lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 111 1 11 22 333 1 1 11 88888888888888888888888888888888888888888 11 11 1 33333 22 222 1111 22222 1111 11111 222222 333333 4444444444 111 22 1 111 22222222 111 1111 4444444444444444444 1111 1111 2222 44444444444444 1 22222 1111111 11111 11111 1 444444444 1111 1111 3333333333333333 2222 1 55555555555555 111 11111 1 111111 11 11 111 77777777777777777 111111 1 1111 1 1 2222222222 33333333333 1111 111 11 1 111 11 11 1 6666666666666 11 1 222222222 44 1 222 11 99999 444 1 1111 222 1111 111 333333 1 1 1 1 33333 11 1 1 11 1 1 22 1 1 33 1 11 1 333333333 22222 111 11111 1111111 111 111 11 222 11 111 11 22 2222 1 1 2222222 55 1111111 22 222222 111 2222222 111 111 222222 1 2 3 666 11 1 1
lowQualScore : 7 999 3 6 88 6 00 3 66 6 4 777 6 3 6 5 22 44 9 44444444444444444444444444444444444444444 6 11 11 8 6 3 44444 22 0 111 0 0 7777 5 8 8 8 5 55555 9 5 7777 0 77777 6 3 333333 6 999999 0 8888888888 666 22 6 6 6 6 555 6 6 6 22222222 7 6 888 77 3333 6 6 1111111111111111111 0000 77 5 5 2222 3333 6 77 00000000000000 1 5 5 5 4 33333 5 6666666 5 1 6 5 88888 5 99999 0 5 5 66 5 222222222 0 4444 99999 1111 7777777777777777 6 3 7777 3 6 3 55555555555555 2 6 0 5 111 99 33333 0 999999 11 666 88 8 6 11 444 00000000000000000 1 8 2 1 333333 2 8 6666 2 1 5 8 8 2 888 6 0 3 8 8 7777777777 44444444444 2222 6 888 77 3 666 1 44 2 22 0 0000000000000 88 88 3 0 2 333333333 6 88 2 3 555 6 22 11111 444 0 6 7777 2 2 8 222 2 6 6 6 8888 8 222 111111 5 8 3 0 2 6 5 3 7 33333 33 7 7 22 5 3 0 00 3 3 00 6 5 22 6 8 66 5 88 000000000 99999 666 3 99 77 6 2 99 33333 6 7 0 1 5 99 2222222 6 111 8 0 2 777 2 33 999 8 6 22 999 8 8 33 22 6 6 44 7777 7 0 0 3 5 3 0 3 3333333 6 22 8 8888888 6 6 11 555555 777 1111111 555 2 333 000000 8 5 0 2 6 2 111 44 2 5
lowQualScore : . ... . . .. . .. . .. . . ... . . . . .. .. . ......................................... . .. .. . . . ..... .. . ... . . .... . . . . . ..... . . .... . ..... . . ...... . ...... . .......... ... .. . . . . ... . . . ........ . . ... .. .... . . ................... .... .. . . .... .... . .. .............. . . . . . ..... . ....... . . . . ..... . ..... . . . .. . ......... . .... ..... .... ................ . . .... . . . .............. . . . . ... .. ..... . ...... .. ... .. . . .. ... ................. . . . . ...... . . .... . . . . . . ... . . . . . .......... ........... .... . ... .. . ... . .. . .. . ............. .. .. . . . ......... . .. . . ... . .. ..... ... . . .... . . . ... . . . . .... . ... ...... . . . . . . . . . ..... .. . . .. . . . .. . . .. . . .. . . .. . .. ......... ..... ... . .. .. . . .. ..... . . . . . .. ....... . ... . . . ... . .. ... . . .. ... . . .. .. . . .. .... . . . . . . . . ....... . .. . ....... . . .. ...... ... ....... ... . ... ...... . . . . . . ... .. . .
lowQualScore : 0 000 3 0 33 0 33 7 77 0 7 333 0 3 7 0 00 33 7 55555555555555555555555555555555555555555 6 00 00 0 4 2 44444 88 8 222 8 8 0000 6 0 0 0 0 22222 6 2 0000 8 88888 0 2 000000 4 000000 8 8888888888 888 00 0 7 3 7 888 7 0 0 33333333 2 7 333 33 8888 7 7 6666666666666666666 4444 99 7 7 1111 7777 0 99 00000000000000 4 7 7 7 0 33333 7 3333333 7 4 3 7 44444 0 00000 4 0 0 99 0 777777777 7 1111 00000 6666 7777777777777777 7 3 8888 5 7 3 55555555555555 5 7 7 0 777 55 77777 5 222222 88 222 22 0 8 00 000 22222222222222222 8 0 0 2 222222 2 0 4444 2 8 0 0 0 0 222 8 4 8 0 0 2222222222 66666666666 4444 0 000 00 3 777 0 33 0 22 0 8888888888888 00 22 2 0 5 222222222 5 88 5 3 333 7 77 00000 777 0 0 8888 0 5 8 888 5 0 0 0 0000 0 555 777777 0 0 0 0 5 0 0 3 3 33333 33 0 3 00 0 3 7 77 3 3 00 0 0 00 0 0 88 4 88 888888888 77777 888 7 22 77 7 5 22 00000 7 0 1 7 7 44 6666666 7 333 0 8 5 555 5 88 000 0 0 00 888 0 0 33 77 0 0 77 0000 8 0 5 0 6 0 8 0 2222222 0 44 0 0000000 0 7 00 666666 000 4444444 888 8 888 000000 0 0 0 8 0 0 000 00 8 0
consensus : GAAGTC--GAAGCA-GCAATCAA--AGCA-CTGAANAAAGGGAANTCA-CAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGCA--GG---GG-------------GAGAGGCCATGACGAACGCCCTGACAACCAT-CTGCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAATCAC--TGGTGATTAC----ACTC-CC-CAAGA-AAGGCAA-CCTACAGCTGT----GCCAGAA----TTACCGC------ACCATTAG-C---CTAATAAGT--ACCCC-A-GTAAAGTCATGTT--GAAGATC-TGCT-GAACAGACTGAAA-CCAC-AGG-CAGAGAA-GAT--CATTGCTG-AA---GA-ACA-G-GCAG-GTTTC-AGAGCAGG---------G-CGC-----AG--C-ACAA--C-A-GAACA----GATC---TTCAAC--CT-C-AGAGTAC----TGT-GCGAGAGG-TAC-CTCCA-ACACCAGCAAAACC----TCT-ACC--A---CGTC-TTCGTG-GAC----TTTAA-AA-GGG-CCTTCGA-C-AG--GG-TCTG----CACGCAGCT-TT-ATGGGC--AACCA--T-GAGGA---TGTAT--------AAC-ATC-AACGCCA-ATCT-GATCAACGC--CATACA---TACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGAAGCATAGGGGACTGG-TTCGG--GA---CAACGGT--------CGGGTCG--AGACAA-GGCTGTNTGCTTT-CTCCAACTCT-CTTCAA-C-GTNTCTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGGGCACAATG-GAACAGTC-AG-CA-------TTGGAGGCAG--------GACAATTACNA-NCTTGCGTTTTGCCGACGACATTGACG-NACTAG-CA-G-GGGAA-GAACAAGAG-CTC-GC--CAAACTTG-TAGAACGATTGGACACAA-CCTC-AGCAGC-GTACGGCATGGAGATCAGTGCCGAGAAAACCAAG-CTGATGACC-AACAA-CACCGACGGCATCAAC----ACAGACATCAAAG-TCAGTGGCGAG-AAACTTG-GAACTGTCAAGAG--CTTCAAGTACCTTGGGTCAGTCGTATCAG-ATG-A-AGGATCAAAGCC-TGAAATTCTCTCCA-GGATCGCGCAAAC-AACAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATC-AAAG-TCAGAC-TGAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANT--T-GGAGAGAAGGAT---N-CAGGC--AACNGAAAT--GA-GATGCTA-CCGCAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TC-AC----AAAT-G-C-TGAGGTACG-GAACAGAGTCACAAACGCAG---TGGG--GCCTCACAAA-GATCTTTTGACCACTGTGAAGAGAC-G-AAAACTG-AAGTGGTATGG-GCATGTCACAAGATCCAC-AGGACTTGCCAAGACAATCCT-ACAGGAAACTGTACAAGGAAGGAGAAGGAGAGG-CAGG--CAGAGAAAAGAG-AT----GG-AGGACAACATCACAGA-GTGGACCGGAAAGAC-GCTGAG--CGACAA-CTTGAGGAGGACAGAGAACAGAA--AGGG----ATG-GAGAGAACTGGTTGCCAAGATCAACAGTGG-TGCCCCAACGG
Reference ( gi|1 ) : GAATTC--GAAGCA-GCAATTAA--AACA-ATGAAGAAGAGAAAATAAGCAGAAGTGGATAAC-ATCCCCGGAGAATTAGTA-CAAGCT--TG---GG-------------AAG---------TT----CTCTGACTATCAT-TTGCAAC--AAGATCT-GGCAGAAAAGAGAA--TGGCTGACACCATGGACACAATCAA--TGGTGATTAC----ATTC-CC-CAAGA-AAGGCAA-CCAACAACTAT----GTCAGAA----TTATCGC------ACCATCAT-T---CTAATAAGT--AAACC-G-GTAAGGTCATGTT--AAAGATAGTACT-GAACAGTCTGAAA-CCAC-AAG-CAGGGGA-GAT--AATTGCTG-AA---GA-GCA-G-GCAG-GTTTT-AGAGCAGG---------G-CGC-----AG--C-ACAA--C-A-GAACA----GATG---TTTAAC--CT-CGAGAGTAT----TGT-GCGAGAGG-TAC-CTCCA-ACACCAGCAAAACT----TCT-ACC--A---CATC-TTTGCG-GAT----TTTAA-AA-GGG-CCTTTGA-C-AG--GG-TCTG---ATACGCAGCT-TT-ATGGGC--AACCA--T-GAGGA---CATAC--------AAC-ACC-A-TGTCA-ATCT-GATCAACGT--TATACA-TGTACAACAACTATATGA-CAGGACCT---CCAATG---C-AGTCTA------CCTCAA-CGGCAGCATGGGGGACTGG-TTCAG--GA---CAACGGT--------TAGATTG--AGGCAA-GGTTGTTTGATCT-CTCCCACTCT-CTTCAA-C-TTCTTCTTAG-AAA-GAATCATAACTGGA-G-CACTGGAAGACCACATTG-GAACAGTC-AG-TA-------TTGGAGGCAG--------GGCAATCACAA-ACTTGTGTTTTGCCGATGACATTGACG-GACTAG-CA-G-GAGAA-AAACAGGAA-CTC-GC--CA---TTATTGGAACGGCTGGAAACAA-CCTC-AGCGGC-TTACGGCATGGAGATCAGTGCCGAGAAAACCAAGTTTGATGACC-AACAG-TACCGATGGCATCAACGCATGCAGACATCAAAG-AAAGTGGCGAG-AAACTCG-AGACCGTCAACAT--CTTCAAATATCTTGGATCAGTTATCTCAG-ATG-A-AGGATCAAGATC-AGAAATTCTCTACA-GAATCGCGCAAAC-AACAGCTGCGCT-GACAAAACTGAGG-----CCTATTTGGAATGTCAGAAACATCACATTCAGCTC-AAGG-TCAGAC-TGAT-GCCCTCACTGGTCACCTCAATATTTTTGTATGCC-TGTGAGTCGTGGAAACTGACA-GCAG--AAA--T-GGAGAGAAGGAT---T-CAGGT--AACTGAAAT--GA-GATGCTA-CCGCAGA--CTC--CTTGGCA-TCTCATACAAAGACCA-CA-CC-AC----AAAT-G-C-TGAGGTACG-GAACAGAGTCACAAACGCAG---TGGG--GCCTCATGTA-GATCTTCTGATTACAGGGAAGAGAC-G-AAAATTA-AAGCGGCATGG-TCATGTCACAAGATCCAT-GGGACTTGCCAAAACAATCCT-ACAAGGAACTGTACAAGGAAAGAGAAAGAGAGG-AAGA--CAGGGAATTGAG-AT----GA-AGGACAGCATCACAGA-GTGGACAAGAAAAGC-GATGAG--TGACAA-TCTAAAGAGGGAGGAGGACAGAG--AGAA----ATG-GCGACAGCTGGTTACC-AGAT--GCAGTGA-TGTCCCCACGG
gi|2 : GAAGTT--GAAGCACGCAATCAATTAGCACATGATTAAAGGGAATTCA-CAGGAGTGGATAACTATACCAGGAGAGCTAGTGGCATGCTAGTGCAGGG-------------GAGAGGCCATGATCAACGCCCTGACAACCAT-CTCCAAC--AAGATCT-G-CAGACAGGAAGAGTTGGCCAACACCATGGACACAATTCACTTGGTGATCACCAGCAT-C-CC-CAAGA-AAGGCAAACCTACAGCTGTTTTTGCCAAGAGATCTTACCCCGTGTCGACTATTAGGT---CCAATAAGTTCACCCC-A-GTAAAGTCATGTT--GAAGATCCTGCT-GAACAGACTAAAA-CCAC-AGGGCAGAGAAAGAT--C-TTGCGG-AAAAAGA-ACA-A-GCAG-GTTTC-AGAGCAGG---------G-CGC-----AGTAC-ACAA--C-A-GAACA----GATC---TTCAAC--CTTCGA----ATC---TGTTGCGAGAGGGTAC-CTCCA-ACACCAACAGAACCCGCATCT-ACC--ATGTCATT-TGTGGG-GAC----TTTAA-GACAGG-CCTTCGAAC-AG--AGCTCTGGGCATG-GCAGCT-TT-ATGGGC--AACCA--TTGAGGA---TG-AT--------AAC-ATC-AACGCCAGATCTTGATCAACAC--CATACA-------ACAACTATATGAGCAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGAAGCATAGGGGACTGGCTTCGG--GA---CAACGGC--------CGGGGTGTCAGACAAGGGCTGTTTGCTTTCCTCCAACTCTCCTTCAA-C-ATCTTCTTGGAAAA-GAATCATGACTGGACGCCACTAGAAGAGCACAATGTAAACAGTCAAG-CA-------TTGGAGGCAGCAACACCTAACAATTACCATCCTTGCGTTTTGCCGACGACATTGATGCCACTAATCAGG-GGGAA-GAACAAGAGCCTC-GC--CAAC-TTG-TAGAACGATTGG--AC-A-CCTC-AGCAGCGTTACGGCATGGAGATCAGTG-CGAGAAAACCAAG-CTGATGACCAAACAACCACCGAC-GCATCAAC----ACAGACATCAAAGTCCAGTGGCGAG-AAACTTGAAAACTGTCAAGAG--CTTCAAGTACCTTGGGTCAGTCGTATCAG-ATG---AGGATCAAAGCCTTGAAATTCTCT
gi|6 : ggaagaagaagaggaaccagaagggtgcaaaaccgtatagggcagttcagccaggaaaatcaaaagagtcaatgaaaggcaaaaagaaaattggattgagagaagtgcctcaagaaatagaaggacaactgtaatgaaaataacagcaaaaaggagcataccaccatagtgaaagaacctagcgttgtccatcgaaacagggcgcaccaaccacctacaggacaaagaagggaagtgcctgacgaggaacagggacattttgaaaacgatggacagagtactgcttcagaactgtacaaccacaaagccacaggaaaaacccagaaagctactgaacgtccctccagacataccaacatcgatgaccactcccatccttcgagaGAAGTT--GAAGCA-GCAATCAA--AGCA-CTGAAAAAAGGGAAGTCAGCAGGAGTGGATAAT-ATACCAGGAGAGCTAGTG-CAGACA--GG---GG-------------GAGAGGCCATGATCAACGCCCTGACAACCAT-CTGCAAC--AATATCC-GGCAGACAGGAGAGG-TGGC--AAACCATG-ACACAATCAC--TGGTGATCAC----GCTC-CCACAAGAGAAGGCAA-CATACAGCTGT----GCC-GAA----TTACCGC------ACTATTAG-----CTAATAAGT--CACCC-AAGTAAAGTCATGTTGGAAAGATC-TGCT-GAACAGACTGAAA-CCA---GG-CAGAGAA-G-T--CATTGC-G-AAT--GA-ACA-AAGCAGAGTTTC-AGAGCAGG---------GGCGC-----AG--T-ACAA--CCA-GAACA----GATC---TTCAACTCCT-CCAGATT-C----TGT-GCGAGAGG-TAC-CTCCA-ACACCAACAAACCTA---TCA-GCC--A---TGTC-TTTGTGAGATCGTCTTGAAGAA-GTG-CCTTCGACC-AG--AG-TCTGGC-ATAGGCAGCT-TTCATGGGCATAACCATTT-GAGGA---TGTAT--------AAC-ATCAA-CGCCA-ATCC-GATCAACAC--CATACA----ACAACTATAATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCcc
gi|3 : actgaacgtccctccagcaaccaacatcgatgaccatcccatccttcgagaaATTCAAGAAGCA-GCAGTCAA--AGCA-CTGAAGAAGGGGAAAT---CAGGAGTAAATAAC-ATCCCAAGAGAATTAGTA-CAGGCA--GG---GGGAGAGGCCATGATAAG---------CG----CTCTGACTATCAT-CTGCAAC--AAGATCT-GACAGACCAGAGAA--TGACCGACACCATGGACACAATCAC--TGGTGATTAC----ACTC-CC-CAAGA-AA--------------TAT----GTCAGAA-----TACCAC------ACCATCAG-C---CTGATAAGTC-ACCCC-A-GTAAGGTCATGTT--GAAGATAGTGCT-GAACAGACTGAAA-CCAC-AGG-CAGAGAG-GAT--CATTGCTG-AA---GA-GCA-G-TTAA-GTTTT----------------------------AG--C-ACAA--C-A-GAACA----AATC---ATCAAC--CT-C-AGGATAC----TGT-GCGAGAGG-TAC-CTCCA-ACTCCAGCAAAACC----TCT-ACC--A---CGTC-ATCGCG-GAT----TTTAA-AA-AAGCCCTTTAA-T-AG--GG-TT--------------------TGGGC--GA-AA--T-GAGGA---CATAA--------AAC-ATCAA-CGCCA-ACCT-GATCAACGT--CA-------TACAACAACTATATGA-CTGGGCCT---CCAGCG---C-AGTCTA------CCTCAA-TGACAGCATAGGGGACTTG-TTCAG--GA---CAACGGTCNNNNNNNNNNNNNN--NNNNNN-NNNNNNNNNNNNN-NNNNNNNNNN-NNNNNN-N-NNNNNNNNNN-NNN-NNNNNNNNNNNNNN-N-NNNNNNNNNNNNNNNNNG-GAACAGTC-AG-TA-------TTGGAGGCAG--------GACAATCACAA-ATTTGCTTTTTGTCGAT----TTGTCA-GACTAG-CA-G-GAGAA-GAACAGAAA-CTC-GCAAAA---TTAGTGGAACAACTGGACACAA-T----------------------AGATCAGTGTCGAGAAAACCAAG-ATGATGAC
gi|9 : aaaaaagaaagaaccagatggtgcaaaagagtacagagcagtctgcaagaaatctaaaaaggtttgaaaagggcaccaaaaaattggattgagaaacaatgccaaggaattgaagacgaacagcagcaaaaaggcataccaactaacgaaggacttgacatgcactaaacaagggcacaccgccaccatcattcaggataaacaaggaaaatgtctgacagaggaacaagacattttgaaacgatggacagaatactgctcaaacaataaagccacaggaaaccctggggtactaaacgtaccccagcaacgaacatcgatgaccaccgaatc-------------AAG---------CG----CTTTGACTATCAT-CTACAAC--AAGATCT-GACACAGGAAAG----TAGCCGACACCATGGACACAATCAC--TGGTGATTAC----ACTC-CC-CAAGA-AAGGCAA-CCTACACTTTT----GTCAGAA----TTACCCC------ACCATCGG-C---CTAATAAAT--CACCCCA-GTAAGGTTATGTT--GAAAATAGTGCT-AAACAGGCTGAAA-CCAC-AGG-CAGAGAA-GAG--TATTGCTG-AA---GA-GCA-G-GCAG-GTTTT-AGAGCAGG---------G-TAC-----AG--C-ACAA--C-A-AAACA----GATC---TTCAAA--CT-CATGA-TAC----TGT-GTGAGTGG-TTT-CTCCA-ACACCAGCAAAGCC----TAT-ACC--A---CATA-TTCGTG-GAT----TTTAA-AA-AAG-CCTTTGT-C-AG--GG-TCTG---GCACAAAGCT-TT-ACAGGC--AATTA--T-GA
gi|10 : at----CCCTGACAACCATCTTGCAACCAAAGATCTTGGCGGACAGGG-----TGGC---CACAATGGACACA-TCAC--TGG-GATT-C----ATGCTCC-CAAGA-AAG-CA--CCTACAGCTGT----GCCAGAA----TTACCGC------AC-ACTAT-TAGCCTATTA-GT--ACCCC----TAAAGTCATGTTG-AAAGATCCTGTT-AAACAGACTGAAAACCAC-G-G-CAGAGAAAGAT--AGCGG-TG-AA---GA-ACA-G--CAG-GTTTC-AGAGCAGG---------C-CGCC----AG--T-ACAA--C-AAGAACA-----ATC---TTCAAC--CT-C-AGAATAC----TGTTGCGAAGGG-TAC-CTCCA-ACAACAACAAGAAA----TCT-ACC--A---TGTCTTTTGTG-GAC----TTTAA-GA-AGG-CCTTCGACC-AG--AG-TCTG---
gi|7 : ggcaggggagaaggccgagcaacgTGTT--GAAGATC-TGCTTGAACAAGCTGAAA-CCACCAGG-CAGAGAA-TGTCTAATTGCGGCAA---GATACATA-GCAG-GTTTTCAGAGCATGTGTACTGCAG-TGCCAAGAAG--TTACAAGAC-A-GCACACAAAGATAACCTTCAAC--CT-----AGTATATACTGT-GCGAGAGG-TACTCGCTAGACACCA-CACAGTC----TCTGACCCTA---TGTC-TTTGTG-GACAA--TGTAG-AA-GG--TCTTCGA-CCAGTTGG-CC-------ATGCAGCTCTT-ATGGGC--A-CCA--T-TAGGAGAGTATGCTGACTAGTAAC-ATC-AACGCCA-ATCT-GATCAACAC--CATA------ACAACAACTAT-TGA-CAAGGCCTATTCCAGCGGCAT-AGTTTGAACCACCCTCAATCGGATGCATGGG--ACTGG-TTCGGCGGA----AACGGT--------CGGGTCC--AGACAA-GGCTGTATGCTTT-CTCC-ACTCT-CTTCAAACATTATCTTTGG-AAAAGATTCATGACTTGA-G-CACTAGAAGGGCACAATG-GAACAGTC-AGCTATTTAATCTTAGAGGCCA--------GACAATTACCA-CTTTGCGCTTGCCCTA-GACATgcat
