lowQualScore : 11111111111111111111111111111111111111111111111111111111111 11111111111111111 11111 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333333333333333333333333333333333333333333333333 111 111 11111 33333333 22 555555 1 2222222 111 1 1111 11 22 1 111 1 00000000000000000 1111111 22 77777777777777 1 1 22 22 00000 5555 1 1 55 1 1 1 1 1 11 4 1 1 11 444444444444444444444444444444 2222 111 77777777777777 33333 888888888888888888888888888888888888888888888888888888888888888 3333 4444444 1 1 1 2222 1 1 11 444
lowQualScore : 55555555555555555555555555555555555555555555555555555555555 888 2 555 3 3 77777 1 66666666 44 4 0 3 444444 0 2 0 4 6666666 2 222 0 2 7777 6 6 33 00 7 99 5 9 2 3 666 0 6 6 33333333333333333 7 6 1111111 6 22 4 33333333333333 88 5 6 6 5 11 11 00000 6666 5 6 7 55 5 6 7 5 6 5 6 6 6 7 22 0 5 7 22 77 6 99 1 666666666666666666666666666666 1111 6 000 55555555555555 6 6 6 33333 6 000000000000000000000000000000000000000000000000000000000000000 3 6666 0000000 4 0 2 2 4 4 5 7 7777 7 5 22 777
lowQualScore : ........................................................... ... . ... . . ..... . ........ .. . . . ...... . . . . ....... . ... . . .... . . .. .. . .. . . . . ... . . . ................. . . ....... . .. . .............. .. . . . . .. .. ..... .... . . . .. . . . . . . . . . . .. . . . .. .. . .. . .............................. .... . ... .............. . . . ..... . ............................................................... . .... ....... . . . . . . . . .... . . .. ...
lowQualScore : 77777777777777777777777777777777777777777777777777777777777 000 2 222 2 5 88888 2 22222222 55 2 7 0 555555 5 2 8 2 8888888 0 222 0 0 5555 0 7 33 77 0 88 0 8 8 0 888 8 0 7 00000000000000000 3 7 3333333 7 00 0 55555555555555 55 0 0 0 0 00 00 00000 0000 0 0 0 00 0 0 0 0 0 0 0 0 0 0 00 0 0 0 00 00 0 22 2 000000000000000000000000000000 0000 0 555 00000000000000 0 0 0 00000 0 000000000000000000000000000000000000000000000000000000000000000 0 5555 0000000 0 5 5 5 0 0 0 0 0000 0 0 00 000
consensus : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CA-TGG-GATAAGCTCCCATT-GTCTATAAAATGCTCCNCATGGCGTGCGCCTCAAATAGCCTCTGAC---AACCGAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGNATATAAGCCNGGCGGAACTGCTACTACCGACG---GGAGAAGG-GGTG-AAGGCGGATCAACTGGCGCCTTAAAACCAG-TGCTTCGGGCAGATGGGGCTCATCAG-T-CTGGAGGGCAGCTCATCTAGGAGAAGGAAA---CT------AAA-CCTCCGCTGCCTTGCGGC-ATACCCACCCANNGGGANGGCTTTAGGGTAAACCNGAGNAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAAGGAAACTCCAAAATCAAACCATCTCTATTCGCAGTTATTAGGGGTTAGTGTACTGTAGGGCCAACAACCCTACCCNCCAAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAANNAGCAAATGAGATGAGAAAGCGCNGATCAANGTCCTNGCNNACTTGGNNTAAGTGAGNNNAGATGGAATCGNGGACG-GCCAGTTGAGATTAGCATCAGGAGAGA--CCGTCATTTACTCTGGACACGAAGACCTGATTATGATCACNCCCNTACGGAAGNGGTNNNNCTTNATGATATCCCCGGAGGCACCANNGTGCNCTNATNGNATGGGAACCNGTCNCATCACGACTCATATCATCAAGGTTCAACTCTCAAA
Reference ( gi|1 ) : GTGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCCCCCATT-GTCTATAAAATGCTTCTCATGACGTGCACTTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-GGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGTTATTACCGAAA---GCAGAGGG-GATG-AAGGCGGGTTAAATAGCGCCTGAAACCCAG-TGCTTTGAATAGCTGGGACTCGTTAA-T-CTGAGGGACAGCTCATCTAAGAGAAGGAAAATTCTGATTCCAAA-CCTCTGCTGCCTTGCAGCCATACCCACTTATGGAAAAGGC--TAGG-------TGAAGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGACATTTCCAAATCAAACCATCTCTCCTCGAGGTTATTAGGGGTTAGTGTA-----GGACCAACAACCCTACCTG--AAAAAAAAGTCAAGTTATAGAAGCATCTACGTCAAACCAAAATCAACATAACCTGGGCCATATTGGGCCTACTTCAAGGGGAACTATGACGACGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGTTGATTCCCTTTCTGACACCCAGGAAACCTGCCAGACTTGCTACTTTGAATGTAAGATCAATGTATAAAGCAAAAAGAACAGCACAAGTAGCAAATGAGATG---AAGCATTG--CAACATC--TGTTTACTTGGACTAAGCGAGACAAGATGG--TTGCAGACATGACAGCTGAGACTGGTCTTCGGAGAAATGCTGT--TGTATTCAGGACAC----ATC-GAGGGGGAGC-CCCCCATA-GGAAGGCG-AAGGCTTTATGCTATTCTTGGAGGTA-CAGCGTGCTCTTATCGGATGGGAACCTGTCACCTCTCGGATAATAACAGCAAAATTCAACAC-CAAAAAAAAACAACAACAAAAAACAACAAGATCAACCTGAATATATCCAGTGTTATGCCCCTACCAACGACGCTGATGATGTGAAGAAAGCTGCCGTTCACCAACAACTGCAGGCAGTTCTTGACAAAACAGGAAAGAAAGACATGACAATA
gi|9 : GTTCCAAGGTTGTCATAGC-C----------------GGGG---------TGG---CATTGGTAATAAACTCCCATTTGTCTATAAAATGCT---CAGGGCGTGCACCTCAAATAGCCTCTGACAAAAACCAAAGACCATGTGCACAGCTCCT-AGCTTGCTTGTGCGG
gi|7 : taactgaattattgGTTTCAAGGTTGTCAAAGC-CGGGGGTGGTGGTGGGAGGGGGGGGGGGAATGGGGGCAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCAAGCGCCTCAAATAACCTCTGAC---A--CGAAGTC--------CAGCTCCTAAGCCTGCTTG
gi|8 : caactgatttctgGTTCCAAGGTTGTCATAGCTC---------------AGGGA---------TGG---T----------------------TCTATAAAGTGCTCCCGATGACATGT----------GTCTC--------ACCTAAGTC--------CAGCTCCT--GCCTGCCCGCGTGGTTTAGATATAAGCCGGGCGGAACTGCTTCTACTGACA---GGAGGAGG-GGTG-TAGGCGGATCA
gi|6 : ggaggATTCTCCACGTGGCGTGTGCCTCAAATAGCCACTGTC---AACCAAAGTC--------AACCTTCT-AGTCTGCTAGCATGGCTTGTA------CCTAGCGGAACTGCTATTGCCGATG---GGAGAATG-GGCG-ACGGCGGGTTACATGGCGCCTGAAAACCGG----TTTGGGTAGATGGGGCTCATCAG-T-CTGAGG
gi|10 : GCTACTACTGACA---GGAGAAGG-TGTG-AAGGCGGACC-ACTGGCGCCTTAAAACCAGTTGCTTCGGGCAGGTGGGGCTCGTCAGCT-TTGGAGGGCAGTTCA
gi|5 : catggtctgcacccactctggcattgaattcacccaagagaTTATTCCAGAAAAAGGAAAAGGGAGGTGGAAGGCGGATCCACTGGCGCCTTAAAC--AG-TGCTC-GAA--GGTGGG--CCAATAA---CTGGATG-CAGTTCACCTAGGAGAAG-AAAACTCTGATTTCAAAACCTCCGC-G-CTTGCGGCAACA-TCACTCAACGGAATGGCTTTAGAGTAAACCTGAGGAAAAAT
