAAGTGACGAAA----CTAAA-CTTG--ATC---TG-----TAAATATA-------TACTA-------GTAAAT----TAT----------ACGACAAA--TTTCAATTACC-----AAAATTAATGCAT--GTT-AAA-----------AA---CAATCA-CG-----C----AAACA-GGAAACTAAGTCTTACAA-----TGTT-GTCGGAATAGGTCAACCG-----TAACAAAAATG-A--A--C---TGCATCTGTATCTAT-T-C--GATA-----G----GTAATCGCATGTC-AA-A----CATACTCC--TAA-GT-TAA----AG-----CATA---GTGGAGA--------AAGGC-------C------------------------CACAAAATG--TT--------GTAAA--------ACCACTCA-------ACTGTAACGAAACTCAAT-CTTAAACTGTAAG-CATAAAGTAGGAAACTACGTATC-AAATCTCAATGTCAAGAAAAAAATGT-GCGGAGAA
gi|10 : aTAACCACATAAT-AA-AT-T-CAGATTCC-CCAAAGT-TAA----AG-----CATGT--GTGGATAATGTTCAGAAAGCGTTACTCC----GA------------------TACCACGTT--TCTAAACAAAGTAAAA-------ATTGCCTACATTGTAACTGTAACAAAACTGTATACTT-T-CAGTAAAACATACAGTTGTAAATCAC--ACTGAAACTTCAACATCACAATCAAAGCGTGGTGAAAAccaagt
gi|11 : TGATGAAA----TTGAATCTTG--ATC---TG-----TAACCATA-------AACCA-------GTAAAC----CAC----------ATT-CAAATTTTTTAGCTTCC-----AAACTCACAGCAT--GAT-GGA-----------TA---AAGTgatacgaaaatccaggtg
gi|12 : GAAACCAAGTCGTAAAAAATGATTTTGTTCAAAATAAGTCAACTG-----TAAACAAAGTAAA--A--T---TTTATCTTTCTCTGC-T-C--ATTA-----GCGTAGCAACAACATATCAAA-AT-T-CAGATTCCTTTAA-GT-AACTTAAAG-----CATA---GT-GAGA--------AAAGT-------CTGGAA-------------------CACAACATCCATT--------GTAAgtgaaaaatcaactgaggcagactgaccggcagacagctgaagacgaaacctacagtcctcttcaatttcaacagtaaagggactcctaaaactctgaa
gi|13 : aacatGCATTGTGGAATAGTGGTCCAGAA-----G-C---------TATACT---------------CCGATACCCACGT-----TTCTAACAAATAAAATTGCCTACATTGTA--ATC---AG-----TAAACATA-------CTGTT-------GTAAAT----CGC----------ACTTGAAA--CTTCAACATCC-----ACAATCAAAGCGT--GGT-GAA-----------AA---AGAT
gi|14 : gttaaCTTG--ATCAGATGGAGCTTAAACATA-------GAGTA-------GTAAAC----AGC----------ATACCAAA---TTCAGTTTCCTTATTGAAATCAAAGCATGCGGT-GAA-----------CA---AAATacgaaaatccaggtg
gi|15 : taacacaacaccctataagtgccattaatcttcttgaAA-----AAT---------T-TATT---------------TCGG--CACAACG-----TCCCA---------------TAAACCTCGTAAAC---TG-----TAAGGA----------AAC---------TAAAC-----AC----------ATACCAAA--TTTCAGCATTC-----GATATCAAAGCAT--GATAGAA-----------AA---AAAT--TCGGAG--AATTAAAGGC-AGAAataggaaacaa
gi|16 : tttgtTCAGAT-----T---TTTGA-ACGAACGGGCGG-ATATTATATATATT-----T--TT---AATGCCAGG-----------------------------ATTTCGATCTCGTGCAAATGGA--T---GA------------G---AC-AACTCAATGCTTACAAA--T-------TG-----------GAATTCGTTTAAATCAgaatga
gi|17 : ttgCAAGAATTAATATGGTCA--ACCATGAGACT-TACGACTTAAATA--GCT---------CAAATTAAA--GTAG-TGC--AACTAAAACTTGCTGTGTATCTTCTCTTTTGATAATCACACG
gi|18 : TGTTAACAATCATCAGCAAT----CGA-AGATGTCTTTATCATCACGTCAAACAA-GCTTCATTCGTATCgaaaaaatt
gi|19 : tggaatttttattatttcactttttggaatgtttttttaagtaactAACCG-----CAAAACAAGT--G--AGAC---TTGACCGGCGTCCCC-T-C--ATTACCGTAG----GTGACTACACACC-AAGATGT-CAGATTCT-TAAG-GTACAT----GT-----GATA---GTGGGAA--------AAA
gi|2 : TCTAC--ATTCAATAAT---A-GTCT-----GATAAATCTCGTATCGTAGTGGAA-AGTCAAGAACCAACAACAAAGTCTGATAAATC---------------TCA---TAAAAATCGGTTTACT--GTGACAAAA----CTTGATCTTG--ATC---TG-----TAA-C------------TTA-------GTAAAT----CAT----------ATACCAAA--T-----CTTCC-----TAAATCAAATCAC--GGT-AAAGTGTGGAATACAA---AAATCATCGAAGTTCATTAAAATCAGGAAATTAAGTCTTACAA-----TTTTCATGAGAATAAATCAGCCGTACGATAACAAAAGT--A--A--CAAAAACATCTGTATCTAT-T-CTAATTA-----A----GTGACCATGTATC-AA-AT-T--------T-TTAA-GT-C-T----GGATATCTATATTTGCAGGCAC-------AAATT-------C----C-------------------CAT-AAATT--TG--------GTAAAC-------ATCACTTA-------AATGGGATGAAACTTGAT-TTcccgga
gi|20 : --------TT-----T--TT---GACATCAGGAAAATA---TCT-TAA------------TATTATGATCTCTTGTAAATAAA--T---G---CAGGAAATATG---ACGAACTTGA---TTACAAA--T-------TG-----------GCATGC-CTTTAATTAg
gi|21 : gattaATCTCTTGCAAAT---------GATGTGGTGAATCTA---AT-AACTTGA---TTA-AAACTT-------TG-----------GTGTGC-CTTAAATTATACAGAaag
gi|22 : aAA-GGTCTGGAA-----AAC---------TACACT---------------TTG---CAAAAAG-----TCCCA
gi|3 : -TGAACAACA-AAGTACA--T-ATA-TACA-GATCAGCCATTTCACTT----C--CT---------TC----AGCGCCTTCCATGGCCACATTCGC-ATCTTA---TTG-CATCAC-TTTCACTAGAGAGTGACGCC-----------AT---ATGG-GG-G-TCTA-CAACTCTTTTGTGTTTA-AAAATAA-------------CAAGA--AAAGAA----------ATTTATAATCTGATG---TT---TTTGG-ATAAGTGGG--------------------------TT---GATATTA-------------T-TAT------------AAGTCCAATCTCTTTTAAATAAATGT---GATGC----ATTCTGTTCATGAAATTGA---TTACAAA--TAGACACATGTATCAGTACATGTATGT-CCTAAA-TATAAAGA------------AAATAGAAAA--ATACAAAGAACTA-ATCAGAG-AACAAATATTGA----GTCATTACTACAAGACTGGA-GTTTTATATATTGTTT-GTTAGAGTAACTTCAACTGTtcaatct
gi|4 : --AACGGCAGTTATCTTTATCGGC-CATCAAACGACACTTCATT-------GTTTTCCTCAG-CCCAGAGTTCTATTGC---T--GT---------CG-TAGGAAAA-T-CTGCTGAACAAT--GAACTTTTGCTTAGAACTACA---------TC----AACATGTTG-A-----ACCT--ACTACCCCT---TTA-C-CTACCTTTC---------TGTTGCC-----------A----------A-G-TC-A--------TGTGCGTTTGTA---TAAAAAGACAAAAAAACAAAA--ACAAAAAAAAAACACCATCTATAATCGGATATGCATGCATTTAC-ACGATTGTGCGGAATAT--------TT-----T--TT---
gi|4 : aTAT--------TT-----T--TTTTGGATACAAGGAAA-TATAAATT-T-T------------GATTT-GGTCTCGTCTAAATA--------GATGCGGCGAATCGG---ACGAACTCGA---TTACAAA--T-------AG-----------G-ATGC-TTTAAATTAtttttaattcatttattatttacttattttttttggatacaaggaaatataaattttgatttggtctcgtctaaatagatgcggcgaatcggacgaactcgattacaaataggatgctttaaatta
gi|5 : aaacggcagttatctttatcggccatcaaacgacacttcattgttttcctcagcccagagttctattgctgtcgtaggaaaatctgctgaacaatgaacttttgcttagaactacatcaacatgttgaacctactacccctttacctacctttctgttgccaagtcatgtgcgtttgtataaaaagacaaaaaaacaaaaacaaaaaaaaaacaccatctataatcggatatgcatgcatttacacgattgtgcggaatatttttttttttaattcatttattatttactTATCTATATGC--ATTA-----G----GTAACCAAATATC-AT-AT-TTCAGATTCC-TTAAAGT-TAC----AG-----CATA---ATGAAAA--------AAAGT-------C----GTCTGGAAAACTATACTTAGCACAAAGTC--CC--------ATAAATCTCACAAATCACTCA-------ACTGTGACAAAACT------TC-AACTGTAAA-CATACAACAGTAAACTACGTACC-AAATTTCAGCTTCCAAATCAAAACATGGTAGAAAA
gi|6 : ACCTCCAGTA-GTC-TAAACATTG-AAGCAGA--------TAAA-GATCAGTATTTTCATTT----C--TG---------TC---TAGCTTCTT--------ACAGTCAC-AACTTTATTCTATC-CCATGTATC---------TGTCTCTTTAGGGTTTATATATGATGCTTA-GATCT-------CTTGTGTGTTAG-A---TAA-------------TGAGT--ATAAAA----------ATTTATTGTTGGA-A---AT---TTTAGGACAAGCAGGTGA-ATAT--------TTATTTTT--TT---AATGCCAGGAAA-TA---------T------------GATTTCAATTTCTTGCAAATAGA--T----ATATGGAAAACCTG---ACAAACTCAA---TCACTAA--T-------TG-----------GTATGT-CCTAAATTATATAGATCTCA-aaagttaaaaaaacaagtgggacaaaagattgataaacagatgcagaagagacaagtacagagttccctccaagtattattgttaggggactacaaccccaaaccacttgaa
gi|7 : ATTGTAGAGAAA-T-TCCGGAA-----AAT---------TATATTCAACTCCAACAACTCTCG---TAAAAATAGC--TCATCTGTGACAAAA------A---CTTG--ATA---TG-----TAAACATACCATTGTAAACAATGCTATGTAAACATATCATTGTAAACAAAATGCCAAA--ATTCAGCTTCC-----TAAATCAAAACAT--GGT-GAA-----------AACAGAAATCA---AAATTCATT-----C----AAC-----CTTTCAA-----TTTTTGTTAAAATGCGTCAACTA-----TAGGGAAAGT--ACGA--C---CTGATCTGTATCAAC-T-G--ATTT-----G----GT------AT-TT-AA----C-CACATTCC-TT-A-GT-CAT----GG-----CATA---GTcat
