lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111
lowQualScore : 111111 1111 1 333333 3333333333333333 1111 33333 44444444444 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 1 4444 2222 111 1 222222222222 555555 66666666666666666666666666666666666666666666666666666666666 111 111 1111111 111 55555555555555555555 1111 444 111111111 1 2222222222 11 22 55555 11111 11 22 1 11 11 33 111111111111 1 5555555555 2 22222222 1111 444444 111111 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 333 6666666 222 333333 333 444 33333333 3 55 0000000000000000 1 11 2 33 1 4 1 1
lowQualScore : 5 000000 5555 5 4 4 444444 4 9999 6666666666666666 0000 5 5 11111 55555555555 4 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 444 0 1111 66 0000 666 66 5 5 5 5 5 333333333333 0 222222 5 44444444444444444444444444444444444444444444444444444444444 6 111 333 6 6 6 4444444 8 444 0 4 66666666666666666666 8 0 8 8 8 8 7777 3 9 6 333 555555555 5 1 6 5555555555 55 6 3 6 33 6 1 66666 6 66666 6 0 66 777 8 11 3 8 8 0 55 5 5 5 5 0 88 6666 66 5 77 8 22 6 0 5 555555555555 5 1 3333333333 0 6 8 0 00000000 4444 3 3 333333 6 1 666666 8 1 444 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7 3 77 3 777 1111111 666 4 2 2 222222 55 4 555 777 7 22222222 4 55 0 8888888888888888 1 3 88 4 0 11 5 0 6 5 6 5
lowQualScore : . ...... .... . . . ...... . .... ................ .... . . ..... ........... . .................................................................................. ... . .... .. .... ... .. . . . . . ............ . ...... . ........................................................... . ... ... . . . ....... . ... . . .................... . . . . . . .... . . . ... ......... . . . .......... .. . . . .. . . ..... . ..... . . .. ... . .. . . . . .. . . . . . .. .... .. . .. . .. . . . ............ . . .......... . . . . ........ .... . . ...... . . ...... . . ... ............................................................................................................................................................................... . . .. . ... ....... ... . . . ...... .. . ... ... . ........ . .. . ................ . . .. . . .. . . . . . .
lowQualScore : 0 666666 6666 0 4 4 666666 4 4444 2222222222222222 6666 0 0 66666 77777777777 4 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 000 0 9999 99 9999 222 99 0 0 0 7 7 999999999999 7 666666 7 44444444444444444444444444444444444444444444444444444444444 7 000 555 7 7 7 3333333 0 222 8 0 11111111111111111111 0 8 0 0 0 0 2222 2 8 0 999 888888888 7 7 7 2222222222 88 7 7 7 33 7 8 22222 7 77777 7 6 22 000 0 00 8 0 0 8 00 7 7 7 7 6 88 8888 00 0 99 7 33 4 1 7 111111111111 7 4 6666666666 3 7 3 0 22222222 8888 2 2 888888 0 8 888888 0 4 000 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 3 00 3 000 0000000 555 0 5 5 555555 55 0 333 777 3 00000000 2 00 7 3333333333333333 0 3 55 0 0 00 0 0 0 0 0 0
consensus : TTTTTTTTTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATAT--TT--AGTCA-GG----ATT----TTACA--NN--TGA----CCCTT-A-CAAA--CCCA-----ACCTG-ACCA-GGGG--GTACA-GGGTAT---GA-GTAT--AA--ATT----------A---CTC-TCTC----A-C--ACACA----A--------TTCACACAGG-ACAG-ACA--TTCACTC--TGAA--C-AAAGGAA--AGAAGTAAAAG--G-A-G-AAGAA-AGTTGGACT-GTG-------T----ACTCTGG--CTG-GGT-TTCAAAAC----T-------A-TAC--AAATA-A-CA--CAAA--TGTGTATT---TAATAC--A-T-G--NCAAGGCTGT-TACT-A-A----A--GATAC-A-TCATTTAAACATA--C-AT--ACA---GTACATAT-ACTACTGA-GTG-GT-TAAGAC-A-G--TTAACACACTCTTGT---ACTTCATTTATAGTTTNAGTTTAT-GAAGAGC----AT----AC--TAA-ATTACA-CTT-TATA-ACAAATACATGTGT-A-TGTACAA-C-----TAAGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATGAAA-T-TATACTTGAGT-TTT-CAAAG-ATTCA-A-ATAATTTCCATTT-TTTTCAAACTGATTTTGTACAATT-ATTT--TTCCATGC-AGTTTGT-TTT-C-T--A---C-T-T-GT--A-NNCA-TTAATCCAG-ATAACTTTAAATT-T--A---TTCA---ATGATAGACAATTTCC-TNAAATACATTTTGTAAAGTA--T-A-TG-AAAT---GTTTCAAGT--TGATTAATTT-AT--AAGT--TTA-C-ATTTCATTTTC---------------------TGAACAC-C-AAGGANAAAAGTTTTC-TTATCAGTTATAA-CAAC-TCGAAN-GCAAAANTT-G-TCAC-----ACCATTATTGCACATC-CTTAAAA---AGATACTAAACTTTTTCACAGTCATGCAT-AATGTG-TTCCTAATGACCCCCCCCCCTTCTCTCTTCTNAANANGAAAGAACCATAGATCGTTGTCNNATNTCTT-TAAT--ATTTTCAAAAA--TGNTA-TTTGTAG-TTAAAATTTT--ATGATTTATTCGATAC-GC------------AACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATNTTTTATGAATTCCCCTCCACTCCTTCTTGAGAT-ATCTCAAATTGATCATCCCATGTTTT
Reference ( gi|1 ) : TTTTTCTTTT-C---AGTTT----ACCAC-ATTTATTCAGGTT-ATAT--TTC-AGTCA-GG----ATT----TTACA--AT--TGA----CCCTT-A-C-A---CCCA----GACCT--ACCA-GGGG--GT--A-AGGTAT---AACGTAT--AAT-ATT----------A---CGC-T-------A-A--ACAC-----C--------TTCACACAGG-ACAG-ACAATTCCACTC--TGAA--A-AAAGGAG--AGAAGTAAAAG--G-A-G-AAGAA-AGTTGGACT-GTG-------T----ACTCTGG--T---GGT-TTCAAAAC----T-------A-TAC--AAATA-A-CA--CAAAT-TGTGTATT---TAATAC--A-T-G--TCAAGGTTGT-TACT-A-A----A--GATAC-A-TCATTTAAA-ATA--C-AT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-A-G--TTAACACACTCTTATTT-ACTTCATTTATAGTTTCAGTTTAT-GAAGAGC----AT----AC--TAA-ATTACA-CTTATATA-ACAAATATATGTGTTACTGTACAA-C-----TAAGGGAGAAAAAAAAAAAACTTTTTC-AGATA--CTTATGAAA-T-TATACTTGAG--TTT-CAAAG-ATTCA-A-ATAATTTCCATTTCTTTTCAAACTGATTTTGTACAATT-ATTT--TTCCATGCCAATTTGT-TTT-C-T--A---C-T-T-GT--A-AAAAGTTAATCCAG-AAAATTTTCAATC-T--A---TTCA---ATGATAGACAATTTCC-TT---TACATTTTGCAAAATA--T-A-TG-AAAT---GTTTCAAATTTTGATTAATTTCAT--AAGTCGTTA-C-ATTTCACTTTC---------------------TGAACAC-C-AAGGATAAATGTTTTC-TT-TCAGTTCTAA-T-AC-TTGAATTGTAAAAATTCA-TCAC---AAACCAAGATAGCACATT-CTTAAAATCTAATTACTAACTTTTTTCACAGTCATGCAT-AACATG-TTTA-AATGACTCTTCTC---TCTCT-TTCTAAACAGAAAGGGAC-ATAGATCGTTATCTGATTTTCT-TAATACGTTTTCAAAAAAATGTTA-TTTGTAGATTAAAATTTTTGATGGTTTATTCGATACTGT---------A--AACCATTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATACTTTTCAACTCTTTCTTGAGATGATTTCAAATTTATTATCCCATTTTTT
gi|2 : TTTTTTTTTTAC---AGTTT----ACAAC-ATTTATTCAGGTT-ATAT--TT--AGTCACGG----ATT----T-ACA---TGATGA----CCCTTGA-C-AA--CCCA----AACCTG-ACCA-GGGA--C-----AGGGAT---AA-GTGA--AATCACTCTCTCTGCACA---CACAC-------A-C--ACAC-----A--------TCCACACAGA-CCAGGACAGTTC-ACTC--TGAACAA-AAGGGAA--AGAAGAAAAGG--A-A-G-AAGAA-AGTTGGACT-GTG-------T----ACTCTGG--CTGCGGT-TTCAAAACG---T-------AACAC--AACTA-AACA--CAAAA-TGTGTATT---CAATACCAA-TTG--GCAAGTATGT--ACT-A-A----AAAGATACCA-T-ATTTAAACATA--CCAT--ACA---GTACATAT-GCTGCTGACGTG-GTCTAAGAC-AAG--TTAACTCACTCTTGT---ACTTCATCTATAGCTT-AGCTTAT-GAAGAGC----AT----ACC-TAA-ATTACAACTT-TATACACAAATATATGTGTCA-TGTACAAAC-----TAAGGG-GAGACAAAAAAAACTCTTTC-AAGTA--CTTATGAAAAT-TATACTTGAG--TTT-CAAAC-ACTCACA-ATAACT-CCATTC--TTTCAAACTGATCTTGTACAATTCATTT----CCATGC-AATT-GT-TTT-C-CTGA---C-T-TTGTT-A-AACATCTAATCCAGGAAAATTGTAAATCAT--AACTTCCA---A--ATAGACCATTTTC-CT---TACATTTTGTAAAAAA--TCA-TGCAAAT---GTTTCAA----TGAT-AATTTTA---AAGTT-TTA-CCATTTCACTTTCAACACGACACCCCGCCATTTCTGAACAC-CCAAGCA-AAATGTTTTC-TTATCAGTCATAAAT-A--TTGAACAGCTAAAATTAGGTCACGCAAAACCAAGATTGC-CATTTCTTAAAA---AGATACTAAACTTTTTCACAGTCATGCATTAATATG-TTCCTAATGACTCT---C---TCTCT-T-CTTAACAGGAAAGAACCATAGATCATTATCTGATTTCTTGTAAT---TTGGC-ACAAAATGCTACTTTGTAGTTTAA
gi|3 : attTTTTTATTTA-C---AGTTTCT--ACAACCATCTTTTCAGGTTTATAT--TT--AGTCA-GG----ATTG---TTAAC--ATA-TGA----CCCTT-AGC-AAAGCCCA------CCTGGACCACGGAG--GT--ACAGGTAT---AA-GTGT--AAA-ATT----------A---CTC-T-------CTC--ACAA-----A--------TCCACACAG--ACAG-TCA--TTCA-TC--TGAA--ACAAAGGAA--AGAAGTAAAAG--G-AAG-AAGAA-GTTCGGACTTGTG-------T----A-TCTGGC-T---GGG-TTCAAAAC----T-------A--A---AAATA-A-CA--CAAATGTGTATATG---TA-TAC--AAT-G--TCAAGGTTGT-TACT-A-A----A--GATAC-A-T-ATTAAAACATAGCC-AT--ACATGTGTACCTATCGCTGCTGA--TGAGT-TTAGAC-A-AGTTTAAC-CACTCTTGT---ACTTCATT-ATAGCTATAGGTTATTGAAGAG-----AT----AC--TAA-ATTA-A-CTGTTATA-ACAAATATATGTGT-A-TGTACAA-C-----TAGGGAGGAAAAAA--AAAACTTTTTC-AGATAGCCCTATGAAA-TATA-ACTTGAAGTTTT-CAAAG-ACTCA-A-AT-ATTTCCAg
gi|4 : aattttTTTTTCCTT--C---AGTAT----ACAAC-ATTTATTCA--TT-ATAT--CT--AGT---AG----ATT----TAACATAAT----A----CCCTT-A-C-A---ATCA-----ACC---ACCA-GGTG---T--ACAGG-ATTGGGA-GTATTAAAT-ACT--------------CTC-T-------C-ATTACACA----C--------TTCACACAGG-AC-G-ACA--TTCACTC--TGAA--C-AAACGAT--AGAAGTAAAGGATG-A-G-GAAAA-AGTT--ACT-GTG-------T----ACTCCGGCTC---GGTCTTCAAAAC----T-------A------AAAAA-A-CA--AAAAT-TA---GTT---TAATACA-A-T-G--TCAG---TGTATACT-A-A----A---ATAC-A-TCATTCAA----A--C-AT-----------CATAT-ACTAC-GA-GT--GT-TAA-ACAA-G--TT-ACACACTTGTGCTTAAATTCATTC-TA---TCAGTTATT-GAAG-GC----ATGCAAAC--TAAGATAACA-CTTA---A-ACA-----------------GCAA-C-----TAA-GGAGAAAAAAAAA-------TTCAAGATA--C-TAC-AAA-T-AGTAC-TGAGT-TTT-CAAAG-ATTCA-A-A
gi|14 : aTTTTTTTTTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATAT--TT--AGTCA-GG----ATT----TTACA--TA--TGA----CCCTT-A-CAA---CCCA-----ACCTG-ACCA-GGGG--GTACA-GGGTAT---AA-GTAT--AA--ATT----------A---CTC-TCTC----A-C--ACACA----CACATTAAATTCACACA-G-ACAG-ACA--TTCACTC--TGAA--C-AAAGGAA--AGAAGTAAAGG--A-A-G-attc
gi|5 : TTTTTTTTT-GTAAAGTTTCACAACAGC-ATTTATTTAAATT-ATATACTTGGAGTCA-AGTGAGATTCATATAATA--AT--TAAAGTCTCTTT-A-C-AAA-CCCACTCTGACC---AAGA-GGGGTAGC--A-GGGTTT---GAGGTAT--TAA-ATT----------AACTCTC-T-------A-AC-ACACAGCAAC--------TTCACAAAAGTACAGTACA--TCAGCTCACTGAA--C-AAAGGAATAAGAAGTAAAAG--G-ACG-AAGAAGAGTCGGACT-GTGGCAGCAATCCGGACTATGG--A---GGT-TTCAAAAA----T-------A-TAC--CATTATA-GA--C---------TACTCCATAGTAC--A-T-GGTTCAA--CTGT-TGC--A-ATTCCA--GGTAC-ACTCA---AAA-ATG--T-AT--
gi|29 : TTTTTTTTT-T---AGTTT----ACAAG-ATTTATTCAGGTT-ATAT--TT--AGTCA-GG----ATT----T
gi|7 : TTTTTTTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATAT--TT--AGTCA-GG----ATT----TTACA--TA--TGA----CCCTT-A-CAA---CCCA-----ACCTG-ACCA-GGGG--GTACA-GGGTAT---AA-GTAT--AA--ATT----------A---CTC-TCTCACACA-C--ACAC-----A--------TTCACACA-G-ACAG-ACA--TTCACTC--TGAA--C-AAAGGAA--AGAAGTAAAAG--GAA-G-AAGAA-AGTTGGACT-GTG-------T----ACTCTGG--CTG-GGT-TTCAAAACGAAAT-------A-TATCGAAACA-A-AA--CAAA
gi|26 : TTCC-C---AGTTT----ACAAC-ATTTATTCAGTTT-ACAT---------------------------AC--------GA----CCCTT-A-CAA---CCCA-----ACCTG-AACA-GGGG--GTACA-AGGTAT---GAacggaacattttacaaccaaactttttca
gi|24 : TT-A---AGTTT----ACACC-ATTTATTCCGGGT-ATAT--CCC-AGACA-GG----ATT----TTACA--TA--AAA----CCCTC-A-CAA---CCCA-----ACCTG-ACCA-ata
gi|20 : --ACCA-GGGGT-AC--A-GGGTTT---GA-GTAT--AA--GTT----------A---CTC-TCTCAC--A-C--ACAC-----A--------TTCACACAG--ATAG-GCA--TTCACTA--TGAA--C-GAAGGAT--AGAAGTAAAAG--G-AGG-AAGAA-AGTttagtggatacaggg
gi|9 : ctg--ACAC-----A--------TTCACAT-GG-ACAG-ACACT--CATTC--TGAG--C-AAAAATT--AGAAGTAAAAG--G-A-GGAAGAA-AGTTGGACT-ACA-------C----AGTCTGG--CTA-GGT-TTTAAAAA----TATCATGAA-TAC--AAATA-T-CAATCAGA--TGTGTGTT---GCA-----A-T-G--CCAAGGCTGT-TACTAA-A----A--GAT