gi|11 : GCTTTGGGCAGATGGGGCTCATCAA-TGTTGGATGGCACCTCATCTAGGGGAGAGAAA---CT----------CCGCTGGTGCCT-------ATACCCACCTACAGAGAAGGC--TAAG-------GGAGTAAAccggagttggagtcccgtaggcg
gi|13 : GAGTAAATGGGACTCATCAG-T-CTGAGGGACAGCTCGTCTTGGAGAAGGA-------------AAA-CCTCTGCTGCCTTGCAGCCATACCCA
gi|2 : tgcgttgtcaAGGAAGGAAACTCCAAAATCAAACCATCTCTATTCGCAGTTATTAGGGGTTAGTGTACTGTAGGATCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAATGAACAAA
gi|4 : GGCCAACAACCCTACCCCCCAAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAATGAACAAAg
gi|12 : AAGCAAGCAAAACAGCACAAGCAGCTCTTGAGATG---AAGCGCTA--TAATATC--AGCATACTTGGTGTAAGTGAGTGTAGATGG--TCAGGGACA
gi|3 : CAACACAAGTGGCAAGTGAAATGAGAAAGTACAGATCAAGGTCCTTGTTAA--TGGATT-AGTGAAACAAGATGGAATGGTAG-CG-GCCAGTTGAGATTAGCATCAGGAGAGA--CCGTCATTTACTCTGGACACGAAGACCTGATTATGATCACACCCA----GAAGTAGTATTTCTTTATG----TCCCAGAAGCACCAGA--GCACTGATGGCATGGGAACCAGTCTCATCACGACTCATATCATCAAGGTTCAACTCTCAAA
gi|15 : atC-CCCCCCTACGGAAGGGG-TAGGCTTGATGATATCTTTGGAGATA-TATTGTGCTCTCATCGGATGGGAACCTGTCAtgaagaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): CTTCTACTGACAGGAGGAGGGGTGTAGGCGGATCACTGGCACTGGTGCTCTTCGGCCTTGGAGGGCAGTTCACTTCAGG
Unaligned ( gi|16 ): CCAGTTGCTCTGGGCAGGTGGGGCTCGTAAGCCTTGGATGG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1 00000000000000000000000000000000000000000000 1 11111 22222222 11 222 1 11 111111 88888888888888888888888 11111 1 222 2222222222 5555555555555555555555555555555555555555555555555555555555 22222 222 1 1 222 22222 333 33 2 22 11 2222 1 1 2222 22222 1 11 1
lowQualScore : 0 11111111111111111111111111111111111111111111 0 0 0 3 3 0 1 55555 4 99999999 11 1 1 666 1 1 2 99 6 88 5 0 44 66 33 2 0 222222 1 6 00000000000000000000000 2 3 2 3 66666 3 0 11 22 11 1 222 7777777777 1 8888888888888888888888888888888888888888888888888888888888 3 3 3 2 66666 0 222 3 3 22 999 0 00000 11 111 222 6 22 7 333 00 3 11 7 0 2 3 3 77 88 3 4 3333 5 7777 3 5 1 2222 44 44444 1 5 0 11 0 88 888 1 1 1 1 1 1 3 4 2 2 4 3 4 5
lowQualScore : . ............................................ . . . . . . . ..... . ........ .. . . ... . . . .. . .. . . .. .. .. . . ...... . . ....................... . . . . ..... . . .. .. .. . ... .......... . .......................................................... . . . . ..... . ... . . .. ... . ..... .. ... ... . .. . ... .. . .. . . . . . .. .. . . .... . .... . . . .... .. ..... . . . .. . .. ... . . . . . . . . . . . . . .
lowQualScore : 0 22222222222222222222222222222222222222222222 2 8 0 2 8 8 0 44444 6 00000000 88 4 0 777 0 4 8 22 7 88 4 4 66 33 66 6 2 000000 7 7 55555555555555555555555 0 2 5 2 88888 2 0 33 00 33 0 333 0000000000 0 0000000000000000000000000000000000000000000000000000000000 0 0 0 5 55555 7 777 3 3 00 333 7 77777 77 333 777 7 00 3 000 77 7 77 3 0 5 0 0 55 00 0 0 5555 5 5555 0 5 0 3333 77 33333 0 3 7 33 7 77 777 0 0 0 0 0 0 0 0 5 5 0 0 0 5
consensus : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGG-ATAAGCTCCCA-TTGTCTATAAAATGCTCCTCATGGCGTGCGCCTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGCTACTACCGACAGGAGAAGGG--GTG-AAGGCGGATCAACTGGCGCCTNAAAACCAGT-GCTTCGGGCAGGTGGGGCTCGTCAG-T-C-TGGAGGGCAGCTCA-TCTAGGAGAAGGAAA---------CT---------AAACCTCTGCTGCCTTGCGG-C-ATAC-CCACTTACGGAAAAGGCTT-AGG--GTAAACCTGAGGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGANACTCCNAAATCAAACCATCTCTNCTCGCGGTTATTAGGGGTTAGTGTACTGTAGGACCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGACGCCGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCGCCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAAGNAGCAAATGAGATGA--AAGCGCTGATCAANATC--TGTTTACTTGGANTAAGCGAGACAAGATGG--TCGNAGACGTGNCAGCTGAGACTGGCNTCNGGAGAGATGCCGTCATNTACTCNGGACACGAAGACCTGANNGNGANCACCCCCATA-GGAAGGNGTANG-CTTTATG-TATTCTCGGAGGTACCAGCGTGCTCTNATCGGATGGGAACCTGTCNCNTCNCGGNTNATANCANCAAGGTTCAACNCTCAAA
Reference ( family-3900 ) : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CA-TGGG--ATAAGCTCCCA-TTGTCTATAAAATGCTCCNCATGGCGTGCGCCTCAAATAGCCTCTGAC---AACCGAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGNATATAAGCCNGGCGGAACTGCTACTACCGACGGGAGAAGGG--GTG-AAGGCGGATCAACTGGCGCCTTAAAACCAGT-GCTTCGGGCAGATGGGGCTCATCAG-T-C-TGGAGGGCAGCTCA-TCTAGGAGAAGGAAA---------CT---------AAACCTCCGCTGCCTTGCGG-C-ATAC-CCACCCANNGGGANGGCTTTAGG--GTAAACCNGAGNAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAAGGAAACTCCAAAATCAAACCATCTCTATTCGCAGTTATTAGGGGTTAGTGTACTGTAGGGCCAACAACCCTACCCNCCAAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAANNAGCAAATGAGATGAGAAAGCGCNGATCAANGTCCTNGCNNACTTGGNNTAAGTGAGNNNAGATGGAATCGNGGACG-GCCAGTTGAGATTAGCATCAGGAGAGA--CCGTCATTTACTCTGGACACGAAGACCTGATTATGATCACNCCCNTACGGAAGNGGTNNNNCTTNATGATATCCCCGGAGGCACCANNGTGCNCTNATNGNATGGGAACCNGTCNCATCACGACTCATATCATCAAGGTTCAACTCTCAAA
gi|1 : GTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGG-ATAAGCCCCCA-TTGTCTATAAAATGCTTCTCATGACGTGCACTTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-GGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGTTATTACCGAAAGCAGAGGGG--ATG-AAGGCGGGTTAAATAGCGCCTGAAACCCAGT-GCTTTGAATAGCTGGGACTCGTTAA-T-C-TGAGGGACAGCTCA-TCTAAGAGAAGGAAAATTCTGATTCC---------AAACCTCTGCTGCCTTGCAG-CCATAC-CCACTTATGGAAAAGGCT--AGG---------TGAAGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGACATTTCCAAATCAAACCATCTCTCCTCGAGGTTATTAGGGGTTAGTGTA-----GGACCAACAACCCTACCTG--AAAAAAAAGTCAAGTTATAGAAGCATCTACGTCAAACCAAAATCAACATAACCTGGGCCATATTGGGCCTACTTCAAGGGGAACTATGACGACGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGTTGATTCCCTTTCTGACACCCAGGAAACCTGCCAGACTTGCTACTTTGAATGTAAGATCAATGTATAAAGCAAAAAGAACAGCACAAGTAGCAAATGAGATG---AAGCATTG--CAACATC--TGTTTACTTGGACTAAGCGAGACAAGATGG--TTGCAGACATGACAGCTGAGACTGGTCTTCGGAGAAATGCTGT--TGTATTCAGGACAC----ATC-GAGGGGGAGC-CCCCCATA-GGAAGGCG-AAGGCTTTATGCTATTCTTGGAGGTA-CAGCGTGCTCTTATCGGATGGGAACCTGTCACCTCTCGGATAATAACAGCAAAATTCAACAC-CAAA