gi|11 : C-----AG--C-ACTA--C-A-GAACA----GATC---TTCAAC--CT-C-AGGGTAT----TTT-GTGAGAGA-TAT-CTCCA-TTACCAGCAAGACC----TCA-ACC-------ACC-T---------------------------CTTT-A-C-AG--G-----------ACTCAA------AAGGGC--A--CA-----AGGC---TGTAT--------AACTGCA-A-TGTCA-ACCT-GATTAACGTCTTATACAGTGTA-AACA--TATATTA-TAAGACCA---CAAGTG---T-AGTGCA------CATCAG-CAGAATCACGGGAGACTGA-TTTAG--AAGTACAGCCGT---------AG-TAA--AAGAGA-AGTTGTCTACTCG-TATCCATCCT-CTTCAA-C-GTATTTCTGG-TAG-GAAAAATAGCTGAA-G-CACTTCAATGTCATAAAG-GGACAGTC-AG-AA-------TTGGAGGAAA--------GATAATCGCAA-
gi|4 : a----TTTAA-AA-GA--CTTTCGA-C-AG--AG-TCTG----CATGCAGCT-T--ATG--C--AACCA--T-GAGGA---TGTAT--------AAC-ATC-AACGCCA-ATCTTGATCAA------GCAC--CATACAACAACTATATTA-CAG--CCT---CCAGCG---CCAGT-TA------CCTCA--CGACA-CATAGGG-ACTGG-TTC-G--GA---CAACGGT--------CGGGTC---AGACAA-GGCTGTTTGCTTT-ATCCAACTCT-CTTCAA-C-ATCTCTTGGG-AAA-GAATCATGACTGAC-G-CACTAGAAGAGCACAATG-GAACAATC-AG-CA-------TTGGAGGCAG--------AA-GATTAC-A-ACTTGCGTTTTGCCGACAGCATTGACG-AGCTAG-CA-GTGGGAAGAAACAAGAG-CTC-GC--CAAACTTG-TAGAACGATTGGACACAACCCTCAAACAGC-GTACGGCATGGAGATCAGTGCCGAGAAAACCAAG-CTGATGA-C-AACAA-CACCGACGGCATCAAC----ACAGACATCCAAG-TCAGTGGCGAGAAAACTTG-AA--CGT--ACATAGCTTCAAGTACCTTGGGTCAGTCGTATCAGAATG-A-AGCATCAAAGCC-TGAAATTCTCTCCAGGAATCGCGCAAACAAACAGCCGCTCTCGAC-AAACTGAGG-----CC-GTTTGGATTGACAGAAA-ATCACGCTCAGATCAAAGA-TCAGACTTGATAGCGATCACTGGTCATCTCCATATTCCTGTACGCCATGTGAGTCA-------TGACA-ACAG--CAATTT-GGAGAGAAGAAT---CACAGGCA-AACTGAAAT--GA--ATAC-A-CCG-AGG--CTC--A--GGCA-TCTCCTACAAAA--CA-CA-TC--C-----AAT-GTT-TGAGGTACG-G---AGAGTCACAAAC-CAG---TGGG--GCCTCACAAA-GATCTTTTGACCACTGTGAAGAGAC-G-AAA--CG-AAGTGGTATGG--CATGTCACAAGATCCAC--AGACTTGCCAACACAATCCTGACAGAAACCTGTACAAG--AGGAGAAGGAAAGG-CAG---CAGAGAA-AGAG-AT----GG-AGGACAACATCACAGA-GTGGACCGGACAAGA-TATGAG--CGACAA-CTTGAGGAGGACAGAGAACAGAA--AGGG----ATG-GAAAGAACTGGTTGCC-AAATCAACAGTGGCTG-CCCAACGG
gi|14 : AAGAG-CTCAGC--CAAACTTGT-AGAACGATTGGACACAA-CCTC-AGCAGC-GTACGGCATGGAGATCAGTGCCGAGAAAACCAAG-CTGATGACC-AACAA-CA-CGACGGCATCAAC----ACAGACATCAAAG-TCAGTGGCGAG-AAACTTG-GAACTGTCAAGAG--CTT-AAGTACCTTGGGTCAGTCGTATCAG-ATGAA-AGGATCAAAGCC-TGAAATTTTCTCCA-GGATCGCGCAAAC-AA-AGCCGCtcgtcccgaccaagggataggata
gi|5 : CGAG-AAACTTG-GAACTGTCAAGAG--CTTCAAGAACCTTGGGTCAGTCGTATCAG-ATG-A-AGGATCAAAGCC-TGAAATTCTCTCCA-GGATCGCACAAAA-AACAGCCGCCCT-GACAAAACTGAAATGAAACCTGTTTGGAATGATAGAAATATCACGCTCAGATC-AAAG--CAGAC-TGAT-GCGATCACTGTTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ATT--TTGGAGAGAAGAAT---A-TAGGC--AACTGAATT--GA-GATGCTA-CCACAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TC-AC----AAAT-G-T-TGAGGTACG-GAACAGAGTCACAAACGCAG---T-GG--GCATCACAAA-GATCTTTTGACCACTGTTAAGAGACGG-AAAACTG-AAGTGGT-TGG-GCATGTCACAAGATCCAC-AGGACTTGCCAAGACAATCCT-ACAAGAAACTGTATAAGGAGGGAGAAGGAGAGG-CAGG--CAGAGAA-AGAGAAG----GG-AGGACAACATCACAGG-GTGGACCGGAATGAC-ACTGAG--CGACAACTTTGAGGAGGACAGAGAACAGAA--AGGA----ATG-GAGAGAGCTGGTTGCCAAGATCAACAGTGG-TGCCCCAACGG
gi|12 : -ATG-ACAAGATCAAAGCC-TGAAATTCTCTCCA-GGATCGCGCAAAC-AACAACCCCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATC-AAAGATCAGAC-TGAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-CGTGAGTCATGGACACTGACA-GCAG--ATT--T-GGAGAGAAGAAT---A-CAGGC--AAGAGAAAT--GA-GATGCTA-CCGCAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TC-AC----AAAT-G-C-TGAGGTACG-TAACACAGTCACAAACGCAG---TGGG--GCCTCACAAA-GATCTTTTGACCACTGTGAAGAGAT-G-tcaccaagggataggatag
gi|27 : G-A-AGGATCAAAGCC-TGAAATTCTCTCCA-AGTTCGCg
gi|8 : C-TGTGAGTCATGGACACTGACACGCAGTCAAT--T-GGAGAGATAGATATAC-AAGGTCGAACTGAAATATGATGATGCTAACCGCAGAGTCTCGGCTAGGCAATCTCCT-TAAAATGCA-CAATC-AC----AAATTG-CATGAGGTACGCGAACAGAATCCAAAACGCAAGATTGGGTTGCCTCACAAAAGATCTTTAGACCATGTGGAAGAGAC-GGAAAACTGCAAGTGGTATGGGCCATGTCACAAGATCCACAGGGACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGG-AGGAGAAGGAGAGGCAGGC--CAGAGAA-AGAG-AT----GAGAGGACGACATCACAGAGGTGGACCGGAAAGACAGCTGAGCCCGACAA-CTTGAGGAGGACAGAGAACAGAA--AGGG----ATGAGAGA-AACTGGTTGCCAAGATCAACAGTGG-TGCCCCAACGG
gi|13 : -TGTGAGACATGGATATTAAT--GCCG--AGA--C-AGAGAGAAAGATA--T-CAG-T--CACGGAGAT--TA-GAAGTTA-CAGACCA--CTA--CTCGGCA-TCTCACGCAAAGACAT-CA-CCTGCGAGGAAAT-G-T-TAAGtcgtctcgtcccgaccaagggataggatag
gi|19 : ttGAAGGAT---T-CAGGC--AACAGAGAT--GA-AATGCTG-CCGCAGA--CTC--CTTTGCA-TCTCATACAAAGACCG-CA-TC-AT----Acagattttaaaatgttattggaccctacgacaaagtcttgtccaatgttaagattatacatcttgaagttgtataggctggtctcaagatccttagggcttgccaagacagtcccccacgag
gi|23 : TACAA-GATTAACA-TC-AT----AAAT-G-C-TGAGGTACG-GAACAGAGTCACAAA
gi|22 : A-GATCTTTTGACCACTGTGAAGAGAC-G-GAAATTG-AAGTGGTATGG-GCATGTCACAAGATCC
gi|16 : AAACTG-AAGTGGTATGG-ACATGTCACAA-ATCCTTCAGGACTCACCAAGATAGTCCT-ACAGG-----GTACAATGAAAG-GAGGGAGAAG-AAAAGTCAGACAAAAGAA-ACGCTGGG-AAGACAATATCCGGGA-GT
gi|13 : ggattacgaaaagctctttaccacTTG-AAGTTGTATAG-GCTGGTCTCAAGATCCTT-AGGGCTTGCCAAGACAGTCCtgtctgagtgacact
gi|15 : tttgtgagacatggatattaatgccgagacagagagaaagatatcagtcacggagattagaagttacagaccactactcggcatctcacgcaaagacatcacctgcgaggaaatgttaagcagattttaaaatgttattggaccctacgacaaagtcttgtccaatgttaagattatacatcTACAAGGAGGGAGAAAGAGAGG-CAGG--CAGATAAA-GAG-AT----GG-GAGACAACATCACAGA-ATGGACCGGAAAGAC-ACTGGG--CGACAA-CTTAAGGAGGACAGAGAACAGAA--AGGG----ATG-GAGAGAACTGGTTGCCAAGATCAACAGTGG-TGCCCCAACGGcccacgag
gi|17 : AACAACACAGA-GTGGACCGGAAAGAC--ATGAG--CGACAA-CTT-------GAGGAGGACAGAGAAAGAAAGGGATG-GAGAGAACTGGTTGCCAAGATCAACAGTGG-TGCCCCAACGGtcgtcccgaccaagggataggtg
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AGAAAGCAGAGAACAGAAAGGGGTGGAGAGAACTGGTTGCCAAGATCAACAGTGGTGCCCCAACGGTCGTCCCGACCAAGGGATAGGATAG
Unaligned ( gi|20 ): GGAGAGAACTGGTTTGCCAAGATCAACAGTTTGGTGGCCCCAACGGTCGTTCCTGACCAAGGATAGGATAG
Unaligned ( gi|21 ): ATGGAGAGAACTGGTTGCCAAGATCAACAGTGGTGCCCCACGGTCGTCCTCACCAAGGGATAGGATAG
Unaligned ( gi|24 ): ACAGTGGTGCCCCAACGGTCGTCCCGACCACGGGATAGGTGATAG
Unaligned ( gi|25 ): GAACAGGACATTTTGAAGCGATGGACAGAGTACTGCTCAGAACT
Unaligned ( gi|26 ): CAACAGTGGTGCCCCAACGGTCGTCCCGACCAAGGGATAGGAT
Unaligned ( gi|28 ): TGCCCCAACGGTCGTCCCGACCAAGGGATAGGTGA
Unaligned ( gi|29 ): AAGGGAAGTCAGCAGGAGTGGATAATATAC
Alignments
lowQualScore : 1 11 1 2 1 1111 22 11111 1111 1111 1111111111 22 11 222 1 111 111 2222222222222222222 11 1111 1 1111 11 1 1111111 11111 3333333333 1111 11 22222222 111 222222 111 11111 111111 111 22222222222222222 2222222 22222222 11 11 1 1 1 1 11 1 2222 1 11 1 22222 22 1 1 11 111 111 111 1 1111 111
lowQualScore : 0 0 33 0 1 1 4 8 0 0 8 7777 0 66 22 4 6 99 6 33333 66 6 6 6 99 6 6 6 2 6 3 1 4444 4444 9999999999 6 3 1 99 1 33 999 5 5 999 1 0 000 4 555 5 5 5 99 5 77 5 3333333333333333333 7777 11 5 0000 888 66 888 9999 3 0 5 5 5 2 0000 11 66 0 0 3 66 5 2222222 4 33333 999 4 66 4 0000000000 0000 66 44 11 00000000 77 5 5 5 5 5 444 666666 0 5 2 000 00000 0 666666 88 3 2 4 6 000 2 88888888888888888 6 6 0 1 6 66 5 0 6 6 4 77 6 6 6 6 0 6 6 6 1111111 44444444 1 1 55 99 11 0 0 0 0 8 8 11 8 0 8 8 8 3 8 22 0 2 2 1111 0 8 44 3 6 999 5 6 8 0 0 3 55555 3 7 33 0 0 6 1 6 99 1 6 5 5 22 77 5 5 1 77 5 5 77 888 77 1 5 0 77 5 5 1 5 999 000 5 0 6 111 111 6 6 5 0 0 0 5 5 555 11 5 3 5 5 6 6 2 6 3 6 9 6 4444 6 5 6 888 99 6 4 4 55 3 3
lowQualScore : . . .. . . . . . . . . .... . .. .. . . .. . ..... .. . . . .. . . . . . . . .... .... .......... . . . .. . .. ... . . ... . . ... . ... . . . .. . .. . ................... .... .. . .... ... .. ... .... . . . . . . .... .. .. . . . .. . ....... . ..... ... . .. . .......... .... .. .. .. ........ .. . . . . . ... ...... . . . ... ..... . ...... .. . . . . ... . ................. . . . . . .. . . . . . .. . . . . . . . . ....... ........ . . .. .. .. . . . . . . .. . . . . . . . .. . . . .... . . .. . . ... . . . . . . ..... . . .. . . . . . .. . . . . .. .. . . . .. . . .. ... .. . . . .. . . . . ... ... . . . ... ... . . . . . . . . ... .. . . . . . . . . . . . . .... . . . ... .. . . . .. . .
lowQualScore : 7 0 88 0 0 0 0 0 6 0 0 0000 8 22 88 0 7 22 7 55555 22 7 7 7 22 7 7 7 5 7 2 0 2222 2222 3333333333 7 7 7 22 7 66 333 7 7 444 4 1 999 9 777 7 7 7 77 7 44 7 5555555555555555555 9999 99 0 6666 888 99 222 8888 2 0 0 0 0 2 6666 99 99 2 0 1 99 0 7777777 4 66666 999 4 11 4 7777777777 1111 99 66 99 77777777 99 7 7 7 7 7 444 333333 7 7 3 000 33333 1 444444 33 0 5 2 7 222 5 55555555555555555 7 7 2 0 7 88 2 8 7 7 0 77 7 7 7 7 2 7 7 7 7777777 22222222 0 0 55 66 00 0 0 0 0 0 0 66 0 8 0 0 0 2 0 55 0 5 5 2222 0 0 44 8 7 444 7 7 0 2 0 2 00000 2 0 22 0 0 7 0 7 22 0 7 7 7 44 99 7 7 0 99 7 7 99 333 99 9 7 7 99 0 0 4 7 444 000 7 1 7 777 777 7 7 0 1 4 4 0 0 111 99 7 0 7 7 7 7 2 7 7 7 8 7 2222 7 7 7 222 22 7 4 4 00 6 6
consensus : GAAGTCGAAGCA-GCAATCAA--AGCAC-TGAAGAAAGGGAAGTCAGCAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGC-AG----GGGGAGAGGCCATGATCAACGCCCTGACNACCATCT-GCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--GC-TCCC-CAAGA-AAGGC-AACCTACAGCTG----TGCCAGAA----TTACCG--C------ACCATCA-GCCTAATAAGTC-ACCCCAGTAAGGTCATGTTG--AAGAT-CGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AAGATC--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---CTTCAA--CCT-C-AG-A-ATACTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACC----TCT--ACC--ACGTC-TTCGC--G-GA----C--TTTAA-AA-GGG-CCTTCG-A-C-AG--GG-TCT--G-CAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGA--------CG--TA-TAACATCAACGCCA-ATC-T-GATCAA-CGCC--ATACA---T--ACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGNAGCATAGGGGACTGG-TTCGG--GACAACGGTC--------G-GGTCG--A-GACAA-GGCTGTTTGCTT-T-CTCCAACTCT-CTTCAA-CATC-TTTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGAGCACAATG-GAACAGTC-AGC-A-------TTGGAGGCAG--------GACAATCACAA-NCTTGCGTTTTGCCGACGACATTGACG-GACTAG-CA-G-GGGAAGAA-CAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CACCGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANTT-GGAGAGA-AGG-ATA-CAGG--C-AA-CTGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAAACTG-AAGTGGTATGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAAA-GAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGA-AAGAC-GCTGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
Reference ( family-389 ) : GAAGTCGAAGCA-GCAATCAA--AGCAC-TGAANAAAGGGAANTCA-CAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGC-AG----GGGGAGAGGCCATGACGAACGCCCTGACAACCATCT-GCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--AC-TCCC-CAAGA-AAGGC-AACCTACAGCTG----TGCCAGAA----TTACCG--C------ACCATTA-GCCTAATAAGT--ACCCCAGTAAAGTCATGTTG--AAGAT-C-TGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AAGATC--ATTGCTG---AA-GA-AC-A-GGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---CTTCAA--CCT-C-AG-A-GTACTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACC----TCT--ACC--ACGTC-TTCGT--G-GA----C--TTTAA-AA-GGG-CCTTCG-A-C-AG--GG-TCT--G-CAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGA--------TG--TA-TAACATCAACGCCA-ATC-T-GATCAA-CGCC--ATACA---T--ACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGAAGCATAGGGGACTGG-TTCGG--GACAACGGTC--------G-GGTCG--A-GACAA-GGCTGTNTGCTT-T-CTCCAACTCT-CTTCAA-CGTN-TCTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGGGCACAATG-GAACAGTC-AGC-A-------TTGGAGGCAG--------GACAATTACNA-NCTTGCGTTTTGCCGACGACATTGACG-NACTAG-CA-G-GGGAAGAA-CAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CACCGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAG-TCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANTT-GGAGAGA-AGG-ATN-CAGG--C-AA-CNGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAAACTG-AAGTGGTATGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAGGAAACTGTACAAGGAAGGAGAAGGAGAGGCAGGC-AGAGAAAAGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGA-AAGAC-GCTGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|1 : GAATTCGAAGCA-GCAATTAA--AACAA-TGAAGAAGAGAAAATAAGCAGAAGTGGATAAC-ATCCCCGGAGAATTAGTA-CAAGC-TT----GGGAAG-------------TTCTCTGACTATCATTT-GCAAC--AAGATCT-GGCAGAAAAGAGAA--TGGCTGACACCATGGACACAA-TCAA-TGGTGATT-AC--AT-TCCC-CAAGA-AAGGC-AACCAACAACTA----TGTCAGAA----TTATCG--C------ACCATCA-TTCTAATAAGT--AAACCGGTAAGGTCATGTTA--AAGAT-AGTACT-GAACAGTCTG-AAACCAC-A-AGCAGGG-GAGATA--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-TAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---GTTTAA--CCT-CGAG-A-GTATTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACT----TCT--ACC--ACATC-TTTGC--G-GA----T--TTTAA-AA-GGG-CCTTTG-A-C-AG--GG-TCT--GATAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGA--------CA--TA-CAACACCA-TGTCA-ATC-T-GATCAA-CGTT--ATACA---TGTACAACAACTATATGA-CAGGACCT---CCAATG---C-AGTCTA------CCTCAA-CGGCAGCATGGGGGACTGG-TTCAG--GACAACGGTT--------A-GATTG--A-GGCAA-GGTTGTTTGATC-T-CTCCCACTCT-CTTCAA-CTTC-TTCTTAG-AAA-GAATCATAACTGGA-G-CACTGGAAGACCACATTG-GAACAGTC-AGT-A-------TTGGAGGCAG--------GGCAATCACAA-ACTTGTGTTTTGCCGATGACATTGACG-GACTAG-CA-G-GAGAAAAA-CAGGAA-CTC-GCCA---TTATTGGAACGGCTGGAAACAACC-TCAG-CGGCT-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGTTTGATGACC-AACAG-TACCGATGGCATCAACGCATGCAGACATCAAAGA-AAGTGGCGAGAAA-CTCG-AGACCGTCAACATCTTCAAATATCTTGGATCAGTTATCTCAGA-TG-A-AGGATCAAGATC-AGAAATTCTCTACAGAA-TCGCGCAAACAA-CAGCTGCGCT-GACAAAACTGAGG-----CCTATTTGGAATGTCAGAAACATCACATTCAGCTCAAGG-TCAGACT-GAT-GCCCTCACTGGTCACCTCAATATTTTTGTATGCC-TGTGAGTCGTGGAAACTGACA-GCAG--AAAT-GGAGAGA-AGG-ATT-CAGG--T-AA-CTGAAAT--GA-GATGCTA-CCG--CAGA--CTC--CTTGGCA-TCTCATACAAAGACCA-CA-CCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ATGTA-GATCTTCTGATTACAGGG-AAGA-GAC-G-AAAATTA-AAGCGGCATGGTC-ATGTCACAAGATCC-ATGGG-ACTTGCCAAAACAATCCT-ACAAGGAACTGTACAAGGAAAGAGAAAGAGAGGAAGAC-AGGGAATTGAG-AT----G-AAGGACAGCATCACAGAG-TGGACAAGA-AAAGC-GATGAGT--GACAAT-CTAAAGAGGGAGGAGGACAGAGAGAAATGGCGAC-AGCTGGTT-ACC-AGAT--GCAG--TGA-T-GTCCCCACGG