gi|8 : ATGGGATT---AT---TTTTGGATGATCGGGCGG-ATGC--------TT-----TATTT---ACTACCAGAAAAATA---ATA-TATGATTACATGTACAATTTCGATCTCTCCTAAATAAA-------A-GCGGTGGACCGG---ATGGAGTATG---TTACAAA----------TA-----------GTA-------GAATTATATAAATCTCACACTTCTA-----CAAA--CTACTTTGAACTAGAT-AGAGTTACAAGAATTGATTAGGTCA--ACCACGA-----GA-GC---------TGCTT---------AAC-TCAGAGGTAG-TGT--AAGTAGAACTTGCTGTGTATCTACTCTTTTCATGAGCACATGGAC-----AATAAA
gi|9 : ACGATCATCTGCAA---AATGT----TGCCATGATCATCATTTCAAACAACCCTTT-TTCGTATCCGCTGTC------TC--GAGTTC---CATTA-TTCGTTAGGAACAACCTAACCCCAAGC-AT-CTAGA-GACCAGTATTTTTGGTT----C--CGACGCTGGCTTCACTTAGCGTCTTC-A-----AAATTCAC-GACTTT---CTA-C-CAGCGTTTA---------TGTCGTC-----------ACGTGAAGACTATA-TCTATC---TCTTGTGTGTTTG-A---TAA-------------CAAAG--gatt
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 2222 111 1111111111 33333333333 33333333 555555555555555555555555 22222222 111 333333333 888888888888888888888888888888888888 111 4444444444444 111 4444444444 111111111 1 222222222222222222 66666666666666666666666666 22222222222222222 33333333333333333333333 4444444444444 11 33 2 1 1 1111 11 55555555555555555555555555555 11 11 1 11 1 33333 2222 55555555555555555555555555555555555555555555555555555555 11 11111 111 11111 4444444444444444444 33333333333333333 111 111111 22222222222 111 33333333333333333333 22222 11 22222 333333333333333 1111 11111 1111 111111 1 222222222222222 111 33333333 11111111111111111111111111111111 3333333333333 44444444 3333333 33333333333 1 1
lowQualScore : 1 0 4444 444 3 3 4 33 3 2 666 88 9999999999 7 0 4 22222222222 1 8 1 88888888 1 8 1 333333333333333333333333 88888888 0 8 1 444 8 8 5 222222222 666666666666666666666666666666666666 8 444 0 4444444444444 222 1 3333333333 1 999999999 1 3 1 1 6 222222222222222222 888 1 99999999999999999999999999 99999999999999999 888 4 1 888 22222222222222222222222 2 5 1 3 0 9999999999999 88 66 6 6 3 3 3333 33 8 55555555555555555555555555555 88 11 3 88 0 3 1 4 33 0 33333 3333 1 99 1 22222222222222222222222222222222222222222222222222222222 44 2 99999 666 77 000 44444 3 1 2222222222222222222 22222222222222222 44 111 888888 77 5 77777777777 000 2 99999999999999999999 7 55555 33 0 0 00000 1 444444444444444 6 0000 66666 4444 2 0 5 333333 0 55 1 777777777777777 555 1 1 00000000 11111111111111111111111111111111 5 0 6666666666666 33333333 2 2222222 00000000000 3 6 3 3 6 0
lowQualScore : . . .... ... . . . .. . . ... .. .......... . . . ........... . . . ........ . . . ........................ ........ . . . ... . . . ......... .................................... . ... . ............. ... . .......... . ......... . . . . . .................. ... . .......................... ................. ... . . ... ....................... . . . . . ............. .. .. . . . . .... .. . ............................. .. .. . .. . . . . .. . ..... .... . .. . ........................................................ .. . ..... ... .. ... ..... . . ................... ................. .. ... ...... .. . ........... ... . .................... . ..... .. . . ..... . ............... . .... ..... .... . . . ...... . .. . ............... ... . . ........ ................................ . . ............. ........ . ....... ........... . . . . . .
lowQualScore : 0 7 3333 555 5 2 2 55 2 5 999 33 0000000000 3 2 2 99999999999 0 0 0 66666666 0 0 4 444444444444444444444444 88888888 8 0 0 000 0 0 0 000000000 888888888888888888888888888888888888 0 000 8 0000000000000 444 2 8888888888 0 777777777 0 3 0 0 7 555555555555555555 888 4 00000000000000000000000000 11111111111111111 888 5 1 888 11111111111111111111111 2 0 0 2 2 7777777777777 33 77 7 7 3 3 5555 88 8 55555555555555555555555555555 00 88 3 33 7 2 0 2 55 5 33333 5555 2 44 4 77777777777777777777777777777777777777777777777777777777 00 2 33333 333 99 000 33333 6 4 1111111111111111111 33333333333333333 00 777 333333 99 7 11111111111 000 5 22222222222222222222 0 00000 00 2 8 00000 0 444444444444444 7 0000 77777 2222 3 1 7 111111 7 99 4 333333333333333 777 0 0 88888888 22222222222222222222222222222222 6 6 8888888888888 22222222 0 5555555 88888888888 3 7 3 7 7 7
consensus : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-AAGCANAA-T-ATACTANA-GATCAGCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGCGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------CAAAG--ATAAAA----------ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA--ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC-T-C--AT-----TAG----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
Reference ( family-3911 ) : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-AAGCANAA-T-ATACTANA-GATCAGCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGCGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------CAAAG--ATAAAA----------ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA--ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC-T-C--AT-----TAG----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
gi|1 : TGTAAACGGCCGTCTGCAATTAAACGA-AGATGTCTTTATAGTCACATAAAACAACTCTTCATTCGTACATGC-ATCCTCAGGTC--GAGTTCTACCACCA-T--GTTCTGAACGATG-AAACATAA-TTATATTATA-GTTCGACATTTTCGCTT----C--TA---------TC---TAGCGTCTTC-A-----ACATTGAC-ATCTTT---CTA-C-CCGCGTTTC---------TGTTGCC-----------ATGCGATGGCGA-G-CCT------TCTTGTATACTTG-A---T-A-------------CAAAGTCGTAAAA----------ATCTATAATAGGATA---AT---TTTTG-ACGAGCGGGCGG-ATAT--------GT-----T--TT---GATACCAGGAAA-TA---ATTATAT------------AGTTTCAATCTCTTGTAAATACA--TGTAGATACGACGAATCTA---ACGAACTTAA---TTACAAA--C-------TG-----------GTATGT-CTTAAATTATAAAGATCTTA-A----TAAA-AAAAAAAGATAC--AGAG-TATAT-AAAG-TACAAGAACTAATTCAGTTA--ACCATGATACT-AA-GCTATACA-ATTGATTGG-TAAAACAA--TCAACTGTAGCTGCTAAAGTGAAAATCAATGTGTATCTATTCATTCAATAAACACTTGTCCCAGGGGGTAGA-----CATTGTAGAGAAA-AGTATGGAA-----AAC---------TGCATT---------------TGG---TATAAAT-----TCCTAAGTGACGAAA----CTAAA-CTTG--ATC---TG-----TAAATATA-------TACTA-------GTAAAT----TAT----------ACGACAAA--TTTCAATTACC-----AAAATTAATGCAT--GTT-AAA-----------AA---CAATCA-CG-----C----AAACA-GGAAACTAAGTCTTACAA-----TGTT-GTCGGAATAGGTCAACCG-----TAACAAAAATG-A--A--C---TGCATCTGTATCTAT-T-C--GA-----TAG----GTAATCGCATGTC-AA-A----CATACTCC--TAA-GT-TAA----AG-----CATA---GTGGAGA--------AAGGC-------C------------------------CACAAAATG--TT--------GTAAA--------ACCACTCA-------ACTGTAACGAAACTCAAT-CTTAAACTGTAAG-CATAAAGTAGGAAACTACGTATC-AAATCTCAATGTCAAGAAAAAAATGT-GCGGAGAA