gi|10 : gtGCTACTACTGACAGGAGAAGGT--GTG-AAGGCGGACCA-CTGGCGCCTTAAAACCAGTTGCTTCGGGCAGGTGGGGCTCGTCAGCT-T-TGGAGGGCAGTTCA-aaaaaacaacaacaaaaaacaacaagatcaacctgaatatatccagtgttatgcccctaccaacgacgctgatgatgtgaagaaagctgccgttcaccaacaactgcaggcagttcttgacaaaacaggaaagaaagacatgacaata
gi|11 : catggtctgcacccactctggcattgaattcacccaagaga-GCTTTGGGCAGATGGGGCTCATCAA-TGT-TGGATGGCACCTCA-TCTAGGGGAGAGAAA---------CT------------CCGCTGGTGCCT--------ATAC-CCACCTACAGAGAAGGC-TAAGGGAGTAAA
gi|12 : AAGCAAGCAAAACAGCACAAGCAGCTCTTGAGATGA---AGCGCT-AT-AATATC--AGCATACTTGGTGTAAGTGAGTGTAGATGG--TCAGGGAC
gi|13 : GAGTAAATGGGACTCATCAG-T-C-TGAGGGACAGCTCG-TCTTGGAGAAGGA----------------------AAACCTCTGCTGCCTTGCAGCC-ATAC-CCAa
gi|14 : tgcgttgtcaCTTCTACTGACAGGAGGAGGG--GTG-TAGGCGGATC-ACTGGCAC-------------------------TGGTGCTCTTCGG-C-CTTGGAGGGCAGTTCACTTCAGG
gi|15 : CCCCCCTACGGAAGGGGTAGG-CTTGATGATATCTTTGGAGATAT-ATTGTGCTCTCATCGGATGGGAACCTGTC
gi|16 : cCCAGTTGCTCTGGGCAGGTGGGGCTCGTAAG-C-CTTGGATGGagc
gi|2 : AGGAAGGAAACTCCAAAATCAAACCATCTCTATTCGCAGTTATTAGGGGTTAGTGTACTGTAGGATCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAATGAACAAA
gi|3 : CAACACAAGTGGCAAGTGAAATGAGAAAGTACAGATCAAGGTCCTTGTTAA--TGGATTA-GTGAAACAAGATGGAATGGTAG-CG-GCCAGTTGAGATTAGCATCAGGAGAGA--CCGTCATTTACTCTGGACACGAAGACCTGATTATGATCACACCCA----GAAGTAGTATTTCTTTATG----TCCCAGAAGCACCAGA--GCACTGATGGCATGGGAACCAGTCTCATCACGACTCATATCATCAAGGTTCAACTCTCAAAg
gi|4 : atGGCCAACAACCCTACCCCCCAAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAATGAACAAAtgaagaa
gi|5 : GGAAAAGGGAGGTGGAAGGCGGATCCACTGGCGCCTTAAA--CAGT-GCT-CGA--AGGTGGG-CCAATAA----C-TGGATG-CAGTTCA-CCTAGGAGAAGAAAA---------CTCTGATTTCAAAACCTCCGC-GC-TTGCGG-C-A-ACATCACTCAACGGAATGGCTTTAGA--GTAAACCTGAGGAAAAAT
gi|6 : ttattccagaaaaaATTCTCCACGTGGCGTGTGCCTCAAATAGCCACTGTC---AACCAAAGTC--------AACCTTCT-AGTCTGCTAGCATGGCTTGTA------CCTAGCGGAACTGCTATTGCCGATGGGAGAATGG--GCG-ACGGCGGGTTACATGGCGCCTGAAAACCGG----TTTGGGTAGATGGGGCTCATCAG-T-C-T-GAGGccggagttggagtcccgtaggcg
gi|7 : GTTTCAAGGTTGTCAAAGC-CGGGGGTGGTGGTGGGAGGGGGGGGGGGAATGGGGGCAATGGGG-ATAAGCTCCCA-TTGTCTATAAAATGCTCCTCATGGCAAGCGCCTCAAATAACCTCTGAC---A--CGAAGTC--------CAGCTCCTAAGCCTGCTTG
gi|8 : caactgatttctgGTTCCAAGGTTGTCATAGCTC---------------AGGGA---------TGG---T-----------------------TCTATAAAGTGCTCCCGATGACATGTGTCTCA-----CCT-------------AAGTC--------CAGCTCCT--GCCTGCCCGCGTGGTTTAGATATAAGCCGGGCGGAACTGCTTCTACTGACAGGAGGAGGG--GTG-TAGGCGGATCA
gi|9 : ggaggGTTCCAAGGTTGTCATAGC-C----------------GGGG---------TGG---CA-TTGGTAATAAACTCCCATTTGTCTATAAAATGCT---CAGGGCGTGCACCTCAAATAGCCTCTGACAAAAACCAAAGACCATGTGCACAGCTCCT-AGCTTGCTTGTGCGG
Alignments
lowQualScore : 1 66666666666666666666666666666 111111 1 11111 22222222 11 222 1 11 1111 88888888888888888888888 222 1 1 222222222 22222 22 1 1 444 1111 11 11 1 11 11 2222 1 1 111 1 22222 11 1
lowQualScore : 0 99999999999999999999999999999 888888 22 0 0 0 4 0 1 55555 99999999 11 1 444 3 1 99 6 88 3 0 44 66 33 2 0 2 5 5555 1 6 00000000000000000000000 3 2 3 000 3 0 3 7 666666666 1 1 1 2 66666 00 3 0 0 0 0 3 1 222 0 9999 1 88 6 1 7 0 88 3 1 7 5 1 1 1 88 88 1 1 3333 5 22 1 1 5 999 1 1 3 88888 0 88 3 7 1 1 1 1 1 1 1 1 1 5
lowQualScore : . ............................. ...... .. . . . . . . ..... ........ .. . ... . . .. . .. . . .. .. .. . . . . .... . . ....................... . . . ... . . . . ......... . . . . ..... .. . . . . . . . ... . .... . .. . . . . .. . . . . . . . .. .. . . .... . .. . . . ... . . . ..... . .. . . . . . . . . . . . .
lowQualScore : 0 88888888888888888888888888888 222222 88 2 8 0 0 8 0 44444 00000000 88 4 333 7 4 22 7 88 8 4 66 33 66 2 2 2 0 9999 7 7 55555555555555555555555 2 5 2 555 2 0 3 3 000000000 0 0 0 5 55555 00 3 7 7 7 7 3 0 000 7 7777 0 33 7 0 3 7 33 7 0 3 5 0 0 0 00 00 0 0 5555 5 00 0 0 5 777 0 0 3 00000 7 77 7 3 0 0 0 0 0 0 0 0 0 5
consensus : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCGTGCGCCTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGCTACTACCGACAGGAGAAGGG--GTG-AAGGCGGATCAACTGGCGCCTNAAAACCAGT-GCTTCGGGCAGGTGGGGCTCGTCAG-T--C-TGGAGGGCAGCTCA-TCTAGGAGAAGGAAA---------CT---------AAACCTCTGCTGCCTTGCGGCCATAC-CCACTTA-CGGAAAAGGCTTAGG--GTAAACCTGAGGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGANACTCCNAAATCAAACCATCTCTNCTCGCGGTTATTAGGGGTTAGTGTACTGTAGGACCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGACGCCGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCGCCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAAGNAGCAAATGAGATG---AAGCGCTGATCAANATC--TGTTTACTTGGANTAAGCGAGACAAGATGG--TCGNAGACGTGNCAGCTGAGACTGGCNTCNGGAGAGATGCCGTCATNTACTCNGGACACGAAGACCTGANNGNGANCACCCCCATA-GGAAGGNGTAGG-CTTTATG-TATCCTCGGAGGTACCAGCGTGCTCTNATCGGATGGGAACCTGTCNCNTCNCGGNTNATANCANCAAGGTTCAACNCTCAAA