gi|10 : GGC-AG----GGGAGAAGGCC--GAGCAACGCCCTGACAACCATCTTGCAACCAAAGATCTTGGCGGACAGG----G-TGGCC-ACA--ATGGACACA--TCAC-TGG-GATTCAT--GC-TCCC--AAGA-AAG-C-A-CCTACAGCTG----TGCCAGAA----TTACCGCAC------ACTATTA-GCCT-ATTAGT--ACCCC--TAAAGTCATGTTGA-AAGATCC-TGTT-AAACAGACTGAAAACCAC---GGCAGAGAAAGAT---AGCGGTG---AA-GA-AC-A--GCAG-GTTT-CAGAGCA-GG---------CCGCC-----AG--T-ACAA--CAAGAACA-----AT---CTTCAA--CCT-C-AG-A-ATACTGTTGCGAAG-GGTAC-CTCCA-ACAACAACAAGAAA----TCT--ACC--ATGTCTTTTGT--G-GA----C--TTTAA-GA-AGG-CCTTCG-ACC-AG--AG-TCT--G-
gi|11 : -C-----AG--C-ACTA--C-AGAACA----GAT---CTTCAA--CCT-C-AG-G-GTATTT-TGTGAGA-GATAT-CTCCA-TTACCAGCAAGACC----TCA--ACC--AC--C-T--------------C--TTTA------------------C-AG--G----------AC--TCAA------AAGGGC--A--CA----AGGC--------TG--TA-TAACTGCAATGTCA-ACC-T-GATTAA-CGTCTTATACAGTGT--A-AACA--TATATTA-TAAGACCA---CAAGTG---T-AGTGCA------CATCAG-CAGAATCACGGGAGACTGA-TTTAG--AAGTACAGCC--------GTAGTAA--AAGAGAA-G-TTGTCTACTCGT-ATCCATC-CT-CTTCAA-CGTA-TTTCTGG-TAG-GAAAAATAGCTGAA-G-CACTTCAATGTCATAAAG-GGACAGTC-AGA-A-------TTGGAGGAAA--------GATAATCGCAA-gcat
gi|12 : aA-TG-ACAAGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAACCCCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-CGTGAGTCATGGACACTGACA-GCAG--ATTT-GGAGAGA-AGA-ATA-CAGG--C-AA-GAGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-TAACACAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAT-G-
gi|13 : -TGTGAGACATGGATATTAAT--GCCG--AGAC-AGAGAGA-AAG-ATATCAGT--C-A--CGGAGAT--TA-GAAGTTA-CAGACCA----CTA--CTCGGCA-TCTCACGCAAAG---A-CA-TCAC--CT-GC---GAGGAAATGTT-AAGCAGATTTTAAAATGTTAT---TGGA--CCCTACGACAAA-G---TCTTGTCCAATGTT-AAGATTAT-A-CATCTTG-AAGTTGTATAGGC-TGGTCTCAAGATCC-TTAGG-GCTTGCCAAGACAGTCCC-CCACGAg
gi|14 : ttAAGAG-CTCAGCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CA-CGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTT-AAGTACCTTGGGTCAGTCGTATCAGA-TGAA-AGGATCAAAGCC-TGAAATTTTCTCCAGGA-TCGCGCAAACAA--AGCCGCg
gi|15 : TACAAGGAGGGAGAAAGAGAGGCAGGC-AGATAAA-GAG-AT----G-GGAGACAACATCACAGAA-TGGACCGGA-AAGAC-ACTGGGC--GACAAC-TTAAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|16 : AAA-GCTCTTT--ACCAC-----------------AAACTG-AAGTGGTATGGAC-ATGTCACAA-ATCCTTCAGG-ACTCACCAAGATAGTCCT-ACAGGGTACAATGAAAGGAGGGAGAAGAAAAGTCAGAC-----AAAAGAA-ACGCTGG-GAAGACAATATCCGGGAG-Ttcgtcccgaccaagggataggtg
gi|17 : ggattacgaAACAACACAGAG-TGGACCGGA-AAGAC-A-TGAGC--GACAAC-TTGAGGAGGACAGAGAA-AGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtgtctgagtgacact
gi|18 : GAAAGCAGAGAACAGAAAGGGGTGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtcgtcccgaccaaggatagg
gi|19 : aGA-AGG-ATT-CAGG--C-AA-CAGAGAT--GA-AATGCTG-CCG--CAGA--CTC--CTTTGCA-TCTCATACAAAGACCG-CA-TCATAtcgtcccgaccaagggataggatag
gi|2 : GAAGTTGAAGCACGCAATCAATTAGCACATGATTAAAGGGAATTCA-CAGGAGTGGATAACTATACCAGGAGAGCTAGTGGCATGCTAGTGCAGGGGAGAGGCCATGATCAACGCCCTGACAACCATCT-CCAAC--AAGATCT--GCAGACAGGAAGAGTTGGCCAACACCATGGACACAATTCACTTGGTGATC-ACCAGCATCCC-CAAGA-AAGGCAAACCTACAGCTGTTTTTGCCAAGAGATCTTACCC--CGTGTCGACTATTAGGTCCAATAAGTTCACCCCAGTAAAGTCATGTTG--AAGATCC-TGCT-GAACAGACTA-AAACCAC-AGGGCAGAGAAAGATC---TTGCGGAAAAA-GA-AC-A-AGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AGTAC-ACAA--C-AGAACA----GAT---CTTCAA--CCT-T-CG-A-AT-CTGTTGCGAGAGGGTAC-CTCCA-ACACCAACAGAACCCGCATCT--ACC--ATGTCATTTGTGGG-GA----C--TTTAA-GACAGG-CCTTCGAA-C-AG--AGCTCTGGG-CATG-GCAGCT-TT-ATGGGC--AACCAT-TGAGGA--------TG---A-TAACATCAACGCCAGATCTT-GATCAA-CAC------CA---T--ACAACAACTATATGAGCAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGAAGCATAGGGGACTGGCTTCGG--GACAACGGCC--------G-GGGTGTCA-GACAAGGGCTGTTTGCTT-TCCTCCAACTCTCCTTCAA-CATC-TTCTTGGAAAA-GAATCATGACTGGACGCCACTAGAAGAGCACAATGTAAACAGTCAAGC-A-------TTGGAGGCAGCAACACCTAACAATTACCATCCTTGCGTTTTGCCGACGACATTGATGCCACTAATCAGG-GGGAAGAA-CAAGAGCCTC-GCC-AACTTGT-AGAACGATTGGAC---ACC-TCAG-CAGCGTTACGGCATGGAGATCAGTG-CGAGAAAACCAAGCT-GATGACCAAACAACCACCGAC-GCATCAACACA----GACATCAAAGTCCAGTGGCGAGAAA-CTTGAAAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG---AGGATCAAAGCCTTGAAATTCTCTCC
gi|20 : ggaagaagaagaggaaccagaagggtgcaaaaccgtatagggcagttcagccaggaaaatcaaaagagtcaatgaaaggcaaaaagaaaattggattgagagaagtgcctcaagaaatagaaggacaactgtaatgaaaataacagcaaaaaggagcataccaccatagtgaaagaacctagcgttgtccatcgaaacagggcgcaccaaccacctacaggacaaagaagggaagtgcctgacgaggaacagggacattttgaaaacgatggacagagtactgcttcagaactgtacaaccacaaagccacaggaaaaacccagaaagctactgaacgtccctccagacataccaacatcgatgaccactcccatccttcgagaGGAGAG-AACTGGTTTGCCAAGATCAACAGTTTGG-TGGCCCCAACGG
gi|21 : ATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCC-ACGGtcgttcctgaccaaggataggatag
gi|22 : A-GATCTTTTGACCACTGTG-AAGA-GAC-G-GAAATTG-AAGTGGTATGGGC-ATGTCACAAGATCC-tcgtcctcaccaagggataggatag
gi|23 : TACAA-GATTAACA-TCATAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAA
gi|24 : ACAG--TGG-T-GCCCCAACGG
gi|26 : CAACAG--TGG-T-GCCCCAACGGtcgtcccgaccacgggataggtgatag
gi|27 : G-A-AGGATCAAAGCC-TGAAATTCTCTCCAAGT-TCGCtcgtcccgaccaagggataggat
gi|29 : AAGGGAAGTCAGCAGGAGTGGATAAT-ATAC
gi|3 : GAAGCA-GCAGTCAA--AGCAC-TGAAGAAGGGGAAATCA---GGAGTAAATAAC-ATCCCAAGAGAATTAGTA-CAGGC-AG----GGGGAGAGGCCATGATAAGCGCTCTGACTATCATCT-GCAAC--AAGATCT-GACAGACCAGAGAA--TGACCGACACCATGGACACAA-TCAC-TGGTGATT-AC--AC-TCCC-CAAGA-AA--------------TA----TGTCAGAA----T-ACCA--C------ACCATCA-GCCTGATAAGTC-ACCCCAGTAAGGTCATGTTG--AAGAT-AGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AGGATC--ATTGCTG---AA-GA-GC-A-GTTAA-GTTT------------------------T-----AG--C-ACAA--C-AGAACA----AAT---CATCAA--CCT-C-AG-G-ATACTG-TGCGAGA-GGTAC-CTCCA-ACTCCAGCAAAACC----TCT--ACC--ACGTC-ATCGC--G-GA----T--TTTAA-AA-AAGCCCTTTA-A-T-AG--GG-TT---------------------TGGGC--GA-AA--TGAGGA--------CA--TA-AAACATCAACGCCA-ACC-T-GATCAA-CGT------CA---T--ACAACAACTATATGA-CTGGGCCT---CCAGCG---C-AGTCTA------CCTCAA-TGACAGCATAGGGGACTTG-TTCAG--GACAACGGTCNNNNNNNNN-NNNNN--N-NNNNN-NNNNNNNNNNNN-N-NNNNNNNNNN-NNNNNN-NNNN-NNNNNNN-NNN-NNNNNNNNNNNNNN-N-NNNNNNNNNNNNNNNNNG-GAACAGTC-AGT-A-------TTGGAGGCAG--------GACAATCACAA-ATTTGCTTTTTGTCGAT----TTGTCA-GACTAG-CA-G-GAGAAGAA-CAGAAA-CTC-GCAAAATTAGT-GGAACAACTGGACACAAT-----------------------AGATCAGTGTCGAGAAAACCAAGAT-GATGAC
gi|4 : aaaaaagaaagaaccagatggtgcaaaagagtacagagcagtctgcaagaaatctaaaaaggtttgaaaagggcaccaaaaaattggattgagaaacaatgccaaggaattgaagacgaacagcagcaaaaaggcataccaactaacgaaggacttgacatgcactaaacaagggcacaccgccaccatcattcaggataaacaaggaaaatgtctgacagaggaacaagacattttgaaacgatggacagaatactgctcaaacaataaagccacaggaaaccctggggtactaaacgtaccccagcaacgaacatcgatgaccaccgaatcattcaa--TTTAA-AA-GA--CTTTCG-A-C-AG--AG-TCT--G-CAT--GCAGCT-T--ATG--C--AACCA--TGAGGA--------TG--TA-TAACATCAACGCCA-ATC-TTGATCAAGCACC--ATACA---------ACAACTATATTA-CA--GCCT---CCAGCG---CCAGTT-A------CCTCA--CGACA-CATAGGG-ACTGG-TTCGG---ACAACGGTC--------G-GGTC---A-GACAA-GGCTGTTTGCTT-T-ATCCAACTCT-CTTCAA-CATC-TCTTGGG-AAA-GAATCATGACTGAC-G-CACTAGAAGAGCACAATG-GAACAATC-AGC-A-------TTGGAGGCAG--------AA-GATTACAA--CTTGCGTTTTGCCGACAGCATTGACG-AGCTAG-CA-GTGGGAAGAAACAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACCCTCAAACAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGAC--AACAA-CACCGACGGCATCAACACA----GACATCCAAGT-CAGTGGCGAGAAAACTTG--AAC-GTACATAGCTTCAAGTACCTTGGGTCAGTCGTATCAGAATG-A-AGCATCAAAGCC-TGAAATTCTCTCCAGGAATCGCGCAAACAAACAGCCGCTCTCGACAAA-CTGAGG-----CC-GTTTGGATTGACAGAAA-ATCACGCTCAGATCAAAGATCAGACTTGATAGCGATCACTGGTCATCTCCATATTCCTGTACGCCATGTGAGTCATG-ACA---ACA-GCA---ATTT-GGAGAGA-AGA-ATCACAGG--C-AAACTGAAAT--GA--ATAC-A-CCG---AGG--CTC----AGGCA-TCTCCTACAAAA--CA-CA-TC-CAA-T-GT-TTGAGG---TACG-GA---GAGTCACAAAC--CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAA--CG-AAGTGGTATGG-C-ATGTCACAAGATCC-ACAG--ACTTGCCAACACAATCCTGACAGAAACCTGTACAAG--AGGAGAAGGAAAGGCAG-C-AGAGAAA-GAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGACAAGAT-A-TGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAAAG-AACTGGTT-GCCAA-ATCAACAG--TGGCT-G-CCCAACGG
gi|5 : CGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGAACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCACAAAAAA-CAGCCGCCCT-GACAAAACTGAAATGAAACCTGTTTGGAATGATAGAAATATCACGCTCAGATCAAAG--CAGACT-GAT-GCGATCACTGTTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ATTTTGGAGAGA-AGA-ATA-TAGG--C-AA-CTGAATT--GA-GATGCTA-CCA--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GT-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG---CAT-C-ACAAA-GATCTTTTGACCACTGTT-AAGA-GACGG-AAAACTG-AAGTGGT-TGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGAAACTGTATAAGGAGGGAGAAGGAGAGGCAGGC-AGAG-AAAGAGAAG----G-GAGGACAACATCACAGGG-TGGACCGGA-ATGAC-ACTGAGC--GACAACTTTGAGGAGGACAGAGAACAGAAAGGAATGGAGAG-AGCTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtcgtcccgaccaagggataggata
gi|6 : GAAGTTGAAGCA-GCAATCAA--AGCAC-TGAAAAAAGGGAAGTCAGCAGGAGTGGATAAT-ATACCAGGAGAGCTAGTG-CAGAC-AG----GGGGAGAGGCCATGATCAACGCCCTGACAACCATCT-GCAAC--AATATCC-GGCAGACAGGAGAGG-TGGC--AAACCAT-GACACAA-TCAC-TGGTGATC-AC--GC-TCCCACAAGAGAAGGC-AACATACAGCTG----TGCC-GAA----TTACCG--C------ACTATTA-G-CTAATAAGTC-ACCCAAGTAAAGTCATGTTGGAAAGAT-C-TGCT-GAACAGACTG-AAAC--C-A-GGCAGAG-AAG-TC--ATTGC-G---AATGA-ACAA-AGCAGAGTTT-CAGAGCAGGG---------GCG-C-----AG--T-ACAAC-C-AGAACA----GAT---CTTCAACTCCTCC-AG-A-TT-CTG-TGCGAGA-GGTAC-CTCCA-ACACCAAC-AAACC----TATCAGCC--ATGTC-TTTGT--GAGATCGTC--TTGAAGAA-GTG-CCTTCG-ACC-AG--AG-TCTG-G-CATAGGCAGCT-TTCATGGGCATAACCATTTGAGGA--------TG--TA-TAACATCAACGCCA-ATC-C-GATCAA-CACC--ATACA------ACAACTATAATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCtcaccaagggataggatag
gi|7 : actgaacgtccctccagcaaccaacatcgatgaccatcccatccttcgagaaTGTTG--AAGAT-C-TGCTTGAACAAGCTG-AAACCACCA-GGCAGAG-AATGTCTAATTGCGGC--AA-GATAC-ATAGCAG-GTTTTCAGAGCA-TGTGTACTGCAGTG-CCAAGAAG--TTACAAGAC-AGCACACAAAGATAACCTTCAA--CCT---AGTATATACTG-TGCGAGA-GGTACTCGCTAGACACCA-CACAGTC----TCTG-ACCCTATGTC-TTTGT--G-GA----CAATGTAG-AA-GG--TCTTCG-A-CCAGTTGG-CC------AT--GCAGCTCTT-ATGGGC--A-CCA--TTAGGAGAGTATGCTGACTAGTAACATCAACGCCA-ATC-T-GATCAA-CACC--ATA--------ACAACAACTAT-TGA-CAAGGCCTATTCCAGCGGCAT-AGTTTGAACCACCCTCAATCGGATGCAT--GGGACTGG-TTCGGCGGA-AACGGTC--------G-GGTCC--A-GACAA-GGCTGTATGCTT-T-CTCCA-CTCT-CTTCAAACATTATCTTTGG-AAAAGATTCATGACTTGA-G-CACTAGAAGGGCACAATG-GAACAGTC-AGCTATTTAATCTTAGAGGCCA--------GACAATTACCA-CTTTGCGCTTGCCCTA-GACAT
gi|8 : C-TGTGAGTCATGGACACTGACACGCAGTCAATT-GGAGAGATAGATATA-CAAGGTCGAA-CTGAAATATGATGATGCTAACCG--CAGAGTCTCGGCTAGGCAATCTCCT-TAAAATGCA-CAATCACAAATTGCAT-GAGG---TACGCGAACAGAATCCAAAACG-CAAGATTGGGTTGCCT-C-ACAAAAGATCTTTAGACCA-TGTGGAAGA-GAC-GGAAAACTGCAAGTGGTATGGGCCATGTCACAAGATCC-ACAGGGACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGA-GGAGAAGGAGAGGCAGGCCAGAGAAA-GAG-AT----GAGAGGACGACATCACAGAGGTGGACCGGA-AAGACAGCTGAGCCCGACAAC-TTGAGGAGGACAGAGAACAGAAAGGGAT-GAGAGAAACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|9 : AGCGCTTTGACTATCATCT-ACAAC--AAGATCT-GACA--CAGGA-AAG-TAGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--AC-TCCC-CAAGA-AAGGC-AACCTACACTTT----TGTCAGAA----TTACCC--C------ACCATCG-GCCTAATAAATC-ACCCCAGTAAGGTTATGTTG--AAAAT-AGTGCT-AAACAGGCTG-AAACCAC-A-GGCAGAG-AAGAGT--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-TAGAGCA-GG---------GTA-C-----AG--C-ACAA--C-AAAACA----GAT---CTTCAA--ACT-C-AT-G-ATACTG-TGTGAGT-GGTTT-CTCCA-ACACCAGCAAAGCC----TAT--ACC--ACATA-TTCGT--G-GA----T--TTTAA-AA-AAG-CCTTTG-T-C-AG--GG-TCTG-G-CAC--AAAGCT-TT-ACAGGC--AATTA--TGAtcgtctcgtcccgaccaagggataggatag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): GAACAGGACATTTTGAAGCGATGGACAGAGTACTGCTCAGAACT
Unaligned ( gi|28 ): TGCCCCAACGGTCGTCCCGACCAAGGGATAGGTGA
Alignments
lowQualScore : 1 11 1 1 1111 11111 1111 1111 111111 11 1 111 111 2222222222222222222 11 1111 1 1111 11 1 111 1111111 11111 3333333333 1111 11 2222222222 111 222222 111 11111 111111 111 22222222222222222 2222222 22222222 11 11 1 1 1 1 11 1 2222 1 11 1 22222 1 1 1 111 111 111 1111 111
lowQualScore : 0 0 33 0 0 1 8 0 0 8 7777 0 66 1 1 6 99 6 33333 66 6 6 6 99 6 6 6 2 6 3 1 4444 4444 1 999999 99 6 3 6 2 44 77 5 22 5 5 999 1 0 000 4 555 5 5 5 99 5 77 5 3333333333333333333 7777 11 5 0000 888 66 5 888 0 0 5 5 5 2 0000 11 66 0 0 3 000 5 2222222 4 33333 999 4 66 4 0000000000 0000 66 44 11 88 5555555555 5 5 5 5 444 666666 0 5 2 000 00000 0 666666 88 1 2 4 6 000 2 88888888888888888 6 6 0 6 66 5 0 6 6 6 6 6 6 6 0 6 6 6 1111111 44444444 1 55 99 00 0 0 0 0 8 8 11 8 0 8 8 8 3 8 22 0 2 2 1111 0 8 44 3 6 999 5 6 8 0 0 3 55555 3 7 5 0 0 6 1 6 99 1 6 5 5 999 77 5 5 1 77 5 5 77 888 77 1 5 0 77 5 5 1 5 999 000 5 0 6 111 111 6 6 5 0 0 0 5 5 555 11 5 3 5 5 6 8 3 6 6 6 4444 6 5 6 888 99 6 4 4 55 3 3
lowQualScore : . . .. . . . . . . . .... . .. . . . .. . ..... .. . . . .. . . . . . . . .... .... . ...... .. . . . . .. .. . .. . . ... . . ... . ... . . . .. . .. . ................... .... .. . .... ... .. . ... . . . . . . .... .. .. . . . ... . ....... . ..... ... . .. . .......... .... .. .. .. .. .......... . . . . ... ...... . . . ... ..... . ...... .. . . . . ... . ................. . . . . .. . . . . . . . . . . . . . ....... ........ . .. .. .. . . . . . . .. . . . . . . . .. . . . .... . . .. . . ... . . . . . . ..... . . . . . . . . .. . . . . ... .. . . . .. . . .. ... .. . . . .. . . . . ... ... . . . ... ... . . . . . . . . ... .. . . . . . . . . . . .... . . . ... .. . . . .. . .