gi|10 : aTAACCACATAAT-AA-AT-T-CAGATTCC-CCAAAGT-TAA----AG-----CATGT--GTGGATAATGTTCAGAAAGCGTTACTCC----GA------------------TACCACGTT--TCTAAACAAAGTAAAA-------ATTGCCTACATTGTAACTGTAACAAAACTGTATACTT-T-CAGTAAAACATACAGTTGTAAATCAC--ACTGAAACTTCAACATCACAATCAAAGCGTGGTGAAAAccaagt
gi|11 : TGATGAAA----TTGAATCTTG--ATC---TG-----TAACCATA-------AACCA-------GTAAAC----CAC----------ATT-CAAATTTTTTAGCTTCC-----AAACTCACAGCAT--GAT-GGA-----------TA---AAGTgatacgaaaatccaggtg
gi|12 : GAAACCAAGTCGTAAAAAATGATTTTGTTCAAAATAAGTCAACTG-----TAAACAAAGTAAA--A--T---TTTATCTTTCTCTGC-T-C--AT-----TAGCGTAGCAACAACATATCAAA-AT-T-CAGATTCCTTTAA-GT-AACTTAAAG-----CATA---GT-GAGA--------AAAGT-------CTGGAA-------------------CACAACATCCATT--------GTAAgtgaaaaatcaactgaggcagactgaccggcagacagctgaagacgaaacctacagtcctcttcaatttcaacagtaaagggactcctaaaactctgaa
gi|13 : aacatGCATTGTGGAATAGTGGTCCAGAA-----G-C---------TATACT---------------CCGATACCCACGT-----TTCTAACAAATAAAATTGCCTACATTGTA--ATC---AG-----TAAACATA-------CTGTT-------GTAAAT----CGC----------ACTTGAAA--CTTCAACATCC-----ACAATCAAAGCGT--GGT-GAA-----------AA---AGAT
gi|14 : gttaaCTTG--ATCAGATGGAGCTTAAACATA-------GAGTA-------GTAAAC----AGC----------ATACCAAA---TTCAGTTTCCTTATTGAAATCAAAGCATGCGGT-GAA-----------CA---AAATacgaaaatccaggtg
gi|15 : taacacaacaccctataagtgccattaatcttcttgaAA-----AAT---------T-TATT---------------TCGG--CACAACG-----TCCCA---------------TAAACCTCGTAAAC---TG-----TAAGGA----------AAC---------TAAAC-----AC----------ATACCAAA--TTTCAGCATTC-----GATATCAAAGCAT--GATAGAA-----------AA---AAAT--TCGGAG--AATTAAAGGC-AGAAataggaaacaa
gi|16 : tttgtTCAGAT-----T---TTTGA-ACGAACGGGCGG-ATATTATATATATT-----T--TT---AATGCCAGG-----------------------------ATTTCGATCTCGTGCAAATGGA--T---GA------------G---AC-AACTCAATGCTTACAAA--T-------TG-----------GAATTCGTTTAAATCAgaatga
gi|17 : ttgCAAGAATTAATATGGTCA--ACCATGAGACT-TACGACTTAAATA--GCT---------CAAATTAAA--GTAG-TGC--AACTAAAACTTGCTGTGTATCTTCTCTTTTGATAATCACACG
gi|18 : TGTTAACAATCATCAGCAAT----CGA-AGATGTCTTTATCATCACGTCAAACAA-GCTTCATTCGTATCgaaaaaatt
gi|19 : tggaatttttattatttcactttttggaatgtttttttaagtaactAACCG-----CAAAACAAGT--G--AGAC---TTGACCGGCGTCCCC-T-C--ATTACCGTAG----GTGACTACACACC-AAGATGT-CAGATTCT-TAAG-GTACAT----GT-----GATA---GTGGGAA--------AAA
gi|2 : TCTAC--ATTCAATAAT---A-GTCT-----GATAAATCTCGTATCGTAGTGGAA-AGTCAAGAACCAACAACAAAGTCTGATAAATC---------------TCA---TAAAAATCGGTTTACT--GTGACAAAA----CTTGATCTTG--ATC---TG-----TAA-C------------TTA-------GTAAAT----CAT----------ATACCAAA--T-----CTTCC-----TAAATCAAATCAC--GGT-AAAGTGTGGAATACAA---AAATCATCGAAGTTCATTAAAATCAGGAAATTAAGTCTTACAA-----TTTTCATGAGAATAAATCAGCCGTACGATAACAAAAGT--A--A--CAAAAACATCTGTATCTAT-T-CTAAT-----TAA----GTGACCATGTATC-AA-AT-T--------T-TTAA-GT-C-T----GGATATCTATATTTGCAGGCAC-------AAATT-------C----C-------------------CAT-AAATT--TG--------GTAAAC-------ATCACTTA-------AATGGGATGAAACTTGAT-TTcccgga
gi|20 : --------TT-----T--TT---GACATCAGGAAAATA---TCT-TAA------------TATTATGATCTCTTGTAAATAAA--T---G---CAGGAAATATG---ACGAACTTGA---TTACAAA--T-------TG-----------GCATGC-CTTTAATTAg
gi|21 : gattaATCTCTTGCAAAT---------GATGTGGTGAATCTA---AT-AACTTGA---TTA-AAACTT-------TG-----------GTGTGC-CTTAAATTATACAGAaag
gi|22 : aAA-GGTCTGGAA-----AAC---------TACACT---------------TTG---CAAAAAG-----TCCCA
gi|3 : -TGAACAACA-AAGTACA--T-ATA-TACA-GATCAGCCATTTCACTT----C--CT---------TC----AGCGCCTTCCATGGCCACATTCGC-ATCTTA---TTG-CATCAC-TTTCACTAGAGAGTGACGCC-----------AT---ATGG-GG-G-TCTA-CAACTCTTTTGTGTTTA-AAAATAA-------------CAAGA--AAAGAA----------ATTTATAATCTGATG---TT---TTTGG-ATAAGTGGG--------------------------TT---GATATTA-------------T-TAT------------AAGTCCAATCTCTTTTAAATAAATGT---GATGC----ATTCTGTTCATGAAATTGA---TTACAAA--TAGACACATGTATCAGTACATGTATGT-CCTAAA-TATAAAGA------------AAATAGAAAA--ATACAAAGAACTA-ATCAGAG-AACAAATATTGA----GTCATTACTACAAGACTGGA-GTTTTATATATTGTTT-GTTAGAGTAACTTCAACTGTtcaatct
gi|4 : --AACGGCAGTTATCTTTATCGGC-CATCAAACGACACTTCATT-------GTTTTCCTCAG-CCCAGAGTTCTATTGC---T--GT---------CG-TAGGAAAA-T-CTGCTGAACAAT--GAACTTTTGCTTAGAACTACA---------TC----AACATGTTG-A-----ACCT--ACTACCCCT---TTA-C-CTACCTTTC---------TGTTGCC-----------A----------A-G-TC-A--------TGTGCGTTTGTA---TAAAAAGACAAAAAAACAAAA--ACAAAAAAAAAACACCATCTATAATCGGATATGCATGCATTTAC-ACGATTGTGCGGAATAT--------TT-----T--TT---
gi|4 : aTAT--------TT-----T--TTTTGGATACAAGGAAA-TATAAATT-T-T------------GATTT-GGTCTCGTCTAAATA--------GATGCGGCGAATCGG---ACGAACTCGA---TTACAAA--T-------AG-----------G-ATGC-TTTAAATTAtttttaattcatttattatttacttattttttttggatacaaggaaatataaattttgatttggtctcgtctaaatagatgcggcgaatcggacgaactcgattacaaataggatgctttaaatta
gi|5 : aaacggcagttatctttatcggccatcaaacgacacttcattgttttcctcagcccagagttctattgctgtcgtaggaaaatctgctgaacaatgaacttttgcttagaactacatcaacatgttgaacctactacccctttacctacctttctgttgccaagtcatgtgcgtttgtataaaaagacaaaaaaacaaaaacaaaaaaaaaacaccatctataatcggatatgcatgcatttacacgattgtgcggaatatttttttttttaattcatttattatttactTATCTATATGC--AT-----TAG----GTAACCAAATATC-AT-AT-TTCAGATTCC-TTAAAGT-TAC----AG-----CATA---ATGAAAA--------AAAGT-------C----GTCTGGAAAACTATACTTAGCACAAAGTC--CC--------ATAAATCTCACAAATCACTCA-------ACTGTGACAAAACT------TC-AACTGTAAA-CATACAACAGTAAACTACGTACC-AAATTTCAGCTTCCAAATCAAAACATGGTAGAAAA
gi|6 : ACCTCCAGTA-GTC-TAAACATTG-AAGCAGA--------TAAA-GATCAGTATTTTCATTT----C--TG---------TC---TAGCTTCTT--------ACAGTCAC-AACTTTATTCTATC-CCATGTATC---------TGTCTCTTTAGGGTTTATATATGATGCTTA-GATCT-------CTTGTGTGTTAG-A---TAA-------------TGAGT--ATAAAA----------ATTTATTGTTGGA-A---AT---TTTAGGACAAGCAGGTGA-ATAT--------TTATTTTT--TT---AATGCCAGGAAA-TA---------T------------GATTTCAATTTCTTGCAAATAGA--T----ATATGGAAAACCTG---ACAAACTCAA---TCACTAA--T-------TG-----------GTATGT-CCTAAATTATATAGATCTCA-aaagttaaaaaaacaagtgggacaaaagattgataaacagatgcagaagagacaagtacagagttccctccaagtattattgttaggggactacaaccccaaaccacttgaa
gi|7 : ATTGTAGAGAAA-T-TCCGGAA-----AAT---------TATATTCAACTCCAACAACTCTCG---TAAAAATAGC--TCATCTGTGACAAAA------A---CTTG--ATA---TG-----TAAACATACCATTGTAAACAATGCTATGTAAACATATCATTGTAAACAAAATGCCAAA--ATTCAGCTTCC-----TAAATCAAAACAT--GGT-GAA-----------AACAGAAATCA---AAATTCATT-----C----AAC-----CTTTCAA-----TTTTTGTTAAAATGCGTCAACTA-----TAGGGAAAGT--ACGA--C---CTGATCTGTATCAAC-T-G--AT-----TTG----GT------AT-TT-AA----C-CACATTCC-TT-A-GT-CAT----GG-----CATA---GTcat