Reference ( family-3900 ) : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCGTGCGCCTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGCTACTACCGACAGGAGAAGGG--GTG-AAGGCGGATCAACTGGCGCCTNAAAACCAGT-GCTTCGGGCAGGTGGGGCTCGTCAG-T--C-TGGAGGGCAGCTCA-TCTAGGAGAAGGAAA---------CT---------AAACCTCTGCTGCCTTGCGG-CATAC-CCACTTA-CGGAAAAGGCTTAGG--GTAAACCTGAGGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGANACTCCNAAATCAAACCATCTCTNCTCGCGGTTATTAGGGGTTAGTGTACTGTAGGACCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGACGCCGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCGCCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAAGNAGCAAATGAGATGA--AAGCGCTGATCAANATC--TGTTTACTTGGANTAAGCGAGACAAGATGG--TCGNAGACGTGNCAGCTGAGACTGGCNTCNGGAGAGATGCCGTCATNTACTCNGGACACGAAGACCTGANNGNGANCACCCCCATA-GGAAGGNGTANG-CTTTATG-TATTCTCGGAGGTACCAGCGTGCTCTNATCGGATGGGAACCTGTCNCNTCNCGGNTNATANCANCAAGGTTCAACNCTCAAA
gi|1 : GTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCCCCCATT-GTCTATAAAATGCTTCTCATGACGTGCACTTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-GGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGTTATTACCGAAAGCAGAGGGG--ATG-AAGGCGGGTTAAATAGCGCCTGAAACCCAGT-GCTTTGAATAGCTGGGACTCGTTAA-T--C-TGAGGGACAGCTCA-TCTAAGAGAAGGAAAATTCTGATTCC---------AAACCTCTGCTGCCTTGCAGCCATAC-CCACTTA-TGGAAAAGGC-TAGG---------TGAAGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGACATTTCCAAATCAAACCATCTCTCCTCGAGGTTATTAGGGGTTAG-----TGTAGGACCAACAACCCTACCTG--AAAAAAAAGTCAAGTTATAGAAGCATCTACGTCAAACCAAAATCAACATAACCTGGGCCATATTGGGCCTACTTCAAGGGGAACTATGACGACGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGTTGATTCCCTTTCTGACACCCAGGAAACCTGCCAGACTTGCTACTTTGAATGTAAGATCAATGTATAAAGCAAAAAGAACAGCACAAGTAGCAAATGAGATG---AAGCATTG--CAACATC--TGTTTACTTGGACTAAGCGAGACAAGATGG--TTGCAGACATGACAGCTGAGACTGGTCTTCGGAGAAATGCTGT--TGTATTCAGGACAC----ATC-GAGGGGGAGC-CCCCCATA-GGAAGGCGAAGG-CTTTATGCTATTCTTGGAGGTA-CAGCGTGCTCTTATCGGATGGGAACCTGTCACCTCTCGGATAATAACAGCAAAATTCAACAC-CAAA
gi|10 : gtGCTACTACTGACAGGAGAAGGT--GTG-AAGGCGGACCA-CTGGCGCCTTAAAACCAGTTGCTTCGGGCAGGTGGGGCTCGTCAGCT--T-TGGAGGGCAGTTCA-aaaaaacaacaacaaaaaacaacaagatcaacctgaatatatccagtgttatgcccctaccaacgacgctgatgatgtgaagaaagctgccgttcaccaacaactgcaggcagttcttgacaaaacaggaaagaaagacatgacaata
gi|11 : catggtctgcacccactctggcattgaattcacccaagaga-GCTTTGGGCAGATGGGGCTCATCAA-TG-T-TGGATGGCACCTCA-TCTAGGGGAGAGAAA---------CT------------CCGCTGGTGCCT-------ATAC-CCACCTA-CAGAGAAGGCTAAGGGAGTAAA
gi|12 : AAGCAAGCAAAACAGCACAAGCAGCTCTTGAGATG---AAGCGCT-AT-AATATC--AGCATACTTGGTGTAAGTGAGTGTAGATGG--TCAGGGAC
gi|13 : GAGTAAATGGGACTCATCAG-T--C-TGAGGGACAGCTCG-TCTTGGAGAAGGA----------------------AAACCTCTGCTGCCTTGCAGCCATAC-CCAa
gi|14 : tgcgttgtcaCTTCTACTGACAGGAGGAGGG--GTG-TAGGCGGATC-ACTGGCAC-------------------------TGGTGCTCTTCGG-C--CTTGGAGGGCAGTTCACTTCAGG
gi|15 : CCCCCCTACGGAAGGGGTAGG-CTTGATGATATCTTTGGAGATAT-ATTGTGCTCTCATCGGATGGGAACCTGTC
gi|16 : cCCAGTTGCTCTGGGCAGGTGGGGCTCGTAAG-C--CTTGGATGGagc
gi|2 : AGGAAGGAAACTCCAAAATCAAACCATCTCTATTCGCAGTTATTAGGGGTTAGTGTACTGTAGGATCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAATGAACAAA
gi|3 : CAACACAAGTGGCAAGTGAAATGAGAAAGTACAGATCAAGGTCCTTGTTAA--TGGATTA-GTGAAACAAGATGGAATGGTAG-CG-GCCAGTTGAGATTAGCATCAGGAGAGA--CCGTCATTTACTCTGGACACGAAGACCTGATTATGATCACACCCA----GAAGTAGTATTTCTTTATG-T---CCCAGAAGCACCAGAG--CACTGATGGCATGGGAACCAGTCTCATCACGACTCATATCATCAAGGTTCAACTCTCAAAg
gi|4 : atGGCCAACAACCCTACCCCCCAAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAATGAACAAAtgaagaa
gi|5 : AGGAAAAGGGAGGTGGAAGGCGGATCCACTGGCGCCTTAAA--CAGT-GCT-CGA--AGGTGGG-----CCAA-TAAC-TGGATG-CAGTTCA-CCTAGGAGAAGAAAA---------CTCTGATTTCAAAACCTCCGC-GC-TTGCGG-CA-ACATCACTCAACGGAATGGCTTTAGA--GTAAACCTGAGGAAAAAT
gi|6 : ttattccagaaaaATTCTCCACGTGGCGTGTGCCTCAAATAGCCACTGTC---AACCAAAGTC--------AACCTTCT-AGTCTGCTAGCATGGCTTGTA------CCTAGCGGAACTGCTATTGCCGATGGGAGAATGG--GCG-ACGGCGGGTTACATGGCGCCTGAAAACCGG----TTTGGGTAGATGGGGCTCATCAG-T--C-T-GAGGccggagttggagtcccgtaggcg
gi|7 : GTTTCAAGGTTGTCAAAGC-CGGGGGTGGTGGTGGGAGGGGGGGGGGGAATGGGGGCAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCAAGCGCCTCAAATAACCTCTGAC---A--CGAAGTC--------CAGCTCCTAAGCCTGCTTG
gi|8 : caactgatttctgGTTCCAAGGTTGTCATAGCTC---------------AGGGA---------TGG---T----------------------TCTATAAAGTGCTCCCGATGACATGTGTCTCA-----CCT-------------AAGTC--------CAGCTCCT--GCCTGCCCGCGTGGTTTAGATATAAGCCGGGCGGAACTGCTTCTACTGACAGGAGGAGGG--GTG-TAGGCGGATCA
gi|9 : ggaggGTTCCAAGGTTGTCATAGC-C----------------GGGG---------TGG---CATTGGTAATAAACTCCCATTTGTCTATAAAATGCTC---AGGGCGTGCACCTCAAATAGCCTCTGACAAAAACCAAAGACCATGTGCACAGCTCCT-AGCTTGCTTGTGCGG
Alignments
lowQualScore : 1 66666666666666666666666666666 111111 1 11111 22222222 11 222 1 11 1111 88888888888888888888888 1 222222222 22222 22 1 1 222 1111 11 11 1 11 11 2222 1 1 111 1 22222 11 11 1
lowQualScore : 0 99999999999999999999999999999 888888 22 0 0 0 4 0 1 55555 99999999 11 1 444 3 1 99 6 88 3 0 44 66 33 2 0 2 5 5555 1 6 00000000000000000000000 3 2 3 4 2 2 3 7 666666666 1 1 1 2 66666 00 3 0 0 0 0 3 1 333 0 9999 1 88 6 1 7 0 88 3 1 7 5 1 1 1 88 88 1 1 3333 5 22 1 1 5 999 1 3 77777 0 88 00 1 1 1 1 1 1 1 1 1 5
lowQualScore : . ............................. ...... .. . . . . . . ..... ........ .. . ... . . .. . .. . . .. .. .. . . . . .... . . ....................... . . . . . . . . ......... . . . . ..... .. . . . . . . . ... . .... . .. . . . . .. . . . . . . . .. .. . . .... . .. . . . ... . . ..... . .. .. . . . . . . . . . .