gi|12 : tatgacattacattgcttcattacaacctgatcagaaggtatttaggtatttctctttcacacacacacacTGGACT-GTG-------T----ACTTTGG--CTG-GGT-TTCAAAAA----T-------A-TAC--AAATA-G-CA--CAA------------------------T-G--ACAAGGTTGT-TGCT-ACA----A--GATAC-A-ACATTTAAA-------------CA----TACATAT-ACTACTGA-GTG-AT-TAAGGC-A-T--TTAACACATTCTTGT---ACTTTATTCA-AATTAAAGTT-AT-GAAGAGCTTGCATT---AC--TAA-ATTATA-CTT-TATA-ACAAATA
gi|31 : TA--C-ATGTACA----TACATAT-ACTACTGA-GTG-GT-TAAGAC-A-G--TTc
gi|15 : CTCTTGT---ACTTCATTT-TAATTTCAGTT-AT-GAAGAGC----AT----AC--TAA-ATTACA-CTT-TATG-ACAAATACATGTAT-A-TGTACAA-C-----TAAGGGG--------AAAAACTTTTCA-AGATA--CTTATGAAA-T-CATGCTTGAGT-TTT-CAAAG-ATTCA-A-ATAATT
gi|23 : T-ACTTCATTTCTGGTTTAAG-TTAG-GAGGAGC----A-----ACAACAA-AATATA-C-TAAACA-ACAAATACATGTA-TA-TGTACAA-CTAATATAAGGAAGAAA
gi|17 : tgtgTGTACAA-C-----TAAGGGGGAAAAAAACAA--CTTTTCA-AGATA--CTTCTGAAA-T-TATACTTGAGT-TTT-TAAAG-ATTCA-A-ATAATTTCCATTTTTTTTCAAACTGA-TTTGTACAATT-ATTt
gi|6 : gtataACTTGAG--TTTTCAATG-TTTCA-A-ATAATTTCCATCT---------------TTATATACTT-GTTT--TCCC-TGC-AGTTTGT-TTTTC-T--A---C-T-TTGT--ATACAA--TAATCCAG-ATAACTTTAAATT-T--A---TTCA---ATGATAGACAATTTCC-TAAAATACATTTTGTAAAGTACCT-A-T--ATAT---GTCTCAAGTGATAATTAACT------AAGT--TTA------TCATTT-----------------------------C-C-AAGGAGAAAAGTTTTCTTT-TCAATTATAA-CAAC-ATCAAATGCAAAAGTT---TCAT---TCACCATTATTGCACATC-CTTAA----------------TTTTTCAT--TCAAGCAT-AATGTGATTT
gi|11 : TGAA--TT---AAAGTATGTA-ATATAATT---ATTTCTTT----ACTG--TTTGCACAATT-ATTTTCTTCCATG--AGTTTTT-TTT-C-T--A---CTT-T-GT--A-TGCA-TTATTCCAG-ATAACTTTAAATT-A--A---TTC----ATGATAGACAAGTTCCTTT---TACATTTTGTAAACTA--T-ATTG-AAAT---GTTTCAAA---TGA-TAA--TCAT--A
gi|18 : gttaATTTATTTTCAAACTGATTT-GCCTAATT-ATTT--TTCCTTGCAGCTTCTT-TTT-C-T--A---CTT-T-GT--A-gttctaacctt
gi|8 : agtttaagttatgaattaagagcatgcaatactacattTTTATATACTT-GTTT--TCCC-TGC-AGTTTGT-TTTTC-T--A---C-T-T-GTGTA-ACAA---AATCCA--ATAACTTT-AATT-TTAA---TTCATGAATGAT---CAATTTCC-TAAAATACATTTTGTAAAGTA--C-C-TG-ATATATAGTCTCAAGT---GAT-AATTTAACTCAAGT--TTA------TCATTT-----------------------------C-C-AAGGAAAAA-GTTTTC--T-TCAATT-TAA-CAACATCAAAT--CAAAGTTTCA-TT-C-----ACCATTATTGCACATC-CTTAtgcattattcca
gi|28 : TTTGTACAATT-ATTT--TTCTATA-TAGTCTGTGTTT-C-T--ATACT-T-T-GT--A-TACA-TTAGTCCAG-AA
gi|27 : aACAATT-ATTT--TTCCATG-CACTTTGT-TTT-TAT--A---C-TCT-GT--A-TGCA-TTAGTCCAG-ATAATTTTAAATC-T--A---TTCA---
gi|22 : TTTTGTAAAATA--T-A-TG-AAAT---ATTTCAAA---TGA-TAATTT-ATG-AAGT--TTACC-ATTTCAATTTC---------------------TGAACACTT-AAAGATAAAAGTTTTC-TTATCAGTTATAA-T-AT-T
gi|10 : ACAGTCATGCAT-AATGTG-TTCT-AATGACCCCCCCCCCTTCTCTCTTCTAAAAATAAAA--AC-ATAGATCGTTGTCGTATATT---TAAT-CATTTTCATAAA---GGTA-TTCGTAG-TTAAAATATT--ATGATTTATTCGATAC-AC---------C--AACCGATGTAATTTGCTATCTTTAGTATTC-TTAAAAAATATATTT-ATGAAT--TCTTCCACTCTT
gi|21 : T-TAATA-ATTTTCAAAAA--TGT-A-TTTGTAG-TTCATATTTT--ATGGTTTATTCGATACTGTTTAATTTACACTAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAA
gi|16 : A-TTTGTAG-TTAAAACTTT--AGGATTTATTCGATA-----------------ATCATTGTGAGTTGCTATGTTTTGTATTCATTAAAA--CATTTTTTATGAATTCCTCTCCACTTCTTCTTGAGAT-ATCTCAAATTGATCATCCCATGTTTT
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ATATTCACATAATAATTAATAGTCAGGGTTTTGGCATGCGCTTACAAACCCACCTGTCTTGGGGATACAGAGTATTTTATCTACCATTTACTCACACATGCACTCCAATGGGCACTCAAAGGAAGAGGGTTAAGAAAGAGATAAAATACCGTCTGGCTAATCATCTGTTCAAGATGATGTATAC
Unaligned ( gi|19 ): ATCTACCATTTACTCACACATGCACTCCAATAGGCACTCAAAGGAAGAGGGTTAAGAAAGGGATAAAATACCGTCTGCATGCTAATCATCTGTTCAAGATGATGTATACA
Unaligned ( gi|25 ): AATATTGCACATACAATATCAAGATTTTAACGTGCCCTTACAAACTGTCTGACAAGGGGGTACACAGGTTTGTTTTTTATCTACCATTTA
Unaligned ( gi|30 ): GGGGGTACAGGGTTTGAGTATAAATTACTCTCTCACACACACACTC
Alignments
lowQualScore : 11111 1111 11111111 1111 55555555555555555555555 1 1111 111111 222222222222 333333333333333333333333 11 1111 33333333333333 1 1 1111 111111 111 1 11 1 11111 1 111 111 111 3333 111111 111 33333333 3333333 11 222222 88888888888888888888888888888 11 22222 222 666666666666666 1 4444444444444444 1 2222 44444444 1 222 1111 3333 1111 1 11 9999999999999999 1 22 1111 2
lowQualScore : 4 11111 4444 4 3 3 22222222 3 7777 0000 7 555 7777 3 3 8 3 3 555 66 1 2 44 0 6 3 3 3 3 666 3 55 33333333333333333333333 777 4 4 99 55 4 55 88888 55 4 55 4 6 4 5 0000 2 5 555555 5 777777777777 5 888 5 5 66 5 0 111111111111111111111111 888 999 5 33 5 2222 6 888 22222222222222 6 6 6 6 3 99 0 6 1 77 5 33 6 0 1 5 2222 555555 5 77 5 77 7777 5 4 0 111 5 77 0 1 3 6 99 1 6 5 5 3 5 5 5 5 3 2 00 0 4 66 6 5 5 5 0 5 66 00000 5 0 5 777 000 1 5 888 111 111 0 0 8 5555 2 111111 6 111 88888888 3333333 8 11 777777 2 11111111111111111111111111111 8 8 1 11 5 11111 333 1 888888888888888 77 3 0 4444444444444444 3 0 6666 0 44444444 6 1 1 4 333 0 22 1 7777 7777 4444 3 0 8 8 1 33 8888888888888888 0 7 11 1111 0 0 2 2
lowQualScore : . ..... .... . . . ........ . .... .... . ... .... . . . . . ... .. . . .. . . . . . . ... . .. ....................... ... . . .. .. . .. ..... .. . .. . . . . .... . . ...... . ............ . ... . . .. . . ........................ ... ... . .. . .... . ... .............. . . . . . .. . . . .. . .. . . . . .... ...... . .. . .. .... . . . ... . .. . . . . .. . . . . . . . . . . . .. . . .. . . . . . . .. ..... . . . ... ... . . ... ... ... . . . .... . ...... . ... ........ ....... . .. ...... . ............................. . . . .. . ..... ... . ............... .. . . ................ . . .... . ........ . . . . ... . .. . .... .... .... . . . . . .. ................ . . .. .... . . . .
lowQualScore : 4 66666 0000 0 6 6 77777777 3 1111 4444 3 666 7777 6 6 7 3 1 444 88 2 9 22 1 7 3 6 6 6 444 6 00 44444444444444444444444 222 0 0 55 55 0 55 77777 55 0 55 0 0 4 0 6666 5 0 999999 0 999999999999 1 222 0 0 99 0 1 666666666666666666666666 999 000 7 66 7 1111 7 777 00000000000000 7 7 7 7 3 22 8 0 0 99 7 77 6 6 7 7 1111 999999 7 99 7 44 9999 7 0 4 666 7 99 7 4 2 7 22 7 7 7 0 2 0 0 0 7 3 5 33 1 4 99 5 0 0 0 0 0 99 88888 0 0 0 000 444 2 0 777 777 777 8 8 0 4444 2 000000 7 777 88888888 4444444 0 00 888888 2 00000000000000000000000000000 0 8 4 66 6 00000 555 0 000000000000000 00 2 0 0000000000000000 2 0 0000 7 77777777 7 0 0 0 000 7 00 0 0000 0000 8888 2 8 0 0 0 88 2222222222222222 0 3 33 7777 7 0 5 5
consensus : TTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA-GG----ATT----TTA-CA-TATGA----CCCTT-A-CAAACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATGA-GTA-TAA-A-TT-ACTCTCT---CAC-ACA--C--------AC--------A----TTCACACAGG-ACA-G-ACA--TTCACT--CTGAA-CAAA--GGA--A--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGACT-GT----GTACTCTGG-CT----G-GGT-TTCAAAAC----T-------ATAC--AAAT-A-ACA--C-AAAT-GTGTA-TT---TA-ATA-C-A--TG--TCAAGGTTGT-TACT--A-A----AGATA-CA-TCATTTAAACATA--CAT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTGT--ACTT-CATTTATAGTTTCAGTTTAT-GAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATA-ACAAATACATGTGT-A-TGTAC-AACTA--AGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTTTCAAAG-ATTCA-A-ATAATTTCCA-TTT-TTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATG-CAG-TTTGT-TTT-C-T--A---C-T-T-G-TA-TACA-T-TAATCCA-GATAACTTTAAATC-T-A---TTC---AATGATAGACAA-TTTCCTNAAATACATTTTGTAAAATA--T-A-TG-AAAT---GTTTCAAA---TGA-TAATTT-A---T-AAG-T--TTA-C-ATTTCACTTTC---------------------TGAACACC-AAGGANAAAAGTTTTCTTATCAGTTATAACAACATCGAACTGCAAAAATT--GTCATTCG----ACCANNATTGCACA-TCCTTAAAA---AG-TACTAA-CTTTTTCACAGTCATGCA-TAATGTGTTC-T-AATGACTCCCCCC---TCTCTCTTCTAAACA-GAAAGGG-CATAGATCGTTATCTGATTTCCT-TAAT-A--TTTTC--A-AAAATGNTA-TTTGTAG-TTAAAATTTT--ATGGTTTATTCGATACT-----------ACNAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACAT-TTTTATGAATTCCTTTCCACTCTTTCTTGAGATGATCTCAAATTNATCATCCCATNTTTT
Reference ( family-3908 ) : TTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA-GG----ATT----TTA-CA-NNTGA----CCCTT-A-CAAACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATGA-GTA-TAA-A-TT-ACTCTCT---CAC-ACA--C--------A---------A----TTCACACAGG-ACA-G-ACA--TTCACT--CTGAA-CAAA--GGA--A--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGACT-GT----GTACTCTGG-CT----G-GGT-TTCAAAAC----T-------ATAC--AAAT-A-ACA--C-AAAT-GTGTA-TT---TA-ATA-C-A--TG--NCAAGGCTGT-TACT--A-A----AGATA-CA-TCATTTAAACATA--CAT--ACA---GTACATAT-ACTACTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTGT--ACTT-CATTTATAGTTTNAGTTTAT-GAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATA-ACAAATACATGTGT-A-TGTAC-AACTA--AGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTTTCAAAG-ATTCA-A-ATAATTTCCA-TTT-TTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATG-CAG-TTTGT-TTT-C-T--A---C-T-T-G-TA-NNCA-T-TAATCCA-GATAACTTTAAATT-T-A---TTC---AATGATAGACAA-TTTCCTNAAATACATTTTGTAAAGTA--T-A-TG-AAAT---GTTTCAAG--TTGATTAATTT-A---T-AAG-T--TTA-C-ATTTCATTTTC---------------------TGAACACC-AAGGANAAAAGTTTTCTTATCAGTTATAACAAC-TCGAA-NGCAAAANTT--GTCA--C-----ACCATTATTGCACA-TCCTTAAAA---AGATACTAAACTTTTTCACAGTCATGCA-TAATGTGTTCCT-AATGACCCCCCCCCCTTCTCTCTTCTNAANANGAAAGAACCATAGATCGTTGTCNNATNTCTT-TAAT-A--TTTTC--A-AAAATGNTA-TTTGTAG-TTAAAATTTT--ATGATTTATTCGATAC------------GC-AACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATNTTTTATGAATTCCCCTCCACTCCTTCTTGAGAT-ATCTCAAATTGATCATCCCATGTTTT
gi|1 : TTTTTCT-TTT-C---AGTTT----ACCAC-ATTTATTCAGGTT-ATA-T--T--TC-AGTCA-GG----ATT----TTA-CA-ATTGA----CCCTT-A-CA--CCCAGACCT--ACC---A--GGGGGTA---AGGT-ATAACGTA-TAATA-TT-ACGCT------AA-ACA--C--------C--------------TTCACACAGG-ACA-G-ACAATTCCACT--CTGAA-AAAA--GGA--G--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGACT-GT----GTACTCTGG-T-------GGT-TTCAAAAC----T-------ATAC--AAAT-A-ACA--C-AAATTGTGTA-TT---TA-ATA-C-A--TG--TCAAGGTTGT-TACT--A-A----AGATA-CA-TCATTTAAA-ATA--CAT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTATTTACTT-CATTTATAGTTTCAGTTTAT-GAAGA----GCA-T----A-C--TAA-ATTAC-ACT-TATATA-ACAAATATATGTGTTACTGTAC-AACTA--AGGGAGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AG-TTTCAAAG-ATTCA-A-ATAATTTCCA-TTTCTTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGCCAA-TTTGT-TTT-C-T--A---C-T-T-G-TA-AAAAGT-TAATCCA-GAAAATTTTCAATC-T-A---TTC---AATGATAGACAA-TTTCCTT---TACATTTTGCAAAATA--T-A-TG-AAAT---GTTTCAAATTTTGATTAATTTCA---T-AAG-TCGTTA-C-ATTTCACTTTC---------------------TGAACACC-AAGGATAAATGTTTTCTT-TCAGTTCTAAT-AC-TTGAATTGTAAAAATTC-ATCA--CAA---ACCAAGATAGCACA-TTCTTAAAATCTAATTACTAACTTTTTTCACAGTCATGCA-TAACATGTT--TAAATGACTCTTCTC---TCTCT-TTCTAAACA-GAAAGGGACATAGATCGTTATCTGATTTTCT-TAAT-ACGTTTTCAAA-AAAATGTTA-TTTGTAGATTAAAATTTTTGATGGTTTATTCGATACT-----------GTAAACCATTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACAT-TTTTATGAATACTTTTCAACTCTTTCTTGAGATGATTTCAAATTTATTATCCCATTTTTT