lowQualScore : 7 0 88 0 2 4 0 6 0 0 0000 8 22 0 0 7 22 7 55555 22 7 7 7 22 7 7 7 5 7 2 0 2222 2222 0 222222 22 7 7 7 5 22 99 7 11 7 7 444 4 1 999 9 777 7 7 7 77 7 44 7 5555555555555555555 9999 99 0 6666 888 99 0 555 4 0 0 0 0 2 6666 99 99 2 0 1 000 0 7777777 4 66666 999 4 11 4 7777777777 1111 99 66 99 44 0000000000 7 7 7 7 444 333333 7 7 3 000 33333 1 444444 33 0 5 2 7 222 5 55555555555555555 7 7 2 7 88 2 8 7 7 7 7 7 7 7 2 7 7 7 7777777 22222222 0 55 66 22 0 0 0 0 0 0 66 0 8 0 0 0 2 0 55 0 5 5 2222 0 0 44 8 7 444 7 7 0 2 0 2 00000 2 0 5 0 0 7 0 7 22 0 7 7 7 999 99 7 7 9 99 7 7 99 333 99 9 7 7 99 0 0 4 7 444 000 7 1 7 777 777 7 7 0 1 4 4 0 0 111 99 7 0 7 7 7 0 7 7 7 7 2222 7 7 7 222 22 7 4 4 00 6 6
consensus : GAAGTCGAAGCA-GCAATCAA--AGCAC-TGAAGAAAGGGAAGTCAGCAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGC-AG----GGGGAGAGGCCATGATCAACGCCCTGACNACCATCT-GCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--GC-TCCC-CAAGA-AAGGC-AACCTACAGCTG----TGCCAGAA----TTACCGC------AC--CATCA-GCCTAATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATCGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AAGATC--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---CTTCAA--CCTC-AG-G-ATACTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACC----TCT--ACC--ACGTC-TTCGC--G-GA----C--TTTAA-AA-GGG-CCTTCG-A-C-AG--GG-TCT--G-CAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-GTAT----------AACATCAACGCCA-ATC-T-GATCAA-CGCC--ATACA---T--ACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGNAGCATAGGGGACTGG-TTCGG--GACAACGGTC--------G-GGTCG--A-GACAA-GGCTGTTTGCTT-T-CTCCAACTCT-CTTCAA-CATC-TTTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGAGCACAATG-GAACAGTC-AGC-A-------TTGGAGGCAG--------GACAATCACAA-NCTTGCGTTTTGCCGACGACATTGACG-GACTAG-CA-G-GGGAAGAA-CAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CACCGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANTT-GGAGAGA-AGG-AT-A-CAGG--C-AA-CTGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAAACTG-AAGTGGTATGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGA-AAGAC-GCTGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
Reference ( family-389 ) : GAAGTCGAAGCA-GCAATCAA--AGCAC-TGAAGAAAGGGAAGTCAGCAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGC-AG----GGGGAGAGGCCATGATCAACGCCCTGACNACCATCT-GCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--GC-TCCC-CAAGA-AAGGC-AACCTACAGCTG----TGCCAGAA----TTACCGC------AC--CATCA-GCCTAATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATCGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AAGATC--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---CTTCAA--CCTC-AG-A-ATACTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACC----TCT--ACC--ACGTC-TTCGC--G-GA----C--TTTAA-AA-GGG-CCTTCG-A-C-AG--GG-TCT--G-CAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-GTAT----------AACATCAACGCCA-ATC-T-GATCAA-CGCC--ATACA---T--ACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGNAGCATAGGGGACTGG-TTCGG--GACAACGGTC--------G-GGTCG--A-GACAA-GGCTGTTTGCTT-T-CTCCAACTCT-CTTCAA-CATC-TTTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGAGCACAATG-GAACAGTC-AGC-A-------TTGGAGGCAG--------GACAATCACAA-NCTTGCGTTTTGCCGACGACATTGACG-GACTAG-CA-G-GGGAAGAA-CAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CACCGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANTT-GGAGAGA-AGG-AT-A-CAGG--C-AA-CTGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAAACTG-AAGTGGTATGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGA-AAGAC-GCTGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|1 : GAATTCGAAGCA-GCAATTAA--AACAA-TGAAGAAGAGAAAATAAGCAGAAGTGGATAAC-ATCCCCGGAGAATTAGTA-CAAGC-TT----GGGAAG---------TT----CTCTGACTATCATTT-GCAAC--AAGATCT-GGCAGAAAAGAGAA--TGGCTGACACCATGGACACAA-TCAA-TGGTGATT-AC--AT-TCCC-CAAGA-AAGGC-AACCAACAACTA----TGTCAGAA----TTATCGC------AC--CATCA-TTCTAATAAG-TAAACC-GGTAAGGTCATGTTA--AA-GATAGTACT-GAACAGTCTG-AAACCAC-A-AGCAGGG-GAGATA--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-TAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---GTTTAA--CCTCGAG-A-GTATTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACT----TCT--ACC--ACATC-TTTGC--G-GA----T--TTTAA-AA-GGG-CCTTTG-A-C-AG--GG-TCT--GATAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-ATAC----------AACACCA-TGTCA-ATC-T-GATCAA-CGTT--ATACA---TGTACAACAACTATATGA-CAGGACCT---CCAATG---C-AGTCTA------CCTCAA-CGGCAGCATGGGGGACTGG-TTCAG--GACAACGGTT--------A-GATTG--A-GGCAA-GGTTGTTTGATC-T-CTCCCACTCT-CTTCAA-CTTC-TTCTTAG-AAA-GAATCATAACTGGA-G-CACTGGAAGACCACATTG-GAACAGTC-AGT-A-------TTGGAGGCAG--------GGCAATCACAA-ACTTGTGTTTTGCCGATGACATTGACG-GACTAG-CA-G-GAGAAAAA-CAGGAA-CTC-GCCA---TTATTGGAACGGCTGGAAACAACC-TCAG-CGGCT-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGTTTGATGACC-AACAG-TACCGATGGCATCAACGCATGCAGACATCAAAGA-AAGTGGCGAGAAA-CTCG-AGACCGTCAACATCTTCAAATATCTTGGATCAGTTATCTCAGA-TG-A-AGGATCAAGATC-AGAAATTCTCTACAGAA-TCGCGCAAACAA-CAGCTGCGCT-GACAAAACTGAGG-----CCTATTTGGAATGTCAGAAACATCACATTCAGCTCAAGG-TCAGACT-GAT-GCCCTCACTGGTCACCTCAATATTTTTGTATGCC-TGTGAGTCGTGGAAACTGACA-GCAG--AAAT-GGAGAGA-AGG-AT-T-CAGG--T-AA-CTGAAAT--GA-GATGCTA-CCG--CAGA--CTC--CTTGGCA-TCTCATACAAAGACCA-CA-CCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ATGTA-GATCTTCTGATTACAGGG-AAGA-GAC-G-AAAATTA-AAGCGGCATGGTC-ATGTCACAAGATCC-ATGGG-ACTTGCCAAAACAATCCT-ACAAGGAACTGTACAAGGAAAGAGAAAGAGAGGAAGAC-AGGGAATTGAG-AT----G-AAGGACAGCATCACAGAG-TGGACAAGA-AAAGC-GATGAGT--GACAAT-CTAAAGAGGGAGGAGGACAGAGAGAAATGGCGAC-AGCTGGTT-ACC-AGAT--GCAG--TGA-T-GTCCCCACGG
gi|10 : GGC-AG----GGGAGAAGGCC--GAGCAACGCCCTGACAACCATCTTGCAACCAAAGATCTTGGCGGACAGG----G-TGGCC-ACA--ATGGACACA--TCAC-TGG-GATTCAT--GC-TCCC--AAGA-AAG-C-A-CCTACAGCTG----TGCCAGAA----TTACCGC------ACACTATTA-GCCTATTA-G-T-ACCCC--TAAAGTCATGTTG--AAAGATCCTGTT-AAACAGACTGAAAACCAC---GGCAGAGAAAGAT---AGCGGTG---AA-GA-AC-A--GCAG-GTTT-CAGAGCA-GG---------CCGCC-----AG--T-ACAA--CAAGAACA-----AT---CTTCAA--CCTC-AG-A-ATACTGTTGCGAAG-GGTAC-CTCCA-ACAACAACAAGAAA----TCT--ACC--ATGTCTTTTGT--G-GA----C--TTTAA-GA-AGG-CCTTCG-ACC-AG--AG-TCT--G-
gi|11 : -C-----AG--C-ACTA--C-AGAACA----GAT---CTTCAA--CCTC-AG-G-GTATTT-TGTGAGA-GATAT-CTCCA-TTACCAGCAAGACC----TCA--ACC--AC--C-T--------------C--TTTA------------------C-AG--G----------AC--TCAA------AAGGGC--A--CA----AGGCT-GTAT----------AACTGCAATGTCA-ACC-T-GATTAA-CGTCTTATACAGTGT--A-AACA--TATATTA-TAAGACCA---CAAGTG---T-AGTGCA------CATCAG-CAGAATCACGGGAGACTGA-TTTAG--AAGTACAGCC--------GTAGTAA--AAGAGAA-G-TTGTCTACTCGT-ATCCATC-CT-CTTCAA-CGTA-TTTCTGG-TAG-GAAAAATAGCTGAA-G-CACTTCAATGTCATAAAG-GGACAGTC-AGA-A-------TTGGAGGAAA--------GATAATCGCAA-gcat
gi|12 : aA-TG-ACAAGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAACCCCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-CGTGAGTCATGGACACTGACA-GCAG--ATTT-GGAGAGA-AGA-AT-A-CAGG--C-AA-GAGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-TAACACAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAT-G-
gi|13 : -TGTGAGACATGGATATTAAT--GCCG--AGAC-AGAGAGA-AAG-AT-ATCAGT--C-A--CGGAGAT--TA-GAAGTTA-CAGACCA----CTA--CTCGGCA-TCTCACGCAAAG---A-CA-TCAC--CT-GC---GAGGAAATGTT-AAGCAGATTTTAAAATGTTAT---TGGA--CCCTACGACAAA-G---TCTTGTCCAATGTT-AAGATTAT-A-CATCTTG-AAGTTGTATAGGC-TGGTCTCAAGATCC-TTAGG-GCTTGCCAAGACAGTCCg
gi|14 : ttAAGAG-CTCAGCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CA-CGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTT-AAGTACCTTGGGTCAGTCGTATCAGA-TGAA-AGGATCAAAGCC-TGAAATTTTCTCCAGGA-TCGCGCAAACAA--AGCCGCcccacgag
gi|15 : TACAAGGAGGGAGAAAGAGAGGCAGGC-AGATAA-AGAG-AT----G-GGAGACAACATCACAGAA-TGGACCGGA-AAGAC-ACTGGGC--GACAAC-TTAAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|16 : AAA-GCTCTTT--ACCAC-----------------AAACTG-AAGTGGTATGGAC-ATGTCACAA-ATCCTTCAGG-ACTCACCAAGATAGTCCT-ACAGGGTACAATGAAAGGAGGGAGAAGAAAAGTCAGAC-A---AA-AGAA-ACGCTGG-GAAGACAATATCCGGGAG-Ttcgtcccgaccaagggataggtg
gi|17 : ggattacgaAACAACACAGAG-TGGACCGGA-AAGAC-A-TGAGC--GACAAC-TTGAGGAGGACAGAGAA-AGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtgtctgagtgacact
gi|18 : GAAAGCAGAGAACAGAAAGGGGTGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtcgtcccgaccaaggatagg
gi|19 : aGA-AGG-AT-T-CAGG--C-AA-CAGAGAT--GA-AATGCTG-CCG--CAGA--CTC--CTTTGCA-TCTCATACAAAGACCG-CA-TCATAtcgtcccgaccaagggataggatag
gi|2 : GAAGTTGAAGCACGCAATCAATTAGCACATGATTAAAGGGAATTCA-CAGGAGTGGATAACTATACCAGGAGAGCTAGTGGCATGCTAGTGCAGGGGAGAGGCCATGATCAACGCCCTGACAACCATCT-CCAAC--AAGATCT--GCAGACAGGAAGAGTTGGCCAACACCATGGACACAATTCACTTGGTGATC-ACCAGCATCCC-CAAGA-AAGGCAAACCTACAGCTGTTTTTGCCAAGAGATCTTACCCCGTGTCGAC--TATTAGGTCCAATAAGTTCACCCCAGTAAAGTCATGTTG--AA-GATCCTGCT-GAACAGACTA-AAACCAC-AGGGCAGAGAAAGATC---TTGCGGAAAAA-GA-AC-A-AGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AGTAC-ACAA--C-AGAACA----GAT---CTTCAA--CCTT-CG-A-AT-CTGTTGCGAGAGGGTAC-CTCCA-ACACCAACAGAACCCGCATCT--ACC--ATGTCATTTGTGGG-GA----C--TTTAA-GACAGG-CCTTCGAA-C-AG--AGCTCTGGG-CATG-GCAGCT-TT-ATGGGC--AACCAT-TGAGGAT-G-AT----------AACATCAACGCCAGATCTT-GATCAA-CAC------CA---T--ACAACAACTATATGAGCAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGAAGCATAGGGGACTGGCTTCGG--GACAACGGCC--------G-GGGTGTCA-GACAAGGGCTGTTTGCTT-TCCTCCAACTCTCCTTCAA-CATC-TTCTTGGAAAA-GAATCATGACTGGACGCCACTAGAAGAGCACAATGTAAACAGTCAAGC-A-------TTGGAGGCAGCAACACCTAACAATTACCATCCTTGCGTTTTGCCGACGACATTGATGCCACTAATCAGG-GGGAAGAA-CAAGAGCCTC-GCC-AACTTGT-AGAACGATTGGAC---ACC-TCAG-CAGCGTTACGGCATGGAGATCAGTG-CGAGAAAACCAAGCT-GATGACCAAACAACCACCGAC-GCATCAACACA----GACATCAAAGTCCAGTGGCGAGAAA-CTTGAAAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG---AGGATCAAAGCCTTGAAATTCTCTCC
gi|20 : ggaagaagaagaggaaccagaagggtgcaaaaccgtatagggcagttcagccaggaaaatcaaaagagtcaatgaaaggcaaaaagaaaattggattgagagaagtgcctcaagaaatagaaggacaactgtaatgaaaataacagcaaaaaggagcataccaccatagtgaaagaacctagcgttgtccatcgaaacagggcgcaccaaccacctacaggacaaagaagggaagtgcctgacgaggaacagggacattttgaaaacgatggacagagtactgcttcagaactgtacaaccacaaagccacaggaaaaacccagaaagctactgaacgtccctccagacataccaacatcgatgaccactcccatccttcgagaGGAGAG-AACTGGTTTGCCAAGATCAACAGTTTGG-TGGCCCCAACGG
gi|21 : ATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCC-ACGGtcgttcctgaccaaggataggatag
gi|22 : A-GATCTTTTGACCACTGTG-AAGA-GAC-G-GAAATTG-AAGTGGTATGGGC-ATGTCACAAGATCC-tcgtcctcaccaagggataggatag
gi|23 : TACAA-GATTAACA-TCATAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAA
gi|24 : ACAG--TGG-T-GCCCCAACGG
gi|26 : CAACAG--TGG-T-GCCCCAACGGtcgtcccgaccacgggataggtgatag
gi|27 : G-A-AGGATCAAAGCC-TGAAATTCTCTCCAAGT-TCGCtcgtcccgaccaagggataggat
gi|29 : AAGGGAAGTCAGCAGGAGTGGATAAT-ATAC
gi|3 : GAAGCA-GCAGTCAA--AGCAC-TGAAGAAGGGGAAATCAG---GAGTAAATAAC-ATCCCAAGAGAATTAGTA-CAGGC-AG----GGGGAGAGGCCATGATAAGCGCTCTGACTATCATCT-GCAAC--AAGATCT-GACAGACCAGAGAA--TGACCGACACCATGGACACAA-TCAC-TGGTGATT-AC--AC-TCCC-CAAGA-AA--------------TA----TGTCAGAA----T-ACCAC------AC--CATCA-GCCTGATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATAGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AGGATC--ATTGCTG---AA-GA-GC-A-GTTAA-GTTT------------------------T-----AG--C-ACAA--C-AGAACA----AAT---CATCAA--CCTC-AG-G-ATACTG-TGCGAGA-GGTAC-CTCCA-ACTCCAGCAAAACC----TCT--ACC--ACGTC-ATCGC--G-GA----T--TTTAA-AA-AAGCCCTTTA-A-T-AG--GG-TT---------------------TGGGC--GA-AA--TGAGGAC-ATAA----------AACATCAACGCCA-ACC-T-GATCAA-CGT------CA---T--ACAACAACTATATGA-CTGGGCCT---CCAGCG---C-AGTCTA------CCTCAA-TGACAGCATAGGGGACTTG-TTCAG--GACAACGGTCNNNNNNNNN-NNNNN--N-NNNNN-NNNNNNNNNNNN-N-NNNNNNNNNN-NNNNNN-NNNN-NNNNNNN-NNN-NNNNNNNNNNNNNN-N-NNNNNNNNNNNNNNNNNG-GAACAGTC-AGT-A-------TTGGAGGCAG--------GACAATCACAA-ATTTGCTTTTTGTCGAT----TTGTCA-GACTAG-CA-G-GAGAAGAA-CAGAAA-CTC-GCAAAATTAGT-GGAACAACTGGACACAAT-----------------------AGATCAGTGTCGAGAAAACCAAGAT-GATGAC
gi|4 : aaaaaagaaagaaccagatggtgcaaaagagtacagagcagtctgcaagaaatctaaaaaggtttgaaaagggcaccaaaaaattggattgagaaacaatgccaaggaattgaagacgaacagcagcaaaaaggcataccaactaacgaaggacttgacatgcactaaacaagggcacaccgccaccatcattcaggataaacaaggaaaatgtctgacagaggaacaagacattttgaaacgatggacagaatactgctcaaacaataaagccacaggaaaccctggggtactaaacgtaccccagcaacgaacatcgatgaccaccgaatcattcaa--TTTAA-AA-GA--CTTTCG-A-C-AG--AG-TCT--G-CAT--GCAGCT-T--ATG--C--AACCA--TGAGGAT-GTAT----------AACATCAACGCCA-ATC-TTGATCAAGCACC--ATACA---------ACAACTATATTA-CA--GCCT---CCAGCG---CCAGTT-A------CCTCA--CGACA-CATAGGG-ACTGG-TTCGG---ACAACGGTC--------G-GGTC---A-GACAA-GGCTGTTTGCTT-T-ATCCAACTCT-CTTCAA-CATC-TCTTGGG-AAA-GAATCATGACTGAC-G-CACTAGAAGAGCACAATG-GAACAATC-AGC-A-------TTGGAGGCAG--------AA-GATTACAA--CTTGCGTTTTGCCGACAGCATTGACG-AGCTAG-CA-GTGGGAAGAAACAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACCCTCAAACAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGAC--AACAA-CACCGACGGCATCAACACA----GACATCCAAGT-CAGTGGCGAGAAAACTTG--AAC-GTACATAGCTTCAAGTACCTTGGGTCAGTCGTATCAGAATG-A-AGCATCAAAGCC-TGAAATTCTCTCCAGGAATCGCGCAAACAAACAGCCGCTCTCGACAAA-CTGAGG-----CC-GTTTGGATTGACAGAAA-ATCACGCTCAGATCAAAGATCAGACTTGATAGCGATCACTGGTCATCTCCATATTCCTGTACGCCATGTGAGTCATG-ACA---ACA-GCA---ATTT-GGAGAGA-AGA-ATCA-CAGG--C-AAACTGAAAT--GA--ATAC-A-CCG---AGG--CTC----AGGCA-TCTCCTACAAAA--CA-CA-TC-CAA-T-GT-TTGAGG---TACG-GA---GAGTCACAAAC--CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAA--CG-AAGTGGTATGG-C-ATGTCACAAGATCC-ACAG--ACTTGCCAACACAATCCTGACAGAAACCTGTACAAGA--GGAGAAGGAAAGGCAG-C-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGACAAGAT-A-TGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAAAG-AACTGGTT-GCCAA-ATCAACAG--TGGCT-G-CCCAACGG
gi|5 : CGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGAACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCACAAAAAA-CAGCCGCCCT-GACAAAACTGAAATGAAACCTGTTTGGAATGATAGAAATATCACGCTCAGATCAAAG--CAGACT-GAT-GCGATCACTGTTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ATTTTGGAGAGA-AGA-AT-A-TAGG--C-AA-CTGAATT--GA-GATGCTA-CCA--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GT-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG---CAT-C-ACAAA-GATCTTTTGACCACTGTT-AAGA-GACGG-AAAACTG-AAGTGGT-TGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGAAACTGTATAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAGAAG----G-GAGGACAACATCACAGGG-TGGACCGGA-ATGAC-ACTGAGC--GACAACTTTGAGGAGGACAGAGAACAGAAAGGAATGGAGAG-AGCTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtcgtcccgaccaagggataggata
gi|6 : GAAGTTGAAGCA-GCAATCAA--AGCAC-TGAAAAAAGGGAAGTCAGCAGGAGTGGATAAT-ATACCAGGAGAGCTAGTG-CAGAC-AG----GGGGAGAGGCCATGATCAACGCCCTGACAACCATCT-GCAAC--AATATCC-GGCAGACAGGAGAGG-TGGC--AAACCAT-GACACAA-TCAC-TGGTGATC-AC--GC-TCCCACAAGAGAAGGC-AACATACAGCTG----TGCC-GAA----TTACCGC------AC--TATTA-G-CTAATAAG-TCACCCAAGTAAAGTCATGTTGGAAA-GATC-TGCT-GAACAGACTG-AAAC--C-A-GGCAGAG-AAG-TC--ATTGC-G---AATGA-ACAA-AGCAGAGTTT-CAGAGCAGGG---------GCG-C-----AG--T-ACAAC-C-AGAACA----GAT---CTTCAACTCCTC-CA-G-ATTCTG-TGCGAGA-GGTAC-CTCCA-ACACCAAC-AAACC----TATCAGCC--ATGTC-TTTGT--GAGATCGTC--TTGAAGAA-GTG-CCTTCG-ACC-AG--AG-TCTG-G-CATAGGCAGCT-TTCATGGGCATAACCATTTGAGGAT-GTAT----------AACATCAACGCCA-ATC-C-GATCAA-CACC--ATACA------ACAACTATAATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCtcaccaagggataggatag
gi|7 : actgaacgtccctccagcaaccaacatcgatgaccatcccatccttcgagaaTGTTG--AA-GATC-TGCTTGAACAAGCTG-AAACCACCA-GGCAGAG-AATGTCTAATTGCGGC--AA-GATAC-ATAGCAG-GTTTTCAGAGCA-TGTGTACTGCAGTG-CCAAGAAG--TTACAAGAC-AGCACACAAAGATAACCTTCAA--CCT--AGTATATACTG-TGCGAGA-GGTACTCGCTAGACACCA-CACAGTC----TCTG-ACCCTATGTC-TTTGT--G-GA----CAATGTAG-AA-GG--TCTTCG-A-CCAGTTGG-CC------AT--GCAGCTCTT-ATGGGC--A-CCA--TTAGGAGAGTATGCTGACTAGTAACATCAACGCCA-ATC-T-GATCAA-CACC--ATA--------ACAACAACTAT-TGA-CAAGGCCTATTCCAGCGGCAT-AGTTTGAACCACCCTCAATCGGATGCAT--GGGACTGG-TTCGGCGGA-AACGGTC--------G-GGTCC--A-GACAA-GGCTGTATGCTT-T-CTCCA-CTCT-CTTCAAACATTATCTTTGG-AAAAGATTCATGACTTGA-G-CACTAGAAGGGCACAATG-GAACAGTC-AGCTATTTAATCTTAGAGGCCA--------GACAATTACCA-CTTTGCGCTTGCCCTA-GACAT
gi|8 : C-TGTGAGTCATGGACACTGACACGCAGTCAATT-GGAGAGATAGATAT-A-CAAGGTCGAA-CTGAAATATGATGATGCTAACCG--CAGAGTCTCGGCTAGGCAATCTCCT-TAAAATGCA-CAATCACAAATTGCAT-GAGG---TACGCGAACAGAATCCAAAACG-CAAGATTGGGTTGCCT-C-ACAAAAGATCTTTAGACCA-TGTGGAAGA-GAC-GGAAAACTGCAAGTGGTATGGGCCATGTCACAAGATCC-ACAGGGACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGG-AGAAGGAGAGGCAGGCCAGAGAA-AGAG-AT----GAGAGGACGACATCACAGAGGTGGACCGGA-AAGACAGCTGAGCCCGACAAC-TTGAGGAGGACAGAGAACAGAAAGGGAT-GAGAGAAACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|9 : ATAAGCGCTTTGACTATCATCT-ACAAC--AAGATCT-GACA--CAGGA-AAG-TAGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--AC-TCCC-CAAGA-AAGGC-AACCTACACTTT----TGTCAGAA----TTACCCC------AC--CATCG-GCCTAATAAA-TCACCCCAGTAAGGTTATGTTG--AA-AATAGTGCT-AAACAGGCTG-AAACCAC-A-GGCAGAG-AAGAGT--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-TAGAGCA-GG---------GTA-C-----AG--C-ACAA--C-AAAACA----GAT---CTTCAA--ACTC-AT-G-ATACTG-TGTGAGT-GGTTT-CTCCA-ACACCAGCAAAGCC----TAT--ACC--ACATA-TTCGT--G-GA----T--TTTAA-AA-AAG-CCTTTG-T-C-AG--GG-TCTG-G-CAC--AAAGCT-TT-ACAGGC--AATTA--TGAtcgtctcgtcccgaccaagggataggatag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): GAACAGGACATTTTGAAGCGATGGACAGAGTACTGCTCAGAACT
Unaligned ( gi|28 ): TGCCCCAACGGTCGTCCCGACCAAGGGATAGGTGA
Alignments
lowQualScore : 1 11 1 1 1111 11111 1111 1111 111111 11 1 111 111 2222222222222222222 11 1111 1 1111 11 1 111 1111111 11111 3333333333 1111 11 2222222222 111 222222 111 11111 111111 111 22222222222222222 2222222 22222222 11 11 1 1 1 1 11 1 2222 1 11 1 22222 1 1 1 111 111 111 1111 111
lowQualScore : 0 0 33 0 0 1 8 0 0 8 7777 0 66 1 1 6 99 6 33333 66 6 6 6 99 6 6 6 2 6 3 1 4444 4444 1 999999 99 6 3 6 2 44 77 5 22 5 5 999 1 0 000 4 555 5 5 5 99 5 77 5 3333333333333333333 7777 11 5 0000 888 66 5 777 0 5 5 5 2 0000 11 66 0 0 3 000 5 2222222 4 33333 999 4 66 4 0000000000 0000 66 44 11 88 5555555555 5 5 5 5 444 666666 0 5 2 000 00000 0 666666 88 1 2 4 6 000 2 88888888888888888 6 6 0 6 66 5 0 6 6 6 6 6 6 6 0 6 6 6 1111111 44444444 1 55 99 00 0 0 0 0 8 8 11 8 0 8 8 8 3 8 22 0 2 2 1111 0 8 44 3 6 999 5 6 8 0 0 3 55555 3 7 5 0 0 6 1 6 99 1 6 5 5 999 77 5 5 1 77 5 5 77 888 77 1 5 0 77 5 5 1 5 999 000 5 0 6 111 111 6 6 5 0 0 0 5 5 555 11 5 3 5 5 6 8 3 6 6 6 4444 6 5 6 888 99 6 4 4 55 3 3
lowQualScore : . . .. . . . . . . . .... . .. . . . .. . ..... .. . . . .. . . . . . . . .... .... . ...... .. . . . . .. .. . .. . . ... . . ... . ... . . . .. . .. . ................... .... .. . .... ... .. . ... . . . . . .... .. .. . . . ... . ....... . ..... ... . .. . .......... .... .. .. .. .. .......... . . . . ... ...... . . . ... ..... . ...... .. . . . . ... . ................. . . . . .. . . . . . . . . . . . . . ....... ........ . .. .. .. . . . . . . .. . . . . . . . .. . . . .... . . .. . . ... . . . . . . ..... . . . . . . . . .. . . . . ... .. . . . .. . . .. ... .. . . . .. . . . . ... ... . . . ... ... . . . . . . . . ... .. . . . . . . . . . . .... . . . ... .. . . . .. . .