lowQualScore : 0 88888888888888888888888888888 222222 88 2 8 0 0 8 0 44444 00000000 88 4 333 7 4 22 7 88 8 4 66 33 66 2 2 2 0 9999 7 7 55555555555555555555555 2 5 2 2 5 5 3 3 000000000 0 0 0 5 55555 00 3 7 7 7 7 3 0 333 7 7777 0 33 7 0 3 7 33 7 0 3 5 0 0 0 00 00 0 0 5555 5 00 0 0 5 777 0 3 77777 7 77 33 0 0 0 0 0 0 0 0 0 5
consensus : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCGTGCGCCTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGCTACTACCGACAGGAGAAGGG--GTG-AAGGCGGATCAACTGGCGCCTNAAAACCAGT-GCTTCGGGCAGGTGGGGCTCGTCAG-T--C-TGGAGGGCAGCTCA-TCTAGGAGAAGGAAA---------CT---------AAACCTCTGCTGCCTTGCGGCCATACCCACTTA-CGGAAAAGGCTTAGG--GTAAACCTGAGGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGANACTCCNAAATCAAACCATCTCTNCTCGCGGTTATTAGGGGTTAGTGTACTGTAGGACCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGACGCCGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCGCCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAAGNAGCAAATGAGATGA---AGCGCTGATCAANATC--TGTTTACTTGGANTAAGCGAGACAAGATGG--TCGNAGACGTGNCAGCTGAGACTGGCNTCNGGAGAGATGCCGTCATNTACTCNGGACACGAAGACCTGANNGNGANCACCCCCATA-GGAAGGNGTA-GGCTTTATG-TATCCTCGGAGGTACCAGCGTGCTCTNATCGGATGGGAACCTGTCNCNTCNCGGNTNATANCANCAAGGTTCAACNCTCAAA
Reference ( family-3900 ) : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCGTGCGCCTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGCTACTACCGACAGGAGAAGGG--GTG-AAGGCGGATCAACTGGCGCCTNAAAACCAGT-GCTTCGGGCAGGTGGGGCTCGTCAG-T--C-TGGAGGGCAGCTCA-TCTAGGAGAAGGAAA---------CT---------AAACCTCTGCTGCCTTGCGGCCATACCCACTTA-CGGAAAAGGCTTAGG--GTAAACCTGAGGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGANACTCCNAAATCAAACCATCTCTNCTCGCGGTTATTAGGGGTTAGTGTACTGTAGGACCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGACGCCGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCGCCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAAGNAGCAAATGAGATGA---AGCGCTGATCAANATC--TGTTTACTTGGANTAAGCGAGACAAGATGG--TCGNAGACGTGNCAGCTGAGACTGGCNTCNGGAGAGATGCCGTCATNTACTCNGGACACGAAGACCTGANNGNGANCACCCCCATA-GGAAGGNGTA-GGCTTTATG-TATCCTCGGAGGTACCAGCGTGCTCTNATCGGATGGGAACCTGTCNCNTCNCGGNTNATANCANCAAGGTTCAACNCTCAAA
gi|1 : GTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCCCCCATT-GTCTATAAAATGCTTCTCATGACGTGCACTTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-GGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGTTATTACCGAAAGCAGAGGGG--ATG-AAGGCGGGTTAAATAGCGCCTGAAACCCAGT-GCTTTGAATAGCTGGGACTCGTTAA-T--C-TGAGGGACAGCTCA-TCTAAGAGAAGGAAAATTCTGATTCC---------AAACCTCTGCTGCCTTGCAGCCATACCCACTTA-TGGAAAAGGC-TAGG---------TGAAGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGACATTTCCAAATCAAACCATCTCTCCTCGAGGTTATTAGGGGTTAG-----TGTAGGACCAACAACCCTACCTG--AAAAAAAAGTCAAGTTATAGAAGCATCTACGTCAAACCAAAATCAACATAACCTGGGCCATATTGGGCCTACTTCAAGGGGAACTATGACGACGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGTTGATTCCCTTTCTGACACCCAGGAAACCTGCCAGACTTGCTACTTTGAATGTAAGATCAATGTATAAAGCAAAAAGAACAGCACAAGTAGCAAATGAGATGA---AGCATTG--CAACATC--TGTTTACTTGGACTAAGCGAGACAAGATGG--TTGCAGACATGACAGCTGAGACTGGTCTTCGGAGAAATGCTGT--TGTATTCAGGACAC----ATC-GAGGGGGAGC-CCCCCATA-GGAAGGCGAA-GGCTTTATGCTATTCTTGGAGGTA-CAGCGTGCTCTTATCGGATGGGAACCTGTCACCTCTCGGATAATAACAGCAAAATTCAACAC-CAAA
gi|10 : gtGCTACTACTGACAGGAGAAGGT--GTG-AAGGCGGACCA-CTGGCGCCTTAAAACCAGTTGCTTCGGGCAGGTGGGGCTCGTCAGCT--T-TGGAGGGCAGTTCA-aaaaaacaacaacaaaaaacaacaagatcaacctgaatatatccagtgttatgcccctaccaacgacgctgatgatgtgaagaaagctgccgttcaccaacaactgcaggcagttcttgacaaaacaggaaagaaagacatgacaata
gi|11 : catggtctgcacccactctggcattgaattcacccaagaga-GCTTTGGGCAGATGGGGCTCATCAA-TG-T-TGGATGGCACCTCA-TCTAGGGGAGAGAAA---------CT------------CCGCTGGTGCCT-------ATACCCACCTA-CAGAGAAGGCTAAGGGAGTAAA
gi|12 : AAGCAAGCAAAACAGCACAAGCAGCTCTTGAGATGA---AGCGCT-AT-AATATC--AGCATACTTGGTGTAAGTGAGTGTAGATGG--TCAGGGAC
gi|13 : GAGTAAATGGGACTCATCAG-T--C-TGAGGGACAGCTCG-TCTTGGAGAAGGA----------------------AAACCTCTGCTGCCTTGCAGCCATACCCAa
gi|14 : tgcgttgtcaCTTCTACTGACAGGAGGAGGG--GTG-TAGGCGGATC-ACTGGCAC-------------------------TGGTGCTCTTCGG-C--CTTGGAGGGCAGTTCACTTCAGG
gi|15 : CCCCCCTACGGAAGGGGTA-GGCTTGATGATATCTTTGGAGATAT-ATTGTGCTCTCATCGGATGGGAACCTGTC
gi|16 : cCCAGTTGCTCTGGGCAGGTGGGGCTCGTAAG-C--CTTGGATGGagc
gi|2 : AGGAAGGAAACTCCAAAATCAAACCATCTCTATTCGCAGTTATTAGGGGTTAGTGTACTGTAGGATCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAATGAACAAA
gi|3 : CAACACAAGTGGCAAGTGAAATGAGAAAGTACAGATCAAGGTCCTTGTTAA--TGGATTA-GTGAAACAAGATGGAATGGTAG-CG-GCCAGTTGAGATTAGCATCAGGAGAGA--CCGTCATTTACTCTGGACACGAAGACCTGATTATGATCACACCCA----GAAGTAGTATTTCTTTATG-T---CCCAGAAGCACCAGA--GCACTGATGGCATGGGAACCAGTCTCATCACGACTCATATCATCAAGGTTCAACTCTCAAAg
gi|4 : atGGCCAACAACCCTACCCCCCAAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAATGAACAAAtgaagaa
gi|5 : AGGAAAAGGGAGGTGGAAGGCGGATCCACTGGCGCCTTAAA--CAGT-GCT-CGA--AGGTGGG-----CCAA-TAAC-TGGATG-CAGTTCA-CCTAGGAGAAGAAAA---------CTCTGATTTCAAAACCTCCGC-GC-TTGCGGCAACATC-ACTCAACGGAATGGCTTTAGA--GTAAACCTGAGGAAAAAT
gi|6 : ttattccagaaaaATTCTCCACGTGGCGTGTGCCTCAAATAGCCACTGTC---AACCAAAGTC--------AACCTTCT-AGTCTGCTAGCATGGCTTGTA------CCTAGCGGAACTGCTATTGCCGATGGGAGAATGG--GCG-ACGGCGGGTTACATGGCGCCTGAAAACCGG----TTTGGGTAGATGGGGCTCATCAG-T--C-T-GAGGccggagttggagtcccgtaggcg
gi|7 : GTTTCAAGGTTGTCAAAGC-CGGGGGTGGTGGTGGGAGGGGGGGGGGGAATGGGGGCAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCAAGCGCCTCAAATAACCTCTGAC---A--CGAAGTC--------CAGCTCCTAAGCCTGCTTG
gi|8 : caactgatttctgGTTCCAAGGTTGTCATAGCTC---------------AGGGA---------TGG---T----------------------TCTATAAAGTGCTCCCGATGACATGTGTCTCA-----CCT-------------AAGTC--------CAGCTCCT--GCCTGCCCGCGTGGTTTAGATATAAGCCGGGCGGAACTGCTTCTACTGACAGGAGGAGGG--GTG-TAGGCGGATCA
gi|9 : ggaggGTTCCAAGGTTGTCATAGC-C----------------GGGG---------TGG---CATTGGTAATAAACTCCCATTTGTCTATAAAATGCTC---AGGGCGTGCACCTCAAATAGCCTCTGACAAAAACCAAAGACCATGTGCACAGCTCCT-AGCTTGCTTGTGCGG
Alignments
lowQualScore : 1 66666666666666666666666666666 111111 1 11111 22222222 11 222 1 11 1111 88888888888888888888888 1 222222222 22222 22 1 1 222 1111 11 11 1 11 11 2222 1 1 111 1 22222 11 11 1
lowQualScore : 0 99999999999999999999999999999 888888 22 0 0 0 4 0 1 55555 99999999 11 1 444 3 1 99 6 88 3 0 44 66 33 2 0 2 5 5555 1 6 00000000000000000000000 3 2 3 4 2 2 3 7 666666666 1 1 1 2 66666 00 3 0 0 0 0 3 1 333 0 9999 1 88 6 1 7 0 88 3 1 7 5 1 1 1 88 88 1 1 3333 5 22 1 1 5 999 1 3 77777 0 88 00 1 1 1 1 1 1 1 1 1 5
lowQualScore : . ............................. ...... .. . . . . . . ..... ........ .. . ... . . .. . .. . . .. .. .. . . . . .... . . ....................... . . . . . . . . ......... . . . . ..... .. . . . . . . . ... . .... . .. . . . . .. . . . . . . . .. .. . . .... . .. . . . ... . . ..... . .. .. . . . . . . . . . .