gi|10 : ACAGTCATGCA-TAATGTGTTC-T-AATGACCCCCCCCCCTTCTCTCTTCTAAAAATAAAAA---CATAGATCGTTGTCGTATAT--T-TAATCA--TTTTC--A-TAAA-GGTA-TTCGTAG-TTAAAATATT--ATGATTTATTCGATAC------------ACCAACCGATGTAATTTGCTATCTTTAGTATTC-TTAAAAAATATA-TTTATGAATT--CTTCCACTCTT
gi|11 : TG-AATT---AAAGTATGTA-ATATAATT---A-TTT-CTTT---ACTG--TTTGCACAATT-ATTTTCTTCCATG--AG-TTTTT-TTT-C-T--A---C-T-TTG-TA-TGCA-T-TATTCCA-GATAACTTTAAATT-A-A---TTC----ATGATAGACAA-GTTCCTT--TTACATTTTGTAAACTA--T-ATTG-AAAT---GTTTCAAA---TGA-TAAT
gi|12 : gttaTGGACT-GT----GTACTTTGG-CT----G-GGT-TTCAAAAA----T-------ATAC--AAAT-A-GCA--C-AA--------------------------TG--ACAAGGTTGT-TGCT--ACA----AGATA-CA-ACATTTAAACATA--CA--------------TAT-ACTACTGA-GTG-AT-TAAGGC-AT--TTAACACATTCTTGT--ACTT-TATTCA-AATTAAAG-TTAT-GAAGAGCTTGCATT----A-C--TAA-ATTAT-ACT-T-TATA-ACAAATACcatagttctaacctt
gi|13 : TATTCACATA-ATAAT--TAAT--AGTCA-GG----GTT----TTGGCA-TGCG-------CTT-A-CAAACCC--ACCTG-TCT---T--GGGGATA-CAGAGT-ATT--TTA-TCT-A-CC-ATTTACT---CAC-ACATGC--------A---------C----TCCA-ATGGG--------------CACT--------CAAA--GG---A--AGAGGGTTAAGAAA--G-A-GATAAA-A
gi|14 : aTTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA-GG----ATT----TTA-CA-TATGA----CCCTT-A-C-AACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATAA-GTA-TAA-A-TT-ACTCTCT---CAC-ACA--CACACATTAA---------A----TTCACACA-G-ACA-G-ACA--TTCACT--CTGAA-CAAA--GGA--A--AGAAG--TAA-AGG--A-A-Gtaccgtctggctaatcatctgttcaagatgatgtatac
gi|15 : CTCTTGT--ACTT-CATTT-TAATTTCAGTT-AT-GAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATG-ACAAATACATGTAT-A-TGTAC-AACTA--AGGGG--------AAAAACTTTTCA-AGATA--CTTATG-AAATCAT-GCTTG-AGTTTTCAAAG-ATTCA-A-ATAATT
gi|16 : A-TTTGTAG-TTAAAACTTT--AGGATTTATTCGATA-----------------ATCATTGTGAGTTGCTATGTTTTGTATTCATTAAAA--CATTTTTTATGAATTCCTCTCCACTTCTTCTTGAGAT-ATCTCAAATTGATCATCCCATGTTTT
gi|17 : GTAT-A-TGTAC-AACTA--AGGGGGAAAAAAACAA--CTTTTCA-AGATA--CTTCTG-AAATTAT-ACTTG-AGTTTTTAAAG-ATTCA-A-ATAATTTCCATTTT-TTTTCAAACTGA-TTTGTACAATT-ATT
gi|18 : A-TTTATTTTCAAACTGATTT-GCCTAATT-ATTTT--TCCTTG-CAGCTTCTT-TTT-C-T--A---CTT-T-G-TA-TGCA-T-TATTCCA-
gi|2 : agtttaagttatgaattaagagcatgcaatactacattTTTTTTT-TTTAC---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCACGG----A-T----TTA-CATGATGA----CCCTTGA-CAACCCAA-ACCTG-ACC---A--GGG---A-CAGGG--ATAA-GTG--AA-A-TC-ACTCTCTCTGCAC-ACA--C--------ACACACAC--A----TCCACACAGA-CCAGG-ACAG-TTCACT--CTGAA-CAAAAGGGA--A--AGAAG--AAA-AGG--A-A-GAAGAA-AGTTGGACT-GT----GTACTCTGG-CT----GCGGT-TTCAAAACG---TA------ACAC--AACTAA-ACA--CAAAAT-GTGTA-TT---CA-ATACC-AATTG--GCAAGTATG--TACTAAA-A----AGATACCA-T-ATTTAAACATAC-CAT--ACA---GTACATAT-GCTGCTGACGTG-GTCTAAGACAAG--TTAACTCACTCTTGT--ACTT-CATCTATAGCTT-AGCTTAT-GAAGA----GCA-T----ACC--TAA-ATTACAACT-T-TATACACAAATATATGTGTCA-TGTACAAACTA--A-GGGGAGACAAAAAAAACTCTTTC-AAGTA--CTTATGAAAATTAT-ACTTG-AG-TTTCAAAC-ACTCACA-ATAA-CTCCA--TT-CTTTCAAACTGATCTTGTACAATTCA--TT--TCCATG-CAA--TTGT-TTT-C-CTGA---CTT-T-GTTA-AACA-TCTAATCCAGGAAAATTGTAAATCAT-AACTTCC---AA--ATAGACCATTTTCCT----TACATTTTGTAAAAAA--TCA-TGCAAAT---GTTTCAA----TGA-TAATTT-T---A-AAGTT--TTACC-ATTTCACTTTCAACACGACACCCCGCCATTTCTGAACACC-CAAGCAAAATGTTTTCTTATCAGTCATAA-ATA-TTGAACAGCTAAAATTAGGTCA--CGCAAAACCAAGATTGC-CATTTCTTAAAA---AGATACTAAACTTTTTCACAGTCATGCATTAATATGTTCCT-AATGACTC--------TCTCTCTTCTTAACAGGAAAGAACCATAGATCATTATCTGATTTCTTGTAAT----TTGGC--ACAAAATGCTACTTTGTAG-TTTAA
gi|20 : attCTG-ACC---A--GGGG-TA-CAGGGT-TTGA-GTA-TAA-G-TT-ACTCTCT---CAC-ACA--C--------AC--------A----TTCACACA-G-ATA-G-GCA--TTCACT--ATGAA-CGAA--GGA--T--AGAAG--TAA-AAG--G-AGGAAGAA-AGTg
gi|21 : T-TAAT-AA-TTTTC--A-AAAATG-TA-TTTGTAG-TTCATATTTT--ATGGTTTATTCGATACTGTTTAATTTACACTAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAA
gi|22 : TTTTGTAAAATA--T-A-TG-AAAT---ATTTCAAA--T-GAT-AATTT-A---TGAAG-T--TTA-CCATTTCAATTTC---------------------TGAACACTTAAAGATAAAAGTTTTCTTATCAGTTATAATA
gi|23 : TGT--ACTT-CATTTCTGGTTTAAG-TTAG-GAGGA----GCA------A-CAACAA-AATAT-ACT-A-AACA-ACAAATACATGTAT-A-TGTAC-AACTAATATAAGGAAGAAAtt
gi|24 : tgTT-A---AGTTT----ACACC-ATTTATTCCGGGT-ATA-T--C--CC-AGACA-GG----ATT----TTA-CA-TAAAA----CCCTC-A-CAA-CCCA-ACCTG-ACCATTA--GTGGATA-CAGGGt
gi|25 : TCA-AG----ATT----TTA--A-CGTG-----CCCTT-A-CAAACT---GTCTG-ACA---A--GGGGGTA-CA
gi|26 : aatattgcacatacaataT-TCC-C---AGTTT----ACAAC-ATTTATTCAG-------------------------------T----TTA-CA-TACGA----CCCTT-A-CAA-CCCA-ACCTG-AAC---A--GGGGGTA-CAAGGT-ATGA-ATA-caggtttgttttttatctaccattta
gi|27 : ACAATT-ATTTT--TCCATG-CAC-TTTGT-TTT-TAT--A---C-TCT-G-TA-TGCA-T-TAGTCCA-GATAATTTTAAATC-T-A---TTC---A
gi|28 : TTTGTACAATT-ATTTT--TCTATA-TAG-TCTGTGTTT-C-T--ATACT-T-T-G-TA-TACA-T-TAGTCCA-GA
gi|29 : aTTTTTT-TTT-T---AGTTT----ACAAG-ATTTATTCAGGTT-ATA-T--T--T--AGTCA-GG----ATT----Ta
gi|3 : TTTTTTTATTTAC---AGTTTCT--ACAACCATCTTTTCAGGTTTATA-T--T--T--AGTCA-GG----ATTG---TTAACA-TATGA----CCCTT-AGCAAAGCCC-ACCTGGACC---AC-GGAGGTA-CAGG-T-ATAA-GTG-TAA-AATT-ACTCTCT---CAC-A-------------A---------A----TCCACACAG--ACA-G-TCA--TTCA-T--CTGAAACAAA--GGA--A--AGAAG--TAA-AAG--G-AAGAAGAA-GTTCGGACTTGT----GTA-TCTGG-CT----G-GGT-T-CAAAAC----T-------A-A---AAAT-A-ACA--C-AAAT-GTGTA-TA---TGTATA-C-AA-TG--TCAAGGTTGT-TACT--A-A----AGATA-CA-T-ATTAAAACATAGCCAT--ACATGTGTACCTATCGCTGCTGA--TGAGT-TTAGAC-AAGTTTAAC-CACTCTTGT--ACTT-CATT-ATAGCTATAGGTTATTGAAGA----G-A-T----A-C--TAA-ATTA--ACTGT-TATA-ACAAATATATGTGT-A-TGTAC-AACTA--GGGAGG--AAAAAAAAAACTTTTTC-AGATAGCCCTATG-AAA-TATAACTTGAAGTTTTCAAAG-ACTCA-A-AT-ATTTCCA-
gi|30 : aatt--GGGGGTA-CAGGGT-TTGA-GTA-TAA-A-TT-ACTCTCT---CAC-ACA--C--------A---------
gi|31 : TA--CATGTACA----TACATAT-ACTACTGA-GTG-GT-TAAGAC-AG--TTcactc
gi|4 : TTTTTC-CTT-C---AGTAT----ACAAC-ATTTATTCA--TT-ATA-T--C--T--AGT---AG----ATT----TAA-CA-TAATA----CCCTT-A-CAA--TCA-ACC---ACC---A--GGTG-TA-CAGGATTGGGA-GTA-TTA-A-AT-ACTCTCT---CATTACA--C--------A---------C----TTCACACAGG-AC--G-ACA--TTCACT--CTGAA-CAAA--CGA--T--AGAAG--TAA-AGGATG-A-GGAAAA-AGTT--ACT-GT----GTACTCCGG-CT----C-GGTCTTCAAAAC----T-------A-----AAAA-A-ACA--A-AAAT----TAGTT---TA-ATA-CAA--TG--TCAG---TGTATACT--A-A----A-ATA-CA-TCATTCAAACAT-----------------CATAT-ACTAC-GA-GT--GT-TAA-ACAAG--TT-ACACA--CTTGT--GCTTAAATTCATTCTATCAGTTATT-GAAG-----GCA-TGCAAA-C--TAAGATAAC-ACT-T--------AAACA-------------GC-AACTA--AGGAGAAAAAAAAA--------TTCAAGATA--C-TAC--AAATAGT-AC-TG-AGTTTTCAAAG-ATTCA-A-A
gi|5 : aTTTTTT-TTT-GTAAAGTTTCACAACAGC-ATTTATTTAAATT-ATA-TACT--TGGAGTCA-AGTGAGATTCATATAA-TA-ATTAAAGTCTCTTT-A-CAAACCCA-CTCTG-ACC---AAGAGGGGTAGCAGGGT-TTGAGGTATTAA-A-TTAACTCTCT---AAC-ACA--C--------A---------GCAACTTCACAAAAGTACA-GTACA--TCAGCTCACTGAA-CAAA--GGAATA--AGAAG--TAA-AAG--G-ACGAAGAAGAGTCGGACT-GTGGCAGCAATCCGGACTATGGA-GGT-TTCAAAAA----T-------ATAC--CATT-ATAGA--C---------TA-CTCCATA-GTA-C-A--TGGTTCAA--CTGT-TGC---A-ATTCCAGGTA-CACTCAattc
gi|6 : -ACTTG-AGTTTTCAATG-TTTCA-A-ATAATTTCCA-TCT-TT--------------ATATACTT-GTTTT--CCC-TG-CAG-TTTGT-TTTTC-T--A---C-T-TTG-TA-TACA-A-TAATCCA-GATAACTTTAAATT-T-A---TTC---AATGATAGACAA-TTTCCTAAAATACATTTTGTAAAGTACCT-A-T--ATAT---GTCTCAAG---TGA-TAATTA-AC--T-AAG-T--TTA------TCATTT-----------------------------CC-AAGGAGAAAAGTTTTCTTTTCAATTATAACAACATCAAA-TGCAAAAGTT---TCATTC-----ACCATTATTGCACA-TCCTTAA----------------TTTTTCAT--TCAAGCA-TAATGTGaaaatgtat
gi|7 : TTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA-GG----ATT----TTA-CA-TATGA----CCCTT-A-C-AACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATAA-GTA-TAA-A-TT-ACTCTCT---CAC-ACA--C--------ACAC------A----TTCACACA-G-ACA-G-ACA--TTCACT--CTGAA-CAAA--GGA--A--AGAAG--TAA-AAG--GAA-GAAGAA-AGTTGGACT-GT----GTACTCTGG-CT----G-GGT-TTCAAAACGAAAT-------ATATCGAAAC-A-AAA--C-AAAattt
gi|8 : TTTATATACTT-GTTTT--CCC-TG-CAG-TTTGT-TTTTC-T--A---C-T-T-G-TGTAACA---AAATCCA--ATAACTTTAATTT-TAA---TTCATGAATGAT---CAA-TTTCCTAAAATACATTTTGTAAAGTA--C-C-TG-ATATATAGTCTCAAG---TGA-TAATTT-AACTC-AAG-T--TTA------TCATTT-----------------------------CC-AAGGA-AAAAGTTTTCT--TCAATT-TAACAACATCAAA-T-CAAAGTT----TCATTC-----ACCATTATTGCACA-TCCTTAacggaacattttacaaccaaactttttca
gi|9 : CA-ACCTG-ATC---A--GAAGGTA------T-TTAG-GTA-T-----TT--CTCTTT---CAC-ACA--C--------ACACACACACA----TTCACAT-GG-ACA-G-ACA--CTCATT--CTGAG-CAAA----A--ATTAGAAG--TAA-AAG--G-AGGAAGAA-AGTTGGACT-AC----ACAGTCTGG-CT----A-GGT-TTTAAAAA----TATCATGAATAC--AAAT-A-TCAATC-AGAT-GTGTG-TT---GC-A-----A--TG--CCAAGGCTGT-TACTA-A-A----AGAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATCTACCATTTACTCACACATGCACTCCAATAGGCACTCAAAGGAAGAGGGTTAAGAAAGGGATAAAATACCGTCTGCATGCTAATCATCTGTTCAAGATGATGTATACA
Alignments
lowQualScore : 11111 1111 11111111 1111 11111111111 111111111 1111111111 2222222222 1 1111 111111 222222222222 333333333333333 11 1 11 2222 1 1 1111 111111 111 1 11 1 11111 1 111 111 3333 111111 111 111 3333333 11 22222 88888888888888888888888888888 1 11111 55555555555555 1 66666666666666 1 1 1 222222222 444 1111 3333 1 11111 11 6666666666666666 1 1 1 1
lowQualScore : 4 11111 4444 4 3 3 22222222 0000 3 7 3 77777777777 3 3 4 4 3 3 555 66 1 2 44 0 6 3 3 3 3 999999999 3 3 4444444444 0000000000 4 4 99 55 4 55 88888 55 4 55 8 2 4 5 0000 2 5 555555 5 777777777777 5 888 5 77 5 99 000000000000000 1 1 6 55 6 8 0 55 99 2222 6 6 6 6 3 99 0 6 1 77 5 1 6 0 1 5 2222 555555 5 77 5 77 7777 5 4 0 111 5 77 0 1 3 6 99 1 6 5 5 0 5 5 5 5 3 2 00 0 4 66 6 5 5 5 0 5 66 00000 5 0 5 5 777 1 5 6 888 111 0 0 8 5555 111111 6 111 111 6 3333333 8 11 77777 1 11111111111111111111111111111 8 8 1 5 5 22 3 3 88888 22222222222222 22 3 0 22222222222222 3 3 0 3 999999999 6 0 333 6666 7777 0 77777 8 8 1 33 4444444444444444 0 7 3 2 5 1 1
lowQualScore : . ..... .... . . . ........ .... . . . ........... . . . . . . ... .. . . .. . . . . . . ......... . . .......... .......... . . .. .. . .. ..... .. . .. . . . . .... . . ...... . ............ . ... . .. . .. ............... . . . .. . . . .. .. .... . . . . . .. . . . .. . . . . . . .... ...... . .. . .. .... . . . ... . .. . . . . .. . . . . . . . . . . . .. . . .. . . . . . . .. ..... . . . . ... . . . ... ... . . . .... ...... . ... ... . ....... . .. ..... . ............................. . . . . . .. . . ..... .............. .. . . .............. . . . . ......... . . ... .... .... . ..... . . . .. ................ . . . . . . .