lowQualScore : 7 0 88 0 2 4 0 6 0 0 0000 8 22 0 0 7 22 7 55555 22 7 7 7 22 7 7 7 5 7 2 0 2222 2222 0 222222 22 7 7 7 5 22 99 7 11 7 7 444 4 1 999 9 777 7 7 7 77 7 44 7 5555555555555555555 9999 99 0 6666 888 99 0 222 0 0 0 0 2 6666 99 99 2 0 1 000 0 7777777 4 66666 999 4 11 4 7777777777 1111 99 66 99 44 0000000000 7 7 7 7 444 333333 7 7 3 000 33333 1 444444 33 0 5 2 7 222 5 55555555555555555 7 7 2 7 88 2 8 7 7 7 7 7 7 7 2 7 7 7 7777777 22222222 0 55 66 22 0 0 0 0 0 0 66 0 8 0 0 0 2 0 55 0 5 5 2222 0 0 44 8 7 444 7 7 0 2 0 2 00000 2 0 5 0 0 7 0 7 22 0 7 7 7 999 99 7 7 9 99 7 7 99 333 99 9 7 7 99 0 0 4 7 444 000 7 1 7 777 777 7 7 0 1 4 4 0 0 111 99 7 0 7 7 7 0 7 7 7 7 2222 7 7 7 222 22 7 4 4 00 6 6
consensus : GAAGTCGAAGCA-GCAATCAA--AGCAC-TGAAGAAAGGGAAGTCAGCAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGC-AG----GGGGAGAGGCCATGATCAACGCCCTGACNACCATCT-GCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--GC-TCCC-CAAGA-AAGGC-AACCTACAGCTG----TGCCAGAA----TTACCGC------AC--CATCA-GCCTAATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATCGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AAGATC--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---CTTCAA--CCTCAGGA-TA--CTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACC----TCT--ACC--ACGTC-TTCGC--G-GA----C--TTTAA-AA-GGG-CCTTCG-A-C-AG--GG-TCT--G-CAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-GTAT----------AACATCAACGCCA-ATC-T-GATCAA-CGCC--ATACA---T--ACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGNAGCATAGGGGACTGG-TTCGG--GACAACGGTC--------G-GGTCG--A-GACAA-GGCTGTTTGCTT-T-CTCCAACTCT-CTTCAA-CATC-TTTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGAGCACAATG-GAACAGTC-AGC-A-------TTGGAGGCAG--------GACAATCACAA-NCTTGCGTTTTGCCGACGACATTGACG-GACTAG-CA-G-GGGAAGAA-CAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CACCGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANTT-GGAGAGA-AGG-AT-A-CAGG--C-AA-CTGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAAACTG-AAGTGGTATGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGA-AAGAC-GCTGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
Reference ( family-389 ) : GAAGTCGAAGCA-GCAATCAA--AGCAC-TGAAGAAAGGGAAGTCAGCAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGC-AG----GGGGAGAGGCCATGATCAACGCCCTGACNACCATCT-GCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--GC-TCCC-CAAGA-AAGGC-AACCTACAGCTG----TGCCAGAA----TTACCGC------AC--CATCA-GCCTAATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATCGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AAGATC--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---CTTCAA--CCTCAGGA-TA--CTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACC----TCT--ACC--ACGTC-TTCGC--G-GA----C--TTTAA-AA-GGG-CCTTCG-A-C-AG--GG-TCT--G-CAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-GTAT----------AACATCAACGCCA-ATC-T-GATCAA-CGCC--ATACA---T--ACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGNAGCATAGGGGACTGG-TTCGG--GACAACGGTC--------G-GGTCG--A-GACAA-GGCTGTTTGCTT-T-CTCCAACTCT-CTTCAA-CATC-TTTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGAGCACAATG-GAACAGTC-AGC-A-------TTGGAGGCAG--------GACAATCACAA-NCTTGCGTTTTGCCGACGACATTGACG-GACTAG-CA-G-GGGAAGAA-CAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CACCGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANTT-GGAGAGA-AGG-AT-A-CAGG--C-AA-CTGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAAACTG-AAGTGGTATGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGA-AAGAC-GCTGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|1 : GAATTCGAAGCA-GCAATTAA--AACAA-TGAAGAAGAGAAAATAAGCAGAAGTGGATAAC-ATCCCCGGAGAATTAGTA-CAAGC-TT----GGGAAG---------TT----CTCTGACTATCATTT-GCAAC--AAGATCT-GGCAGAAAAGAGAA--TGGCTGACACCATGGACACAA-TCAA-TGGTGATT-AC--AT-TCCC-CAAGA-AAGGC-AACCAACAACTA----TGTCAGAA----TTATCGC------AC--CATCA-TTCTAATAAG-TAAACC-GGTAAGGTCATGTTA--AA-GATAGTACT-GAACAGTCTG-AAACCAC-A-AGCAGGG-GAGATA--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-TAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---GTTTAA--CCTCGAGAGTA--TTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACT----TCT--ACC--ACATC-TTTGC--G-GA----T--TTTAA-AA-GGG-CCTTTG-A-C-AG--GG-TCT--GATAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-ATAC----------AACACCA-TGTCA-ATC-T-GATCAA-CGTT--ATACA---TGTACAACAACTATATGA-CAGGACCT---CCAATG---C-AGTCTA------CCTCAA-CGGCAGCATGGGGGACTGG-TTCAG--GACAACGGTT--------A-GATTG--A-GGCAA-GGTTGTTTGATC-T-CTCCCACTCT-CTTCAA-CTTC-TTCTTAG-AAA-GAATCATAACTGGA-G-CACTGGAAGACCACATTG-GAACAGTC-AGT-A-------TTGGAGGCAG--------GGCAATCACAA-ACTTGTGTTTTGCCGATGACATTGACG-GACTAG-CA-G-GAGAAAAA-CAGGAA-CTC-GCCA---TTATTGGAACGGCTGGAAACAACC-TCAG-CGGCT-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGTTTGATGACC-AACAG-TACCGATGGCATCAACGCATGCAGACATCAAAGA-AAGTGGCGAGAAA-CTCG-AGACCGTCAACATCTTCAAATATCTTGGATCAGTTATCTCAGA-TG-A-AGGATCAAGATC-AGAAATTCTCTACAGAA-TCGCGCAAACAA-CAGCTGCGCT-GACAAAACTGAGG-----CCTATTTGGAATGTCAGAAACATCACATTCAGCTCAAGG-TCAGACT-GAT-GCCCTCACTGGTCACCTCAATATTTTTGTATGCC-TGTGAGTCGTGGAAACTGACA-GCAG--AAAT-GGAGAGA-AGG-AT-T-CAGG--T-AA-CTGAAAT--GA-GATGCTA-CCG--CAGA--CTC--CTTGGCA-TCTCATACAAAGACCA-CA-CCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ATGTA-GATCTTCTGATTACAGGG-AAGA-GAC-G-AAAATTA-AAGCGGCATGGTC-ATGTCACAAGATCC-ATGGG-ACTTGCCAAAACAATCCT-ACAAGGAACTGTACAAGGAAAGAGAAAGAGAGGAAGAC-AGGGAATTGAG-AT----G-AAGGACAGCATCACAGAG-TGGACAAGA-AAAGC-GATGAGT--GACAAT-CTAAAGAGGGAGGAGGACAGAGAGAAATGGCGAC-AGCTGGTT-ACC-AGAT--GCAG--TGA-T-GTCCCCACGG
gi|10 : GGC-AG----GGGAGAAGGCC--GAGCAACGCCCTGACAACCATCTTGCAACCAAAGATCTTGGCGGACAGG----G-TGGCC-ACA--ATGGACACA--TCAC-TGG-GATTCAT--GC-TCCC--AAGA-AAG-C-A-CCTACAGCTG----TGCCAGAA----TTACCGC------ACACTATTA-GCCTATTA-G-T-ACCCC--TAAAGTCATGTTG--AAAGATCCTGTT-AAACAGACTGAAAACCAC---GGCAGAGAAAGAT---AGCGGTG---AA-GA-AC-A--GCAG-GTTT-CAGAGCA-GG---------CCGCC-----AG--T-ACAA--CAAGAACA-----AT---CTTCAA--CCTCAGAA-TA--CTGTTGCGAAG-GGTAC-CTCCA-ACAACAACAAGAAA----TCT--ACC--ATGTCTTTTGT--G-GA----C--TTTAA-GA-AGG-CCTTCG-ACC-AG--AG-TCT--G-
gi|11 : -C-----AG--C-ACTA--C-AGAACA----GAT---CTTCAA--CCTCAGGG-TA--TTT-TGTGAGA-GATAT-CTCCA-TTACCAGCAAGACC----TCA--ACC--AC--C-T--------------C--TTTA------------------C-AG--G----------AC--TCAA------AAGGGC--A--CA----AGGCT-GTAT----------AACTGCAATGTCA-ACC-T-GATTAA-CGTCTTATACAGTGT--A-AACA--TATATTA-TAAGACCA---CAAGTG---T-AGTGCA------CATCAG-CAGAATCACGGGAGACTGA-TTTAG--AAGTACAGCC--------GTAGTAA--AAGAGAA-G-TTGTCTACTCGT-ATCCATC-CT-CTTCAA-CGTA-TTTCTGG-TAG-GAAAAATAGCTGAA-G-CACTTCAATGTCATAAAG-GGACAGTC-AGA-A-------TTGGAGGAAA--------GATAATCGCAA-gcat
gi|12 : aA-TG-ACAAGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAACCCCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-CGTGAGTCATGGACACTGACA-GCAG--ATTT-GGAGAGA-AGA-AT-A-CAGG--C-AA-GAGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-TAACACAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAT-G-
gi|13 : -TGTGAGACATGGATATTAAT--GCCG--AGAC-AGAGAGA-AAG-AT-ATCAGT--C-A--CGGAGAT--TA-GAAGTTA-CAGACCA----CTA--CTCGGCA-TCTCACGCAAAG---A-CA-TCAC--CT-GC---GAGGAAATGTT-AAGCAGATTTTAAAATGTTAT---TGGA--CCCTACGACAAA-G---TCTTGTCCAATGTT-AAGATTAT-A-CATCTTG-AAGTTGTATAGGC-TGGTCTCAAGATCC-TTAGG-GCTTGCCAAGACAGTCCg
gi|14 : ttAAGAG-CTCAGCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CA-CGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTT-AAGTACCTTGGGTCAGTCGTATCAGA-TGAA-AGGATCAAAGCC-TGAAATTTTCTCCAGGA-TCGCGCAAACAA--AGCCGCcccacgag
gi|15 : TACAAGGAGGGAGAAAGAGAGGCAGGC-AGATAA-AGAG-AT----G-GGAGACAACATCACAGAA-TGGACCGGA-AAGAC-ACTGGGC--GACAAC-TTAAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|16 : AAA-GCTCTTT--ACCAC-----------------AAACTG-AAGTGGTATGGAC-ATGTCACAA-ATCCTTCAGG-ACTCACCAAGATAGTCCT-ACAGGGTACAATGAAAGGAGGGAGAAGAAAAGTCAGAC-A---AA-AGAA-ACGCTGG-GAAGACAATATCCGGGAG-Ttcgtcccgaccaagggataggtg
gi|17 : ggattacgaAACAACACAGAG-TGGACCGGA-AAGAC-A-TGAGC--GACAAC-TTGAGGAGGACAGAGAA-AGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtgtctgagtgacact
gi|18 : GAAAGCAGAGAACAGAAAGGGGTGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtcgtcccgaccaaggatagg
gi|19 : aGA-AGG-AT-T-CAGG--C-AA-CAGAGAT--GA-AATGCTG-CCG--CAGA--CTC--CTTTGCA-TCTCATACAAAGACCG-CA-TCATAtcgtcccgaccaagggataggatag
gi|2 : GAAGTTGAAGCACGCAATCAATTAGCACATGATTAAAGGGAATTCA-CAGGAGTGGATAACTATACCAGGAGAGCTAGTGGCATGCTAGTGCAGGGGAGAGGCCATGATCAACGCCCTGACAACCATCT-CCAAC--AAGATCT--GCAGACAGGAAGAGTTGGCCAACACCATGGACACAATTCACTTGGTGATC-ACCAGCATCCC-CAAGA-AAGGCAAACCTACAGCTGTTTTTGCCAAGAGATCTTACCCCGTGTCGAC--TATTAGGTCCAATAAGTTCACCCCAGTAAAGTCATGTTG--AA-GATCCTGCT-GAACAGACTA-AAACCAC-AGGGCAGAGAAAGATC---TTGCGGAAAAA-GA-AC-A-AGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AGTAC-ACAA--C-AGAACA----GAT---CTTCAA--CCTTCGAA-T---CTGTTGCGAGAGGGTAC-CTCCA-ACACCAACAGAACCCGCATCT--ACC--ATGTCATTTGTGGG-GA----C--TTTAA-GACAGG-CCTTCGAA-C-AG--AGCTCTGGG-CATG-GCAGCT-TT-ATGGGC--AACCAT-TGAGGAT-G-AT----------AACATCAACGCCAGATCTT-GATCAA-CAC------CA---T--ACAACAACTATATGAGCAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGAAGCATAGGGGACTGGCTTCGG--GACAACGGCC--------G-GGGTGTCA-GACAAGGGCTGTTTGCTT-TCCTCCAACTCTCCTTCAA-CATC-TTCTTGGAAAA-GAATCATGACTGGACGCCACTAGAAGAGCACAATGTAAACAGTCAAGC-A-------TTGGAGGCAGCAACACCTAACAATTACCATCCTTGCGTTTTGCCGACGACATTGATGCCACTAATCAGG-GGGAAGAA-CAAGAGCCTC-GCC-AACTTGT-AGAACGATTGGAC---ACC-TCAG-CAGCGTTACGGCATGGAGATCAGTG-CGAGAAAACCAAGCT-GATGACCAAACAACCACCGAC-GCATCAACACA----GACATCAAAGTCCAGTGGCGAGAAA-CTTGAAAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG---AGGATCAAAGCCTTGAAATTCTCTCC
gi|20 : ggaagaagaagaggaaccagaagggtgcaaaaccgtatagggcagttcagccaggaaaatcaaaagagtcaatgaaaggcaaaaagaaaattggattgagagaagtgcctcaagaaatagaaggacaactgtaatgaaaataacagcaaaaaggagcataccaccatagtgaaagaacctagcgttgtccatcgaaacagggcgcaccaaccacctacaggacaaagaagggaagtgcctgacgaggaacagggacattttgaaaacgatggacagagtactgcttcagaactgtacaaccacaaagccacaggaaaaacccagaaagctactgaacgtccctccagacataccaacatcgatgaccactcccatccttcgagaGGAGAG-AACTGGTTTGCCAAGATCAACAGTTTGG-TGGCCCCAACGG
gi|21 : ATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCC-ACGGtcgttcctgaccaaggataggatag
gi|22 : A-GATCTTTTGACCACTGTG-AAGA-GAC-G-GAAATTG-AAGTGGTATGGGC-ATGTCACAAGATCC-tcgtcctcaccaagggataggatag
gi|23 : TACAA-GATTAACA-TCATAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAA
gi|24 : ACAG--TGG-T-GCCCCAACGG
gi|26 : CAACAG--TGG-T-GCCCCAACGGtcgtcccgaccacgggataggtgatag
gi|27 : G-A-AGGATCAAAGCC-TGAAATTCTCTCCAAGT-TCGCtcgtcccgaccaagggataggat
gi|29 : AAGGGAAGTCAGCAGGAGTGGATAAT-ATAC
gi|3 : GAAGCA-GCAGTCAA--AGCAC-TGAAGAAGGGGAAATCAG---GAGTAAATAAC-ATCCCAAGAGAATTAGTA-CAGGC-AG----GGGGAGAGGCCATGATAAGCGCTCTGACTATCATCT-GCAAC--AAGATCT-GACAGACCAGAGAA--TGACCGACACCATGGACACAA-TCAC-TGGTGATT-AC--AC-TCCC-CAAGA-AA--------------TA----TGTCAGAA----T-ACCAC------AC--CATCA-GCCTGATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATAGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AGGATC--ATTGCTG---AA-GA-GC-A-GTTAA-GTTT------------------------T-----AG--C-ACAA--C-AGAACA----AAT---CATCAA--CCTCAGGA-TA--CTG-TGCGAGA-GGTAC-CTCCA-ACTCCAGCAAAACC----TCT--ACC--ACGTC-ATCGC--G-GA----T--TTTAA-AA-AAGCCCTTTA-A-T-AG--GG-TT---------------------TGGGC--GA-AA--TGAGGAC-ATAA----------AACATCAACGCCA-ACC-T-GATCAA-CGT------CA---T--ACAACAACTATATGA-CTGGGCCT---CCAGCG---C-AGTCTA------CCTCAA-TGACAGCATAGGGGACTTG-TTCAG--GACAACGGTCNNNNNNNNN-NNNNN--N-NNNNN-NNNNNNNNNNNN-N-NNNNNNNNNN-NNNNNN-NNNN-NNNNNNN-NNN-NNNNNNNNNNNNNN-N-NNNNNNNNNNNNNNNNNG-GAACAGTC-AGT-A-------TTGGAGGCAG--------GACAATCACAA-ATTTGCTTTTTGTCGAT----TTGTCA-GACTAG-CA-G-GAGAAGAA-CAGAAA-CTC-GCAAAATTAGT-GGAACAACTGGACACAAT-----------------------AGATCAGTGTCGAGAAAACCAAGAT-GATGAC
gi|4 : aaaaaagaaagaaccagatggtgcaaaagagtacagagcagtctgcaagaaatctaaaaaggtttgaaaagggcaccaaaaaattggattgagaaacaatgccaaggaattgaagacgaacagcagcaaaaaggcataccaactaacgaaggacttgacatgcactaaacaagggcacaccgccaccatcattcaggataaacaaggaaaatgtctgacagaggaacaagacattttgaaacgatggacagaatactgctcaaacaataaagccacaggaaaccctggggtactaaacgtaccccagcaacgaacatcgatgaccaccgaatcattcaa--TTTAA-AA-GA--CTTTCG-A-C-AG--AG-TCT--G-CAT--GCAGCT-T--ATG--C--AACCA--TGAGGAT-GTAT----------AACATCAACGCCA-ATC-TTGATCAAGCACC--ATACA---------ACAACTATATTA-CA--GCCT---CCAGCG---CCAGTT-A------CCTCA--CGACA-CATAGGG-ACTGG-TTCGG---ACAACGGTC--------G-GGTC---A-GACAA-GGCTGTTTGCTT-T-ATCCAACTCT-CTTCAA-CATC-TCTTGGG-AAA-GAATCATGACTGAC-G-CACTAGAAGAGCACAATG-GAACAATC-AGC-A-------TTGGAGGCAG--------AA-GATTACAA--CTTGCGTTTTGCCGACAGCATTGACG-AGCTAG-CA-GTGGGAAGAAACAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACCCTCAAACAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGAC--AACAA-CACCGACGGCATCAACACA----GACATCCAAGT-CAGTGGCGAGAAAACTTG--AAC-GTACATAGCTTCAAGTACCTTGGGTCAGTCGTATCAGAATG-A-AGCATCAAAGCC-TGAAATTCTCTCCAGGAATCGCGCAAACAAACAGCCGCTCTCGACAAA-CTGAGG-----CC-GTTTGGATTGACAGAAA-ATCACGCTCAGATCAAAGATCAGACTTGATAGCGATCACTGGTCATCTCCATATTCCTGTACGCCATGTGAGTCATG-ACA---ACA-GCA---ATTT-GGAGAGA-AGA-ATCA-CAGG--C-AAACTGAAAT--GA--ATAC-A-CCG---AGG--CTC----AGGCA-TCTCCTACAAAA--CA-CA-TC-CAA-T-GT-TTGAGG---TACG-GA---GAGTCACAAAC--CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAA--CG-AAGTGGTATGG-C-ATGTCACAAGATCC-ACAG--ACTTGCCAACACAATCCTGACAGAAACCTGTACAAGA--GGAGAAGGAAAGGCAG-C-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGACAAGAT-A-TGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAAAG-AACTGGTT-GCCAA-ATCAACAG--TGGCT-G-CCCAACGG