lowQualScore : 0 88888888888888888888888888888 222222 88 2 8 0 0 8 0 44444 00000000 88 4 333 7 4 22 7 88 8 4 66 33 66 2 2 2 0 9999 7 7 55555555555555555555555 2 5 2 2 5 5 3 3 000000000 0 0 0 5 55555 00 3 7 7 7 7 3 0 333 7 7777 0 33 7 0 3 7 33 7 0 3 5 0 0 0 00 00 0 0 5555 5 00 0 0 5 777 0 3 77777 7 77 33 0 0 0 0 0 0 0 0 0 5
consensus : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCGTGCGCCTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGCTACTACCGACAGGAGAAGGG--GTG-AAGGCGGATCAACTGGCGCCTNAAAACCAGT-GCTTCGGGCAGGTGGGGCTCGTCAG-T--C-TGGAGGGCAGCTCA-TCTAGGAGAAGGAAA---------CT---------AAACCTCTGCTGCCTTGCGGCCATACCCACTTA-CGGAAAAGGCTTAGG--GTAAACCTGAGGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGANACTCCNAAATCAAACCATCTCTNCTCGCGGTTATTAGGGGTTAGTGTACTGTAGGACCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGACGCCGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCGCCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAAGNAGCAAATGAGATGA---AGCGCTGATCAANATC--TGTTTACTTGGANTAAGCGAGACAAGATGG--TCGNAGACGTGNCAGCTGAGACTGGCNTCNGGAGAGATGCCGTCATNTACTCNGGACACGAAGACCTGANNGNGANCACCCCCATA-GGAAGGNGTA-GGCTTTATG-TATCCTCGGAGGTACCAGCGTGCTCTNATCGGATGGGAACCTGTCNCNTCNCGGNTNATANCANCAAGGTTCAACNCTCAAA
Reference ( family-3900 ) : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCGTGCGCCTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGCTACTACCGACAGGAGAAGGG--GTG-AAGGCGGATCAACTGGCGCCTNAAAACCAGT-GCTTCGGGCAGGTGGGGCTCGTCAG-T--C-TGGAGGGCAGCTCA-TCTAGGAGAAGGAAA---------CT---------AAACCTCTGCTGCCTTGCGGCCATACCCACTTA-CGGAAAAGGCTTAGG--GTAAACCTGAGGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGANACTCCNAAATCAAACCATCTCTNCTCGCGGTTATTAGGGGTTAGTGTACTGTAGGACCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGACGCCGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCGCCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAAGNAGCAAATGAGATGA---AGCGCTGATCAANATC--TGTTTACTTGGANTAAGCGAGACAAGATGG--TCGNAGACGTGNCAGCTGAGACTGGCNTCNGGAGAGATGCCGTCATNTACTCNGGACACGAAGACCTGANNGNGANCACCCCCATA-GGAAGGNGTA-GGCTTTATG-TATCCTCGGAGGTACCAGCGTGCTCTNATCGGATGGGAACCTGTCNCNTCNCGGNTNATANCANCAAGGTTCAACNCTCAAA
gi|1 : GTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCCCCCATT-GTCTATAAAATGCTTCTCATGACGTGCACTTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-GGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGTTATTACCGAAAGCAGAGGGG--ATG-AAGGCGGGTTAAATAGCGCCTGAAACCCAGT-GCTTTGAATAGCTGGGACTCGTTAA-T--C-TGAGGGACAGCTCA-TCTAAGAGAAGGAAAATTCTGATTCC---------AAACCTCTGCTGCCTTGCAGCCATACCCACTTA-TGGAAAAGGC-TAGG---------TGAAGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGACATTTCCAAATCAAACCATCTCTCCTCGAGGTTATTAGGGGTTAG-----TGTAGGACCAACAACCCTACCTG--AAAAAAAAGTCAAGTTATAGAAGCATCTACGTCAAACCAAAATCAACATAACCTGGGCCATATTGGGCCTACTTCAAGGGGAACTATGACGACGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGTTGATTCCCTTTCTGACACCCAGGAAACCTGCCAGACTTGCTACTTTGAATGTAAGATCAATGTATAAAGCAAAAAGAACAGCACAAGTAGCAAATGAGATGA---AGCATTG--CAACATC--TGTTTACTTGGACTAAGCGAGACAAGATGG--TTGCAGACATGACAGCTGAGACTGGTCTTCGGAGAAATGCTGT--TGTATTCAGGACAC----ATC-GAGGGGGAGC-CCCCCATA-GGAAGGCGAA-GGCTTTATGCTATTCTTGGAGGTA-CAGCGTGCTCTTATCGGATGGGAACCTGTCACCTCTCGGATAATAACAGCAAAATTCAACAC-CAAA
gi|10 : gtGCTACTACTGACAGGAGAAGGT--GTG-AAGGCGGACCA-CTGGCGCCTTAAAACCAGTTGCTTCGGGCAGGTGGGGCTCGTCAGCT--T-TGGAGGGCAGTTCA-aaaaaacaacaacaaaaaacaacaagatcaacctgaatatatccagtgttatgcccctaccaacgacgctgatgatgtgaagaaagctgccgttcaccaacaactgcaggcagttcttgacaaaacaggaaagaaagacatgacaata
gi|11 : catggtctgcacccactctggcattgaattcacccaagaga-GCTTTGGGCAGATGGGGCTCATCAA-TG-T-TGGATGGCACCTCA-TCTAGGGGAGAGAAA---------CT------------CCGCTGGTGCCT-------ATACCCACCTA-CAGAGAAGGCTAAGGGAGTAAA
gi|12 : AAGCAAGCAAAACAGCACAAGCAGCTCTTGAGATGA---AGCGCT-AT-AATATC--AGCATACTTGGTGTAAGTGAGTGTAGATGG--TCAGGGAC
gi|13 : GAGTAAATGGGACTCATCAG-T--C-TGAGGGACAGCTCG-TCTTGGAGAAGGA----------------------AAACCTCTGCTGCCTTGCAGCCATACCCAa
gi|14 : tgcgttgtcaCTTCTACTGACAGGAGGAGGG--GTG-TAGGCGGATC-ACTGGCAC-------------------------TGGTGCTCTTCGG-C--CTTGGAGGGCAGTTCACTTCAGG
gi|15 : CCCCCCTACGGAAGGGGTA-GGCTTGATGATATCTTTGGAGATAT-ATTGTGCTCTCATCGGATGGGAACCTGTC
gi|16 : cCCAGTTGCTCTGGGCAGGTGGGGCTCGTAAG-C--CTTGGATGGagc
gi|2 : AGGAAGGAAACTCCAAAATCAAACCATCTCTATTCGCAGTTATTAGGGGTTAGTGTACTGTAGGATCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAATGAACAAA
gi|3 : CAACACAAGTGGCAAGTGAAATGAGAAAGTACAGATCAAGGTCCTTGTTAA--TGGATTA-GTGAAACAAGATGGAATGGTAG-CG-GCCAGTTGAGATTAGCATCAGGAGAGA--CCGTCATTTACTCTGGACACGAAGACCTGATTATGATCACACCCA----GAAGTAGTATTTCTTTATG-T---CCCAGAAGCACCAGA--GCACTGATGGCATGGGAACCAGTCTCATCACGACTCATATCATCAAGGTTCAACTCTCAAAg