lowQualScore : 4 66666 0000 0 6 6 77777777 4444 3 3 6 33333333333 6 6 4 3 3 1 444 88 2 9 22 1 7 3 6 6 6 555555555 6 6 5555555555 2222222222 0 0 55 55 0 55 77777 55 0 55 0 0 4 0 6666 5 0 999999 0 999999999999 1 222 7 99 7 22 333333333333333 8 8 7 88 7 0 0 88 22 5555 7 7 7 7 3 22 8 0 0 99 7 4 6 6 7 7 1111 999999 7 99 7 44 9999 7 0 4 666 7 99 7 4 2 7 22 7 7 7 0 1 0 0 0 7 3 5 33 1 4 99 5 0 0 0 0 0 99 88888 0 0 0 0 555 2 0 7 333 777 8 8 0 4444 000000 7 777 777 7 4444444 0 00 88888 4 00000000000000000000000000000 0 8 4 8 6 22 2 2 00000 55555555555555 00 2 0 33333333333333 3 2 0 3 333333333 7 7 777 7777 0000 0 88888 0 0 0 88 8888888888888888 0 3 3 0 0 0 0
consensus : TTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-CAAACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATGA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-C-------A--TTCACACA-------GG-ACA-G-ACA--TTCACT--CTGAA-CAAA--GGA--A--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAAC----T-------ATAC--AAAT-AACA--C-AAAT-GTGTA-TTTA-ATA-C-A--TGNCAAGGTTGT-TACT--A-AAGATA-CATCATTTAAACATA--CAT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTGT--ACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATA-ACAAATACATGTGT-A-TGTAC-AACTA--AGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTTTCAAAG-ATTCA-A-ATAATTTCCA-TTT-TTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGC-AG-TTTGT-TTT-C-T--A---C-T-T-G-TATA-CA-T-TAATCCA-GATAACTTTAAATC-TA---TTCA---ATGATAGACAA-TTTCCTNAAATACATTTTGTAAAATA--T-A-TG-AAAT---GTTTCAAAT---GAT-AATTT-A---T-AAG-T--TTACCATTTCACTTTC---------------------TGAACAC-CAAGGANAAAAGTTTTCTTATCAGTTATAACAACATCGAATCGCAAAAGTT--GTCATTC--AA-CCANNATTGCACA-TCCTTAAAA----A--TACT-AACTTTTT-CACAGTCATGCA-TAATGTGTT-CTAATGACTCCCCCC---TCTCTCTTCTAAACAGAAAAGGA-CATAGATCGTTATCTGATTTCCT-TAAT-A--TTTTCA-AAAA--TGNTA-TTTGTAG-TTAAAATTTT--ATGGTTTATTCGATACT-----------ACNAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATTCCTTTCCACTCTTTCTTGAGATGATCTCAAATTNATCATCCCATNTTTT
Reference ( family-3908 ) : TTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-CAAACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATGA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-C-------A--TTCACACA-------GG-ACA-G-ACA--TTCACT--CTGAA-CAAA--GGA--A--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAAC----T-------ATAC--AAAT-AACA--C-AAAT-GTGTA-TTTA-ATA-C-A--TGTCAAGGTTGT-TACT--A-AAGATA-CATCATTTAAACATA--CAT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTGT--ACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATA-ACAAATACATGTGT-A-TGTAC-AACTA--AGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTTTCAAAG-ATTCA-A-ATAATTTCCA-TTT-TTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGC-AG-TTTGT-TTT-C-T--A---C-T-T-G-TATA-CA-T-TAATCCA-GATAACTTTAAATC-TA---TTCA---ATGATAGACAA-TTTCCTNAAATACATTTTGTAAAATA--T-A-TG-AAAT---GTTTCAAAT---GAT-AATTT-A---T-AAG-T--TTA-CATTTCACTTTC---------------------TGAACAC-CAAGGANAAAAGTTTTCTTATCAGTTATAACAACATCGAACTGCAAAAATT--GTCATTC--GA-CCANNATTGCACA-TCCTTAAAA----AG-TACT-AACTTTTT-CACAGTCATGCA-TAATGTGTT-CTAATGACTCCCCCC---TCTCTCTTCTAAACAGAAAGGG--CATAGATCGTTATCTGATTTCCT-TAAT-A--TTTTCA-AAAA--TGNTA-TTTGTAG-TTAAAATTTT--ATGGTTTATTCGATACT-----------ACNAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATTCCTTTCCACTCTTTCTTGAGATGATCTCAAATTNATCATCCCATNTTTT
gi|1 : TTTTTCT-TTT-C---AGTTT----ACCAC-ATTTATTCAGGTT-ATA-T--T--TC-AGTCA----GGATT-TTA-CAA-TTGA-----------CCCTT-A-CA--CCCAGACCT--ACC---A--GGGGGTA---AGGT-ATAACGTA-TAATA-TT-ACGCT---------------AAACA-C-------C--TTCACACA-------GG-ACA-G-ACAATTCCACT--CTGAA-AAAA--GGA--G--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-T-------GGT-TTCAAAAC----T-------ATAC--AAAT-AACA--C-AAATTGTGTA-TTTA-ATA-C-A--TGTCAAGGTTGT-TACT--A-AAGATA-CATCATTTAAA-ATA--CAT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTATTTACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-TATATA-ACAAATATATGTGTTACTGTAC-AACTA--AGGGAGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTT-CAAAG-ATTCA-A-ATAATTTCCA-TTTCTTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGCCAA-TTTGT-TTT-C-T--A---C-T-T-G-TAAA-AAGT-TAATCCA-GAAAATTTTCAATC-TA---TTCA---ATGATAGACAA-TTTCCTT---TACATTTTGCAAAATA--T-A-TG-AAAT---GTTTCAAATTTTGATTAATTTCA---T-AAG-TCGTTA-CATTTCACTTTC---------------------TGAACAC-CAAGGATAAATGTTTTCTT-TCAGTTCTAATA-C-TTGAATTGTAAAAATTC-ATCA--C--AAACCAAGATAGCACA-TTCTTAAAATCTAAT-TACT-AACTTTTTTCACAGTCATGCA-TAACATGTT-TAAATGACTCTTCTC---TCTCT-TTCTAAACAGAAAGGGA-CATAGATCGTTATCTGATTTTCT-TAAT-ACGTTTTCA-AAAAAATGTTA-TTTGTAGATTAAAATTTTTGATGGTTTATTCGATACT-----------GTAAACCATTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATACTTTTCAACTCTTTCTTGAGATGATTTCAAATTTATTATCCCATTTTTT
gi|10 : ACAGTCATGCA-TAATGTGTT-CTAATGACCCCCCCCCCTTCTCTCTTCTAAAAATAAAAA---CATAGATCGTTGTCGTATAT--T-TAATCA--TTTTCA-TAAA---GGTA-TTCGTAG-TTAAAATATT--ATGATTTATTCGATAC------------ACCAACCGATGTAATTTGCTATCTTTAGTATTC-TTAAAAAATATATTT-ATGAATTC--TTCCACTCTT
gi|11 : TG-AATT---AAAGTATGTA-ATATAATT---A-TTT-CTTT---ACTG--TTTGCACAATT-ATTTTCTTCCATG--AG-TTTTT-TTT-C-T--A---C-T-TTG-TATG-CA-T-TATTCCA-GATAACTTTAAATT-AA---TTC----ATGATAGACAA-GTTCCTT--TTACATTTTGTAAACTA--T-ATTG-AAAT---GTTTCAAAT---GAT-AAT
gi|12 : gttaTGGAC-TGT----GTACTTTGG-CT----G-GGT-TTCAAAAA----T-------ATAC--AAAT-AGCA--C-AA-----------------------TGACAAGGTTGT-TGCT--ACAAGATA-CAACATTTAAACATA--CAT--ATA-------------CTACTGA-GTG-AT-TAAGGC-AT--TTAACACATTCTTGT--ACTT-TATTCA-AATTAAAG-TTA-TGAAGAGCTTGCATT----A-C--TAA-ATTAT-ACT-T-TATA-ACAAATACcatagttctaacctt
gi|13 : TATTCACATA-ATAAT--TAAT--AGTCA----GGGTT-TTGGCAT-GCG--------------CTT-A-CAAACCC--ACCTG-TCT---T--GGGGATA-CAGAGT-ATT--TTA-TCT-A-CC-ATTTACT---------CAC-ACATG-C-------A--CTCCAATG-------GG--------------CACT--------CAAA--GG---A--AGAGGGTTAAGAAA--G-A-GATAAA-A
gi|14 : aTTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-C-AACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATAA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-CACATTAAA--TTCACACA--------G-ACA-G-ACA--TTCACT--CTGAA-CAAA--GGA--A--AGAAG--TAA-AGG--A-A-Gtaccgtctggctaatcatctgttcaagatgatgtatac
gi|15 : CTCTTGT--ACTT-CATTT-TAATTTCAGTT-A-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATG-ACAAATACATGTAT-A-TGTAC-AACTA--AGGGG--------AAAAACTTTTCA-AGATA--CTTATG-AAATCAT-GCTTG-AGTTTTCAAAG-ATTCA-A-ATAATT
gi|16 : A-TTTGTAG-TTAAAACTTT--AGGATTTATTCGATA-----------------ATCATTGTGAGTTGCTATGTTTTGTATTCATTAAAA--CATTTTTTATGAATTCCTCTCCACTTCTTCTTGAGAT-ATCTCAAATTGATCATCCCATGTTTT
gi|17 : GTAT-A-TGTAC-AACTA--AGGGGGAAAAAAACAA--CTTTTCA-AGATA--CTTCTG-AAATTAT-ACTTG-AGTTTTTAAAG-ATTCA-A-ATAATTTCCATTTT-TTTTCAAACTGA-TTTGTACAATT-ATT
gi|18 : A-TTTATTTTCAAACTGATTT-GCCTAATT-ATTTT--TCCTTGC-AGCTTCTT-TTT-C-T--A---CTT-T-G-TATG-CA-T-TATTCCA-
gi|2 : agtttaagttatgaattaagagcatgcaatactacattTTTTTTT-TTTAC---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCAC---GGA-T-TTA-CATGATGA-----------CCCTTGA-CAACCCAA-ACCTG-ACC---A--GGG---A-CAGGG--ATAA-GTG--AA-A-TC-ACTCTCTCTGCACACACAC-ACACA-C-------A--TCCACACA-------GA-CCAGG-ACAG-TTCACT--CTGAA-CAAAAGGGA--A--AGAAG--AAA-AGG--A-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----GCGGT-TTCAAAACG---TA------ACAC--AACTAAACA--CAAAAT-GTGTA-TTCA-ATACC-AATTGGCAAGTATG--TACTAAA-AAGATACCAT-ATTTAAACATAC-CAT--ACA---GTACATAT-GCTGCTGACGTG-GTCTAAGACAAG--TTAACTCACTCTTGT--ACTT-CATCTATAGCTT-AGCTTA-TGAAGA----GCA-T----ACC--TAA-ATTACAACT-T-TATACACAAATATATGTGTCA-TGTACAAACTA--A-GGGGAGACAAAAAAAACTCTTTC-AAGTA--CTTATGAAAATTAT-ACTTG-AG-TTTCAAAC-ACTCACA-ATAA-CTCCA--TT-CTTTCAAACTGATCTTGTACAATTCA--TT--TCCATGC-AA--TTGT-TTT-C-CTGA---CTT-T-GTTAAA-CA-TCTAATCCAGGAAAATTGTAAATCATAACTTCCA---A--ATAGACCATTTTCCT----TACATTTTGTAAAAAA--TCA-TGCAAAT---GTTTC-AAT---GAT-AATTT-T---A-AAGTT--TTACCATTTCACTTTCAACACGACACCCCGCCATTTCTGAACAC-CCAAGCAAAATGTTTTCTTATCAGTCATA--AATATTGAACAGCTAAAATTAGGTCACGCAAAA-CCAAGATTGC-CATTTCTTAAAA----AGATACTAAACTTTTT-CACAGTCATGCATTAATATGTTCCTAATGACT-----C---TCTCTCTTCTTAACAGGAAAGAACCATAGATCATTATCTGATTTCTTGTAAT----TTGGCACAAAA--TGCTACTTTGTAG-TTTAA
gi|20 : attCTG-ACC---A--GGGG-TA-CAGGGT-TTGA-GTA-TAA-G-TT-ACTCTCT---------CAC-ACACA-C-------A--TTCACACA--------G-ATA-G-GCA--TTCACT--ATGAA-CGAA--GGA--T--AGAAG--TAA-AAG--G-AGGAAGAA-AGTg
gi|21 : T-TAAT-AA-TTTTCA-AAAA--TG-TA-TTTGTAG-TTCATATTTT--ATGGTTTATTCGATACTGTTTAATTTACACTAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAA
gi|22 : TTTTGTAAAATA--T-A-TG-AAAT---ATTTCAAAT---GAT-AATTT-A---TGAAG-T--TTACCATTTCAATTTC---------------------TGAACACTTAAAGATAAAAGTTTTCTTATCAGTTATAATA
gi|23 : TGT--ACTT-CATTTCTGGTTTAAG-TTA-GGAGGA----GCA------A-CAACAA-AATAT-ACT-A-AACA-ACAAATACATGTAT-A-TGTAC-AACTAATATAAGGAAGAAAtt
gi|24 : tgTT-A---AGTTT----ACACC-ATTTATTCCGGGT-ATA-T--C--CC-AGACA----GGATT-TTA-CAT-AAAA-----------CCCTC-A-C-AACCCA-ACCTG-ACCATTA--GTGGATA-CAGGGt
gi|25 : TCA----AGATT-TTA--AC-GTG------------CCCTT-A-CAAACT---GTCTG-ACA---A--GGGGGTA-CA
gi|26 : aatattgcacatacaataT-TCC-C---AGTTT----ACAAC-ATTTATTCAG------------------------------T-TTA-CAT-ACGA-----------CCCTT-A-CAA-CCCA-ACCTG-AAC---A--GGGGGTA-CAAGGT-ATGA-ATA-caggtttgttttttatctaccattta
gi|27 : ACAATT-ATTTT--TCCATGC-AC-TTTGT-TTT-TAT--A---C-TCT-G-TATG-CA-T-TAGTCCA-GATAATTTTAAATC-TA---TTCA---
gi|28 : TTTGTACAATT-ATTTT--TCTATAT-AG-TCTGTGTTT-C-T--ATACT-T-T-G-TATA-CA-T-TAGTCCA-GA
gi|29 : aTTTTTT-TTT-T---AGTTT----ACAAG-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-Ta
gi|3 : TTTTTTTATTTAC---AGTTTCT--ACAACCATCTTTTCAGGTTTATA-T--T--T--AGTCA----GGATTGTTAACAT-ATGA-----------CCCTT-AGCAAAGCCC-ACCTGGACC---AC-GGAGGTA-CAGG-T-ATAA-GTG-TAA-AATT-ACTCTCT---------CAC-A---A---------A--TCCACACA-------G--ACA-G-TCA--TTCA-T--CTGAAACAAA--GGA--A--AGAAG--TAA-AAG--GAA-GAAGAA-GTTCGGACTTGT----GTA-TCTGG-CT----G-GG--TTCAAAAC----T-------A-A---AAAT-AACA--C-AAAT-GTGTA-TATGTATA-CAA--TGTCAAGGTTGT-TACT--A-AAGATA-CAT-ATTAAAACATAGCCAT--ACATGTGTACCTATCGCTGCTGA--TGAGT-TTAGAC-AAGTTTAAC-CACTCTTGT--ACTT-CA-TTATAGCTATAGGTTATTGAAGA----G-A-T----A-C--TAA-ATTA--ACTGT-TATA-ACAAATATATGTGT-A-TGTAC-AACTA--GGGAGG--AAAAAAAAAACTTTTTC-AGATAGCCCTATG-AAA-TATAACTTGAAGTTTTCAAAG-ACTCA-A-AT-ATTTCCA-
gi|30 : aatt--GGGGGTA-CAGGGT-TTGA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-C-------A--CTC
gi|31 : TA--CATGTACA----TACATAT-ACTACTGA-GTG-GT-TAAGAC-AG--TT
gi|4 : TTTTTC-CTT-C---AGTAT----ACAAC-ATTTATTCA--TT-ATA-T--C--T--AGT------AGATT-TAA-CAT-AATA-----------CCCTT-A-CAA--TCA-ACC---ACC---A--GGTG-TA-CAGGATTGGGA-GTA-TTA-A-AT-ACTCTCT---------CATTACACA-C----------TTCACACA-------GG-AC--G-ACA--TTCACT--CTGAA-CAAA--CGA--T--AGAAG--TAA-AGGATG-A-GGAAAA-AGTT--AC-TGT----GTACTCCGG-CT----C-GGTCTTCAAAAC----T-------A-----AAAA-AACA--A-AAAT----TAGTTTA-ATA-CAA--TGTCAG---TGTATACT--A-AA-ATA-CATCATTCAAACAT-----------------CATAT-ACTAC-GA-GT--GT-TAA-ACAAG--TT-ACACA--CTTGT--GCTTAAATTCATTCTATCAGTTAT-TGAAG-----GCA-TGCAAA-C--TAAGATAAC-ACT-T--------AAACA-------------GC-AACTA--AGGAGAAAAAAAAA--------TTCAAGATA--C-TAC--AAATAGT-AC-TG-AGTTTTCAAAG-ATTCA-A-A
gi|5 : aTTTTTT-TTT-GTAAAGTTTCACAACAGC-ATTTATTTAAATT-ATA-TACT--TGGAGTCAAGTGAGATT-----CAT-ATAATAATTAAAGTCTCTTT-A-CAAACCCA-CTCTG-ACC---AAGAGGGGTAGCAGGGT-TTGAGGTATTAA-A-TTAACTCTCT---------AAC-ACACAGC-------AACTTCACAAA-------AGTACA-GTACA--TCAGCTCACTGAA-CAAA--GGAATA--AGAAG--TAA-AAG--G-ACGAAGAAGAGTCGGAC-TGTGGCAGCAATCCGGACTATGGA-GGT-TTCAAAAA----T-------ATAC--attc
gi|6 : -ACTTG-AGTTTTCAATG-TTTCA-A-ATAATTTCCA-TCT-TT--------------ATATACTT-GTTTT--CCC-TGC-AG-TTTGT-TTTTC-T--A---C-T-TTG-TATA-CA-A-TAATCCA-GATAACTTTAAATT-TA---TTCA---ATGATAGACAA-TTTCCTAAAATACATTTTGTAAAGTACCT-A-T--ATAT---GTCTCAAGT---GAT-AATTA-AC--T-AAG-T--TTA-----TCATTT-----------------------------C-CAAGGAGAAAAGTTTTCTTTTCAATTATAACAACATCAAA-TGCAAAAGTT---TCATTC---A-CCATTATTGCACA-TCCTTAA-----------------TTTTT-CAT--TCAAGCA-TAATGTGcattatagactactccatagtacatggttcaactgttgcaattccaggtacactcaaaaatgtat
gi|7 : TTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-C-AACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATAA-GTA-TAA-A-TT-ACTCTCTCA-------CAC-ACACA-C-------A--TTCACACA--------G-ACA-G-ACA--TTCACT--CTGAA-CAAA--GGA--A--AGAAG--TAA-AAG--GAA-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAACGAAAT-------ATATCGAAAC-AAAA--C-AAAattt
gi|8 : TTTATATACTT-GTTTT--CCC-TGC-AG-TTTGT-TTTTC-T--A---C-T-T-G-TGTAACA-A--AATCCA--ATAACTTTAATTT-TAA--TTCATGAATGAT---CAA-TTTCCTAAAATACATTTTGTAAAGTA--C-C-TG-ATATATAGTCTCAAGT---GAT-AATTT-AACTC-AAG-T--TTA-----TCATTT-----------------------------C-CAAGGA-AAAAGTTTTCTT--CAATT-TAACAACATCAAATC---AAAGTT---TCATTC---A-CCATTATTGCACA-TCCTTAacggaacattttacaaccaaactttttca
gi|9 : CA-ACCTG-ATC---A--GAAGGTA------T-TTAG-GTA-T-----TT--CTCTTT---------CAC-ACACA-C-------A--CACACACATTCACATGG-ACA-G-ACA--CTCATT--CTGAG-CAAA----A--ATTAGAAG--TAA-AAG--G-AGGAAGAA-AGTTGGAC-TAC----ACAGTCTGG-CT----A-GGT-TTTAAAAA----TATCATGAATAC--AAAT-ATCAATC-AGAT-GTGTG-TTGC-A-----A--TGCCAAGGCTGT-TACTA-A-AAGAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATCTACCATTTACTCACACATGCACTCCAATAGGCACTCAAAGGAAGAGGGTTAAGAAAGGGATAAAATACCGTCTGCATGCTAATCATCTGTTCAAGATGATGTATACA
Alignments
lowQualScore : 11111 1111 11111111 1111 11111111111 111111111 1111111111 22222222 1 1111 111111 222222222222 333333333333333 11 1 11 2222 1 1 1111 111111 111 1 11 1 11111 1 111 111 3333 111111 111 111 3333333 11 99999999999999999999999999999999999 1 1111 44444444444444 1 7777777777777 1 1 1 222222222 1111 1111 3333 1 11111 11 6666666666666666 1 1 1 1
lowQualScore : 4 11111 4444 4 3 3 22222222 0000 3 7 3 77777777777 3 3 4 4 3 3 555 66 1 2 44 0 6 3 3 3 3 999999999 3 3 4444444444 44444444 4 4 4 99 55 4 55 88888 55 4 55 8 2 4 5 0000 2 5 555555 5 777777777777 5 888 5 77 5 99 000000000000000 1 1 6 55 6 8 0 55 99 2222 6 6 6 6 3 99 0 6 1 77 5 1 6 0 1 5 2222 555555 5 77 5 77 7777 5 4 0 111 5 77 0 1 3 6 99 1 6 5 5 0 5 5 5 5 3 2 00 0 4 66 6 5 5 5 0 5 66 00000 5 0 5 5 777 1 5 6 888 111 0 0 8 5555 111111 6 111 111 6 3333333 8 11 55555555555555555555555555555555555 8 1 5 5 22 3 3 9999 55555555555555 22 3 0 4444444444444 3 3 0 3 999999999 6 4444 6666 7777 0 77777 8 8 1 33 4444444444444444 0 7 3 2 5 1 1
lowQualScore : . ..... .... . . . ........ .... . . . ........... . . . . . . ... .. . . .. . . . . . . ......... . . .......... ........ . . . .. .. . .. ..... .. . .. . . . . .... . . ...... . ............ . ... . .. . .. ............... . . . .. . . . .. .. .... . . . . . .. . . . .. . . . . . . .... ...... . .. . .. .... . . . ... . .. . . . . .. . . . . . . . . . . . .. . . .. . . . . . . .. ..... . . . . ... . . . ... ... . . . .... ...... . ... ... . ....... . .. ................................... . . . . .. . . .... .............. .. . . ............. . . . . ......... . .... .... .... . ..... . . . .. ................ . . . . . . .