gi|5 : CGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGAACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCACAAAAAA-CAGCCGCCCT-GACAAAACTGAAATGAAACCTGTTTGGAATGATAGAAATATCACGCTCAGATCAAAG--CAGACT-GAT-GCGATCACTGTTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ATTTTGGAGAGA-AGA-AT-A-TAGG--C-AA-CTGAATT--GA-GATGCTA-CCA--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GT-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG---CAT-C-ACAAA-GATCTTTTGACCACTGTT-AAGA-GACGG-AAAACTG-AAGTGGT-TGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGAAACTGTATAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAGAAG----G-GAGGACAACATCACAGGG-TGGACCGGA-ATGAC-ACTGAGC--GACAACTTTGAGGAGGACAGAGAACAGAAAGGAATGGAGAG-AGCTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtcgtcccgaccaagggataggata
gi|6 : GAAGTTGAAGCA-GCAATCAA--AGCAC-TGAAAAAAGGGAAGTCAGCAGGAGTGGATAAT-ATACCAGGAGAGCTAGTG-CAGAC-AG----GGGGAGAGGCCATGATCAACGCCCTGACAACCATCT-GCAAC--AATATCC-GGCAGACAGGAGAGG-TGGC--AAACCAT-GACACAA-TCAC-TGGTGATC-AC--GC-TCCCACAAGAGAAGGC-AACATACAGCTG----TGCC-GAA----TTACCGC------AC--TATTA-G-CTAATAAG-TCACCCAAGTAAAGTCATGTTGGAAA-GATC-TGCT-GAACAGACTG-AAAC--C-A-GGCAGAG-AAG-TC--ATTGC-G---AATGA-ACAA-AGCAGAGTTT-CAGAGCAGGG---------GCG-C-----AG--T-ACAAC-C-AGAACA----GAT---CTTCAACTCCTCCAGA-TT--CTG-TGCGAGA-GGTAC-CTCCA-ACACCAAC-AAACC----TATCAGCC--ATGTC-TTTGT--GAGATCGTC--TTGAAGAA-GTG-CCTTCG-ACC-AG--AG-TCTG-G-CATAGGCAGCT-TTCATGGGCATAACCATTTGAGGAT-GTAT----------AACATCAACGCCA-ATC-C-GATCAA-CACC--ATACA------ACAACTATAATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCtcaccaagggataggatag
gi|7 : actgaacgtccctccagcaaccaacatcgatgaccatcccatccttcgagaaTGTTG--AA-GATC-TGCTTGAACAAGCTG-AAACCACCA-GGCAGAG-AATGTCTAATTGCGGC--AA-GATAC-ATAGCAG-GTTTTCAGAGCA-TGTGTACTGCAGTG-CCAAGAAG--TTACAAGAC-AGCACACAAAGATAACCTTCAA--CCT-AGTA-TATACTG-TGCGAGA-GGTACTCGCTAGACACCA-CACAGTC----TCTG-ACCCTATGTC-TTTGT--G-GA----CAATGTAG-AA-GG--TCTTCG-A-CCAGTTGG-CC------AT--GCAGCTCTT-ATGGGC--A-CCA--TTAGGAGAGTATGCTGACTAGTAACATCAACGCCA-ATC-T-GATCAA-CACC--ATA--------ACAACAACTAT-TGA-CAAGGCCTATTCCAGCGGCAT-AGTTTGAACCACCCTCAATCGGATGCAT--GGGACTGG-TTCGGCGGA-AACGGTC--------G-GGTCC--A-GACAA-GGCTGTATGCTT-T-CTCCA-CTCT-CTTCAAACATTATCTTTGG-AAAAGATTCATGACTTGA-G-CACTAGAAGGGCACAATG-GAACAGTC-AGCTATTTAATCTTAGAGGCCA--------GACAATTACCA-CTTTGCGCTTGCCCTA-GACAT
gi|8 : C-TGTGAGTCATGGACACTGACACGCAGTCAATT-GGAGAGATAGATAT-A-CAAGGTCGAA-CTGAAATATGATGATGCTAACCG--CAGAGTCTCGGCTAGGCAATCTCCT-TAAAATGCA-CAATCACAAATTGCAT-GAGG---TACGCGAACAGAATCCAAAACG-CAAGATTGGGTTGCCT-C-ACAAAAGATCTTTAGACCA-TGTGGAAGA-GAC-GGAAAACTGCAAGTGGTATGGGCCATGTCACAAGATCC-ACAGGGACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGG-AGAAGGAGAGGCAGGCCAGAGAA-AGAG-AT----GAGAGGACGACATCACAGAGGTGGACCGGA-AAGACAGCTGAGCCCGACAAC-TTGAGGAGGACAGAGAACAGAAAGGGAT-GAGAGAAACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|9 : ATAAGCGCTTTGACTATCATCT-ACAAC--AAGATCT-GACA--CAGGA-AAG-TAGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--AC-TCCC-CAAGA-AAGGC-AACCTACACTTT----TGTCAGAA----TTACCCC------AC--CATCG-GCCTAATAAA-TCACCCCAGTAAGGTTATGTTG--AA-AATAGTGCT-AAACAGGCTG-AAACCAC-A-GGCAGAG-AAGAGT--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-TAGAGCA-GG---------GTA-C-----AG--C-ACAA--C-AAAACA----GAT---CTTCAA--ACTCATGA-TA--CTG-TGTGAGT-GGTTT-CTCCA-ACACCAGCAAAGCC----TAT--ACC--ACATA-TTCGT--G-GA----T--TTTAA-AA-AAG-CCTTTG-T-C-AG--GG-TCTG-G-CAC--AAAGCT-TT-ACAGGC--AATTA--TGAtcgtctcgtcccgaccaagggataggatag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): GAACAGGACATTTTGAAGCGATGGACAGAGTACTGCTCAGAACT
Unaligned ( gi|28 ): TGCCCCAACGGTCGTCCCGACCAAGGGATAGGTGA
Alignments
lowQualScore : 1 11 1 1 1111 11111 1111 1111 111111 11 1 111 111 2222222222222222222 11 1111 1 1111 11 1 111 1111111 11111 3333333333 1111 11 2222222222 111 222222 111 11111 111111 111 22222222222222222 2222222 22222222 11 11 1 1 1 1 11 1 2222 1 11 1 22222 1 1 1 111 111 111 1111 111
lowQualScore : 0 0 33 0 0 1 8 0 0 8 7777 0 66 1 1 6 99 6 33333 66 6 6 6 99 6 6 6 2 6 3 1 4444 4444 1 999999 99 6 3 6 2 44 77 5 22 5 5 999 1 0 000 4 555 5 5 5 99 5 77 5 3333333333333333333 7777 11 5 0000 888 66 5 777 0 5 5 5 2 0000 11 66 0 0 3 000 5 2222222 4 33333 999 4 66 4 0000000000 0000 66 44 11 88 5555555555 5 5 5 5 444 666666 0 5 2 000 00000 0 666666 88 1 2 4 6 000 2 88888888888888888 6 6 0 6 66 5 0 6 6 6 6 6 6 6 0 6 6 6 1111111 44444444 1 55 99 00 0 0 0 0 8 8 11 8 0 8 8 8 3 8 22 0 2 2 1111 0 8 44 3 6 999 5 6 8 0 0 3 55555 3 7 5 0 0 6 1 6 99 1 6 5 5 999 77 5 5 1 77 5 5 77 888 77 1 5 0 77 5 5 1 5 999 000 5 0 6 111 111 6 6 5 0 0 0 5 5 555 11 5 3 5 5 6 8 3 6 6 6 4444 6 5 6 888 99 6 4 4 55 3 3
lowQualScore : . . .. . . . . . . . .... . .. . . . .. . ..... .. . . . .. . . . . . . . .... .... . ...... .. . . . . .. .. . .. . . ... . . ... . ... . . . .. . .. . ................... .... .. . .... ... .. . ... . . . . . .... .. .. . . . ... . ....... . ..... ... . .. . .......... .... .. .. .. .. .......... . . . . ... ...... . . . ... ..... . ...... .. . . . . ... . ................. . . . . .. . . . . . . . . . . . . . ....... ........ . .. .. .. . . . . . . .. . . . . . . . .. . . . .... . . .. . . ... . . . . . . ..... . . . . . . . . .. . . . . ... .. . . . .. . . .. ... .. . . . .. . . . . ... ... . . . ... ... . . . . . . . . ... .. . . . . . . . . . . .... . . . ... .. . . . .. . .
lowQualScore : 7 0 88 0 2 4 0 6 0 0 0000 8 22 0 0 7 22 7 55555 22 7 7 7 22 7 7 7 5 7 2 0 2222 2222 0 222222 22 7 7 7 5 22 99 7 11 7 7 444 4 1 999 9 777 7 7 7 77 7 44 7 5555555555555555555 9999 99 0 6666 888 99 0 222 0 0 0 0 2 6666 99 99 2 0 1 000 0 7777777 4 66666 999 4 11 4 7777777777 1111 99 66 99 44 0000000000 7 7 7 7 444 333333 7 7 3 000 33333 1 444444 33 0 5 2 7 222 5 55555555555555555 7 7 2 7 88 2 8 7 7 7 7 7 7 7 2 7 7 7 7777777 22222222 0 55 66 22 0 0 0 0 0 0 66 0 8 0 0 0 2 0 55 0 5 5 2222 0 0 44 8 7 444 7 7 0 2 0 2 00000 2 0 5 0 0 7 0 7 22 0 7 7 7 999 99 7 7 9 99 7 7 99 333 99 9 7 7 99 0 0 4 7 444 000 7 1 7 777 777 7 7 0 1 4 4 0 0 111 99 7 0 7 7 7 0 7 7 7 7 2222 7 7 7 222 22 7 4 4 00 6 6
consensus : GAAGTCGAAGCA-GCAATCAA--AGCAC-TGAAGAAAGGGAAGTCAGCAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGC-AG----GGGGAGAGGCCATGATCAACGCCCTGACNACCATCT-GCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--GC-TCCC-CAAGA-AAGGC-AACCTACAGCTG----TGCCAGAA----TTACCGC------AC--CATCA-GCCTAATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATCGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AAGATC--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---CTTCAA--CCTCAGGA-TA--CTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACC----TCT--ACC--ACGTC-TTCGC--G-GA----C--TTTAA-AA-GGG-CCTTCG-A-C-AG--GG-TCT--G-CAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-GTAT----------AACATCAACGCCA-ATC-T-GATCAA-CGCC--ATACA---T--ACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGNAGCATAGGGGACTGG-TTCGG--GACAACGGTC--------G-GGTCG--A-GACAA-GGCTGTTTGCTT-T-CTCCAACTCT-CTTCAA-CATC-TTTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGAGCACAATG-GAACAGTC-AGC-A-------TTGGAGGCAG--------GACAATCACAA-NCTTGCGTTTTGCCGACGACATTGACG-GACTAG-CA-G-GGGAAGAA-CAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CACCGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANTT-GGAGAGA-AGG-AT-A-CAGG--C-AA-CTGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAAACTG-AAGTGGTATGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGA-AAGAC-GCTGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
Reference ( family-389 ) : GAAGTCGAAGCA-GCAATCAA--AGCAC-TGAAGAAAGGGAAGTCAGCAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGC-AG----GGGGAGAGGCCATGATCAACGCCCTGACNACCATCT-GCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--GC-TCCC-CAAGA-AAGGC-AACCTACAGCTG----TGCCAGAA----TTACCGC------AC--CATCA-GCCTAATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATCGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AAGATC--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---CTTCAA--CCTCAGGA-TA--CTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACC----TCT--ACC--ACGTC-TTCGC--G-GA----C--TTTAA-AA-GGG-CCTTCG-A-C-AG--GG-TCT--G-CAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-GTAT----------AACATCAACGCCA-ATC-T-GATCAA-CGCC--ATACA---T--ACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGNAGCATAGGGGACTGG-TTCGG--GACAACGGTC--------G-GGTCG--A-GACAA-GGCTGTTTGCTT-T-CTCCAACTCT-CTTCAA-CATC-TTTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGAGCACAATG-GAACAGTC-AGC-A-------TTGGAGGCAG--------GACAATCACAA-NCTTGCGTTTTGCCGACGACATTGACG-GACTAG-CA-G-GGGAAGAA-CAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CACCGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANTT-GGAGAGA-AGG-AT-A-CAGG--C-AA-CTGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAAACTG-AAGTGGTATGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGA-AAGAC-GCTGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|1 : GAATTCGAAGCA-GCAATTAA--AACAA-TGAAGAAGAGAAAATAAGCAGAAGTGGATAAC-ATCCCCGGAGAATTAGTA-CAAGC-TT----GGGAAG---------TT----CTCTGACTATCATTT-GCAAC--AAGATCT-GGCAGAAAAGAGAA--TGGCTGACACCATGGACACAA-TCAA-TGGTGATT-AC--AT-TCCC-CAAGA-AAGGC-AACCAACAACTA----TGTCAGAA----TTATCGC------AC--CATCA-TTCTAATAAG-TAAACC-GGTAAGGTCATGTTA--AA-GATAGTACT-GAACAGTCTG-AAACCAC-A-AGCAGGG-GAGATA--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-TAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---GTTTAA--CCTCGAGAGTA--TTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACT----TCT--ACC--ACATC-TTTGC--G-GA----T--TTTAA-AA-GGG-CCTTTG-A-C-AG--GG-TCT--GATAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-ATAC----------AACACCA-TGTCA-ATC-T-GATCAA-CGTT--ATACA---TGTACAACAACTATATGA-CAGGACCT---CCAATG---C-AGTCTA------CCTCAA-CGGCAGCATGGGGGACTGG-TTCAG--GACAACGGTT--------A-GATTG--A-GGCAA-GGTTGTTTGATC-T-CTCCCACTCT-CTTCAA-CTTC-TTCTTAG-AAA-GAATCATAACTGGA-G-CACTGGAAGACCACATTG-GAACAGTC-AGT-A-------TTGGAGGCAG--------GGCAATCACAA-ACTTGTGTTTTGCCGATGACATTGACG-GACTAG-CA-G-GAGAAAAA-CAGGAA-CTC-GCCA---TTATTGGAACGGCTGGAAACAACC-TCAG-CGGCT-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGTTTGATGACC-AACAG-TACCGATGGCATCAACGCATGCAGACATCAAAGA-AAGTGGCGAGAAA-CTCG-AGACCGTCAACATCTTCAAATATCTTGGATCAGTTATCTCAGA-TG-A-AGGATCAAGATC-AGAAATTCTCTACAGAA-TCGCGCAAACAA-CAGCTGCGCT-GACAAAACTGAGG-----CCTATTTGGAATGTCAGAAACATCACATTCAGCTCAAGG-TCAGACT-GAT-GCCCTCACTGGTCACCTCAATATTTTTGTATGCC-TGTGAGTCGTGGAAACTGACA-GCAG--AAAT-GGAGAGA-AGG-AT-T-CAGG--T-AA-CTGAAAT--GA-GATGCTA-CCG--CAGA--CTC--CTTGGCA-TCTCATACAAAGACCA-CA-CCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ATGTA-GATCTTCTGATTACAGGG-AAGA-GAC-G-AAAATTA-AAGCGGCATGGTC-ATGTCACAAGATCC-ATGGG-ACTTGCCAAAACAATCCT-ACAAGGAACTGTACAAGGAAAGAGAAAGAGAGGAAGAC-AGGGAATTGAG-AT----G-AAGGACAGCATCACAGAG-TGGACAAGA-AAAGC-GATGAGT--GACAAT-CTAAAGAGGGAGGAGGACAGAGAGAAATGGCGAC-AGCTGGTT-ACC-AGAT--GCAG--TGA-T-GTCCCCACGG
gi|10 : GGC-AG----GGGAGAAGGCC--GAGCAACGCCCTGACAACCATCTTGCAACCAAAGATCTTGGCGGACAGG----G-TGGCC-ACA--ATGGACACA--TCAC-TGG-GATTCAT--GC-TCCC--AAGA-AAG-C-A-CCTACAGCTG----TGCCAGAA----TTACCGC------ACACTATTA-GCCTATTA-G-T-ACCCC--TAAAGTCATGTTG--AAAGATCCTGTT-AAACAGACTGAAAACCAC---GGCAGAGAAAGAT---AGCGGTG---AA-GA-AC-A--GCAG-GTTT-CAGAGCA-GG---------CCGCC-----AG--T-ACAA--CAAGAACA-----AT---CTTCAA--CCTCAGAA-TA--CTGTTGCGAAG-GGTAC-CTCCA-ACAACAACAAGAAA----TCT--ACC--ATGTCTTTTGT--G-GA----C--TTTAA-GA-AGG-CCTTCG-ACC-AG--AG-TCT--G-
gi|11 : -C-----AG--C-ACTA--C-AGAACA----GAT---CTTCAA--CCTCAGGG-TA--TTT-TGTGAGA-GATAT-CTCCA-TTACCAGCAAGACC----TCA--ACC--AC--C-T--------------C--TTTA------------------C-AG--G----------AC--TCAA------AAGGGC--A--CA----AGGCT-GTAT----------AACTGCAATGTCA-ACC-T-GATTAA-CGTCTTATACAGTGT--A-AACA--TATATTA-TAAGACCA---CAAGTG---T-AGTGCA------CATCAG-CAGAATCACGGGAGACTGA-TTTAG--AAGTACAGCC--------GTAGTAA--AAGAGAA-G-TTGTCTACTCGT-ATCCATC-CT-CTTCAA-CGTA-TTTCTGG-TAG-GAAAAATAGCTGAA-G-CACTTCAATGTCATAAAG-GGACAGTC-AGA-A-------TTGGAGGAAA--------GATAATCGCAA-gcat