gi|4 : atGGCCAACAACCCTACCCCCCAAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAATGAACAAAtgaagaa
gi|5 : AGGAAAAGGGAGGTGGAAGGCGGATCCACTGGCGCCTTAAA--CAGT-GCT-CGA--AGGTGGG-----CCAA-TAAC-TGGATG-CAGTTCA-CCTAGGAGAAGAAAA---------CTCTGATTTCAAAACCTCCGC-GC-TTGCGGCAACATC-ACTCAACGGAATGGCTTTAGA--GTAAACCTGAGGAAAAAT
gi|6 : ttattccagaaaaATTCTCCACGTGGCGTGTGCCTCAAATAGCCACTGTC---AACCAAAGTC--------AACCTTCT-AGTCTGCTAGCATGGCTTGTA------CCTAGCGGAACTGCTATTGCCGATGGGAGAATGG--GCG-ACGGCGGGTTACATGGCGCCTGAAAACCGG----TTTGGGTAGATGGGGCTCATCAG-T--C-T-GAGGccggagttggagtcccgtaggcg
gi|7 : GTTTCAAGGTTGTCAAAGC-CGGGGGTGGTGGTGGGAGGGGGGGGGGGAATGGGGGCAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCAAGCGCCTCAAATAACCTCTGAC---A--CGAAGTC--------CAGCTCCTAAGCCTGCTTG
gi|8 : caactgatttctgGTTCCAAGGTTGTCATAGCTC---------------AGGGA---------TGG---T----------------------TCTATAAAGTGCTCCCGATGACATGTGTCTCA-----CCT-------------AAGTC--------CAGCTCCT--GCCTGCCCGCGTGGTTTAGATATAAGCCGGGCGGAACTGCTTCTACTGACAGGAGGAGGG--GTG-TAGGCGGATCA
gi|9 : ggaggGTTCCAAGGTTGTCATAGC-C----------------GGGG---------TGG---CATTGGTAATAAACTCCCATTTGTCTATAAAATGCTC---AGGGCGTGCACCTCAAATAGCCTCTGACAAAAACCAAAGACCATGTGCACAGCTCCT-AGCTTGCTTGTGCGG
blockSeqs : T GGGGGTGGTGGTGGGAGGGGGGGGGGGAA GGGCAA GG T A T AAAAA CATGTGCA AA A TAT T A AG G CA T A TT TC GC G G C AAC G C AACTCTGATTTCAA T C T A C C A T GTAAACC A A A C TGTAC CC . . C GAA GATC T CT C G A AA C G A . C A A . CA T T GAAG T TT T T A TAC G T ATATC CC TG C T A A C C T T T T
blockSeqs : . AGGGA CAT TA . T A AA . A T . G T . . AC T A TT TT GC A A . GT G . AACT T C T G A C . T C . . G . AT G . . T . . G T . . A . T T A G
blockSeqs : . GGGG T . . C A A . A C A . . A G . T CT GT A A . CT A . A . . . . . . T
blockSeqs : . . . . . T T . . A . . . TT GC G T . CT G . G
blockSeqs : . . . C GT G G . T G .
blockSeqs : . . A A . C .
blockSeqs : . . . . C
blockSeqCons : A**** T* CT**
originalCons : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCGTGCGCCTCAAATAGCCTCTGAC---AACCAAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGCTACTACCGACAGGAGAAGGG--GTG-AAGGCGGATCAACTGGCGCCTNAAAACCAGT-GCTTCGGGCAGGTGGGGCTCGTCAG-T--C-TGGAGGGCAGCTCA-TCTAGGAGAAGGAAA---------CT---------AAACCTCTGCTGCCTTGCGGCCATACCCACTTA-CGGAAAAGGCTTAGG--GTAAACCTGAGGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGANACTCCNAAATCAAACCATCTCTNCTCGCGGTTATTAGGGGTTAGTGTACTGTAGGACCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGACGCCGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCGCCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAAGNAGCAAATGAGATGA---AGCGCTGATCAANATC--TGTTTACTTGGANTAAGCGAGACAAGATGG--TCGNAGACGTGNCAGCTGAGACTGGCNTCNGGAGAGATGCCGTCATNTACTCNGGACACGAAGACCTGANNGNGANCACCCCCATA-GGAAGGNGTA-GGCTTTATG-TATCCTCGGAGGTACCAGCGTGCTCTNATCGGATGGGAACCTGTCNCNTCNCGGNTNATANCANCAAGGTTCAACNCTCAAA
finalCons : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCGTGCGCCTCAAATAGCCTCTGACA----CCAAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGCTACTACCGACAGGAGAAGGG--GTG-AAGGCGGATCAACTGGCGCCTNAAAACCAGT-GCTTCGGGCAGGTGGGGCTCGTCAG-TCT--TGGAGGGCAGCTCA-TCTAGGAGAAGGAAA---------CT---------AAACCTCTGCTGCCTTGCGGCCATACCCACTTA-CGGAAAAGGCTTAGG--GTAAACCTGAGGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGANACTCCNAAATCAAACCATCTCTNCTCGCGGTTATTAGGGGTTAGTGTACTGTAGGACCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGACGCCGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCGCCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAAGNAGCAAATGAGATGA---AGCGCTGATCAANATC--TGTTTACTTGGANTAAGCGAGACAAGATGG--TCGNAGACGTGNCAGCTGAGACTGGCNTCNGGAGAGATGCCGTCATNTACTCNGGACACGAAGACCTGANNGNGANCACCCCCATA-GGAAGGNGTA-GGCTTTATG-TATCCTCGGAGGTACCAGCGTGCTCTNATCGGATGGGAACCTGTCNCNTCNCGGNTNATANCANCAAGGTTCAACNCTCAAA
Alignments
lowQualScore : 1 66666666666666666666666666666 111111 1 3333333 22222222 11 222 1 11 1 1 9999999999999999999999 1 1 222222222 22222 22 1 1 222 1111 11 11 1 11 11 2222 1 1 111 1 22222 11 11 1
lowQualScore : 0 99999999999999999999999999999 888888 22 0 0 0 4 0 1 3333333 99999999 11 1 444 3 1 99 6 88 3 0 44 66 33 2 0 2 66 5 1 6 5555555555555555555555 3 2 3 4 2 2 3 6 666666666 1 1 1 2 66666 00 3 0 0 0 0 3 1 333 0 9999 1 88 6 1 7 0 88 3 1 7 5 1 1 1 88 88 1 1 3333 5 22 1 1 5 999 1 3 77777 0 88 00 1 1 1 1 1 1 1 1 1 5
lowQualScore : . ............................. ...... .. . . . . . . ....... ........ .. . ... . . .. . .. . . .. .. .. . . . .. . . . ...................... . . . . . . . . ......... . . . . ..... .. . . . . . . . ... . .... . .. . . . . .. . . . . . . . .. .. . . .... . .. . . . ... . . ..... . .. .. . . . . . . . . . .