lowQualScore : 4 66666 0000 0 6 6 77777777 4444 3 3 6 33333333333 6 6 4 3 3 1 444 88 2 9 22 1 7 3 6 6 6 555555555 6 6 5555555555 66666666 0 0 0 55 55 0 55 77777 55 0 55 0 0 4 0 6666 5 0 999999 0 999999999999 1 222 7 99 7 22 333333333333333 0 8 7 88 7 0 0 88 22 5555 7 7 7 7 3 22 8 0 0 99 7 4 6 6 7 7 1111 999999 7 99 7 44 9999 7 0 4 666 7 99 7 4 2 7 22 7 7 7 0 1 0 0 0 7 3 5 33 1 4 99 5 0 0 0 0 0 99 88888 0 0 0 0 555 2 0 7 333 777 8 8 0 4444 000000 7 777 777 7 4444444 0 00 88888888888888888888888888888888888 8 4 8 6 22 2 2 0000 00000000000000 00 2 0 0000000000000 3 2 0 3 333333333 7 7777 7777 0000 0 88888 0 0 0 88 8888888888888888 0 3 3 0 0 0 0
consensus : TTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-CAAACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATGA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-C-------A--TTCACACA-------GG-ACA-G-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAAC----T-------ATAC--AAAT-AACA--C-AAAT-GTGTA-TTTA-ATA-C-A--TGNCAAGGTTGT-TACT--A-AAGATA-CATCATTTAAACATA--CAT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTGT--ACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATA-ACAAATACATGTGT-A-TGTAC-AACTA--AGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTTTCAAAG-ATTCA-A-ATAATTTCCA-TTT-TTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGC-AG-TTTGT-TTT-C-T--A---C-T-T-G-TATA-CA-T-TAATCCA-GATAACTTTAAATC-TA---TTCA---ATGATAGACAA-TTTCCTNAAATACATTTTGTAAAATA--T-A-TG-AAAT---GTTTCAAAT---GAT-AATTT-A---T-AAG-T--TTACCATTTCACTTTC---------------------TGAACAC-CAAGGANAAAAGTTTTCTTATCAGTTATAACAACATCGAATCGCAAAAGTT--GTCATTC--AA-CCANNATTGCACA-TCCTTAAAA----AT-ACT-AACTTTTT-CACAGTCATGCA-TAATGTGTT-CTAATGACTCCCCCC---TCTCTCTTCTAAACAGAAAAGGA-CATAGATCGTTATCTGATTTCCT-TAAT-A--TTTTCA-AAAA--TGNTA-TTTGTAG-TTAAAATTTT--ATGGTTTATTCGATACT-----------ACNAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATTCCTTTCCACTCTTTCTTGAGATGATCTCAAATTNATCATCCCATNTTTT
Reference ( family-3908 ) : TTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-CAAACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATGA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-C-------A--TTCACACA-------GG-ACA-G-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAAC----T-------ATAC--AAAT-AACA--C-AAAT-GTGTA-TTTA-ATA-C-A--TGNCAAGGTTGT-TACT--A-AAGATA-CATCATTTAAACATA--CAT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTGT--ACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATA-ACAAATACATGTGT-A-TGTAC-AACTA--AGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTTTCAAAG-ATTCA-A-ATAATTTCCA-TTT-TTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGC-AG-TTTGT-TTT-C-T--A---C-T-T-G-TATA-CA-T-TAATCCA-GATAACTTTAAATC-TA---TTCA---ATGATAGACAA-TTTCCTNAAATACATTTTGTAAAATA--T-A-TG-AAAT---GTTTCAAAT---GAT-AATTT-A---T-AAG-T--TTACCATTTCACTTTC---------------------TGAACAC-CAAGGANAAAAGTTTTCTTATCAGTTATAACAACATCGAATCGCAAAAGTT--GTCATTC--AA-CCANNATTGCACA-TCCTTAAAA----AT-ACT-AACTTTTT-CACAGTCATGCA-TAATGTGTT-CTAATGACTCCCCCC---TCTCTCTTCTAAACAGAAAAGGA-CATAGATCGTTATCTGATTTCCT-TAAT-A--TTTTCA-AAAA--TGNTA-TTTGTAG-TTAAAATTTT--ATGGTTTATTCGATACT-----------ACNAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATTCCTTTCCACTCTTTCTTGAGATGATCTCAAATTNATCATCCCATNTTTT
gi|1 : TTTTTCT-TTT-C---AGTTT----ACCAC-ATTTATTCAGGTT-ATA-T--T--TC-AGTCA----GGATT-TTA-CAA-TTGA-----------CCCTT-A-CA--CCCAGACCT--ACC---A--GGGGGTA---AGGT-ATAACGTA-TAATA-TT-ACGCT---------------AAACA-C-------C--TTCACACA-------GG-ACA-G-ACAATTCCACT--CTG-AAAAAA--GGA--G--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-T-------GGT-TTCAAAAC----T-------ATAC--AAAT-AACA--C-AAATTGTGTA-TTTA-ATA-C-A--TGTCAAGGTTGT-TACT--A-AAGATA-CATCATTTAAA-ATA--CAT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTATTTACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-TATATA-ACAAATATATGTGTTACTGTAC-AACTA--AGGGAGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTT-CAAAG-ATTCA-A-ATAATTTCCA-TTTCTTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGCCAA-TTTGT-TTT-C-T--A---C-T-T-G-TAAA-AAGT-TAATCCA-GAAAATTTTCAATC-TA---TTCA---ATGATAGACAA-TTTCCTT---TACATTTTGCAAAATA--T-A-TG-AAAT---GTTTCAAATTTTGATTAATTTCA---T-AAG-TCGTTAC-ATTTCACTTTC---------------------TGAACAC-CAAGGATAAATGTTTTCTT-TCAGTTCTAATA-C-TTGAATTGTAAAAATTC-ATCA--C--AAACCAAGATAGCACA-TTCTTAAAATCTAATTACT-AACTTTTTTCACAGTCATGCA-TAACATGTT-TAAATGACTCTTCTC---TCTCT-TTCTAAACAGAAAGGGA-CATAGATCGTTATCTGATTTTCT-TAAT-ACGTTTTCA-AAAAAATGTTA-TTTGTAGATTAAAATTTTTGATGGTTTATTCGATACT-----------GTAAACCATTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATACTTTTCAACTCTTTCTTGAGATGATTTCAAATTTATTATCCCATTTTTT
gi|10 : ACAGTCATGCA-TAATGTGTT-CTAATGACCCCCCCCCCTTCTCTCTTCTAAAAATAAAA--A-CATAGATCGTTGTCGTATAT--T-TAATCA--TTTTCA-TAAA---GGTA-TTCGTAG-TTAAAATATT--ATGATTTATTCGATAC------------ACCAACCGATGTAATTTGCTATCTTTAGTATTC-TTAAAAAATATATTT-ATGAATTC--TTCCACTCTT
gi|11 : TG-AATT---AAAGTATGTA-ATATAATT---A-TTT-CTTT---ACTG--TTTGCACAATT-ATTTTCTTCCATG--AG-TTTTT-TTT-C-T--A---C-T-TTG-TATG-CA-T-TATTCCA-GATAACTTTAAATT-AA---TTC----ATGATAGACAA-GTTCCTT--TTACATTTTGTAAACTA--T-ATTG-AAAT---GTTTCAAAT---GAT-AAT
gi|12 : gttaTGGAC-TGT----GTACTTTGG-CT----G-GGT-TTCAAAAA----T-------ATAC--AAAT-AGCA--C-AA-----------------------TGACAAGGTTGT-TGCT--ACAAGATA-CAACATTTAAACATA--CAT--ATA-------------CTACTGA-GTG-AT-TAAGGC-AT--TTAACACATTCTTGT--ACTT-TATTCA-AATTAAAG-TTA-TGAAGAGCTTGCATT----A-C--TAA-ATTAT-ACT-T-TATA-ACAAATACcatagttctaacctt
gi|13 : TATTCACATA-ATAAT--TAAT--AGTCA----GGGTT-TTGGCAT-GCG--------------CTT-A-CAAACCC--ACCTG-TCT---T--GGGGATA-CAGAGT-ATT--TTA-TCT-A-CC-ATTTACT---------CAC-ACATG-C-------A--CTCCAATG-------GG--------------CACT--------CAAA--GG---A--AGAGGGTTAAGAAA--G-A-GATAAA-A
gi|14 : aTTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-C-AACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATAA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-CACATTAAA--TTCACACA--------G-ACA-G-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AGG--A-A-Gtaccgtctggctaatcatctgttcaagatgatgtatac
gi|15 : CTCTTGT--ACTT-CATTT-TAATTTCAGTT-A-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATG-ACAAATACATGTAT-A-TGTAC-AACTA--AGGGG--------AAAAACTTTTCA-AGATA--CTTATG-AAATCAT-GCTTG-AGTTTTCAAAG-ATTCA-A-ATAATT
gi|16 : A-TTTGTAG-TTAAAACTTT--AGGATTTATTCGATA-----------------ATCATTGTGAGTTGCTATGTTTTGTATTCATTAAAA--CATTTTTTATGAATTCCTCTCCACTTCTTCTTGAGAT-ATCTCAAATTGATCATCCCATGTTTT
gi|17 : GTAT-A-TGTAC-AACTA--AGGGGGAAAAAAACAA--CTTTTCA-AGATA--CTTCTG-AAATTAT-ACTTG-AGTTTTTAAAG-ATTCA-A-ATAATTTCCATTTT-TTTTCAAACTGA-TTTGTACAATT-ATT
gi|18 : A-TTTATTTTCAAACTGATTT-GCCTAATT-ATTTT--TCCTTGC-AGCTTCTT-TTT-C-T--A---CTT-T-G-TATG-CA-T-TATTCCA-
gi|2 : agtttaagttatgaattaagagcatgcaatactacattTTTTTTT-TTTAC---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCAC---GGA-T-TTA-CATGATGA-----------CCCTTGA-CAACCCAA-ACCTG-ACC---A--GGG---A-CAGGG--ATAA-GTG--AA-A-TC-ACTCTCTCTGCACACACAC-ACACA-C-------A--TCCACACA-------GA-CCAGG-ACAG-TTCACT--CTG-AACAAAAGGGA--A--AGAAG--AAA-AGG--A-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----GCGGT-TTCAAAACG---TA------ACAC--AACTAAACA--CAAAAT-GTGTA-TTCA-ATACC-AATTGGCAAGTATG--TACTAAA-AAGATACCAT-ATTTAAACATAC-CAT--ACA---GTACATAT-GCTGCTGACGTG-GTCTAAGACAAG--TTAACTCACTCTTGT--ACTT-CATCTATAGCTT-AGCTTA-TGAAGA----GCA-T----ACC--TAA-ATTACAACT-T-TATACACAAATATATGTGTCA-TGTACAAACTA--A-GGGGAGACAAAAAAAACTCTTTC-AAGTA--CTTATGAAAATTAT-ACTTG-AG-TTTCAAAC-ACTCACA-ATAA-CTCCA--TT-CTTTCAAACTGATCTTGTACAATTCA--TT--TCCATGC-AA--TTGT-TTT-C-CTGA---CTT-T-GTTAAA-CA-TCTAATCCAGGAAAATTGTAAATCATAACTTCCA---A--ATAGACCATTTTCCT----TACATTTTGTAAAAAA--TCA-TGCAAAT---GTTTC-AAT---GAT-AATTT-T---A-AAGTT--TTACCATTTCACTTTCAACACGACACCCCGCCATTTCTGAACAC-CCAAGCAAAATGTTTTCTTATCAGTCATA--AATATTGAACAGCTAAAATTAGGTCACGCAAAA-CCAAGATTGC-CATTTCTTAAAAAG--AT-ACTAAACTTTTT-CACAGTCATGCATTAATATGTTCCTAATGACT-----C---TCTCTCTTCTTAACAGGAAAGAACCATAGATCATTATCTGATTTCTTGTAAT----TTGGCACAAAA--TGCTACTTTGTAG-TTTAA
gi|20 : attCTG-ACC---A--GGGG-TA-CAGGGT-TTGA-GTA-TAA-G-TT-ACTCTCT---------CAC-ACACA-C-------A--TTCACACA--------G-ATA-G-GCA--TTCACT--ATG-AACGAA--GGA--T--AGAAG--TAA-AAG--G-AGGAAGAA-AGTg
gi|21 : T-TAAT-AA-TTTTCA-AAAA--TG-TA-TTTGTAG-TTCATATTTT--ATGGTTTATTCGATACTGTTTAATTTACACTAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAA
gi|22 : TTTTGTAAAATA--T-A-TG-AAAT---ATTTCAAAT---GAT-AATTT-A---TGAAG-T--TTACCATTTCAATTTC---------------------TGAACACTTAAAGATAAAAGTTTTCTTATCAGTTATAATA
gi|23 : TGT--ACTT-CATTTCTGGTTTAAG-TTA-GGAGGA----GCA------A-CAACAA-AATAT-ACT-A-AACA-ACAAATACATGTAT-A-TGTAC-AACTAATATAAGGAAGAAAtt
gi|24 : tgTT-A---AGTTT----ACACC-ATTTATTCCGGGT-ATA-T--C--CC-AGACA----GGATT-TTA-CAT-AAAA-----------CCCTC-A-C-AACCCA-ACCTG-ACCATTA--GTGGATA-CAGGGt
gi|25 : TCA----AGATT-TTA--AC-GTG------------CCCTT-A-CAAACT---GTCTG-ACA---A--GGGGGTA-CA
gi|26 : aatattgcacatacaataT-TCC-C---AGTTT----ACAAC-ATTTATTCAG------------------------------T-TTA-CAT-ACGA-----------CCCTT-A-CAA-CCCA-ACCTG-AAC---A--GGGGGTA-CAAGGT-ATGA-ATA-caggtttgttttttatctaccattta
gi|27 : ACAATT-ATTTT--TCCATGC-AC-TTTGT-TTT-TAT--A---C-TCT-G-TATG-CA-T-TAGTCCA-GATAATTTTAAATC-TA---TTCA---
gi|28 : TTTGTACAATT-ATTTT--TCTATAT-AG-TCTGTGTTT-C-T--ATACT-T-T-G-TATA-CA-T-TAGTCCA-GA
gi|29 : aTTTTTT-TTT-T---AGTTT----ACAAG-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-Ta
gi|3 : TTTTTTTATTTAC---AGTTTCT--ACAACCATCTTTTCAGGTTTATA-T--T--T--AGTCA----GGATTGTTAACAT-ATGA-----------CCCTT-AGCAAAGCCC-ACCTGGACC---AC-GGAGGTA-CAGG-T-ATAA-GTG-TAA-AATT-ACTCTCT---------CAC-A-A-----------A--TCCACACA--------G-ACA-G-TCA--TTCA-T--CTGAAACAAA--GGA--A--AGAAG--TAA-AAG--GAA-GAAGAA-GTTCGGACTTGT----GTA-TCTGG-CT----G-GG--TTCAAAAC----T-------A-A---AAAT-AACA--C-AAAT-GTGTA-TATGTATA-CAA--TGTCAAGGTTGT-TACT--A-AAGATA-CAT-ATTAAAACATAGCCAT--ACATGTGTACCTATCGCTGCTGA--TGAGT-TTAGAC-AAGTTTAAC-CACTCTTGT--ACTT-CA-TTATAGCTATAGGTTATTGAAGA----G-A-T----A-C--TAA-ATTA--ACTGT-TATA-ACAAATATATGTGT-A-TGTAC-AACTA--GGGAGG--AAAAAAAAAACTTTTTC-AGATAGCCCTATG-AAA-TATAACTTGAAGTTTTCAAAG-ACTCA-A-AT-ATTTCCA-
gi|30 : aatt--GGGGGTA-CAGGGT-TTGA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-C-------A--CTC
gi|31 : TA--CATGTACA----TACATAT-ACTACTGA-GTG-GT-TAAGAC-AG--TT
gi|4 : TTTTTC-CTT-C---AGTAT----ACAAC-ATTTATTCA--TT-ATA-T--C--T--AGT------AGATT-TAA-CAT-AATA-----------CCCTT-A-CAA--TCA-ACC---ACC---A--GGTG-TA-CAGGATTGGGA-GTA-TTA-A-AT-ACTCTCT---------CATTACACA-C----------TTCACACA-------GG-AC--G-ACA--TTCACT--CTG-AACAAA--CGA--T--AGAAG--TAA-AGGATG-A-GGAAAA-AGTT--AC-TGT----GTACTCCGG-CT----C-GGTCTTCAAAAC----T-------A-----AAAA-AACA--A-AAAT----TAGTTTA-ATA-CAA--TGTCAG---TGTATACT--A-AA-ATA-CATCATTCAAACAT-----------------CATAT-ACTAC-GA-GT--GT-TAA-ACAAG--TT-ACACA--CTTGT--GCTTAAATTCATTCTATCAGTTAT-TGAAG-----GCA-TGCAAA-C--TAAGATAAC-ACT-T--------AAACA-------------GC-AACTA--AGGAGAAAAAAAAA--------TTCAAGATA--C-TAC--AAATAGT-AC-TG-AGTTTTCAAAG-ATTCA-A-A
gi|5 : aTTTTTT-TTT-GTAAAGTTTCACAACAGC-ATTTATTTAAATT-ATA-TACT--TGGAGTCAAGTGAGATT-----CAT-ATAATAATTAAAGTCTCTTT-A-CAAACCCA-CTCTG-ACC---AAGAGGGGTAGCAGGGT-TTGAGGTATTAA-A-TTAACTCTCT---------AAC-ACACAGC-------AACTTCACAAA-------AGTACA-GTACA--TCAGCTCACTG-AACAAA--GGAATA--AGAAG--TAA-AAG--G-ACGAAGAAGAGTCGGAC-TGTGGCAGCAATCCGGACTATGGA-GGT-TTCAAAAA----T-------ATAC--attc
gi|6 : -ACTTG-AGTTTTCAATG-TTTCA-A-ATAATTTCCA-TCT-TT--------------ATATACTT-GTTTT--CCC-TGC-AG-TTTGT-TTTTC-T--A---C-T-TTG-TATA-CA-A-TAATCCA-GATAACTTTAAATT-TA---TTCA---ATGATAGACAA-TTTCCTAAAATACATTTTGTAAAGTACCT-A-T--ATAT---GTCTCAAGT---GAT-AATTA-AC--T-AAG-T--TTATCATTTC-----------------------------------CAAGGAGAAAAGTTTTCTTTTCAATTATAACAACATCAAAT-GCAAAAGTT---TCATTC---A-CCATTATTGCACA-TCCTTAA----------------TTTTT-CAT--TCAAGCA-TAATGTGcattatagactactccatagtacatggttcaactgttgcaattccaggtacactcaaaaatgtat
gi|7 : TTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-C-AACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATAA-GTA-TAA-A-TT-ACTCTCTCA-------CAC-ACACA-C-------A--TTCACACA--------G-ACA-G-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AAG--GAA-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAACGAAAT-------ATATCGAAAC-AAAA--C-AAAattt
gi|8 : TTTATATACTT-GTTTT--CCC-TGC-AG-TTTGT-TTTTC-T--A---C-T-T-G-TGTAACA-A--AATCCA--ATAACTTTAATTT-TAA--TTCATGAATGAT---CAA-TTTCCTAAAATACATTTTGTAAAGTA--C-C-TG-ATATATAGTCTCAAGT---GAT-AATTT-AACTC-AAG-T--TTATCATTTC-----------------------------------CAAGGA-AAAAGTTTTCTT--CAATT-TAACAACATCAAATC---AAAGTT---TCATTC--A--CCATTATTGCACA-TCCTTAacggaacattttacaaccaaactttttca
gi|9 : CA-ACCTG-ATC---A--GAAGGTA------T-TTAG-GTA-T-----TT--CTCTTT---------CAC-ACACA-C-------A--CACACACATTCACATGG-ACA-G-ACA--CTCATT--CTG-AGCAAA----A--ATTAGAAG--TAA-AAG--G-AGGAAGAA-AGTTGGAC-TAC----ACAGTCTGG-CT----A-GGT-TTTAAAAA----TATCATGAATAC--AAAT-ATCAATC-AGAT-GTGTG-TTGC-A-----A--TGCCAAGGCTGT-TACTA-A-AAGAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATCTACCATTTACTCACACATGCACTCCAATAGGCACTCAAAGGAAGAGGGTTAAGAAAGGGATAAAATACCGTCTGCATGCTAATCATCTGTTCAAGATGATGTATACA
Alignments
lowQualScore : 11111 1111 11111111 1111 11111111111 111111111 1111111111 22222222 1 1111 111111 222222222222 333333333333333 11 1 11 2222 1 1 1111 111111 111 1 11 1 11111 1 111 111 3333 111111 111 111 3333333 11 99999999999999999999999999999999999 1 1111 44444444444444 1 7777777777777 1 1 1 222222222 1111 1111 3333 1 11111 11 6666666666666666 1 1 1 1
lowQualScore : 4 11111 4444 4 3 3 22222222 0000 3 7 3 77777777777 3 3 4 4 3 3 555 66 1 2 44 0 6 3 3 3 3 999999999 3 3 4444444444 44444444 4 4 4 99 55 4 55 88888 55 4 55 8 2 4 5 0000 2 5 555555 5 777777777777 5 888 5 77 5 99 000000000000000 1 1 6 55 6 8 0 55 99 2222 6 6 6 6 3 99 0 6 1 77 5 1 6 0 1 5 2222 555555 5 77 5 77 7777 5 4 0 111 5 77 0 1 3 6 99 1 6 5 5 0 5 5 5 5 3 2 00 0 4 66 6 5 5 5 0 5 66 00000 5 0 5 5 777 1 5 6 888 111 0 0 8 5555 111111 6 111 111 6 3333333 8 11 55555555555555555555555555555555555 8 1 5 5 22 3 3 9999 55555555555555 22 3 0 4444444444444 3 3 0 3 999999999 6 4444 6666 7777 0 77777 8 8 1 33 4444444444444444 0 7 3 2 5 1 1
lowQualScore : . ..... .... . . . ........ .... . . . ........... . . . . . . ... .. . . .. . . . . . . ......... . . .......... ........ . . . .. .. . .. ..... .. . .. . . . . .... . . ...... . ............ . ... . .. . .. ............... . . . .. . . . .. .. .... . . . . . .. . . . .. . . . . . . .... ...... . .. . .. .... . . . ... . .. . . . . .. . . . . . . . . . . . .. . . .. . . . . . . .. ..... . . . . ... . . . ... ... . . . .... ...... . ... ... . ....... . .. ................................... . . . . .. . . .... .............. .. . . ............. . . . . ......... . .... .... .... . ..... . . . .. ................ . . . . . . .