gi|8 : ATGGGATT---AT---TTTTGGATGATCGGGCGG-ATGC--------TT-----TATTT---ACTACCAGAAAAATA---ATA-TATGATTACATGTACAATTTCGATCTCTCCTAAATAAA-------A-GCGGTGGACCGG---ATGGAGTATG---TTACAAA----------TA-----------GTA-------GAATTATATAAATCTCACACTTCTA-----CAAA--CTACTTTGAACTAGAT-AGAGTTACAAGAATTGATTAGGTCA--ACCACGA-----GA-GC---------TGCTT---------AAC-TCAGAGGTAG-TGT--AAGTAGAACTTGCTGTGTATCTACTCTTTTCATGAGCACATGGAC-----AATAAA
gi|9 : ACGATCATCTGCAA---AATGT----TGCCATGATCATCATTTCAAACAACCCTTT-TTCGTATCCGCTGTC------TC--GAGTTC---CATTA-TTCGTTAGGAACAACCTAACCCCAAGC-AT-CTAGA-GACCAGTATTTTTGGTT----C--CGACGCTGGCTTCACTTAGCGTCTTC-A-----AAATTCAC-GACTTT---CTA-C-CAGCGTTTA---------TGTCGTC-----------ACGTGAAGACTATA-TCTATC---TCTTGTGTGTTTG-A---TAA-------------CAAAG--gatt
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 2222 111 1111111111 33333333333 33333333 555555555555555555555555 22222222 111 333333333 888888888888888888888888888888888888 111 4444444444444 111 4444444444 111111111 1 222222222222222222 66666666666666666666666666 22222222222222222 33333333333333333333333 4444444444444 11 33 2 1 1 1111 11 55555555555555555555555555555 11 11 1 11 1 33333 2222 55555555555555555555555555555555555555555555555555555555 11 11111 111 11111 4444444444444444444 33333333333333333 111 111111 22222222222 111 33333333333333333333 22222 11 22222 333333333333333 1111 11111 1111 111111 1 222222222222222 111 33333333 11111111111111111111111111111111 3333333333333 44444444 3333333 33333333333 1 1
lowQualScore : 1 0 4444 444 3 3 4 33 3 2 666 88 9999999999 7 0 4 22222222222 1 8 1 88888888 1 8 1 333333333333333333333333 88888888 0 8 1 444 8 8 5 222222222 666666666666666666666666666666666666 8 444 0 4444444444444 222 1 3333333333 1 999999999 1 3 1 1 6 222222222222222222 888 1 99999999999999999999999999 99999999999999999 888 4 1 888 22222222222222222222222 2 5 1 3 0 9999999999999 88 66 6 6 3 3 3333 33 8 55555555555555555555555555555 88 11 3 88 0 3 1 4 33 0 33333 3333 1 99 1 22222222222222222222222222222222222222222222222222222222 44 2 99999 666 77 000 44444 3 1 2222222222222222222 22222222222222222 44 111 888888 77 5 77777777777 000 2 99999999999999999999 7 55555 33 0 0 00000 1 444444444444444 6 0000 66666 4444 2 0 5 333333 0 55 1 777777777777777 555 1 1 00000000 11111111111111111111111111111111 5 0 6666666666666 33333333 2 2222222 00000000000 3 6 3 3 6 0
lowQualScore : . . .... ... . . . .. . . ... .. .......... . . . ........... . . . ........ . . . ........................ ........ . . . ... . . . ......... .................................... . ... . ............. ... . .......... . ......... . . . . . .................. ... . .......................... ................. ... . . ... ....................... . . . . . ............. .. .. . . . . .... .. . ............................. .. .. . .. . . . . .. . ..... .... . .. . ........................................................ .. . ..... ... .. ... ..... . . ................... ................. .. ... ...... .. . ........... ... . .................... . ..... .. . . ..... . ............... . .... ..... .... . . . ...... . .. . ............... ... . . ........ ................................ . . ............. ........ . ....... ........... . . . . . .
lowQualScore : 0 7 3333 555 5 2 2 55 2 5 999 33 0000000000 3 2 2 99999999999 0 0 0 66666666 0 0 4 444444444444444444444444 88888888 8 0 0 000 0 0 0 000000000 888888888888888888888888888888888888 0 000 8 0000000000000 444 2 8888888888 0 777777777 0 3 0 0 7 555555555555555555 888 4 00000000000000000000000000 11111111111111111 888 5 1 888 11111111111111111111111 2 0 0 2 2 7777777777777 33 77 7 7 3 3 5555 88 8 55555555555555555555555555555 00 88 3 33 7 2 0 2 55 5 33333 5555 2 44 4 77777777777777777777777777777777777777777777777777777777 00 2 33333 333 99 000 33333 6 4 1111111111111111111 33333333333333333 00 777 333333 99 7 11111111111 000 5 22222222222222222222 0 00000 00 2 8 00000 0 444444444444444 7 0000 77777 2222 3 1 7 111111 7 99 4 333333333333333 777 0 0 88888888 22222222222222222222222222222222 6 6 8888888888888 22222222 0 5555555 88888888888 3 7 3 7 7 7
consensus : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-AAGCANAA-T-ATACTANA-GATCAGCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGCGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------CAAAG--ATAAAA----------ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA--ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC-T-C--AT-----TAG----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
Reference ( family-3911 ) : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-AAGCANAA-T-ATACTANA-GATCAGCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGCGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------CAAAG--ATAAAA----------ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA--ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC-T-C--AT-----TAG----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
gi|1 : TGTAAACGGCCGTCTGCAATTAAACGA-AGATGTCTTTATAGTCACATAAAACAACTCTTCATTCGTACATGC-ATCCTCAGGTC--GAGTTCTACCACCA-T--GTTCTGAACGATG-AAACATAA-TTATATTATA-GTTCGACATTTTCGCTT----C--TA---------TC---TAGCGTCTTC-A-----ACATTGAC-ATCTTT---CTA-C-CCGCGTTTC---------TGTTGCC-----------ATGCGATGGCGA-G-CCT------TCTTGTATACTTG-A---T-A-------------CAAAGTCGTAAAA----------ATCTATAATAGGATA---AT---TTTTG-ACGAGCGGGCGG-ATAT--------GT-----T--TT---GATACCAGGAAA-TA---ATTATAT------------AGTTTCAATCTCTTGTAAATACA--TGTAGATACGACGAATCTA---ACGAACTTAA---TTACAAA--C-------TG-----------GTATGT-CTTAAATTATAAAGATCTTA-A----TAAA-AAAAAAAGATAC--AGAG-TATAT-AAAG-TACAAGAACTAATTCAGTTA--ACCATGATACT-AA-GCTATACA-ATTGATTGG-TAAAACAA--TCAACTGTAGCTGCTAAAGTGAAAATCAATGTGTATCTATTCATTCAATAAACACTTGTCCCAGGGGGTAGA-----CATTGTAGAGAAA-AGTATGGAA-----AAC---------TGCATT---------------TGG---TATAAAT-----TCCTAAGTGACGAAA----CTAAA-CTTG--ATC---TG-----TAAATATA-------TACTA-------GTAAAT----TAT----------ACGACAAA--TTTCAATTACC-----AAAATTAATGCAT--GTT-AAA-----------AA---CAATCA-CG-----C----AAACA-GGAAACTAAGTCTTACAA-----TGTT-GTCGGAATAGGTCAACCG-----TAACAAAAATG-A--A--C---TGCATCTGTATCTAT-T-C--GA-----TAG----GTAATCGCATGTC-AA-A----CATACTCC--TAA-GT-TAA----AG-----CATA---GTGGAGA--------AAGGC-------C------------------------CACAAAATG--TT--------GTAAA--------ACCACTCA-------ACTGTAACGAAACTCAAT-CTTAAACTGTAAG-CATAAAGTAGGAAACTACGTATC-AAATCTCAATGTCAAGAAAAAAATGT-GCGGAGAA
gi|10 : aTAACCACATAAT-AA-AT-T-CAGATTCC-CCAAAGT-TAA----AG-----CATGT--GTGGATAATGTTCAGAAAGCGTTACTCC----GA------------------TACCACGTT--TCTAAACAAAGTAAAA-------ATTGCCTACATTGTAACTGTAACAAAACTGTATACTT-T-CAGTAAAACATACAGTTGTAAATCAC--ACTGAAACTTCAACATCACAATCAAAGCGTGGTGAAAAccaagt