gi|12 : aA-TG-ACAAGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAACCCCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-CGTGAGTCATGGACACTGACA-GCAG--ATTT-GGAGAGA-AGA-AT-A-CAGG--C-AA-GAGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-TAACACAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAT-G-
gi|13 : -TGTGAGACATGGATATTAAT--GCCG--AGAC-AGAGAGA-AAG-AT-ATCAGT--C-A--CGGAGAT--TA-GAAGTTA-CAGACCA----CTA--CTCGGCA-TCTCACGCAAAG---A-CA-TCAC--CT-GC---GAGGAAATGTT-AAGCAGATTTTAAAATGTTAT---TGGA--CCCTACGACAAA-G---TCTTGTCCAATGTT-AAGATTAT-A-CATCTTG-AAGTTGTATAGGC-TGGTCTCAAGATCC-TTAGG-GCTTGCCAAGACAGTCCg
gi|14 : ttAAGAG-CTCAGCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CA-CGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTT-AAGTACCTTGGGTCAGTCGTATCAGA-TGAA-AGGATCAAAGCC-TGAAATTTTCTCCAGGA-TCGCGCAAACAA--AGCCGCcccacgag
gi|15 : TACAAGGAGGGAGAAAGAGAGGCAGGC-AGATAA-AGAG-AT----G-GGAGACAACATCACAGAA-TGGACCGGA-AAGAC-ACTGGGC--GACAAC-TTAAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|16 : AAA-GCTCTTT--ACCAC-----------------AAACTG-AAGTGGTATGGAC-ATGTCACAA-ATCCTTCAGG-ACTCACCAAGATAGTCCT-ACAGGGTACAATGAAAGGAGGGAGAAGAAAAGTCAGAC-A---AA-AGAA-ACGCTGG-GAAGACAATATCCGGGAG-Ttcgtcccgaccaagggataggtg
gi|17 : ggattacgaAACAACACAGAG-TGGACCGGA-AAGAC-A-TGAGC--GACAAC-TTGAGGAGGACAGAGAA-AGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtgtctgagtgacact
gi|18 : GAAAGCAGAGAACAGAAAGGGGTGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtcgtcccgaccaaggatagg
gi|19 : aGA-AGG-AT-T-CAGG--C-AA-CAGAGAT--GA-AATGCTG-CCG--CAGA--CTC--CTTTGCA-TCTCATACAAAGACCG-CA-TCATAtcgtcccgaccaagggataggatag
gi|2 : GAAGTTGAAGCACGCAATCAATTAGCACATGATTAAAGGGAATTCA-CAGGAGTGGATAACTATACCAGGAGAGCTAGTGGCATGCTAGTGCAGGGGAGAGGCCATGATCAACGCCCTGACAACCATCT-CCAAC--AAGATCT--GCAGACAGGAAGAGTTGGCCAACACCATGGACACAATTCACTTGGTGATC-ACCAGCATCCC-CAAGA-AAGGCAAACCTACAGCTGTTTTTGCCAAGAGATCTTACCCCGTGTCGAC--TATTAGGTCCAATAAGTTCACCCCAGTAAAGTCATGTTG--AA-GATCCTGCT-GAACAGACTA-AAACCAC-AGGGCAGAGAAAGATC---TTGCGGAAAAA-GA-AC-A-AGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AGTAC-ACAA--C-AGAACA----GAT---CTTCAA--CCTTCGAA-T---CTGTTGCGAGAGGGTAC-CTCCA-ACACCAACAGAACCCGCATCT--ACC--ATGTCATTTGTGGG-GA----C--TTTAA-GACAGG-CCTTCGAA-C-AG--AGCTCTGGG-CATG-GCAGCT-TT-ATGGGC--AACCAT-TGAGGAT-G-AT----------AACATCAACGCCAGATCTT-GATCAA-CAC------CA---T--ACAACAACTATATGAGCAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGAAGCATAGGGGACTGGCTTCGG--GACAACGGCC--------G-GGGTGTCA-GACAAGGGCTGTTTGCTT-TCCTCCAACTCTCCTTCAA-CATC-TTCTTGGAAAA-GAATCATGACTGGACGCCACTAGAAGAGCACAATGTAAACAGTCAAGC-A-------TTGGAGGCAGCAACACCTAACAATTACCATCCTTGCGTTTTGCCGACGACATTGATGCCACTAATCAGG-GGGAAGAA-CAAGAGCCTC-GCC-AACTTGT-AGAACGATTGGAC---ACC-TCAG-CAGCGTTACGGCATGGAGATCAGTG-CGAGAAAACCAAGCT-GATGACCAAACAACCACCGAC-GCATCAACACA----GACATCAAAGTCCAGTGGCGAGAAA-CTTGAAAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG---AGGATCAAAGCCTTGAAATTCTCTCC
gi|20 : ggaagaagaagaggaaccagaagggtgcaaaaccgtatagggcagttcagccaggaaaatcaaaagagtcaatgaaaggcaaaaagaaaattggattgagagaagtgcctcaagaaatagaaggacaactgtaatgaaaataacagcaaaaaggagcataccaccatagtgaaagaacctagcgttgtccatcgaaacagggcgcaccaaccacctacaggacaaagaagggaagtgcctgacgaggaacagggacattttgaaaacgatggacagagtactgcttcagaactgtacaaccacaaagccacaggaaaaacccagaaagctactgaacgtccctccagacataccaacatcgatgaccactcccatccttcgagaGGAGAG-AACTGGTTTGCCAAGATCAACAGTTTGG-TGGCCCCAACGG
gi|21 : ATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCC-ACGGtcgttcctgaccaaggataggatag
gi|22 : A-GATCTTTTGACCACTGTG-AAGA-GAC-G-GAAATTG-AAGTGGTATGGGC-ATGTCACAAGATCC-tcgtcctcaccaagggataggatag
gi|23 : TACAA-GATTAACA-TCATAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAA
gi|24 : ACAG--TGG-T-GCCCCAACGG
gi|26 : CAACAG--TGG-T-GCCCCAACGGtcgtcccgaccacgggataggtgatag
gi|27 : G-A-AGGATCAAAGCC-TGAAATTCTCTCCAAGT-TCGCtcgtcccgaccaagggataggat
gi|29 : AAGGGAAGTCAGCAGGAGTGGATAAT-ATAC
gi|3 : GAAGCA-GCAGTCAA--AGCAC-TGAAGAAGGGGAAATCAG---GAGTAAATAAC-ATCCCAAGAGAATTAGTA-CAGGC-AG----GGGGAGAGGCCATGATAAGCGCTCTGACTATCATCT-GCAAC--AAGATCT-GACAGACCAGAGAA--TGACCGACACCATGGACACAA-TCAC-TGGTGATT-AC--AC-TCCC-CAAGA-AA--------------TA----TGTCAGAA----T-ACCAC------AC--CATCA-GCCTGATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATAGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AGGATC--ATTGCTG---AA-GA-GC-A-GTTAA-GTTT------------------------T-----AG--C-ACAA--C-AGAACA----AAT---CATCAA--CCTCAGGA-TA--CTG-TGCGAGA-GGTAC-CTCCA-ACTCCAGCAAAACC----TCT--ACC--ACGTC-ATCGC--G-GA----T--TTTAA-AA-AAGCCCTTTA-A-T-AG--GG-TT---------------------TGGGC--GA-AA--TGAGGAC-ATAA----------AACATCAACGCCA-ACC-T-GATCAA-CGT------CA---T--ACAACAACTATATGA-CTGGGCCT---CCAGCG---C-AGTCTA------CCTCAA-TGACAGCATAGGGGACTTG-TTCAG--GACAACGGTCNNNNNNNNN-NNNNN--N-NNNNN-NNNNNNNNNNNN-N-NNNNNNNNNN-NNNNNN-NNNN-NNNNNNN-NNN-NNNNNNNNNNNNNN-N-NNNNNNNNNNNNNNNNNG-GAACAGTC-AGT-A-------TTGGAGGCAG--------GACAATCACAA-ATTTGCTTTTTGTCGAT----TTGTCA-GACTAG-CA-G-GAGAAGAA-CAGAAA-CTC-GCAAAATTAGT-GGAACAACTGGACACAAT-----------------------AGATCAGTGTCGAGAAAACCAAGAT-GATGAC
gi|4 : aaaaaagaaagaaccagatggtgcaaaagagtacagagcagtctgcaagaaatctaaaaaggtttgaaaagggcaccaaaaaattggattgagaaacaatgccaaggaattgaagacgaacagcagcaaaaaggcataccaactaacgaaggacttgacatgcactaaacaagggcacaccgccaccatcattcaggataaacaaggaaaatgtctgacagaggaacaagacattttgaaacgatggacagaatactgctcaaacaataaagccacaggaaaccctggggtactaaacgtaccccagcaacgaacatcgatgaccaccgaatcattcaa--TTTAA-AA-GA--CTTTCG-A-C-AG--AG-TCT--G-CAT--GCAGCT-T--ATG--C--AACCA--TGAGGAT-GTAT----------AACATCAACGCCA-ATC-TTGATCAAGCACC--ATACA---------ACAACTATATTA-CA--GCCT---CCAGCG---CCAGTT-A------CCTCA--CGACA-CATAGGG-ACTGG-TTCGG---ACAACGGTC--------G-GGTC---A-GACAA-GGCTGTTTGCTT-T-ATCCAACTCT-CTTCAA-CATC-TCTTGGG-AAA-GAATCATGACTGAC-G-CACTAGAAGAGCACAATG-GAACAATC-AGC-A-------TTGGAGGCAG--------AA-GATTACAA--CTTGCGTTTTGCCGACAGCATTGACG-AGCTAG-CA-GTGGGAAGAAACAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACCCTCAAACAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGAC--AACAA-CACCGACGGCATCAACACA----GACATCCAAGT-CAGTGGCGAGAAAACTTG--AAC-GTACATAGCTTCAAGTACCTTGGGTCAGTCGTATCAGAATG-A-AGCATCAAAGCC-TGAAATTCTCTCCAGGAATCGCGCAAACAAACAGCCGCTCTCGACAAA-CTGAGG-----CC-GTTTGGATTGACAGAAA-ATCACGCTCAGATCAAAGATCAGACTTGATAGCGATCACTGGTCATCTCCATATTCCTGTACGCCATGTGAGTCATG-ACA---ACA-GCA---ATTT-GGAGAGA-AGA-ATCA-CAGG--C-AAACTGAAAT--GA--ATAC-A-CCG---AGG--CTC----AGGCA-TCTCCTACAAAA--CA-CA-TC-CAA-T-GT-TTGAGG---TACG-GA---GAGTCACAAAC--CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAA--CG-AAGTGGTATGG-C-ATGTCACAAGATCC-ACAG--ACTTGCCAACACAATCCTGACAGAAACCTGTACAAGA--GGAGAAGGAAAGGCAG-C-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGACAAGAT-A-TGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAAAG-AACTGGTT-GCCAA-ATCAACAG--TGGCT-G-CCCAACGG
gi|5 : CGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGAACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCACAAAAAA-CAGCCGCCCT-GACAAAACTGAAATGAAACCTGTTTGGAATGATAGAAATATCACGCTCAGATCAAAG--CAGACT-GAT-GCGATCACTGTTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ATTTTGGAGAGA-AGA-AT-A-TAGG--C-AA-CTGAATT--GA-GATGCTA-CCA--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GT-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG---CAT-C-ACAAA-GATCTTTTGACCACTGTT-AAGA-GACGG-AAAACTG-AAGTGGT-TGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGAAACTGTATAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAGAAG----G-GAGGACAACATCACAGGG-TGGACCGGA-ATGAC-ACTGAGC--GACAACTTTGAGGAGGACAGAGAACAGAAAGGAATGGAGAG-AGCTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtcgtcccgaccaagggataggata
gi|6 : GAAGTTGAAGCA-GCAATCAA--AGCAC-TGAAAAAAGGGAAGTCAGCAGGAGTGGATAAT-ATACCAGGAGAGCTAGTG-CAGAC-AG----GGGGAGAGGCCATGATCAACGCCCTGACAACCATCT-GCAAC--AATATCC-GGCAGACAGGAGAGG-TGGC--AAACCAT-GACACAA-TCAC-TGGTGATC-AC--GC-TCCCACAAGAGAAGGC-AACATACAGCTG----TGCC-GAA----TTACCGC------AC--TATTA-G-CTAATAAG-TCACCCAAGTAAAGTCATGTTGGAAA-GATC-TGCT-GAACAGACTG-AAAC--C-A-GGCAGAG-AAG-TC--ATTGC-G---AATGA-ACAA-AGCAGAGTTT-CAGAGCAGGG---------GCG-C-----AG--T-ACAAC-C-AGAACA----GAT---CTTCAACTCCTCCAGA-TT--CTG-TGCGAGA-GGTAC-CTCCA-ACACCAAC-AAACC----TATCAGCC--ATGTC-TTTGT--GAGATCGTC--TTGAAGAA-GTG-CCTTCG-ACC-AG--AG-TCTG-G-CATAGGCAGCT-TTCATGGGCATAACCATTTGAGGAT-GTAT----------AACATCAACGCCA-ATC-C-GATCAA-CACC--ATACA------ACAACTATAATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCtcaccaagggataggatag
gi|7 : actgaacgtccctccagcaaccaacatcgatgaccatcccatccttcgagaaTGTTG--AA-GATC-TGCTTGAACAAGCTG-AAACCACCA-GGCAGAG-AATGTCTAATTGCGGC--AA-GATAC-ATAGCAG-GTTTTCAGAGCA-TGTGTACTGCAGTG-CCAAGAAG--TTACAAGAC-AGCACACAAAGATAACCTTCAA--CCT-AGTA-TATACTG-TGCGAGA-GGTACTCGCTAGACACCA-CACAGTC----TCTG-ACCCTATGTC-TTTGT--G-GA----CAATGTAG-AA-GG--TCTTCG-A-CCAGTTGG-CC------AT--GCAGCTCTT-ATGGGC--A-CCA--TTAGGAGAGTATGCTGACTAGTAACATCAACGCCA-ATC-T-GATCAA-CACC--ATA--------ACAACAACTAT-TGA-CAAGGCCTATTCCAGCGGCAT-AGTTTGAACCACCCTCAATCGGATGCAT--GGGACTGG-TTCGGCGGA-AACGGTC--------G-GGTCC--A-GACAA-GGCTGTATGCTT-T-CTCCA-CTCT-CTTCAAACATTATCTTTGG-AAAAGATTCATGACTTGA-G-CACTAGAAGGGCACAATG-GAACAGTC-AGCTATTTAATCTTAGAGGCCA--------GACAATTACCA-CTTTGCGCTTGCCCTA-GACAT
gi|8 : C-TGTGAGTCATGGACACTGACACGCAGTCAATT-GGAGAGATAGATAT-A-CAAGGTCGAA-CTGAAATATGATGATGCTAACCG--CAGAGTCTCGGCTAGGCAATCTCCT-TAAAATGCA-CAATCACAAATTGCAT-GAGG---TACGCGAACAGAATCCAAAACG-CAAGATTGGGTTGCCT-C-ACAAAAGATCTTTAGACCA-TGTGGAAGA-GAC-GGAAAACTGCAAGTGGTATGGGCCATGTCACAAGATCC-ACAGGGACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGG-AGAAGGAGAGGCAGGCCAGAGAA-AGAG-AT----GAGAGGACGACATCACAGAGGTGGACCGGA-AAGACAGCTGAGCCCGACAAC-TTGAGGAGGACAGAGAACAGAAAGGGAT-GAGAGAAACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|9 : ATAAGCGCTTTGACTATCATCT-ACAAC--AAGATCT-GACA--CAGGA-AAG-TAGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--AC-TCCC-CAAGA-AAGGC-AACCTACACTTT----TGTCAGAA----TTACCCC------AC--CATCG-GCCTAATAAA-TCACCCCAGTAAGGTTATGTTG--AA-AATAGTGCT-AAACAGGCTG-AAACCAC-A-GGCAGAG-AAGAGT--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-TAGAGCA-GG---------GTA-C-----AG--C-ACAA--C-AAAACA----GAT---CTTCAA--ACTCATGA-TA--CTG-TGTGAGT-GGTTT-CTCCA-ACACCAGCAAAGCC----TAT--ACC--ACATA-TTCGT--G-GA----T--TTTAA-AA-AAG-CCTTTG-T-C-AG--GG-TCTG-G-CAC--AAAGCT-TT-ACAGGC--AATTA--TGAtcgtctcgtcccgaccaagggataggatag
blockSeqs : C TT A T T G T TGCA AT C A T CA T AGAGT CA T T C CA A A G G A A G TTTT GATC G GTGTCG AC G C T C CA GA A CC T A AG A CTA T AAA T T A TA A TC G TGTACTGCAGTGCCAAGA TAC GA A CAAA AAC CT . ATA T G T G A CGCA CA CT T T TGG A TCGTC G CAGG AC C TT C TGGGCATG TTC AT AC TT GA GCTGACTAGT G T T G CTT GTGT G A ATT GCAT AACCAC AT A T G C CGG G NNNNNNNNNNNNNN A G G CC T C A A A A C C T A T TTTAATC CAACACCT T TC CG CC T G T A C A AA . C A T C . CA C C G . C A AA T A AC T A A C A TGAAA T T A T A A C C TC T T T T AT GT G A A AT T A AC AGT GG A A AC A A A T TT AAA C T GAT TTG A G A G T GG CT C G C T G G G C . A GCTG A G C AGC CC T A T TT C G
blockSeqs : . . . G . . . . AT C A . . . GAGG CG . . . . . . . G . A G . . C . . . T . C CA . . CC . . CA A C G C . . . A . C . CCGCC TT C . . . . . A T . . . G . G . A T T . CAA . AAGC AA . . . TGGCATAG CTT . AC T T . . . . . C T . A . CC . G A G A . A C GGGGTGTC . . . A A . . . . . . . . . . . . C A CA G . . . . . . AA . . . . T . C . C G . . . G T . AA . . . . A . T T A . . . T . . G . . . CA . . . G . . . . G . C . AC . . C . AT . . . . G . . . . . GG AC . A . . . . A . . . . . . . AC . . . . . . .
blockSeqs : . . . A . . . . AT A T . . . GAA CG . . . . . . . G . A G . . A . . . C . C AA . . AG . . A . C T . . . . G . C . GCGC T . . . . . . A . . . . A . . . . C C . C . AGG AC . . . TGGCAC TT . AC . T . . . . . C T . G . T . A C G A . G C GTAGTAA . . . N N . . . . . . . . . . . . C C T A . . . . . . AA . . . . C . . . . . . . . G T . A . . . . . . . . . . . . C . . T . . . A . . . A . . . . A . T . AT . . A . T . . . . C . . . . . G AT . G . . . . G . . . . . . . AC . . . . . . .
blockSeqs : G . . . . C A . . . AAG C . . . . . . . . . . C . . G . . . C . C CA . . AG . . A . C G . . . . A . C . GCGC C . . . . . . A . . . . G . . . . T T . C . GTG A . . . TGCAT TT . AT . C . . . . . C . . A . C . A C G A . G C GGGTCC . . . A A . . . . . . . . . . . . C . G . . A . . . . . . . . . . A . . . . C . . T . . . T . . . T . . . . G . A . AC . . A . T . . . . G . . . . . A AC . G . . . . G . . . . . . . A . . . . . . .
blockSeqs : A T . . . G . . . . . . . . . . . . . . C . . . . . . C . . C . . A . T T . . . . G . T . GTAC C . . . . . . T . . . . A . . . . T T . C . AAG A . . . AC T . A . T . . . . . . . . A . C . . A . . . . . GGGTC . . . C . . . . . . . . . . . . . . . A . . . . . . A . . . A . . . T . . . . G . A . TG . . A . T . . . . . . . . . . G AC . G . . . . . . . . . . . A . . . . . . .