lowQualScore : 4 66666 0000 0 6 6 77777777 4444 3 3 6 33333333333 6 6 4 3 3 1 444 88 2 9 22 1 7 3 6 6 6 555555555 6 6 5555555555 66666666 0 0 0 55 55 0 55 77777 55 0 55 0 0 4 0 6666 5 0 999999 0 999999999999 1 222 7 99 7 22 333333333333333 0 8 7 88 7 0 0 88 22 5555 7 7 7 7 3 22 8 0 0 99 7 4 6 6 7 7 1111 999999 7 99 7 44 9999 7 0 4 666 7 99 7 4 2 7 22 7 7 7 0 1 0 0 0 7 3 5 33 1 4 99 5 0 0 0 0 0 99 88888 0 0 0 0 555 2 0 7 333 777 8 8 0 4444 000000 7 777 777 7 4444444 0 00 88888888888888888888888888888888888 8 4 8 6 22 2 2 0000 00000000000000 00 2 0 0000000000000 3 2 0 3 333333333 7 7777 7777 0000 0 88888 0 0 0 88 8888888888888888 0 3 3 0 0 0 0
consensus : TTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-CAAACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATGA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-C-------A--TTCACACA-------GG-ACA-G-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAAC----T-------ATAC--AAAT-AACA--C-AAAT-GTGTA-TTTA-ATA-C-A--TGNCAAGGTTGT-TACT--A-AAGATA-CATCATTTAAACATA--CAT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTGT--ACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATA-ACAAATACATGTGT-A-TGTAC-AACTA--AGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTTTCAAAG-ATTCA-A-ATAATTTCCA-TTT-TTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGC-AG-TTTGT-TTT-C-T--A---C-T-T-G-TATA-CA-T-TAATCCA-GATAACTTTAAATC-TA---TTCA---ATGATAGACAA-TTTCCTNAAATACATTTTGTAAAATA--T-A-TG-AAAT---GTTTCAAAT---GAT-AATTT-A---T-AAG-T--TTACCATTTCACTTTC---------------------TGAACAC-CAAGGANAAAAGTTTTCTTATCAGTTATAACAACATCGAATCGCAAAAGTT--GTCATTC--AA-CCANNATTGCACA-TCCTTAAAA----AT-ACT-AACTTTTT-CACAGTCATGCA-TAATGTGTT-CTAATGACTCCCCCC---TCTCTCTTCTAAACAGAAAAGGA-CATAGATCGTTATCTGATTTCCT-TAAT-A--TTTTCA-AAAA--TGNTA-TTTGTAG-TTAAAATTTT--ATGGTTTATTCGATACT-----------ACNAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATTCCTTTCCACTCTTTCTTGAGATGATCTCAAATTNATCATCCCATNTTTT
Reference ( family-3908 ) : TTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-CAAACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATGA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-C-------A--TTCACACA-------GG-ACA-G-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAAC----T-------ATAC--AAAT-AACA--C-AAAT-GTGTA-TTTA-ATA-C-A--TGNCAAGGTTGT-TACT--A-AAGATA-CATCATTTAAACATA--CAT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTGT--ACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATA-ACAAATACATGTGT-A-TGTAC-AACTA--AGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTTTCAAAG-ATTCA-A-ATAATTTCCA-TTT-TTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGC-AG-TTTGT-TTT-C-T--A---C-T-T-G-TATA-CA-T-TAATCCA-GATAACTTTAAATC-TA---TTCA---ATGATAGACAA-TTTCCTNAAATACATTTTGTAAAATA--T-A-TG-AAAT---GTTTCAAAT---GAT-AATTT-A---T-AAG-T--TTACCATTTCACTTTC---------------------TGAACAC-CAAGGANAAAAGTTTTCTTATCAGTTATAACAACATCGAATCGCAAAAGTT--GTCATTC--AA-CCANNATTGCACA-TCCTTAAAA----AT-ACT-AACTTTTT-CACAGTCATGCA-TAATGTGTT-CTAATGACTCCCCCC---TCTCTCTTCTAAACAGAAAAGGA-CATAGATCGTTATCTGATTTCCT-TAAT-A--TTTTCA-AAAA--TGNTA-TTTGTAG-TTAAAATTTT--ATGGTTTATTCGATACT-----------ACNAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATTCCTTTCCACTCTTTCTTGAGATGATCTCAAATTNATCATCCCATNTTTT
gi|1 : TTTTTCT-TTT-C---AGTTT----ACCAC-ATTTATTCAGGTT-ATA-T--T--TC-AGTCA----GGATT-TTA-CAA-TTGA-----------CCCTT-A-CA--CCCAGACCT--ACC---A--GGGGGTA---AGGT-ATAACGTA-TAATA-TT-ACGCT---------------AAACA-C-------C--TTCACACA-------GG-ACA-G-ACAATTCCACT--CTG-AAAAAA--GGA--G--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-T-------GGT-TTCAAAAC----T-------ATAC--AAAT-AACA--C-AAATTGTGTA-TTTA-ATA-C-A--TGTCAAGGTTGT-TACT--A-AAGATA-CATCATTTAAA-ATA--CAT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTATTTACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-TATATA-ACAAATATATGTGTTACTGTAC-AACTA--AGGGAGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTT-CAAAG-ATTCA-A-ATAATTTCCA-TTTCTTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGCCAA-TTTGT-TTT-C-T--A---C-T-T-G-TAAA-AAGT-TAATCCA-GAAAATTTTCAATC-TA---TTCA---ATGATAGACAA-TTTCCTT---TACATTTTGCAAAATA--T-A-TG-AAAT---GTTTCAAATTTTGATTAATTTCA---T-AAG-TCGTTAC-ATTTCACTTTC---------------------TGAACAC-CAAGGATAAATGTTTTCTT-TCAGTTCTAATA-C-TTGAATTGTAAAAATTC-ATCA--C--AAACCAAGATAGCACA-TTCTTAAAATCTAATTACT-AACTTTTTTCACAGTCATGCA-TAACATGTT-TAAATGACTCTTCTC---TCTCT-TTCTAAACAGAAAGGGA-CATAGATCGTTATCTGATTTTCT-TAAT-ACGTTTTCA-AAAAAATGTTA-TTTGTAGATTAAAATTTTTGATGGTTTATTCGATACT-----------GTAAACCATTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATACTTTTCAACTCTTTCTTGAGATGATTTCAAATTTATTATCCCATTTTTT
gi|10 : ACAGTCATGCA-TAATGTGTT-CTAATGACCCCCCCCCCTTCTCTCTTCTAAAAATAAAA--A-CATAGATCGTTGTCGTATAT--T-TAATCA--TTTTCA-TAAA---GGTA-TTCGTAG-TTAAAATATT--ATGATTTATTCGATAC------------ACCAACCGATGTAATTTGCTATCTTTAGTATTC-TTAAAAAATATATTT-ATGAATTC--TTCCACTCTT
gi|11 : TG-AATT---AAAGTATGTA-ATATAATT---A-TTT-CTTT---ACTG--TTTGCACAATT-ATTTTCTTCCATG--AG-TTTTT-TTT-C-T--A---C-T-TTG-TATG-CA-T-TATTCCA-GATAACTTTAAATT-AA---TTC----ATGATAGACAA-GTTCCTT--TTACATTTTGTAAACTA--T-ATTG-AAAT---GTTTCAAAT---GAT-AAT
gi|12 : gttaTGGAC-TGT----GTACTTTGG-CT----G-GGT-TTCAAAAA----T-------ATAC--AAAT-AGCA--C-AA-----------------------TGACAAGGTTGT-TGCT--ACAAGATA-CAACATTTAAACATA--CAT--ATA-------------CTACTGA-GTG-AT-TAAGGC-AT--TTAACACATTCTTGT--ACTT-TATTCA-AATTAAAG-TTA-TGAAGAGCTTGCATT----A-C--TAA-ATTAT-ACT-T-TATA-ACAAATACcatagttctaacctt
gi|13 : TATTCACATA-ATAAT--TAAT--AGTCA----GGGTT-TTGGCAT-GCG--------------CTT-A-CAAACCC--ACCTG-TCT---T--GGGGATA-CAGAGT-ATT--TTA-TCT-A-CC-ATTTACT---------CAC-ACATG-C-------A--CTCCAATG-------GG--------------CACT--------CAAA--GG---A--AGAGGGTTAAGAAA--G-A-GATAAA-A
gi|14 : aTTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-C-AACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATAA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-CACATTAAA--TTCACACA--------G-ACA-G-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AGG--A-A-Gtaccgtctggctaatcatctgttcaagatgatgtatac
gi|15 : CTCTTGT--ACTT-CATTT-TAATTTCAGTT-A-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATG-ACAAATACATGTAT-A-TGTAC-AACTA--AGGGG--------AAAAACTTTTCA-AGATA--CTTATG-AAATCAT-GCTTG-AGTTTTCAAAG-ATTCA-A-ATAATT
gi|16 : A-TTTGTAG-TTAAAACTTT--AGGATTTATTCGATA-----------------ATCATTGTGAGTTGCTATGTTTTGTATTCATTAAAA--CATTTTTTATGAATTCCTCTCCACTTCTTCTTGAGAT-ATCTCAAATTGATCATCCCATGTTTT
gi|17 : GTAT-A-TGTAC-AACTA--AGGGGGAAAAAAACAA--CTTTTCA-AGATA--CTTCTG-AAATTAT-ACTTG-AGTTTTTAAAG-ATTCA-A-ATAATTTCCATTTT-TTTTCAAACTGA-TTTGTACAATT-ATT
gi|18 : A-TTTATTTTCAAACTGATTT-GCCTAATT-ATTTT--TCCTTGC-AGCTTCTT-TTT-C-T--A---CTT-T-G-TATG-CA-T-TATTCCA-
gi|2 : agtttaagttatgaattaagagcatgcaatactacattTTTTTTT-TTTAC---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCAC---GGA-T-TTA-CATGATGA-----------CCCTTGA-CAACCCAA-ACCTG-ACC---A--GGG---A-CAGGG--ATAA-GTG--AA-A-TC-ACTCTCTCTGCACACACAC-ACACA-C-------A--TCCACACA-------GA-CCAGG-ACAG-TTCACT--CTG-AACAAAAGGGA--A--AGAAG--AAA-AGG--A-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----GCGGT-TTCAAAACG---TA------ACAC--AACTAAACA--CAAAAT-GTGTA-TTCA-ATACC-AATTGGCAAGTATG--TACTAAA-AAGATACCAT-ATTTAAACATAC-CAT--ACA---GTACATAT-GCTGCTGACGTG-GTCTAAGACAAG--TTAACTCACTCTTGT--ACTT-CATCTATAGCTT-AGCTTA-TGAAGA----GCA-T----ACC--TAA-ATTACAACT-T-TATACACAAATATATGTGTCA-TGTACAAACTA--A-GGGGAGACAAAAAAAACTCTTTC-AAGTA--CTTATGAAAATTAT-ACTTG-AG-TTTCAAAC-ACTCACA-ATAA-CTCCA--TT-CTTTCAAACTGATCTTGTACAATTCA--TT--TCCATGC-AA--TTGT-TTT-C-CTGA---CTT-T-GTTAAA-CA-TCTAATCCAGGAAAATTGTAAATCATAACTTCCA---A--ATAGACCATTTTCCT----TACATTTTGTAAAAAA--TCA-TGCAAAT---GTTTC-AAT---GAT-AATTT-T---A-AAGTT--TTACCATTTCACTTTCAACACGACACCCCGCCATTTCTGAACAC-CCAAGCAAAATGTTTTCTTATCAGTCATA--AATATTGAACAGCTAAAATTAGGTCACGCAAAA-CCAAGATTGC-CATTTCTTAAAAAG--AT-ACTAAACTTTTT-CACAGTCATGCATTAATATGTTCCTAATGACT-----C---TCTCTCTTCTTAACAGGAAAGAACCATAGATCATTATCTGATTTCTTGTAAT----TTGGCACAAAA--TGCTACTTTGTAG-TTTAA
gi|20 : attCTG-ACC---A--GGGG-TA-CAGGGT-TTGA-GTA-TAA-G-TT-ACTCTCT---------CAC-ACACA-C-------A--TTCACACA--------G-ATA-G-GCA--TTCACT--ATG-AACGAA--GGA--T--AGAAG--TAA-AAG--G-AGGAAGAA-AGTg
gi|21 : T-TAAT-AA-TTTTCA-AAAA--TG-TA-TTTGTAG-TTCATATTTT--ATGGTTTATTCGATACTGTTTAATTTACACTAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAA
gi|22 : TTTTGTAAAATA--T-A-TG-AAAT---ATTTCAAAT---GAT-AATTT-A---TGAAG-T--TTACCATTTCAATTTC---------------------TGAACACTTAAAGATAAAAGTTTTCTTATCAGTTATAATA
gi|23 : TGT--ACTT-CATTTCTGGTTTAAG-TTA-GGAGGA----GCA------A-CAACAA-AATAT-ACT-A-AACA-ACAAATACATGTAT-A-TGTAC-AACTAATATAAGGAAGAAAtt
gi|24 : tgTT-A---AGTTT----ACACC-ATTTATTCCGGGT-ATA-T--C--CC-AGACA----GGATT-TTA-CAT-AAAA-----------CCCTC-A-C-AACCCA-ACCTG-ACCATTA--GTGGATA-CAGGGt
gi|25 : TCA----AGATT-TTA--AC-GTG------------CCCTT-A-CAAACT---GTCTG-ACA---A--GGGGGTA-CA
gi|26 : aatattgcacatacaataT-TCC-C---AGTTT----ACAAC-ATTTATTCAG------------------------------T-TTA-CAT-ACGA-----------CCCTT-A-CAA-CCCA-ACCTG-AAC---A--GGGGGTA-CAAGGT-ATGA-ATA-caggtttgttttttatctaccattta
gi|27 : ACAATT-ATTTT--TCCATGC-AC-TTTGT-TTT-TAT--A---C-TCT-G-TATG-CA-T-TAGTCCA-GATAATTTTAAATC-TA---TTCA---
gi|28 : TTTGTACAATT-ATTTT--TCTATAT-AG-TCTGTGTTT-C-T--ATACT-T-T-G-TATA-CA-T-TAGTCCA-GA
gi|29 : aTTTTTT-TTT-T---AGTTT----ACAAG-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-Ta
gi|3 : TTTTTTTATTTAC---AGTTTCT--ACAACCATCTTTTCAGGTTTATA-T--T--T--AGTCA----GGATTGTTAACAT-ATGA-----------CCCTT-AGCAAAGCCC-ACCTGGACC---AC-GGAGGTA-CAGG-T-ATAA-GTG-TAA-AATT-ACTCTCT---------CAC-A-A-----------A--TCCACACA--------G-ACA-G-TCA--TTCA-T--CTGAAACAAA--GGA--A--AGAAG--TAA-AAG--GAA-GAAGAA-GTTCGGACTTGT----GTA-TCTGG-CT----G-GG--TTCAAAAC----T-------A-A---AAAT-AACA--C-AAAT-GTGTA-TATGTATA-CAA--TGTCAAGGTTGT-TACT--A-AAGATA-CAT-ATTAAAACATAGCCAT--ACATGTGTACCTATCGCTGCTGA--TGAGT-TTAGAC-AAGTTTAAC-CACTCTTGT--ACTT-CA-TTATAGCTATAGGTTATTGAAGA----G-A-T----A-C--TAA-ATTA--ACTGT-TATA-ACAAATATATGTGT-A-TGTAC-AACTA--GGGAGG--AAAAAAAAAACTTTTTC-AGATAGCCCTATG-AAA-TATAACTTGAAGTTTTCAAAG-ACTCA-A-AT-ATTTCCA-
gi|30 : aatt--GGGGGTA-CAGGGT-TTGA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-C-------A--CTC
gi|31 : TA--CATGTACA----TACATAT-ACTACTGA-GTG-GT-TAAGAC-AG--TT