gi|11 : TGATGAAA----TTGAATCTTG--ATC---TG-----TAACCATA-------AACCA-------GTAAAC----CAC----------ATT-CAAATTTTTTAGCTTCC-----AAACTCACAGCAT--GAT-GGA-----------TA---AAGTgatacgaaaatccaggtg
gi|12 : GAAACCAAGTCGTAAAAAATGATTTTGTTCAAAATAAGTCAACTG-----TAAACAAAGTAAA--A--T---TTTATCTTTCTCTGC-T-C--AT-----TAGCGTAGCAACAACATATCAAA-AT-T-CAGATTCCTTTAA-GT-AACTTAAAG-----CATA---GT-GAGA--------AAAGT-------CTGGAA-------------------CACAACATCCATT--------GTAAgtgaaaaatcaactgaggcagactgaccggcagacagctgaagacgaaacctacagtcctcttcaatttcaacagtaaagggactcctaaaactctgaa
gi|13 : aacatGCATTGTGGAATAGTGGTCCAGAA-----G-C---------TATACT---------------CCGATACCCACGT-----TTCTAACAAATAAAATTGCCTACATTGTA--ATC---AG-----TAAACATA-------CTGTT-------GTAAAT----CGC----------ACTTGAAA--CTTCAACATCC-----ACAATCAAAGCGT--GGT-GAA-----------AA---AGAT
gi|14 : gttaaCTTG--ATCAGATGGAGCTTAAACATA-------GAGTA-------GTAAAC----AGC----------ATACCAAA---TTCAGTTTCCTTATTGAAATCAAAGCATGCGGT-GAA-----------CA---AAATacgaaaatccaggtg
gi|15 : taacacaacaccctataagtgccattaatcttcttgaAA-----AAT---------T-TATT---------------TCGG--CACAACG-----TCCCA---------------TAAACCTCGTAAAC---TG-----TAAGGA----------AAC---------TAAAC-----AC----------ATACCAAA--TTTCAGCATTC-----GATATCAAAGCAT--GATAGAA-----------AA---AAAT--TCGGAG--AATTAAAGGC-AGAAataggaaacaa
gi|16 : tttgtTCAGAT-----T---TTTGA-ACGAACGGGCGG-ATATTATATATATT-----T--TT---AATGCCAGG-----------------------------ATTTCGATCTCGTGCAAATGGA--T---GA------------G---AC-AACTCAATGCTTACAAA--T-------TG-----------GAATTCGTTTAAATCAgaatga
gi|17 : ttgCAAGAATTAATATGGTCA--ACCATGAGACT-TACGACTTAAATA--GCT---------CAAATTAAA--GTAG-TGC--AACTAAAACTTGCTGTGTATCTTCTCTTTTGATAATCACACG
gi|18 : TGTTAACAATCATCAGCAAT----CGA-AGATGTCTTTATCATCACGTCAAACAA-GCTTCATTCGTATCgaaaaaatt
gi|19 : tggaatttttattatttcactttttggaatgtttttttaagtaactAACCG-----CAAAACAAGT--G--AGAC---TTGACCGGCGTCCCC-T-C--ATTACCGTAG----GTGACTACACACC-AAGATGT-CAGATTCT-TAAG-GTACAT----GT-----GATA---GTGGGAA--------AAA
gi|2 : TCTAC--ATTCAATAAT---A-GTCT-----GATAAATCTCGTATCGTAGTGGAA-AGTCAAGAACCAACAACAAAGTCTGATAAATC---------------TCA---TAAAAATCGGTTTACT--GTGACAAAA----CTTGATCTTG--ATC---TG-----TAA-C------------TTA-------GTAAAT----CAT----------ATACCAAA--T-----CTTCC-----TAAATCAAATCAC--GGT-AAAGTGTGGAATACAA---AAATCATCGAAGTTCATTAAAATCAGGAAATTAAGTCTTACAA-----TTTTCATGAGAATAAATCAGCCGTACGATAACAAAAGT--A--A--CAAAAACATCTGTATCTAT-T-CTAAT-----TAA----GTGACCATGTATC-AA-AT-T--------T-TTAA-GT-C-T----GGATATCTATATTTGCAGGCAC-------AAATT-------C----C-------------------CAT-AAATT--TG--------GTAAAC-------ATCACTTA-------AATGGGATGAAACTTGAT-TTcccgga
gi|20 : --------TT-----T--TT---GACATCAGGAAAATA---TCT-TAA------------TATTATGATCTCTTGTAAATAAA--T---G---CAGGAAATATG---ACGAACTTGA---TTACAAA--T-------TG-----------GCATGC-CTTTAATTAg
gi|21 : gattaATCTCTTGCAAAT---------GATGTGGTGAATCTA---AT-AACTTGA---TTA-AAACTT-------TG-----------GTGTGC-CTTAAATTATACAGAaag
gi|22 : aAA-GGTCTGGAA-----AAC---------TACACT---------------TTG---CAAAAAG-----TCCCA
gi|3 : -TGAACAACA-AAGTACA--T-ATA-TACA-GATCAGCCATTTCACTT----C--CT---------TC----AGCGCCTTCCATGGCCACATTCGC-ATCTTA---TTG-CATCAC-TTTCACTAGAGAGTGACGCC-----------AT---ATGG-GG-G-TCTA-CAACTCTTTTGTGTTTA-AAAATAA-------------CAAGA--AAAGAA----------ATTTATAATCTGATG---TT---TTTGG-ATAAGTGGG--------------------------TT---GATATTA-------------T-TAT------------AAGTCCAATCTCTTTTAAATAAATGT---GATGC----ATTCTGTTCATGAAATTGA---TTACAAA--TAGACACATGTATCAGTACATGTATGT-CCTAAA-TATAAAGA------------AAATAGAAAA--ATACAAAGAACTA-ATCAGAG-AACAAATATTGA----GTCATTACTACAAGACTGGA-GTTTTATATATTGTTT-GTTAGAGTAACTTCAACTGTtcaatct
gi|4 : --AACGGCAGTTATCTTTATCGGC-CATCAAACGACACTTCATT-------GTTTTCCTCAG-CCCAGAGTTCTATTGC---T--GT---------CG-TAGGAAAA-T-CTGCTGAACAAT--GAACTTTTGCTTAGAACTACA---------TC----AACATGTTG-A-----ACCT--ACTACCCCT---TTA-C-CTACCTTTC---------TGTTGCC-----------A----------A-G-TC-A--------TGTGCGTTTGTA---TAAAAAGACAAAAAAACAAAA--ACAAAAAAAAAACACCATCTATAATCGGATATGCATGCATTTAC-ACGATTGTGCGGAATAT--------TT-----T--TT---
gi|4 : aTAT--------TT-----T--TTTTGGATACAAGGAAA-TATAAATT-T-T------------GATTT-GGTCTCGTCTAAATA--------GATGCGGCGAATCGG---ACGAACTCGA---TTACAAA--T-------AG-----------G-ATGC-TTTAAATTAtttttaattcatttattatttacttattttttttggatacaaggaaatataaattttgatttggtctcgtctaaatagatgcggcgaatcggacgaactcgattacaaataggatgctttaaatta
gi|5 : aaacggcagttatctttatcggccatcaaacgacacttcattgttttcctcagcccagagttctattgctgtcgtaggaaaatctgctgaacaatgaacttttgcttagaactacatcaacatgttgaacctactacccctttacctacctttctgttgccaagtcatgtgcgtttgtataaaaagacaaaaaaacaaaaacaaaaaaaaaacaccatctataatcggatatgcatgcatttacacgattgtgcggaatatttttttttttaattcatttattatttactTATCTATATGC--AT-----TAG----GTAACCAAATATC-AT-AT-TTCAGATTCC-TTAAAGT-TAC----AG-----CATA---ATGAAAA--------AAAGT-------C----GTCTGGAAAACTATACTTAGCACAAAGTC--CC--------ATAAATCTCACAAATCACTCA-------ACTGTGACAAAACT------TC-AACTGTAAA-CATACAACAGTAAACTACGTACC-AAATTTCAGCTTCCAAATCAAAACATGGTAGAAAA
gi|6 : ACCTCCAGTA-GTC-TAAACATTG-AAGCAGA--------TAAA-GATCAGTATTTTCATTT----C--TG---------TC---TAGCTTCTT--------ACAGTCAC-AACTTTATTCTATC-CCATGTATC---------TGTCTCTTTAGGGTTTATATATGATGCTTA-GATCT-------CTTGTGTGTTAG-A---TAA-------------TGAGT--ATAAAA----------ATTTATTGTTGGA-A---AT---TTTAGGACAAGCAGGTGA-ATAT--------TTATTTTT--TT---AATGCCAGGAAA-TA---------T------------GATTTCAATTTCTTGCAAATAGA--T----ATATGGAAAACCTG---ACAAACTCAA---TCACTAA--T-------TG-----------GTATGT-CCTAAATTATATAGATCTCA-aaagttaaaaaaacaagtgggacaaaagattgataaacagatgcagaagagacaagtacagagttccctccaagtattattgttaggggactacaaccccaaaccacttgaa
gi|7 : ATTGTAGAGAAA-T-TCCGGAA-----AAT---------TATATTCAACTCCAACAACTCTCG---TAAAAATAGC--TCATCTGTGACAAAA------A---CTTG--ATA---TG-----TAAACATACCATTGTAAACAATGCTATGTAAACATATCATTGTAAACAAAATGCCAAA--ATTCAGCTTCC-----TAAATCAAAACAT--GGT-GAA-----------AACAGAAATCA---AAATTCATT-----C----AAC-----CTTTCAA-----TTTTTGTTAAAATGCGTCAACTA-----TAGGGAAAGT--ACGA--C---CTGATCTGTATCAAC-T-G--AT-----TTG----GT------AT-TT-AA----C-CACATTCC-TT-A-GT-CAT----GG-----CATA---GTcat
gi|8 : ATGGGATT---AT---TTTTGGATGATCGGGCGG-ATGC--------TT-----TATTT---ACTACCAGAAAAATA---ATA-TATGATTACATGTACAATTTCGATCTCTCCTAAATAAA-------A-GCGGTGGACCGG---ATGGAGTATG---TTACAAA----------TA-----------GTA-------GAATTATATAAATCTCACACTTCTA-----CAAA--CTACTTTGAACTAGAT-AGAGTTACAAGAATTGATTAGGTCA--ACCACGA-----GA-GC---------TGCTT---------AAC-TCAGAGGTAG-TGT--AAGTAGAACTTGCTGTGTATCTACTCTTTTCATGAGCACATGGAC-----AATAAA
gi|9 : ACGATCATCTGCAA---AATGT----TGCCATGATCATCATTTCAAACAACCCTTT-TTCGTATCCGCTGTC------TC--GAGTTC---CATTA-TTCGTTAGGAACAACCTAACCCCAAGC-AT-CTAGA-GACCAGTATTTTTGGTT----C--CGACGCTGGCTTCACTTAGCGTCTTC-A-----AAATTCAC-GACTTT---CTA-C-CAGCGTTTA---------TGTCGTC-----------ACGTGAAGACTATA-TCTATC---TCTTGTGTGTTTG-A---TAA-------------CAAAG--gatt