lowQualScore : 0 88888888888888888888888888888 222222 88 2 8 0 0 8 0 8888888 00000000 88 4 333 7 4 22 7 88 8 4 66 33 66 2 2 2 99 5 4 7 5555555555555555555555 2 5 2 2 5 5 3 0 000000000 0 0 0 5 55555 00 3 7 7 7 7 3 0 333 7 7777 0 33 7 0 3 7 33 7 0 3 5 0 0 0 00 00 0 0 5555 5 00 0 0 5 777 0 3 77777 7 77 33 0 0 0 0 0 0 0 0 0 5
consensus : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCGTGCGCCTCAAATAGCCTCTGAC----AACCAAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGCTACTACCGACAGGAGAAGGG--GTG-AAGGCGGATCAACTGGCGCCTNAAAACCAGT-GCTTCGGGCAGGTGGGGCTCGTCAGT--CTTGGAGGG-CAGCTCA-TCTAGGAGAAGGAAA---------CT---------AAACCTCTGCTGCCTTGCGGCCATACCCACTTA-CGGAAAAGGCT-AGG--GTAAACCTGAGGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGANACTCCNAAATCAAACCATCTCTNCTCGCGGTTATTAGGGGTTAGTGTACTGTAGGACCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGACGCCGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCGCCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAAGNAGCAAATGAGATGA---AGCGCTGATCAANATC--TGTTTACTTGGANTAAGCGAGACAAGATGG--TCGNAGACGTGNCAGCTGAGACTGGCNTCNGGAGAGATGCCGTCATNTACTCNGGACACGAAGACCTGANNGNGANCACCCCCATA-GGAAGGNGTA-GGCTTTATG-TATCCTCGGAGGTACCAGCGTGCTCTNATCGGATGGGAACCTGTCNCNTCNCGGNTNATANCANCAAGGTTCAACNCTCAAA
Reference ( family-3900 ) : NNGTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCGTGCGCCTCAAATAGCCTCTGAC----A-CCAAAGTC--------CAGCTCCT-AGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGCTACTACCGACAGGAGAAGGG--GTG-AAGGCGGATCAACTGGCGCCTNAAAACCAGT-GCTTCGGGCAGGTGGGGCTCGTCAGT--CTTGGAGGG-CAGCTCA-TCTAGGAGAAGGAAA---------CT---------AAACCTCTGCTGCCTTGCGGCCATACCCACTTA-CGGAAAAGGCTTAGG--GTAAACCTGAGGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGANACTCCNAAATCAAACCATCTCTNCTCGCGGTTATTAGGGGTTAGTGTACTGTAGGACCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGACGCCGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCGCCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAAGNAGCAAATGAGATGA---AGCGCTGATCAANATC--TGTTTACTTGGANTAAGCGAGACAAGATGG--TCGNAGACGTGNCAGCTGAGACTGGCNTCNGGAGAGATGCCGTCATNTACTCNGGACACGAAGACCTGANNGNGANCACCCCCATA-GGAAGGNGTA-GGCTTTATG-TATCCTCGGAGGTACCAGCGTGCTCTNATCGGATGGGAACCTGTCNCNTCNCGGNTNATANCANCAAGGTTCAACNCTCAAA
gi|1 : GTTCCAAGGTTGTCATAGC-C---------------AGGGG---------TGG---CAATGGGGATAAGCCCCCATT-GTCTATAAAATGCTTCTCATGACGTGCACTTCAAATAGCCTCTGAC----AACCAAAGTC--------CAGCTCCT-GGCCTGCTCGCGCGGCTTGTAT-CAAGCCCGGCGGAACTGTTATTACCGAAAGCAGAGGGG--ATG-AAGGCGGGTTAAATAGCGCCTGAAACCCAGT-GCTTTGAATAGCTGGGACTCGTTAAT--CT--GAGGGACAGCTCA-TCTAAGAGAAGGAAAATTCTGATTCC---------AAACCTCTGCTGCCTTGCAGCCATACCCACTTA-TGGAAAAGGCT-AGG---------TGAAGAAAAATACTGATATGAAACCAAATGGGCGGACTGCGCTCAATATCCAGGGATGGAAAGCAGTCTAGGAAGGACATTTCCAAATCAAACCATCTCTCCTCGAGGTTATTAGGGGTTAGTGTA-----GGACCAACAACCCTACCTG--AAAAAAAAGTCAAGTTATAGAAGCATCTACGTCAAACCAAAATCAACATAACCTGGGCCATATTGGGCCTACTTCAAGGGGAACTATGACGACGTGCAACGAAAGCCGAGAGGAAGTTGTAGGGTTGATTCCCTTTCTGACACCCAGGAAACCTGCCAGACTTGCTACTTTGAATGTAAGATCAATGTATAAAGCAAAAAGAACAGCACAAGTAGCAAATGAGATGA---AGCATTG--CAACATC--TGTTTACTTGGACTAAGCGAGACAAGATGG--TTGCAGACATGACAGCTGAGACTGGTCTTCGGAGAAATGCTGT--TGTATTCAGGACAC----ATC-GAGGGGGAGC-CCCCCATA-GGAAGGCGAA-GGCTTTATGCTATTCTTGGAGGTA-CAGCGTGCTCTTATCGGATGGGAACCTGTCACCTCTCGGATAATAACAGCAAAATTCAACAC-CAAA
gi|10 : gtGCTACTACTGACAGGAGAAGGT--GTG-AAGGCGGACCA-CTGGCGCCTTAAAACCAGTTGCTTCGGGCAGGTGGGGCTCGTCAGC--TTTGGAGGG-CAGTTCA-aaaaaacaacaacaaaaaacaacaagatcaacctgaatatatccagtgttatgcccctaccaacgacgctgatgatgtgaagaaagctgccgttcaccaacaactgcaggcagttcttgacaaaacaggaaagaaagacatgacaata
gi|11 : catggtctgcacccactctggcattgaattcacccaagaga-GCTTTGGGCAGATGGGGCTCATCAAT--GTTGGATGG-CACCTCA-TCTAGGGGAGAGAAA---------CT------------CCGCTGGTGCCT-------ATACCCACCTA-CAGAGAAGGCTAAGGGAGTAAA
gi|12 : AAGCAAGCAAAACAGCACAAGCAGCTCTTGAGATGA---AGCGCT-AT-AATATC--AGCATACTTGGTGTAAGTGAGTGTAGATGG--TCAGGGAC
gi|13 : GAGTAAATGGGACTCATCAGT--CT--GAGGGACAGCTCG-TCTTGGAGAAGGAAA----------------------ACCTCTGCTGCCTTGCAGCCATACCCAa
gi|14 : tgcgttgtcaCTTCTACTGACAGGAGGAGGG--GTG-TAGGCGGATC-ACTGGCAC-------------------------TGGTGCTCTTCGGC--CTTGGAGGG-CAGTTCACTTCAGG
gi|15 : CCCCCCTACGGAAGGGGTA-GGCTTGATGATATCTTTGGAGATAT-ATTGTGCTCTCATCGGATGGGAACCTGTC
gi|16 : cCCAGTTGCTCTGGGCAGGTGGGGCTCGTAAGC--CTTGGATGG-agc
gi|2 : AGGAAGGAAACTCCAAAATCAAACCATCTCTATTCGCAGTTATTAGGGGTTAGTGTACTGTAGGATCAACAACCCTACCCGC-AAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAATGAACAAA
gi|3 : CAACACAAGTGGCAAGTGAAATGAGAAAGTACAGATCAAGGTCCTTGTTAA--TGGATTA-GTGAAACAAGATGGAATGGTAG-CG-GCCAGTTGAGATTAGCATCAGGAGAGA--CCGTCATTTACTCTGGACACGAAGACCTGATTATGATCACACCCA----GAAGTAGTATTTCTTTATG-T---CCCAGAAGCACCAGA--GCACTGATGGCATGGGAACCAGTCTCATCACGACTCATATCATCAAGGTTCAACTCTCAAAg
gi|4 : atGGCCAACAACCCTACCCCCCAAAAAAAAGTAAAGTTACAGAAGCATCAACG-AAAACCAAAATCAACATAACCTGGGCCAGATTGGACCAACTTCAATGGGAACTATGATGCCATGCAATGAAAGCCGAGAGGAAGTTGTAGGGCTGATTCCCATTCTGACACCCAGGAAACCCACCAGACTT-CTACTTGGAATGTAAGAACAATGTACGAAGCAGGAAAAACAGCACAATGAACAAAtgaagaa
gi|5 : AGGAAAAGGGAGGTGGAAGGCGGATCCACTGGCGCCTTAAA--CAGT-GCT-CGA--AGGTGGG-----CCAATAACT-GGATG--CAGTTCA-CCTAGGAGAAGAAAA---------CTCTGATTTCAAAACCTCCGC-GC-TTGCGGCAACATC-ACTCAACGGAATGGCTTTAGA--GTAAACCTGAGGAAAAAT
gi|6 : ttattccagaaaaATTCTCCACGTGGCGTGTGCCTCAAATAGCCACTGTC----AACCAAAGTC--------AACCTTCT-AGTCTGCTAGCATGGCTTGTA------CCTAGCGGAACTGCTATTGCCGATGGGAGAATGG--GCG-ACGGCGGGTTACATGGCGCCTGAAAACCGG----TTTGGGTAGATGGGGCTCATCAGT--CT--GAGGccggagttggagtcccgtaggcg
gi|7 : GTTTCAAGGTTGTCAAAGC-CGGGGGTGGTGGTGGGAGGGGGGGGGGGAATGGGGGCAATGGGGATAAGCTCCCATT-GTCTATAAAATGCTCCTCATGGCAAGCGCCTCAAATAACCTCTGAC----A--CGAAGTC--------CAGCTCCTAAGCCTGCTTG
gi|8 : caactgatttctgGTTCCAAGGTTGTCATAGCTC---------------AGGGA---------TGG---T----------------------TCTATAAAGTGCTCCCGATGACATGTGTCTCA-----CCT--------------AAGTC--------CAGCTCCT--GCCTGCCCGCGTGGTTTAGATATAAGCCGGGCGGAACTGCTTCTACTGACAGGAGGAGGG--GTG-TAGGCGGATCA
gi|9 : ggaggGTTCCAAGGTTGTCATAGC-C----------------GGGG---------TGG---CATTGGTAATAAACTCCCATTTGTCTATAAAATGCTC---AGGGCGTGCACCTCAAATAGCCTCTGACAAAAA-CCAAAGACCATGTGCACAGCTCCT-AGCTTGCTTGTGCGG