gi|4 : TTTTTC-CTT-C---AGTAT----ACAAC-ATTTATTCA--TT-ATA-T--C--T--AGT------AGATT-TAA-CAT-AATA-----------CCCTT-A-CAA--TCA-ACC---ACC---A--GGTG-TA-CAGGATTGGGA-GTA-TTA-A-AT-ACTCTCT---------CATTACACA-C----------TTCACACA-------GG-AC--G-ACA--TTCACT--CTG-AACAAA--CGA--T--AGAAG--TAA-AGGATG-A-GGAAAA-AGTT--AC-TGT----GTACTCCGG-CT----C-GGTCTTCAAAAC----T-------A-----AAAA-AACA--A-AAAT----TAGTTTA-ATA-CAA--TGTCAG---TGTATACT--A-AA-ATA-CATCATTCAAACAT-----------------CATAT-ACTAC-GA-GT--GT-TAA-ACAAG--TT-ACACA--CTTGT--GCTTAAATTCATTCTATCAGTTAT-TGAAG-----GCA-TGCAAA-C--TAAGATAAC-ACT-T--------AAACA-------------GC-AACTA--AGGAGAAAAAAAAA--------TTCAAGATA--C-TAC--AAATAGT-AC-TG-AGTTTTCAAAG-ATTCA-A-A
gi|5 : aTTTTTT-TTT-GTAAAGTTTCACAACAGC-ATTTATTTAAATT-ATA-TACT--TGGAGTCAAGTGAGATT-----CAT-ATAATAATTAAAGTCTCTTT-A-CAAACCCA-CTCTG-ACC---AAGAGGGGTAGCAGGGT-TTGAGGTATTAA-A-TTAACTCTCT---------AAC-ACACAGC-------AACTTCACAAA-------AGTACA-GTACA--TCAGCTCACTG-AACAAA--GGAATA--AGAAG--TAA-AAG--G-ACGAAGAAGAGTCGGAC-TGTGGCAGCAATCCGGACTATGGA-GGT-TTCAAAAA----T-------ATAC--attc
gi|6 : -ACTTG-AGTTTTCAATG-TTTCA-A-ATAATTTCCA-TCT-TT--------------ATATACTT-GTTTT--CCC-TGC-AG-TTTGT-TTTTC-T--A---C-T-TTG-TATA-CA-A-TAATCCA-GATAACTTTAAATT-TA---TTCA---ATGATAGACAA-TTTCCTAAAATACATTTTGTAAAGTACCT-A-T--ATAT---GTCTCAAGT---GAT-AATTA-AC--T-AAG-T--TTATCATTTC-----------------------------------CAAGGAGAAAAGTTTTCTTTTCAATTATAACAACATCAAAT-GCAAAAGTT---TCATTC---A-CCATTATTGCACA-TCCTTAA----------------TTTTT-CAT--TCAAGCA-TAATGTGcattatagactactccatagtacatggttcaactgttgcaattccaggtacactcaaaaatgtat
gi|7 : TTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-C-AACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATAA-GTA-TAA-A-TT-ACTCTCTCA-------CAC-ACACA-C-------A--TTCACACA--------G-ACA-G-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AAG--GAA-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAACGAAAT-------ATATCGAAAC-AAAA--C-AAAattt
gi|8 : TTTATATACTT-GTTTT--CCC-TGC-AG-TTTGT-TTTTC-T--A---C-T-T-G-TGTAACA-A--AATCCA--ATAACTTTAATTT-TAA--TTCATGAATGAT---CAA-TTTCCTAAAATACATTTTGTAAAGTA--C-C-TG-ATATATAGTCTCAAGT---GAT-AATTT-AACTC-AAG-T--TTATCATTTC-----------------------------------CAAGGA-AAAAGTTTTCTT--CAATT-TAACAACATCAAATC---AAAGTT---TCATTC--A--CCATTATTGCACA-TCCTTAacggaacattttacaaccaaactttttca
gi|9 : CA-ACCTG-ATC---A--GAAGGTA------T-TTAG-GTA-T-----TT--CTCTTT---------CAC-ACACA-C-------A--CACACACATTCACATGG-ACA-G-ACA--CTCATT--CTG-AGCAAA----A--ATTAGAAG--TAA-AAG--G-AGGAAGAA-AGTTGGAC-TAC----ACAGTCTGG-CT----A-GGT-TTTAAAAA----TATCATGAATAC--AAAT-ATCAATC-AGAT-GTGTG-TTGC-A-----A--TGCCAAGGCTGT-TACTA-A-AAGAT
blockSeqs : A GTAA CACA C T A ACTTGG AGTG G G G TAATTAAAGTC G G A A . G ATT AG A G TG G T . A A CTGCACACA T G ACATTAAA TTCACATG T G T G CA A AG ATA GT G AT A G G T GGCA C A ATGGA C TATCATGA T TCG A AT A G TTCAATACCAAT A T A AA C C C GC GT TGTG C C A C A GT A T . A A A T T T GCTT TGCAA C AA G CA GTT C C CA A AT A A A GC T A A A T C T T A C AT C CT A . C G T A TG TACT C T T A TC T G A ACT TGA T AAAA CCTA C ATA . . AACTC T . ACTTTCAACACGACACCCCGCCATTTCTGAACAC A T A A AT A A AGCT AGGTCACGCAAAA AG A T AAAGATACTA . A T C CCCCCCCCT C GAAC CTTG CA C TGC C . A . CTGTTTAATTTACACT A A T C . G G
blockSeqs : . AC CT . . . TAAT C . A . . . . A A . . . C G . A . . . . . CA . . AAC G . . . . . . . ATT . . . A C . . . C . GC . GAAAT C C . . . G TATGTATACAA G A . A . . C C . G . . . . A . T C . . A C C T . . TT . . . T TT . C A . . A A . . T . . . . . . . . C AT . . T . . . T . . CT . T . . T T . . A . . AAAA TAT . . . . ATG . . AATTTCTGAACACT T A A A AC A A GCA TCATTCA TT A . . . A . . C C A T AA . GG . . A . CACC . . . .
blockSeqs : . AC . . . . CCC . . . . . . . A C . . . . A . A . . . . . . . . A G . . . . . . . A . . . . G . . . C . G . GTA T C . . . G GTTTAATACAA T T . . . . . . . . . . . . . . A C . . C A G T . . T . . . C TT . T A . . A A . . T . . . . . . . . C A . . A . . . . . . CT . . . . T A . . . . . TT TCA . . . . ACT . . . G A T A AC A A C TCATTCA TT . . . . . . TG . . T . . .
blockSeqs : . C . . . . TT . . . . . . . A A . . . . G . A . . . . . . . . A G . . . . . . . A . . . . . . . . A . G . T T C . . . . TTGCAA T C . . . . . . . . . . . . . . . C . . A T T T . . T . . . T TT . C A . . A . . . C . . . . . . . . . . . . A . . . . . . C . . . . T G . . . . . . TA . . . . TA . . . . A . . . . . C
blockSeqs : . A . . . . TT . . . . . . . A A . . . . G . T . . . . . . . . A A . . . . . . . A . . . . . . . . C . C . T T C . . . . . C . . . . . . . . . . . . . . . . A C . A . . T . . . C AA . T A . . . . . . . . . . . . . . . . . . . A . . . . . . C . . . . T G . . . . CC . . . .
blockSeqs : . C . . . . TT . . . . . . . A A . . . . G . A . . . . . . . . A . . . . . . . . T . . . . . . . . G . G . T . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . C . . . . A A .
blockSeqs : . T . . . . TT . . . . . . . A A . . . . G . A . . . . . . . . A . . . . . . . . A . . . . . . . . . . A . T . . . . . . . . . . . . . . . C . . . . A A .
blockSeqs : . C . . . . CT . . . . . . . . A . . . . G . T . . . . . . . . A . . . . . . . . T . . . . . . .
blockSeqs : C . . . . TT . . . . . . . . . . . . . G . T . . . . . . . . A . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . G . A . . . . . . . . .
blockSeqs : . . . . . . . . T . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqCons : TT****** ** G***** G* TTCGATACAA***** **** ** TT** A** T** **** *** ** ***********************************
originalCons : TTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-CAAACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATGA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-C-------A--TTCACACA-------GG-ACA-G-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAAC----T-------ATAC--AAAT-AACA--C-AAAT-GTGTA-TTTA-ATA-C-A--TGNCAAGGTTGT-TACT--A-AAGATA-CATCATTTAAACATA--CAT--ACA---GTACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTGT--ACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACT-T-TATA-ACAAATACATGTGT-A-TGTAC-AACTA--AGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTTTCAAAG-ATTCA-A-ATAATTTCCA-TTT-TTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGC-AG-TTTGT-TTT-C-T--A---C-T-T-G-TATA-CA-T-TAATCCA-GATAACTTTAAATC-TA---TTCA---ATGATAGACAA-TTTCCTNAAATACATTTTGTAAAATA--T-A-TG-AAAT---GTTTCAAAT---GAT-AATTT-A---T-AAG-T--TTACCATTTCACTTTC---------------------TGAACAC-CAAGGANAAAAGTTTTCTTATCAGTTATAACAACATCGAATCGCAAAAGTT--GTCATTC--AA-CCANNATTGCACA-TCCTTAAAA----AT-ACT-AACTTTTT-CACAGTCATGCA-TAATGTGTT-CTAATGACTCCCCCC---TCTCTCTTCTAAACAGAAAAGGA-CATAGATCGTTATCTGATTTCCT-TAAT-A--TTTTCA-AAAA--TGNTA-TTTGTAG-TTAAAATTTT--ATGGTTTATTCGATACT-----------ACNAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATTCCTTTCCACTCTTTCTTGAGATGATCTCAAATTNATCATCCCATNTTTT
finalCons : TTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-TTT------AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-CAAACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATGA-GTA-TAA-A-TT-ACTCTCT---------CAC-ACACA-C-------A--TTCACACA-------GG-ACA-G-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CTG-----GGT-TTCAAAAC----T-------ATAC--AAAT-AACA--C-AAATG-TGTATTCGATACAA-----TGNCAAGGTTGT-TACT--A-AAGATA-CATCATTTAAACATA--CAT--ACA----TACATAT-GCTGCTGA-GTG-GT-TAAGAC-AG--TTAACACACTCTTGT--ACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----A-C--TAA-ATTAC-ACTTT--ATA-ACAAATACATGTGTA--TGTAC-AACTA--AGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATG-AAATTAT-ACTTG-AGTTTTCAAAG-ATTCA-A-ATAATTTCCA-TTT-TTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGC-AG-TTTGT-TTT-C-T--A---C-T-T-G-TATA-CAT--TAATCCA-GATAACTTTAAATC-TA---TTCA---ATGATAGACAA-TTTCCT----TACATTTTGTAAAATA--T-A-TG-AAAT---GTTTCAAAT---GAT-AATTT-A---T-AAG-T--TTACCATTTC-----------------------------------CAAGGANAAAAGTTTTCTTATCAGTTATAACAACATCGAATCGCAAAAGTT--GTCATTC--AA-CCANNATTGCACA-TCCTTAAAA----AT-ACT-AACTTTTT-CACAGTCATGCA-TAATGTGTT-CTAATGACTCCCCCC---TCTCTCTTCTAAACAGAAAAGGA-CATAGATCGTTATCTGATTTCCT-TAAT-A--TTTTCA-AAAA--TGNTA-TTTGTAG-TTAAAATTTT--ATGGTTTATTCGATACT-----------ACNAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATTCCTTTCCACTCTTTCTTGAGATGATCTCAAATTNATCATCCCATNTTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATCTACCATTTACTCACACATGCACTCCAATAGGCACTCAAAGGAAGAGGGTTAAGAAAGGGATAAAATACCGTCTGCATGCTAATCATCTGTTCAAGATGATGTATACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 11111 1111 11111111 1111 11111111111 111111111 1111111111 22222222 1 1111 111111 2222222222222222222 222222 1 444444444444444 1111 1 1111 111111 11 111 1 11111 1 111 111 3333333 111111 111 111 2222 22222 11 33333333333333333333333333333333333333333333333 11 1111 4444444444444 1 77777777777777777 1 1 1 222222222 1111 1111 3333 1 11111 11 6666666666666666 1 1 1 1
lowQualScore : 4 11111 4444 4 3 3 22222222 0000 3 7 3 77777777777 3 3 4 4 3 3 555 66 1 2 44 0 6 3 3 3 3 55 444444444 3 3 4444444444 44444444 4 8 99 55 4 55 88888 55 4 55 8 2 4 5 0000 2 5 555555 5 6666666666666666666 5 77 9999 888888 6 3 6 1 1 6 6 6 99 8 0 555555555555555 6 6 6 6 6 2222 0 6 1 77 5 1 6 0 1 5 2222 555555 33 5 1 5 7777 5 4 0 111 5 77 88 3 6 99 1 6 5 5 6 5 5 5 7 5 3 55 88 4 66 6 5 5 5 5 5 5 66 00000 5 0 5 5 777 1 6 6 888 111 0 0 8 6666666 8 111111 6 111 99 111 0000 99 8 77777 11 11111111111111111111111111111111111111111111111 8 8 11 5 6 3 3 9999 5555555555555 22 3 0 22222222222222222 3 3 0 3 999999999 6 4444 6666 7777 0 77777 8 8 1 33 4444444444444444 0 7 3 2 5 1 1
lowQualScore : . ..... .... . . . ........ .... . . . ........... . . . . . . ... .. . . .. . . . . . . .. ......... . . .......... ........ . . .. .. . .. ..... .. . .. . . . . .... . . ...... . ................... . .. .... ...... . . . . . . . . .. . . ............... . . . . . .... . . . .. . . . . . . .... ...... .. . . . .... . . . ... . .. .. . . .. . . . . . . . . . . . .. .. . .. . . . . . . . .. ..... . . . . ... . . . ... ... . . . ....... . ...... . ... .. ... .... .. . ..... .. ............................................... . . .. . . . . .... ............. .. . . ................. . . . . ......... . .... .... .... . ..... . . . .. ................ . . . . . . .