blockSeqs : T T GCA A A G CA A C TCC TT CTCAGCCCA T G TATTCGTTAG A T C ATCTGC C C C CCGACGCTGGCTTCACTT CCATGGCC T T ATT T A C ACTAGAGAG TTAGGGTTTATATATGATGCTTAGATCT T AAA AAAGACAAAAAAA A A AAAAAACACC C ATGCATGCA G G A C A TATATATATTT TTG A ATAATATATGATTACATGTACA GATATATGGAA TTC G C TGC TAGACACATGTATCAGTACAT A G C T CACTTCTA . AA C G C T TATG TT G GGAGTTTTATATATTGTTTGTTAGAGT AT CT . . T T G TC C . TCTC T TG C CCAACAACAAAGTCTGATAAATCTCATAAAAATCGGTT AA G TTGCC AAT TA AGA GAGCT C T CCATTGTAAACAATGCTAT ATATCATTGTAAACAAA TT TTT TTATTG GC A GTGTGGAATAC CAG C TCGAAGTTCATTAAAATCAG C AATGA GT TACGA A AACAAAAAC A CTA TACCG CGTA A A GATGT TT A AACTTAAAG TTT G T ATGTTCAG CGTCTGGAAAACTATACTTAG C TTCTAAACAAA TCTCACAA G CATTGTA GTATACTTT A G G A G
blockSeqs : A AA T A A CC A C . TG TC . T CAGTAGTCT T . A AGCATC A . A AGAACTACATC GA . C . . . G . ACGTGAAGACTATATCTATCT . . . A C . C GTT G G G C . TTATTTTT . A TATAAATTTTG AATGTGATGC . G T . CTTTG C . A T AAATAG . TT C . . . TTAG . G TACGACTTAAATAGCTC CT AG . . T A A GC T . G A A AATTATATTCAACTCCAACAACTCTCGTAAAAATAGC CT A T CAT . . . A T AACCA CAC AC C A . . . . C TCGGAGAATTAAAGGCA T . CA . A AAAATTTT . GC . . A . ATTT C A CTGGATATC T G G C GTTACTCCGA A CCATT A A . TCAA . . . T G
blockSeqs : T . . T G . . A TGT A . G TATA A . T CTGTCT CA . A . . . G . ATATGGGGGTCTACAACT . . . T T . C AAT A . T T . TTTAT . A ATATCTTAAT AATGCAGGA . G T . TTG T . T . . . . GAGCTGCTT C . . T C T . A G T GCTATACTCCGATACCCACGT A A C AAC . . . A T CTGTT CGC AC T A . . . . . AAATTCATTC . . TG . C GAGACTTG . C . . G . ATT T . ACATGT . A A . CTGGAA A TTG C A .
blockSeqs : . . C . G . T CCTTC . . A . . . . . AAGTCA . . . G T TAT A . G C . TTT . A TTATA GATGTGGTG . A T . TTG T . T T C AATTTATTTCGGCACAACG . A . GAT . . . G T GAGTA AGC AC T G . . . . . G ACGACCTG . C . . G . ATT T . TAAAG . G C . CC . CCC
blockSeqs : G T T . T . . TTT . . TATG GATGCGGCG . G C . TAG T . AACTACACTTTGCAAAAAG . . . . . . A . AAC CAT GC A T . . . . . G . . A . ATT T . TACAG . . A .
blockSeqs : TTT . . . AAAGCGGTG . . C . TTG T . . . . . . TTA AC T . T . . . . . . C T . CATGG .
blockSeqs : . . GATGA . . A . TA . .
blockSeqCons : C******* ATGGGGTCTATCT*********************** A** ATATGTA******************* GATGCGGCG******** AAT AAGACTTG******* ATT*** T* CCGA****************************
originalCons : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-AAGCANAA-T-ATACTANA-GATCAGCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCC-----------ATGCGATGGCGA-G-TCTA-C---TCTTGTGTGTTTG-A---TAA-------------CAAAG--ATAAAA----------ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAA-TA---ATT-TAT------------AATTTCGATCTCTTGTAAATAAA--T---GATGCGGCGAATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA--ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT--A--A--C---TTNATCTGTATCTAC-T-C--AT-----TAG----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGT-------C----G-------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
finalCons : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-AAGCANAC-------TANA-GATCAGCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCCATGGGGTCTATCT-----------------------CTTGTGTGTTTG-A---TAA-------------CAAAA--ATAAAA----------ATCTATAATCGGATA---AT---TTTNG-ACGAGCGGGCGG-ATAT--------TT-----T--TT---GATACCAGGAAAATATGTA-------------------ATTTCGATCTCTTGTAAATAGATGCGGCG--------AATCTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAA--ATAC--AGAACTA-AT-AGAG-TACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTT-G-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGTAAGACTTG-------ATCTGTATCTAC-T-C--AT-----TAG----GTAACCACATATC-AAATT---CAGATTCCT-TAA-GT-CAC----GG-----CATA---GTGGANA--------AAAGTCCGA----------------------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 2222 111 1111111111 6666666666666666666666666666666666666666666 11 555555555555555555555555 22222222 111 333333333 11111111111111111111111111111111111111111 111 44444444444444 111 4444444444 111111111 1111 111111111111111 66666666666666666666666666666 11111 111111111 33333333333333333333 44444444444444444444444444 2 1 1 1111 11 6666666666666666666666666666 11 1 11 1 33333 2222 55555555555555555555555555555555555555555555555555555555 11 11111 111 11111 4444444444444444444 33333333333333333 111 111111 22222222222 111 33333333333333333333 22222 11 22222 1111 1111 11111 1111 111111 1 222222222222222 111 99999999999999999999999999999999999999999 3333333333333 44444444 3333333 33333333333 1 1
lowQualScore : 1 0 4444 444 3 3 4 33 3 2 666 88 9999999999 7 0 4 3333333333333333333333333333333333333333333 1 11 1 333333333333333333333333 88888888 0 8 1 444 8 8 5 222222222 44444444444444444444444444444444444444444 8 444 44444444444444 555 1 3333333333 1 999999999 1111 1 6 999999999999999 66 9999 11111111111111111111111111111 5 5 22222 777777777 22 5 888 1 1 888 66 22222222222222222222 2 5 1 3 0 77777777777777777777777777 6 6 3 3 3333 33 2 7777777777777777777777777777 999 11 3 88 0 3 1 4 33 0 33333 3333 1 99 1 22222222222222222222222222222222222222222222222222222222 44 2 99999 666 77 000 44444 3 1 2222222222222222222 22222222222222222 44 111 888888 77 5 77777777777 000 2 99999999999999999999 7 55555 33 0 0 00000 1 7777 6 999 6 0000 66666 4444 2 0 5 333333 0 55 1 777777777777777 555 1 1 6 66666666666666666666666666666666666666666 5 0 6666666666666 33333333 2 2222222 00000000000 3 6 3 3 6 0
lowQualScore : . . .... ... . . . .. . . ... .. .......... . . . ........................................... . .. . ........................ ........ . . . ... . . . ......... ......................................... . ... .............. ... . .......... . ......... .... . . ............... .. .... ............................. . . ..... ......... .. . ... . . ... .. .................... . . . . . .......................... . . . . .... .. . ............................ ... .. . .. . . . . .. . ..... .... . .. . ........................................................ .. . ..... ... .. ... ..... . . ................... ................. .. ... ...... .. . ........... ... . .................... . ..... .. . . ..... . .... . ... . .... ..... .... . . . ...... . .. . ............... ... . . . ......................................... . . ............. ........ . ....... ........... . . . . . .
lowQualScore : 0 7 3333 555 5 2 2 55 2 5 999 33 0000000000 3 2 2 8888888888888888888888888888888888888888888 0 00 4 444444444444444444444444 88888888 8 0 0 000 0 0 0 000000000 00000000000000000000000000000000000000000 0 000 88888888888888 000 2 8888888888 0 777777777 2222 0 7 666666666666666 99 2222 33333333333333333333333333333 7 7 55555 222222222 55 0 888 4 1 888 99 44444444444444444444 2 0 0 2 2 33333333333333333333333333 7 7 3 3 5555 88 5 8888888888888888888888888888 000 88 3 33 7 2 0 2 55 5 33333 5555 2 44 4 77777777777777777777777777777777777777777777777777777777 00 2 33333 333 99 000 33333 6 4 1111111111111111111 33333333333333333 00 777 333333 99 7 11111111111 000 5 22222222222222222222 0 00000 00 2 8 00000 0 0000 4 444 7 0000 77777 2222 3 1 7 111111 7 99 4 333333333333333 777 0 0 7 55555555555555555555555555555555555555555 6 6 8888888888888 22222222 0 5555555 88888888888 3 7 3 7 7 7
consensus : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-------AAGCANAAT----C---TANAGATCA--GCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCCA--T---GGGG------T--CTATA--------------C--TCTTGTGTGTTTG-A---TAA-------------CAAAA--ATAAAAA----------TCTATAATCGGATA---AT---TTT-GG-ACGAGCGGGCGG-ATA-----TT--------TT--TT---GATACCAGGAAA--AT-A-------------TAT-A--AT-TT-CGAT-----CTCTTGTAAATA------G--ATGCGGCGAAT-CTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAAA--TACA--GAACTA-AT-AGAGT-ACAAGAATTGATTCGGTCA--ACCACGAGACT-NA-GCTTTANATATTGCTTG-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT----AAGACTTNATCTGTATCTAC-T-C--AT-----TAG----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA-A--------AAG------TC--C--G--A-------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
Reference ( family-3911 ) : NTGTNAACGATCGTCTGCAAT--AACGA-AGATGTCTTTATCGTCACGTCAAACAACNCTTCATTCGTATCCGCTNTCCTCAG-TC--GAGTTCTACCGCCA-T--GTT-TGAACAACG-------AAGCANA------C---TANAGATCA--GCATTTTCGCTT----C--CG---------TC---TAGCGTCTTC-A-----ACATTCAC-ANCTTT---CTA-C-CCGCGTTTC---------TGTCGCCA--T---GGGG------T--CTAT---------------C--TCTTGTGTGTTTG-A---TAA-------------CAAAA--ATAAAAA----------TCTATAATCGGATA---AT---TTT-NG-ACGAGCGGGCGG-ATA-----TT--------TT--TT---GATACCAGGAAA--AT-A-------------TGT-A--AT-TT-CGAT-----CTCTTGTAAATA------G--ATGCGGCGAAT-CTG---ACGAACTCGA---TTACAAA--T-------TG-----------GTATGC-CTTAAATTATANAGATCTCA-A----TAAA-AGAAAAA--TACA--GAACTA-AT-AGAGT-ACAAGAATTGATTCGGTCA--ACCACGAGACT-GA-GCTTTANATATTGCTTG-TAGAGCAACTTCAACTGTAG-TGC--AAGTAAAACTCGCTGTGTATCTACTCNTTCGATAANCACACGTCC-----GATAAATCTCGCATTGTAGAGAAA-GGTCCGGAA-----AAC---------TATATT---------------TCG---CANAAAT-----TCCTAAGTGACGAAA----CTAAATCTTG--ATC---TG-----TAAACATA-------NANCA-------GTAAAC----CAC----------ATNCCAAA--TTTCAGCTTCC-----GAAATCAAAGCAT--GGT-GAA-----------AA---AAATCATCGAAGTTCATTAAAANC-GGAAACTAAGTCTTACAA-----TTTTCGTCAGAATAAGTCAACCG-----TAANAAAAGT----AAGACTTGATCTGTATCTAC-T-C--AT-----TAG----GTAACCACATATC-AA-AT-T-CAGATTCC-TTAA-GT-CAC----GG-----CATA---GTGGANA-A--------AAG------TC--C--G--A-------------CACAAAATC--TC--------GTAAAN-------ATCGCTCA-------ACTGTGACGAAACTCGAT-CTT-AACTGTAAA-CATACAGTAGTAAACTACGTACC-AAATTTCAACGTCAAAATCAAAACGTGGCGGAAAA
gi|1 : TGTAAACGGCCGTCTGCAATTAAACGA-AGATGTCTTTATAGTCACATAAAACAACTCTTCATTCGTACATGC-ATCCTCAGGTC--GAGTTCTACCACCA-T--GTTCTGAACGATG-------AAACATAATTATAT---TATAGTTCG--ACATTTTCGCTT----C--TA---------TC---TAGCGTCTTC-A-----ACATTGAC-ATCTTT---CTA-C-CCGCGTTTC---------TGTTGCCA--T---GCGA------TGGCGAG---------------CCTTCTTGTATACTTG-A---TA--------------CAAAGTCGTAAAAA----------TCTATAATAGGATA---AT---TTT-TG-ACGAGCGGGCGG-ATA-----TG--------TT--TT---GATACCAGGAAATAATTA-------------TAT-A--GT-TT-CAAT-----CTCTTGTAAATACATGTAG--ATACGACGAAT-CTA---ACGAACTTAA---TTACAAA--C-------TG-----------GTATGT-CTTAAATTATAAAGATCTTA-A----TAAA-AAAAAAAGATACA--GAG-TATAT-AAAGT-ACAAGAACTAATTCAGTTA--ACCATGATACT-AA-GCTATACA-ATTGATTGGTAAAACAA--TCAACTGTAGCTGCTAAAGTGAAAATCAATGTGTATCTATTCATTCAATAAACACTTGTCCCAGGGGGTAGA-----CATTGTAGAGAAA-AGTATGGAA-----AAC---------TGCATT---------------TGG---TATAAAT-----TCCTAAGTGACGAAA----CTAAA-CTTG--ATC---TG-----TAAATATA-------TACTA-------GTAAAT----TAT----------ACGACAAA--TTTCAATTACC-----AAAATTAATGCAT--GTT-AAA-----------AA---CAATCA-CG-----C----AAACA-GGAAACTAAGTCTTACAA-----TGTT-GTCGGAATAGGTCAACCG-----TAACAAAAAT----GA-ACTGCATCTGTATCTAT-T-C--GA-----TAG----GTAATCGCATGTC-AA-A----CATACTCC--TAA-GT-TAA----AG-----CATA---GTGGAGA-A--------AGG------CC----------------------CACAAAATG--TT--------GTAAA--------ACCACTCA-------ACTGTAACGAAACTCAAT-CTTAAACTGTAAG-CATAAAGTAGGAAACTACGTATC-AAATCTCAATGTCAAGAAAAAAATGT-GCGGAGAA
gi|10 : aTAACCACATAAT-AA-AT-T-CAGATTCC-CCAAAGT-TAA----AG-----CATGT--GTGGATA-ATGTTCAGAAAGCGTTACTC--C--G--A-------------TACCACGTT--TCTAAACAAAGTAAAA-------ATTGCCTACATTGTAACTGTAACAAAACTGTATACTT-T-CAGTAAAACATACAGTTGTAAATCAC--ACTGAAACTTCAACATCACAATCAAAGCGTGGTGAAAAccaagt
gi|11 : TGATGAAA----TTGAATCTTG--ATC---TG-----TAACCATA-------AACCA-------GTAAAC----CAC----------ATT-CAAATTTTTTAGCTTCC-----AAACTCACAGCAT--GAT-GGA-----------TA---AAGTgatacgaaaatccaggtg
gi|12 : GAAACCAAGTCGTAAAAAATGATTTTGTTCAAAATAAGTCAACTG-----TAAACAAAGT----AAAATTTTATCTTTCTCTGC-T-C--AT-----TAGCGTAGCAACAACATATCAAA-AT-T-CAGATTCCTTTAA-GT-AACTTAAAG-----CATA---GT-GAGA-A--------AAG------TC--T--GGAA-------------CACAACATCCATT--------GTAAgtgaaaaatcaactgaggcagactgaccggcagacagctgaagacgaaacctacagtcctcttcaatttcaacagtaaagggactcctaaaactctgaa
gi|13 : aacatGCATTGTGGAATAGTGGTCCAGAA-----G-C---------TATACT---------------CCGATACCCACGT-----TTCTAACAAATAAAATTGCCTACATTGTA--ATC---AG-----TAAACATA-------CTGTT-------GTAAAT----CGC----------ACTTGAAA--CTTCAACATCC-----ACAATCAAAGCGT--GGT-GAA-----------AA---AGAT
gi|14 : gttaaCTTG--ATCAGATGGAGCTTAAACATA-------GAGTA-------GTAAAC----AGC----------ATACCAAA---TTCAGTTTCCTTATTGAAATCAAAGCATGCGGT-GAA-----------CA---AAATacgaaaatccaggtg