lowQualScore : 4 66666 0000 0 6 6 77777777 4444 3 3 6 33333333333 6 6 4 3 3 1 444 88 2 9 22 1 7 3 6 6 6 00 555555555 6 6 5555555555 66666666 0 0 55 55 0 55 77777 55 0 55 0 0 4 0 6666 5 0 999999 0 2222222222222222222 7 99 9999 555555 7 2 7 0 8 7 7 7 22 0 0 222222222222222 7 7 7 7 7 7777 8 0 0 99 7 4 6 6 7 7 1111 999999 66 7 7 7 9999 7 0 4 666 7 99 00 2 7 22 7 7 7 0 2 0 0 0 3 7 3 77 88 4 99 5 0 0 0 0 0 0 99 88888 0 0 0 0 555 2 7 7 333 777 8 8 0 0000000 0 000000 7 777 22 777 8888 22 0 00000 00 00000000000000000000000000000000000000000000000 8 0 66 6 4 2 2 0000 0000000000000 00 2 0 00000000000000000 3 2 0 3 333333333 7 7777 7777 0000 0 88888 0 0 0 88 8888888888888888 0 3 3 0 0 0 0
consensus : TTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-CAAACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATGA-GTA-TAA-A-TT-ACTCTCT--C---------AC-ACACA-C-------A--TTCACACA-------GG-ACAG-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAAC----T-------A-TAC--AAATAA-CA--CAAA-T-GTGTA-TTTA-ATAC-AAT-GNCAAGGTTGT-TACT-A-AA--GATAC-ATCATTTAAACATA--C-AT--ACA----TACATAT-GCTGCTGA-GTG-GT-TAAGAC-A-G--TTAACACACTCTTGT--ACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----AC--TAA-ATTACA-CT-T-TATA-ACAAATACATGTGT-A-TGTACAA-CTA--AGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATGAAA-TTAT-ACTTG-AGTTTTCAAAG-ATTCA-A-ATAATTTCCA-TTT-TTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGC-AG-TTTG-T-TTT-C-T--A---C-T-T-GT-ATA-CA-T-TAATCCAGATAACTT-TAAATC-TA---TTCA---ATGATAGACAATTT-CC--TAAAAT-ACATTTTGTAAAATA--T-A-TG-AAAT---GTTTCAA--AT---GAT----AA--TTT-A---T-AAGT--TTAC-TT----------------CATTT--------C--------------CAAGGATAAAA-GTTTTCTTATCAGTTATAACAACATCGAATCGCAAAAGTT--GTCATTCAAA-CCANNATTGCACATC-CTTAAAA----A--T-ACTAA-CTTTTT-CACAGTCATGCA-TAATGTGTT-CTAATGACTCCCCCC---TCTCTCTTCTAAACAGAAAAGGA-CATAGATCGTTATCTGATTTCCT-TAAT-A--TTTTCA-AAAA--TGNTA-TTTGTAG-TTAAAATTTT--ATGGTTTATTCGATACT-----------ACNAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATTCCTTTCCACTCTTTCTTGAGATGATCTCAAATTNATCATCCCATNTTTT
Reference ( family-3908 ) : TTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-CAAACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATGA-GTA-TAA-A-TT-ACTCTCT--C---------AC-ACACA-C-------A--TTCACACA-------GG-ACAG-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAAC----T-------A-TAC--AAATAA-CA--CAAA-T-GTGTA-TTCG-ATAC-AAT-GNCAAGGTTGT-TACT-A-AA--GATAC-ATCATTTAAACATA--C-AT--ACA----TACATAT-GCTGCTGA-GTG-GT-TAAGAC-A-G--TTAACACACTCTTGT--ACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----AC--TAA-ATTACA-CT-T-TATA-ACAAATACATGTGT-A-TGTACAA-CTA--AGGGGGAAAAAAAAAAAACTTTTTC-AGATA--CTTATGAAA-TTAT-ACTTG-AGTTTTCAAAG-ATTCA-A-ATAATTTCCA-TTT-TTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGC-AG-TTTG-T-TTT-C-T--A---C-T-T-GT-ATA-CA-T-TAATCCAGATAACTT-TAAATC-TA---TTCA---ATGATAGACAATTT-CC--T----T-ACATTTTGTAAAATA--T-A-TG-AAAT---GTTTCAA--AT---GAT----AA--TTT-A---T-AAGT--TTAC-------------------CATTT--------C--------------CAAGGANAAAA-GTTTTCTTATCAGTTATAACAACATCGAATCGCAAAAGTT--GTCATTCAA--CCANNATTGCACATC-CTTAAAA----A--T-ACTAA-CTTTTT-CACAGTCATGCA-TAATGTGTT-CTAATGACTCCCCCC---TCTCTCTTCTAAACAGAAAAGGA-CATAGATCGTTATCTGATTTCCT-TAAT-A--TTTTCA-AAAA--TGNTA-TTTGTAG-TTAAAATTTT--ATGGTTTATTCGATACT-----------ACNAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATTCCTTTCCACTCTTTCTTGAGATGATCTCAAATTNATCATCCCATNTTTT
gi|1 : TTTTTCT-TTT-C---AGTTT----ACCAC-ATTTATTCAGGTT-ATA-T--T--TC-AGTCA----GGATT-TTA-CAA-TTGA-----------CCCTT-A-CA--CCCAGACCT--ACC---A--GGGGGTA---AGGT-ATAACGTA-TAATA-TT-ACGCT-----------------AAACA-C-------C--TTCACACA-------GG-ACAG-ACAATTCCACT--CTG-AAAAAA--GGA--G--AGAAG--TAA-AAG--G-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-T-------GGT-TTCAAAAC----T-------A-TAC--AAATAA-CA--CAAA-TTGTGTA-TTTA-ATAC-A-T-GTCAAGGTTGT-TACT-A-AA--GATAC-ATCATTTAAA-ATA--C-AT--ACAG---TACATAT-GCTGCTGA-GTG-GT-TAAGAC-A-G--TTAACACACTCTTATTTACTT-CATTTATAGTTTCAGTTTA-TGAAGA----GCA-T----AC--TAA-ATTACA-CT-TATATA-ACAAATATATGTGTTACTGTACAA-CTA--AGGGAGAAAAAAAAAAAACTTTTTC-AGATA--CTTATGAAA-TTAT-ACTTG-AGTTT-CAAAG-ATTCA-A-ATAATTTCCA-TTTCTTTTCAAACTGATTTTGTACAATT-ATTTT--TCCATGCCAA-TTTG-T-TTT-C-T--A---C-T-T-GT-AAA-AAGT-TAATCCAGAAAATTT-TCAATC-TA---TTCA---ATGATAGACAATTT-CC--T----TTACATTTTGCAAAATA--T-A-TG-AAAT---GTTTCAA--ATTTTGATT---AA--TTTCA---T-AAGTCGTTACATTT---------------CACTTTCTGAACAC--------------CAAGGATAAAT-GTTTTCTT-TCAGTTCTAATA-C-TTGAATTGTAAAAATTC-ATCA--CAAA-CCAAGATAGCACATT-CTTAAAATCTAA--TTACTAA-CTTTTTTCACAGTCATGCA-TAACATGTT-TAAATGACTCTTCTC---TCTCT-TTCTAAACAGAAAGGGA-CATAGATCGTTATCTGATTTTCT-TAAT-ACGTTTTCA-AAAAAATGTTA-TTTGTAGATTAAAATTTTTGATGGTTTATTCGATACT-----------GTAAACCATTGTAATTTGCTATCTTTTGTATTC-TTAAAAAACATTTTT-ATGAATACTTTTCAACTCTTTCTTGAGATGATTTCAAATTTATTATCCCATTTTTT
gi|10 : ACAGTCATGCA-TAATGTGTT-CTAATGACCCCCCCCCCTTCTCTCTTCTAAAAATAAAA--A-CATAGATCGTTGTCGTATAT--T-TAATCA--TTTTCA-TAAA---GGTA-TTCGTAG-TTAAAATATT--ATGATTTATTCGATAC------------ACCAACCGATGTAATTTGCTATCTTTAGTATTC-TTAAAAAATATATTT-ATGAATTC--TTCCACTCTT
gi|11 : TG-AATT---AAAGTATGTA-ATATAATT---A-TTT-CTTT---ACTG--TTTGCACAATT-ATTTTCTTCCATG--AG-TTTT-T-TTT-C-T--A---C-T-TTGT-ATG-CA-T-TATTCCAGATAACTT-TAAATT-AA---TTC----ATGATAGACAAGTT-CCTTT----T-ACATTTTGTAAACTA--T-ATTG-AAAT---GTTTCAA--AT---GAT----AA--T
gi|12 : gttaTGGAC-TGT----GTACTTTGG-CT----G-GGT-TTCAAAAA----T-------A-TAC--AAATAG-CA--CAA----------------------T-GACAAGGTTGT-TGCT-ACAA--GATAC-AACATTTAAACATA--C---------------ATAT-ACTACTGA-GTG-AT-TAAGGC-A-T--TTAACACATTCTTGT--ACTT-TATTCA-AATTAAAG-TTA-TGAAGAGCTTGCATT----AC--TAA-ATTATA-CT-T-TATA-ACAAATACcatagttctaacctt
gi|13 : TATTCACATA-ATAAT--TAAT--AGTCA----GGGTT-TTGGCAT-GCG--------------CTT-A-CAAACCC--ACCTG-TCT---T--GGGGATA-CAGAGT-ATT--TTA-TCT-A-CC-ATTTACT--C---------AC-ACATG-C-------A--CTCCAATG-------GG-------------CACT--------CAAA--GG---A--AGAGGGTTAAGAAA--G-A-GATAAA-A
gi|14 : aTTTTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-C-AACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATAA-GTA-TAA-A-TT-ACTCTCT--C---------AC-ACACA-CACATTAAA--TTCACACA--------G-ACAG-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AGG--A-A-Gtaccgtctggctaatcatctgttcaagatgatgtatac
gi|15 : CTCTTGT--ACTT-CATTT-TAATTTCAGTT-A-TGAAGA----GCA-T----AC--TAA-ATTACA-CT-T-TATG-ACAAATACATGTAT-A-TGTACAA-CTA--AGGGG--------AAAAACTTTTCA-AGATA--CTTATGAAA-TCAT-GCTTG-AGTTTTCAAAG-ATTCA-A-ATAATT
gi|16 : A-TTTGTAG-TTAAAACTTT--AGGATTTATTCGATA-----------------ATCATTGTGAGTTGCTATGTTTTGTATTCATTAAAA--CATTTTTTATGAATTCCTCTCCACTTCTTCTTGAGAT-ATCTCAAATTGATCATCCCATGTTTT
gi|17 : GTAT-A-TGTACAA-CTA--AGGGGGAAAAAAACAA--CTTTTCA-AGATA--CTTCTGAAA-TTAT-ACTTG-AGTTTTTAAAG-ATTCA-A-ATAATTTCCATTTT-TTTTCAAACTGA-TTTGTACAATT-ATT
gi|18 : A-TTTATTTTCAAACTGATTT-GCCTAATT-ATTTT--TCCTTGC-AGCTTCT-T-TTT-C-T--A---CTT-T-GT-ATG-CA-T-TATTCCA
gi|2 : agtttaagttatgaattaagagcatgcaatactacattTTTTTTT-TTTAC---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCAC---GGATT-T-A-CATGATGA-----------CCCTTGA-CAACCCAA-ACCTG-ACC---A--GGG---A-CAGGG--ATAA-GTG--AA-A-TC-ACTCTCT--CTGCACACACAC-ACACA-C-------A--TCCACACA-------GA-CCAGGACAG-TTCACT--CTG-AACAAAAGGGA--A--AGAAG--AAA-AGG--A-A-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----GCGGT-TTCAAAACG---T-------AACAC--AACTAAACA--CAAAAT-GTGTA-TTCA-ATACCAATTGGCAAGTATGT--ACT-A-AAAAGATACCAT-ATTTAAACATA--CCAT--ACAG---TACATAT-GCTGCTGACGTG-GTCTAAGAC-AAG--TTAACTCACTCTTGT--ACTT-CATCTATAGCTT-AGCTTA-TGAAGA----GCA-T----ACC-TAA-ATTACAACT-T-TATACACAAATATATGTGTCA-TGTACAAACTA--AGGGG-AGACAAAAAAAACTCTTTC-AAGTA--CTTATGAAAATTAT-ACTTG-AGTTT-CAAAC-ACTCACA-ATAACT-CCA-TTC-TTT-CAAACTGATCTTGTACAATTCATTT----CCATGC-AA-TT-G-T-TTT-C-CTGA---C-T-TTGTTAAA-CA-TCTAATCCAGGAAAATTGTAAATCATAACTTCCA---A--ATAGACCATTTTCC--T----T-ACATTTTGTAAAAAA--TCA-TGCAAAT---GTTTCAATGAT---AATTTTAAAGTTTT-A---C-CATT--TCACTTTCAACACGACACCCCGCCATTT--------CTGAACACC------CAAG--CAAAATGTTTTCTTATCAGTCATAA--ATATTGAACAGCTAAAATTAGGTCACGCAAAACCAAGATTGC-CATTTCTTAAAA----AGAT-ACTAAACTTTTT-CACAGTCATGCATTAATATGTTCCTAATGACT-----C---TCTCTCTTCTTAACAGGAAAGAACCATAGATCATTATCTGATTTCTTGTAAT----TTGGCACAAAA--TGCTACTTTGTAG-TTTAA
gi|20 : attCTG-ACC---A--GGGG-TA-CAGGGT-TTGA-GTA-TAA-G-TT-ACTCTCT--C---------AC-ACACA-C-------A--TTCACACA--------G-ATAG-GCA--TTCACT--ATG-AACGAA--GGA--T--AGAAG--TAA-AAG--G-AGGAAGAA-AGTg
gi|21 : T-TAAT-AA-TTTTCA-AAAA--TG-TA-TTTGTAG-TTCATATTTT--ATGGTTTATTCGATACTGTTTAATTTACACTAACCGTTGTAATTTGCTATCTTTTGTATTC-TTAAAA
gi|22 : TTTTGTAAAATA--T-A-TG-AAAT---ATTTCAA--AT---GAT----AA--TTT-A---TGAAGT--TTAC-------------------CATTT--------CAATTTCTGAACACTTAAAGATAAAA-GTTTTCTTATCAGTTATAATA
gi|23 : TGT--ACTT-CATTTCTGGTTTAAG-TTA-GGAGGA----GCA------ACAACAA-AATATA-CT-A-AACA-ACAAATACATGTAT-A-TGTACAA-CTAATATAAGGAAGAAAtt
gi|24 : tgTT-A---AGTTT----ACACC-ATTTATTCCGGGT-ATA-T--C--CC-AGACA----GGATT-TTA-CAT-AAAA-----------CCCTC-A-C-AACCCA-ACCTG-ACCATTA--GTGGATA-CAGGGt
gi|25 : TCA----AGATT-TTA--AC-GTG------------CCCTT-A-CAAACT---GTCTG-ACA---A--GGGGGTA-CA
gi|26 : aatattgcacatacaataT-TCC-C---AGTTT----ACAAC-ATTTATTCAG------------------------------T-TTA-CAT-ACGA-----------CCCTT-A-CAA-CCCA-ACCTG-AAC---A--GGGGGTA-CAAGGT-ATGA-ATA-caggtttgttttttatctaccattta
gi|27 : ACAATT-ATTTT--TCCATGC-AC-TTTG-T-TTT-TAT--A---C-TCT-GT-ATG-CA-T-TAGTCCAGATAATTT-TAAATC-TA---TTCA---
gi|28 : TTTGTACAATT-ATTTT--TCTATAT-AG-TCTG-TGTTT-C-T--ATACT-T-T-GT-ATA-CA-T-TAGTCCAGA
gi|29 : aTTTTTT-TTT-T---AGTTT----ACAAG-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-Ta
gi|3 : TTTTTTTATTTAC---AGTTTCT--ACAACCATCTTTTCAGGTTTATA-T--T--T--AGTCA----GGATTGTTAACAT-ATGA-----------CCCTT-AGCAAAGCCC-ACCTGGACC---AC-GGAGGTA-CAGG-T-ATAA-GTG-TAA-AATT-ACTCTCT--C---------AC-A-A-----------A--TCCACACA--------G-ACAG-TCA--TTCA-T--CTGAAACAAA--GGA--A--AGAAG--TAA-AAG--GAA-GAAGAA-GTTCGGACTTGT----GTA-TCTGG-CT----G-GG--TTCAAAAC----T-------A--A---AAATAA-CA--CAAA-T-GTGTA-TATGTATAC-AAT-GTCAAGGTTGT-TACT-A-AA--GATAC-AT-ATTAAAACATAGCC-AT--ACATGTGTACCTATCGCTGCTGA--TGAGT-TTAGAC-A-AGTTTAAC-CACTCTTGT--ACTT-CA-TTATAGCTATAGGTTATTGAAGA----G-A-T----AC--TAA-ATTA-A-CTGT-TATA-ACAAATATATGTGT-A-TGTACAA-CTA--GGGAGG--AAAAAAAAAACTTTTTC-AGATAGCCCTATGAAA--TATAACTTGAAGTTTTCAAAG-ACTCA-A-AT-ATTTCCA-
gi|30 : aatt--GGGGGTA-CAGGGT-TTGA-GTA-TAA-A-TT-ACTCTCT--C---------AC-ACACA-C-------A--CTC
gi|31 : TA--C-ATGTACA----TACATAT-ACTACTGA-GTG-GT-TAAGAC-A-G--TT
gi|4 : TTTTTC-CTT-C---AGTAT----ACAAC-ATTTATTCA--TT-ATA-T--C--T--AGT------AGATT-TAA-CAT-AATA-----------CCCTT-A-CAA--TCA-ACC---ACC---A--GGTG-TA-CAGGATTGGGA-GTA-TTA-A-AT-ACTCTCT--C---------ATTACACA-C----------TTCACACA-------GG-AC-G-ACA--TTCACT--CTG-AACAAA--CGA--T--AGAAG--TAA-AGGATG-A-GGAAAA-AGTT--AC-TGT----GTACTCCGG-CT----C-GGTCTTCAAAAC----T-------A------AAAAAA-CA--AAAA-T----TAGTTTA-ATAC-AAT-GTCAG---TGTATACT-A-AA---ATAC-ATCATTCAAACAT------------------CATAT-ACTAC-GA-GT--GT-TAA-ACAA-G--TT-ACACA--CTTGT--GCTTAAATTCATTCTATCAGTTAT-TGAAG-----GCA-TGCAAAC--TAAGATAACA-CT-T--------AAACA-------------GCAA-CTA--AGGAGAAAAAAAAA--------TTCAAGATA--C-TAC-AAA-TAGT-AC-TG-AGTTTTCAAAG-ATTCA-A-A
gi|5 : aTTTTTT-TTT-GTAAAGTTTCACAACAGC-ATTTATTTAAATT-ATA-TACT--TGGAGTCAAGTGAGATT-----CAT-ATAATAATTAAAGTCTCTTT-A-CAAACCCA-CTCTG-ACC---AAGAGGGGTAGCAGGGT-TTGAGGTATTAA-A-TTAACTCTCT--A---------AC-ACACAGC-------AACTTCACAAA-------AGTACAGTACA--TCAGCTCACTG-AACAAA--GGAATA--AGAAG--TAA-AAG--G-ACGAAGAAGAGTCGGAC-TGTGGCAGCAATCCGGACTATGGA-GGT-TTCAAAAA----T-------A-TAC--attc
gi|6 : -ACTTG-AGTTTTCAATG-TTTCA-A-ATAATTTCCA-T---------------CTTTATATACTT-GTTTT--CCC-TGC-AG-TTTGTT-TTT-C-T--A---CTT-T-GT-ATA-CA-A-TAATCCAGATAACTT-TAAATT-TA---TTCA---ATGATAGACAATTT-CC--TAAAAT-ACATTTTGTAAAGTACCT-A-T--ATAT---GTCTCAA--GT---GAT----AA--TTA-AC--T-AAGT--TTAT-------------------CATTT--------C--------------CAAGGAGAAAA-GTTTTCTTTTCAATTATAACAACATCAAAT-GCAAAAGTT---TCATTC-A--CCATTATTGCACATC-CTTAA------------------TTTTT-CAT--TCAAGCA-TAATGTGcattatagactactccatagtacatggttcaactgttgcaattccaggtacactcaaaaatgtat
gi|7 : TTTTT-TTT-C---AGTTT----ACAAC-ATTTATTCAGGTT-ATA-T--T--T--AGTCA----GGATT-TTA-CAT-ATGA-----------CCCTT-A-C-AACCCA-ACCTG-ACC---A--GGGGGTA-CAGGGT-ATAA-GTA-TAA-A-TT-ACTCTCTCAC---------AC-ACACA-C-------A--TTCACACA--------G-ACAG-ACA--TTCACT--CTG-AACAAA--GGA--A--AGAAG--TAA-AAG--GAA-GAAGAA-AGTTGGAC-TGT----GTACTCTGG-CT----G-GGT-TTCAAAACGAAAT-------A-TATCGAAACAA-AA--CAAA-attt
gi|8 : TTTATATACTT-GTTTT--CCC-TGC-AG-TTTG-T-TTTTC-T--A---C-T-T-GT-GTAACA-A--AATCCA-ATAACTT-TAATTT-TAA--TTCATGAATGAT---CAATTT-CC--TAAAAT-ACATTTTGTAAAGTA--C-C-TG-ATATATAGTCTCAA--GT---GAT----AA--TTT-AACTC-AAGT--TTAT-------------------CATTT--------C--------------CAAGGA-AAAA-GTTTTCT--TCAATT-TAACAACATCAAATC---AAAGTT---TCATTC-A--CCATTATTGCACATC-CTTAacggaacattttacaaccaaactttttca
gi|9 : CA-ACCTG-ATC---A--GAAGGTA------T-TTAG-GTA-T-----TT--CTCTTT--C---------AC-ACACA-C-------A--CACACACATTCACATGG-ACAG-ACA--CTCATT--CTG-AGCAAA----A--ATTAGAAG--TAA-AAG--G-AGGAAGAA-AGTTGGAC-TAC----ACAGTCTGG-CT----A-GGT-TTTAAAAA----TATCATGAA-TAC--AAATAT-CAATCAGA-T-GTGTG-T-----TGC-AAT-GCCAAGGCTGT-TACTAA-AA--GAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATCTACCATTTACTCACACATGCACTCCAATAGGCACTCAAAGGAAGAGGGTTAAGAAAGGGATAAAATACCGTCTGCATGCTAATCATCTGTTCAAGATGATGTATACA