gi|15 : taacacaacaccctataagtgccattaatcttcttgaAA-----AAT---------T-TATT---------------TCGG--CACAACG-----TCCCA---------------TAAACCTCGTAAAC---TG-----TAAGGA----------AAC---------TAAAC-----AC----------ATACCAAA--TTTCAGCATTC-----GATATCAAAGCAT--GATAGAA-----------AA---AAAT--TCGGAG--AATTAAAGGC-AGAAataggaaacaa
gi|16 : tttgtTCAGAT-----T---TTT-GA-ACGAACGGGCGG-ATA-----TTATATATATTT--TT---AATGCCAGGA-----------------------------T-TT-CGAT-----CTCGTGCAAATG------G--ATGAGAC--------------AACTCAATGCTTACAAA--T-------TG-----------GAATTCGTTTAAATCAgaatga
gi|17 : ttgCAAGAATTAATATGGTCA--ACCATGAGACT-TACGACTTAAATA--GCT--------CAAATTAAA--GTAG-TGC--AACTAAAACTTGCTGTGTATCTTCTCTTTTGATAATCACACG
gi|18 : TGTTAACAATCATCAGCAAT----CGA-AGATGTCTTTATCATCACGTCAAACAA-GCTTCATTCGTATCgaaaaaatt
gi|19 : tggaatttttattatttcactttttggaatgtttttttaagtaactAACCG-----CAAAACAAGT----GAGACTTGACCGGCGTCCCC-T-C--ATTACCGTAG----GTGACTACACACC-AAGATGT-CAGATTCT-TAAG-GTACAT----GT-----GATA---GTGGGAA-A--------AA
gi|2 : TCTAC--ATTCAATAAT---A-GTCT-----GATAAATCTCGTATCGTAGTGGAA-AGTCAAGAACCAACAACAAAGTCTGATAAATC---------------TCA---TAAAAATCGGTTTACT--GTGACAAAA----CTTGATCTTG--ATC---TG-----TAA-C------------TTA-------GTAAAT----CAT----------ATACCAAA--T-----CTTCC-----TAAATCAAATCAC--GGT-AAAGTGTGGAATACAA---AAATCATCGAAGTTCATTAAAATCAGGAAATTAAGTCTTACAA-----TTTTCATGAGAATAAATCAGCCGTACGATAACAAAAGTAACAAAAAC---ATCTGTATCTAT-T-CTAAT-----TAA----GTGACCATGTATC-AA-AT-T--------T-TTAA-GT-C-T----GGATATCTATATTTGCAGGCACA--------AAT------TC--C-------------------CAT-AAATT--TG--------GTAAAC-------ATCACTTA-------AATGGGATGAAACTTGAT-TTcccgga
gi|20 : T--------TT--TT---GACATCAGGAAA--AT-A-------------TCTTA--ATATTATGAT-----CTCTTGTAAATA------A--ATGCAGGAAAT-ATG---ACGAACTTGA---TTACAAA--T-------TG-----------GCATGC-CTTTAATTAg
gi|21 : gattaAT-----CTCTTGCAAAT-------G--ATGTGGTGAAT-CTA---AT-AACTTGA---TTA-AAACTT-------TG-----------GTGTGC-CTTAAATTATACAGAaag
gi|22 : aAA-GGTCTGGAA-----AAC---------TACACT---------------TTG---CAAAAAG-----TCCCA
gi|3 : -TGAACAACA-------AAGTACA------TATATACAGATCA--GCCATTTCACTT----C--CT---------TC----AGCGCCTTCCATGGCCACATTCGC-ATCTTA---TTG-CATCAC-TTTCACTAGAGAGTGACGCCA--TATGGGGG------T--CTACAA-------------C--TCTTTTGTGTTTA-AAAATAA-------------CAAGA--AAAGAAA----------TTTATAATCTGATG---TT---TTT-GG-ATAAGTGGGTTG-ATA-----TT-------------------------------AT---------------TAT-A--AG-TC-CAAT-----CTCTTTTAAATA------A--ATGTGATGCATTCTGTTCATGAAATTGA---TTACAAA--TAGACACATGTATCAGTACATGTATGT-CCTAAAT-ATAAAGA------------AAATAGAAAAA--TACAAAGAACTA-ATCAGAGA-ACAAATATTGA----GTCATTACTACAAGACTGGA-GTTTTATATATTGTTTGTTAGAGTAACTTCAACTGTtcaatct
gi|4 : --AACGGCAGTTATCTTTATCGGC-CATCAAACGACACTTCATT-------GTTTTCCTCAG-CCCAGAGTTCTATTGC---T--GT---------CG-------TAGGAAAAT----C---TGCTGAACAATGAACTTTTGCTTAGAACTACA---------TC----AACATGTTG-A-----ACCT--ACTACCCCT---TTA-C-CTACCTTTC---------TGTTGCCA--A---G----------------------------------TCATGTGCGTTTGTA---TAAAAAGACAAAAAAACAAAA--ACAAAAAAAAAACACCATCTATAATCGGATATGCATGCATTT-AC-ACGATTGTGCGGAATA-----TT--------TT--TT---
gi|4 : aTA-----TT--------TT--TTTTGGATACAAGGAAA---T-A-------------TA--A--AT-TT-TGATTTGGTCTCGTCTAAATA------G--ATGCGGCGAAT-CGG---ACGAACTCGA---TTACAAA--T-------AG-----------G-ATGC-TTTAAATTAtttttaattcatttattatttacttattttttttggatacaaggaaatataaattttgatttggtctcgtctaaatagatgcggcgaatcggacgaactcgattacaaataggatgctttaaatta
gi|5 : aaacggcagttatctttatcggccatcaaacgacacttcattgttttcctcagcccagagttctattgctgtcgtaggaaaatctgctgaacaatgaacttttgcttagaactacatcaacatgttgaacctactacccctttacctacctttctgttgccaagtcatgtgcgtttgtataaaaagacaaaaaaacaaaaacaaaaaaaaaacaccatctataatcggatatgcatgcatttacacgattgtgcggaatatttttttttttaattcatttattatttactTATCTATATGC--AT-----TAG----GTAACCAAATATC-AT-AT-TTCAGATTCC-TTAAAGT-TAC----AG-----CATA---ATGAAAA-A--------AAG------TCGTCTGG--AAAACTATACTTAGCACAAAGTC--CC--------ATAAATCTCACAAATCACTCA-------ACTGTGACAAAACT------TC-AACTGTAAA-CATACAACAGTAAACTACGTACC-AAATTTCAGCTTCCAAATCAAAACATGGTAGAAAA
gi|6 : ACCTCCAGTA-GTC-TAAACATTG-------AAGCAGA----------TAAAGATCA--GTATTTTCATTT----C--TG---------TC---TAGCTTCTT--------ACAGTCAC-AACTTTATTCTATC-CCATGTATC---------TGTCTCTT--T---AGGG------T--TTATATATGATGCTTAGATC--TCTTGTGTGTTAG-A---TAA-------------TGAGT--ATAAAAA----------TTTATTGTTGGA-A---AT---TTTAGG-ACAAGCAGGTGA-ATATTTATTT--------TT--TT---AATGCCAGG-AA--AT-A-------------TG-----AT-TT-CAAT-----TTCTTGCAAATA------GATATATGGAAAAC-CTG---ACAAACTCAA---TCACTAA--T-------TG-----------GTATGT-CCTAAATTATATAGATCTCA-aaagttaaaaaaacaagtgggacaaaagattgataaacagatgcagaagagacaagtacagagttccctccaagtattattgttaggggactacaaccccaaaccacttgaa
gi|7 : ATTGTAGAGAAA-T-TCCGGAA-----AAT---------TATATTCAACTCCAACAACTCTCG---TAAAAATAGC--TCATCTGTGACAAAA------A---CTTG--ATA---TG-----TAAACATACCATTGTAAACAATGCTATGTAAACATATCATTGTAAACAAAATGCCAAA--ATTCAGCTTCC-----TAAATCAAAACAT--GGT-GAA-----------AACAGAAATCA---AAATTCATT-----C----AAC-----CTTTCAA-----TTTTTGTTAAAATGCGTCAACTA-----TAGGGAAAGT----ACGACCTGATCTGTATCAAC-T-G--AT-----TTG----GT------AT-TT-AA----C-CACATTCC-TT-A-GT-CAT----GG-----CATA---GTcat
gi|8 : ATGGGATT---AT---TTT-TGGATGATCGGGCGG-ATG-----CT--------TTATTT---ACTACCAGAAAA--AT-AATATATGATTACATGT-ACAAT-TT-CGAT-----CTCTCCTAAATA------A--AAGCGGTGGAC-CGG---ATGGAGTATG---TTACAAA--T--------A-----------GTA-------GAATTATATAAATCTCACACTTCTACA-A----AC--TACTTTGAACTAGAT-AGAGTTACAAGAATTGATTAGGTCA--ACCACGAGA------GCT---------GCTT--------AACT-CAGAGGTAG-TGT--AAGTAGAACTTGCTGTGTATCTACTCTTTTCATGAGCACATGGAC-----AATAAA
gi|9 : ACGATCATCTGCAA---AATGT----TGCCATGATCATCATTTCAAACAACCCTTT-TTCGTATCCGCTGTC------TC--GAGTTC---CATTA-TTCGTTAGGAACAACCTAACCCCAAGCAT-------C---TAGAGACCA--GTATTTTTGGTT----C--CGACGCTGGCTTCACTTAGCGTCTTC-A-----AAATTCAC-GACTTT---CTA-C-CAGCGTTTA---------TGTCGTCACGT---GAAGACTATAT--CTAT---------------C--TCTTGTGTGTTTG-A---TAA-------------CAAAgatt