blockSeqs : . . C . . . . . . . . . . . . . . T T . . . . . . A . . . . G . . . . C T . T . GA A . . . AT . . C . T . . . . . . . . . . C . . . . . A . . . T . . . . . . A . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : C . . . . . . . . . . . . . . . . . . . T . GG T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : AT CA TGGCAT**** T***** GGGTNC*********** CG AA
originalCons : GAAGTCGAAGCA-GCAATCAA--AGCAC-TGAAGAAAGGGAAGTCAGCAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGC-AG----GGGGAGAGGCCATGATCAACGCCCTGACNACCATCT-GCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--GC-TCCC-CAAGA-AAGGC-AACCTACAGCTG----TGCCAGAA----TTACCGC------AC--CATCA-GCCTAATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATCGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AAGATC--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---CTTCAA--CCTCAGGA-TA--CTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACC----TCT--ACC--ACGTC-TTCGC--G-GA----C--TTTAA-AA-GGG-CCTTCG-A-C-AG--GG-TCT--G-CAC--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-GTAT----------AACATCAACGCCA-ATC-T-GATCAA-CGCC--ATACA---T--ACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGNAGCATAGGGGACTGG-TTCGG--GACAACGGTC--------G-GGTCG--A-GACAA-GGCTGTTTGCTT-T-CTCCAACTCT-CTTCAA-CATC-TTTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGAGCACAATG-GAACAGTC-AGC-A-------TTGGAGGCAG--------GACAATCACAA-NCTTGCGTTTTGCCGACGACATTGACG-GACTAG-CA-G-GGGAAGAA-CAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CACCGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANTT-GGAGAGA-AGG-AT-A-CAGG--C-AA-CTGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAAACTG-AAGTGGTATGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGA-AAGAC-GCTGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
finalCons : GAAGTCGAAGCA-GCAATCAA--AGCAC-TGAAGAAAGGGAAGTCAGCAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGC-AG----GGGGAGAGGCCATGATCAACGCCCTGACNACCATCT-GCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--GC-TCCC-CAAGA-AAGGC-AACCTACAGCTG----TGCCAGAA----TTACCGC------AC--CATCA-GCCTAATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATCGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AAGATC--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---CTTCAA--CCTCAGGA-TA--CTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACC----TCT--ACC--ACGTC-TTCGC--G-GA----C--TTTAA-AA-GGG-CCTTCG-A-C-AG--GG-TCTGGCAT----GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-GTAT----------AACATCAACGCCA-ATC-T-GATCAA-CGCC--ATACAT-----ACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGNAGCATAGGGGACTGG-TTCGG--GACAACGGTCGGGTNC-----------A-GACAA-GGCTGTTTGCTT-T-CTCCAACTCT-CTTCAA-CATC-TTTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGAGCACAATG-GAACAGTC-AGC-A-------TTGGAGGCAG--------GACAATCACAA-NCTTGCGTTTTGCCGACGACATTGACG-GACTAG-CA-G-GGGAAGAA-CAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACC-TCAG-CAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CACCGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAGAAA-CTTG-GAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAGA-TG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGGA-TCGCGCAAACAA-CAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGACT-GAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANTT-GGAGAGA-AGG-AT-A-CAGG--C-AA-CTGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-GC-T-GAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAAACTG-AAGTGGTATGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGA-AAGAC-GCTGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): GAACAGGACATTTTGAAGCGATGGACAGAGTACTGCTCAGAACT
Unaligned ( gi|28 ): TGCCCCAACGGTCGTCCCGACCAAGGGATAGGTGA
Alignments
lowQualScore : 1 11 1 1 1111 11111 1111 1111 111111 11 1 111 111 2222222222222222222 11 1111 1 1111 11 1 11 1111111 1111111 11 2222222222 111 222222 111 11111 111111 111 3333333333333333 2222222 22222222 11 11 1 1 1 1 1 1 2222 1 1 22222 1 1 1 1111 111 111 111 1111 111
lowQualScore : 0 0 33 0 0 1 8 0 0 8 7777 0 66 1 1 6 99 6 33333 66 6 6 6 99 6 6 6 2 6 3 1 4444 4444 1 999999 99 6 3 6 2 44 77 5 22 5 5 999 1 0 000 4 555 5 5 5 99 5 77 5 3333333333333333333 7777 11 5 0000 888 66 5 777 0 5 5 5 2 0000 11 66 0 2 11 5 2222222 4 4 55 4 8 4 4 4444444 7777 33 66 1 11 99 5555555555 5 5 5 5 444 666666 0 5 2 000 00000 0 666666 88 1 2 4 6 000 2 4444444444444444 66 6 66 5 0 6 6 6 6 6 6 6 0 6 6 6 1111111 44444444 1 55 99 00 0 0 0 0 8 8 11 8 0 8 8 8 3 8 0 0 2 2 1111 0 8 8 3 6 999 5 6 8 0 0 3 55555 3 7 5 0 0 6 1 6 99 1 6 5 5 999 1111 1 77 5 5 77 888 77 1 5 0 77 5 5 3 5 666 000 5 6 111 111 6 6 5 0 0 0 5 5 555 11 5 5 5 6 8 6 6 6 4444 6 5 6 888 99 6 4 4 55 3 3
lowQualScore : . . .. . . . . . . . .... . .. . . . .. . ..... .. . . . .. . . . . . . . .... .... . ...... .. . . . . .. .. . .. . . ... . . ... . ... . . . .. . .. . ................... .... .. . .... ... .. . ... . . . . . .... .. .. . . .. . ....... . . .. . . . . ....... .... .. .. . .. .. .......... . . . . ... ...... . . . ... ..... . ...... .. . . . . ... . ................ .. . .. . . . . . . . . . . . . . ....... ........ . .. .. .. . . . . . . .. . . . . . . . . . . . .... . . . . . ... . . . . . . ..... . . . . . . . . .. . . . . ... .... . .. . . .. ... .. . . . .. . . . . ... ... . . ... ... . . . . . . . . ... .. . . . . . . . . .... . . . ... .. . . . .. . .
lowQualScore : 7 0 88 0 2 4 0 6 0 0 0000 8 22 0 0 7 22 7 55555 22 7 7 7 22 7 7 7 5 7 2 0 2222 2222 0 222222 22 7 7 7 5 22 99 7 11 7 7 444 4 1 999 9 777 7 7 7 77 7 44 7 5555555555555555555 9999 99 0 6666 888 99 0 222 0 0 0 0 2 6666 99 99 0 0 99 0 7777777 4 4 66 4 9 4 4 0000000 1111 99 99 4 99 77 0000000000 7 7 7 7 444 333333 7 7 3 000 33333 1 444444 33 0 5 2 7 222 5 7777777777777777 88 7 88 2 8 7 7 7 7 7 7 7 2 7 7 7 7777777 22222222 0 55 66 22 0 0 0 0 0 0 66 0 8 0 0 0 2 0 0 0 5 5 2222 0 0 0 8 7 444 7 7 0 2 0 2 00000 2 0 5 0 0 7 0 7 22 0 7 7 7 999 6666 9 99 7 7 99 333 99 9 7 7 99 0 0 2 7 000 000 7 7 777 777 7 7 0 1 4 4 0 0 111 99 7 7 7 7 0 7 7 7 2222 7 7 7 222 22 7 4 4 00 6 6
consensus : GAAGTCGAAGCA-GCAATCAA--AGCAC-TGAAGAAAGGGAAGTCAGCAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGC-AG----GGGGAGAGGCCATGATCAACGCCCTGACNACCATCT-GCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--GC-TCCC-CAAGA-AAGGC-AACCTACAGCTG----TGCCAGAA----TTACCGC------AC--CATCA-GCCTAATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATCGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AAGATC--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---CTTCAA--CCTCAGGA-TA--CTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACC----TCT--ACC--ACGTC-TTTGC--G-GA----C--TTTAA-AA-GGG-CCTTCG-A-CAGGG-TCT-GGC-AC--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-GTAT----------AACATCAACGCCA-ATC-T-GATCAA-CGCC--ATACA---T--ACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGNAGCATAGGGGACTGG-TTCGG--GACAACGGTC--------G-GGT-NCAGACAA-GGCTGTTTGCTT-T-CTCCAACTCT-CTTCAA-CATC-TTTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGAGCACAATG-GAACAGTC-AGC-A-------TTGGAGGCAG--------GACAATCACAA-NCTTGCGTTTTGCCGACGACATTGACG-GACTAG-CA-G-GGGAAG-AACAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAA-CCTC-AGCAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CACCGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAG-AAACTTG-GAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAG-ATG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGG-ATCGCGCAAAC-AACAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGAC-TGAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANTT-GGAGAGA-AGG-AT-A-CAGG--C-AACTGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-G-C-TGAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAAACTG-AAGTGGTATGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGA-AAGAC-GCTGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
Reference ( family-389 ) : GAAGTCGAAGCA-GCAATCAA--AGCAC-TGAAGAAAGGGAAGTCAGCAGGAGTGGATAAC-ATACCAGGAGAGCTAGTG-CAGGC-AG----GGGGAGAGGCCATGATCAACGCCCTGACNACCATCT-GCAAC--AAGATCT-GGCAGACAGGAGAAG-TGGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--GC-TCCC-CAAGA-AAGGC-AACCTACAGCTG----TGCCAGAA----TTACCGC------AC--CATCA-GCCTAATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATCGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AAGATC--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---CTTCAA--CCTCAGGA-TA--CTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACC----TCT--ACC--ACGTC-TTCGC--G-GA----C--TTTAA-AA-GGG-CCTTCG-A-CAGGG-TCT-GGC-AT--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-GTAT----------AACATCAACGCCA-ATC-T-GATCAA-CGCC--ATACA---T--ACAACAACTATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGNAGCATAGGGGACTGG-TTCGG--GACAACGGTC--------G-GGT-NCAGACAA-GGCTGTTTGCTT-T-CTCCAACTCT-CTTCAA-CATC-TTTTTGG-AAA-GAATCATGACTGGA-G-CACTAGAAGAGCACAATG-GAACAGTC-AGC-A-------TTGGAGGCAG--------GACAATCACAA-NCTTGCGTTTTGCCGACGACATTGACG-GACTAG-CA-G-GGGAAG-AACAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAA-CCTC-AGCAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CACCGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAG-AAACTTG-GAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAG-ATG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGG-ATCGCGCAAAC-AACAGCCGCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGAC-TGAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ANTT-GGAGAGA-AGG-AT-A-CAGG--C-AACTGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-G-C-TGAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAAACTG-AAGTGGTATGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGA-AAGAC-GCTGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|1 : GAATTCGAAGCA-GCAATTAA--AACAA-TGAAGAAGAGAAAATAAGCAGAAGTGGATAAC-ATCCCCGGAGAATTAGTA-CAAGC-TT----GGGAAG---------TT----CTCTGACTATCATTT-GCAAC--AAGATCT-GGCAGAAAAGAGAA--TGGCTGACACCATGGACACAA-TCAA-TGGTGATT-AC--AT-TCCC-CAAGA-AAGGC-AACCAACAACTA----TGTCAGAA----TTATCGC------AC--CATCA-TTCTAATAAG-TAAACC-GGTAAGGTCATGTTA--AA-GATAGTACT-GAACAGTCTG-AAACCAC-A-AGCAGGG-GAGATA--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-TAGAGCA-GG---------GCG-C-----AG--C-ACAA--C-AGAACA----GAT---GTTTAA--CCTCGAGAGTA--TTG-TGCGAGA-GGTAC-CTCCA-ACACCAGCAAAACT----TCT--ACC--ACATC-TTTGC--G-GA----T--TTTAA-AA-GGG-CCTTTG-A-CAGGG-TCT-GAT-AC--GCAGCT-TT-ATGGGC--AACCA--TGAGGAC-ATAC----------AACACCA-TGTCA-ATC-T-GATCAA-CGTT--ATACA---TGTACAACAACTATATGA-CAGGACCT---CCAATG---C-AGTCTA------CCTCAA-CGGCAGCATGGGGGACTGG-TTCAG--GACAACGGTT--------A-GAT-TGAGGCAA-GGTTGTTTGATC-T-CTCCCACTCT-CTTCAA-CTTC-TTCTTAG-AAA-GAATCATAACTGGA-G-CACTGGAAGACCACATTG-GAACAGTC-AGT-A-------TTGGAGGCAG--------GGCAATCACAA-ACTTGTGTTTTGCCGATGACATTGACG-GACTAG-CA-G-GAGAAA-AACAGGAA-CTC-GCCA---TTATTGGAACGGCTGGAAACAA-CCTC-AGCGGCT-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGTTTGATGACC-AACAG-TACCGATGGCATCAACGCATGCAGACATCAAAGA-AAGTGGCGAG-AAACTCG-AGACCGTCAACATCTTCAAATATCTTGGATCAGTTATCTCAG-ATG-A-AGGATCAAGATC-AGAAATTCTCTACAGA-ATCGCGCAAAC-AACAGCTGCGCT-GACAAAACTGAGG-----CCTATTTGGAATGTCAGAAACATCACATTCAGCTCAAGG-TCAGAC-TGAT-GCCCTCACTGGTCACCTCAATATTTTTGTATGCC-TGTGAGTCGTGGAAACTGACA-GCAG--AAAT-GGAGAGA-AGG-AT-T-CAGG--T-AACTGAAAT--GA-GATGCTA-CCG--CAGA--CTC--CTTGGCA-TCTCATACAAAGACCA-CA-CCACAAAT-G-C-TGAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG--GCCT-C-ATGTA-GATCTTCTGATTACAGGG-AAGA-GAC-G-AAAATTA-AAGCGGCATGGTC-ATGTCACAAGATCC-ATGGG-ACTTGCCAAAACAATCCT-ACAAGGAACTGTACAAGGAAAGAGAAAGAGAGGAAGAC-AGGGAATTGAG-AT----G-AAGGACAGCATCACAGAG-TGGACAAGA-AAAGC-GATGAGT--GACAAT-CTAAAGAGGGAGGAGGACAGAGAGAAATGGCGAC-AGCTGGTT-ACC-AGAT--GCAG--TGA-T-GTCCCCACGG
gi|10 : GGC-AG----GGGAGAAGGCC--GAGCAACGCCCTGACAACCATCTTGCAACCAAAGATCTTGGCGGACAGG----G-TGGCC-ACA--ATGGACACA--TCAC-TGG-GATTCAT--GC-TCCC--AAGA-AAG-C-A-CCTACAGCTG----TGCCAGAA----TTACCGC------ACACTATTA-GCCTATTA-G-T-ACCCC--TAAAGTCATGTTG--AAAGATCCTGTT-AAACAGACTGAAAACCAC---GGCAGAGAAAGAT---AGCGGTG---AA-GA-AC-A--GCAG-GTTT-CAGAGCA-GG---------CCGCC-----AG--T-ACAA--CAAGAACA-----AT---CTTCAA--CCTCAGAA-TA--CTGTTGCGAAG-GGTAC-CTCCA-ACAACAACAAGAAA----TCT--ACC--ATGTCTTTTGT--G-GA----C--TTTAA-GA-AGG-CCTTCG-ACCAGAG-TCT-GGC-AT--
gi|11 : -C-----AG--C-ACTA--C-AGAACA----GAT---CTTCAA--CCTCAGGG-TA--TTT-TGTGAGA-GATAT-CTCCA-TTACCAGCAAGACC----TCA--ACC--ACCTC-TTTACA-G-GA----C---TCAA-AA-GGG-C------A-CAAGG--CT-G---------------T-AT------AAC-------------TGC----------AATGTCAAC-------C-T-GATTAA-CGTCTTATACAGTGT--A-AACA--TATATTA-TAAGACCA---CAAGTG---T-AGTGCA------CATCAG-CAGAATCACGGGAGACTGA-TTTAG--AAGTACAGCC--------GTAGTAAAAGAGAA--GTTGTCTACTCGT-ATCCATC-CT-CTTCAA-CGTA-TTTCTGG-TAG-GAAAAATAGCTGAA-G-CACTTCAATGTCATAAAG-GGACAGTC-AGA-A-------TTGGAGGAAA--------GATAATCGCAA-
gi|12 : a-ATG-ACAAGATCAAAGCC-TGAAATTCTCTCCAGG-ATCGCGCAAAC-AACAACCCCCCT-GACAAAACTGAGG-----CCTGTTTGGAATGACAGAAATATCACGCTCAGATCAAAGATCAGAC-TGAT-GCGATCACTGGTCATCTCCATATTCCTGTACGCC-CGTGAGTCATGGACACTGACA-GCAG--ATTT-GGAGAGA-AGA-AT-A-CAGG--C-AAGAGAAAT--GA-GATGCTA-CCG--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-G-C-TGAGG---TACG-TAACACAGTCACAAACG-CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAT-G-
gi|13 : -TGTGAGACATGGATATTAAT--GCCG--AGAC-AGAGAGA-AAG-AT-ATCAGT--C-A-CGGAGAT--TA-GAAGTTA-CAGACCA----CTA--CTCGGCA-TCTCACGCAAAG---A-CA-TCAC--CT-G-C--GAGGAAATGTT-AAGCAGATTTTAAAATGTTAT---TGGA--CCCTACGACAAA-G---TCTTGTCCAATGTT-AAGATTAT-A-CATCTTG-AAGTTGTATAGGC-TGGTCTCAAGATCC-TTAGG-GCTTGCCAAGACAGTCCg
gi|14 : ttAAGAG-CTCAGCCAAACTTGT-AGAACGATTGGACACAA-CCTC-AGCAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGACC-AACAA-CA-CGACGGCATCAACACA----GACATCAAAGT-CAGTGGCGAG-AAACTTG-GAACTGTCAAGAGCTT-AAGTACCTTGGGTCAGTCGTATCAG-ATGAA-AGGATCAAAGCC-TGAAATTTTCTCCAGG-ATCGCGCAAAC-AA-AGCCGCcccacgag
gi|15 : TACAAGGAGGGAGAAAGAGAGGCAGGC-AGATAA-AGAG-AT----G-GGAGACAACATCACAGAA-TGGACCGGA-AAGAC-ACTGGGC--GACAAC-TTAAGGAGGACAGAGAACAGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|16 : AAA-GCTCTTT--ACCAC-----------------AAACTG-AAGTGGTATGGAC-ATGTCACAA-ATCCTTCAGG-ACTCACCAAGATAGTCCT-ACAGGGTACAATGAAAGGAGGGAGAAGAAAAGTCAGAC-A---AA-AGAA-ACGCTGG-GAAGACAATATCCGGGAG-Ttcgtcccgaccaagggataggtg
gi|17 : ggattacgaAACAACACAGAG-TGGACCGGA-AAGAC-A-TGAGC--GACAAC-TTGAGGAGGACAGAGAA-AGAAAGGGATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtgtctgagtgacact
gi|18 : GAAAGCAGAGAACAGAAAGGGGTGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtcgtcccgaccaaggatagg
gi|19 : aGA-AGG-AT-T-CAGG--C-AACAGAGAT--GA-AATGCTG-CCG--CAGA--CTC--CTTTGCA-TCTCATACAAAGACCG-CA-TCATAtcgtcccgaccaagggataggatag
gi|2 : GAAGTTGAAGCACGCAATCAATTAGCACATGATTAAAGGGAATTCA-CAGGAGTGGATAACTATACCAGGAGAGCTAGTGGCATGCTAGTGCAGGGGAGAGGCCATGATCAACGCCCTGACAACCATCT-CCAAC--AAGATCT--GCAGACAGGAAGAGTTGGCCAACACCATGGACACAATTCACTTGGTGATC-ACCAGCATCCC-CAAGA-AAGGCAAACCTACAGCTGTTTTTGCCAAGAGATCTTACCCCGTGTCGAC--TATTAGGTCCAATAAGTTCACCCCAGTAAAGTCATGTTG--AA-GATCCTGCT-GAACAGACTA-AAACCAC-AGGGCAGAGAAAGATC---TTGCGGAAAAA-GA-AC-A-AGCAG-GTTT-CAGAGCA-GG---------GCG-C-----AGTAC-ACAA--C-AGAACA----GAT---CTTCAA--CCTTCGAA-T---CTGTTGCGAGAGGGTAC-CTCCA-ACACCAACAGAACCCGCATCT--ACC--ATGTCATTTGTGGG-GA----C--TTTAA-GACAGG-CCTTCGAA-CAGAGCTCTGGGC-ATG-GCAGCT-TT-ATGGGC--AACCAT-TGAGGAT-G-AT----------AACATCAACGCCAGATCTT-GATCAA-CAC------CA---T--ACAACAACTATATGAGCAAGGCCT---CCAGCG---C-AGTTTA------CCTCAA-CGGAAGCATAGGGGACTGGCTTCGG--GACAACGGCCG-------G-GGTGTCAGACAAGGGCTGTTTGCTT-TCCTCCAACTCTCCTTCAA-CATC-TTCTTGGAAAA-GAATCATGACTGGACGCCACTAGAAGAGCACAATGTAAACAGTCAAGC-A-------TTGGAGGCAGCAACACCTAACAATTACCATCCTTGCGTTTTGCCGACGACATTGATGCCACTAATCAGG-GGGAAG-AACAAGAGCCTC-GCC-AACTTGT-AGAACGATTGGAC---A-CCTC-AGCAGCGTTACGGCATGGAGATCAGTG-CGAGAAAACCAAGCT-GATGACCAAACAACCACCGAC-GCATCAACACA----GACATCAAAGTCCAGTGGCGAG-AAACTTGAAAACTGTCAAGAGCTTCAAGTACCTTGGGTCAGTCGTATCAG-ATG---AGGATCAAAGCCTTGAAATTCTCTCC
gi|20 : ggaagaagaagaggaaccagaagggtgcaaaaccgtatagggcagttcagccaggaaaatcaaaagagtcaatgaaaggcaaaaagaaaattggattgagagaagtgcctcaagaaatagaaggacaactgtaatgaaaataacagcaaaaaggagcataccaccatagtgaaagaacctagcgttgtccatcgaaacagggcgcaccaaccacctacaggacaaagaagggaagtgcctgacgaggaacagggacattttgaaaacgatggacagagtactgcttcagaactgtacaaccacaaagccacaggaaaaacccagaaagctactgaacgtccctccagacataccaacatcgatgaccactcccatccttcgagaGGAGAG-AACTGGTTTGCCAAGATCAACAGTTTGG-TGGCCCCAACGG
gi|21 : ATGGAGAG-AACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCC-ACGGtcgttcctgaccaaggataggatag
gi|22 : A-GATCTTTTGACCACTGTG-AAGA-GAC-G-GAAATTG-AAGTGGTATGGGC-ATGTCACAAGATCC-tcgtcctcaccaagggataggatag
gi|23 : TACAA-GATTAACA-TCATAAAT-G-C-TGAGG---TACG-GAACAGAGTCACAAA
gi|24 : ACAG--TGG-T-GCCCCAACGG
gi|26 : CAACAG--TGG-T-GCCCCAACGGtcgtcccgaccacgggataggtgatag
gi|27 : G-A-AGGATCAAAGCC-TGAAATTCTCTCCAAG-TTCGCtcgtcccgaccaagggataggat
gi|29 : AAGGGAAGTCAGCAGGAGTGGATAAT-ATAC
gi|3 : GAAGCA-GCAGTCAA--AGCAC-TGAAGAAGGGGAAATCAG---GAGTAAATAAC-ATCCCAAGAGAATTAGTA-CAGGC-AG----GGGGAGAGGCCATGATAAGCGCTCTGACTATCATCT-GCAAC--AAGATCT-GACAGACCAGAGAA--TGACCGACACCATGGACACAA-TCAC-TGGTGATT-AC--AC-TCCC-CAAGA-AA--------------TA----TGTCAGAA----T-ACCAC------AC--CATCA-GCCTGATAAG-TCACCCCAGTAAGGTCATGTTG--AA-GATAGTGCT-GAACAGACTG-AAACCAC-A-GGCAGAG-AGGATC--ATTGCTG---AA-GA-GC-A-GTTAA-GTTT------------------------T-----AG--C-ACAA--C-AGAACA----AAT---CATCAA--CCTCAGGA-TA--CTG-TGCGAGA-GGTAC-CTCCA-ACTCCAGCAAAACC----TCT--ACC--ACGTC-ATCGC--G-GA----T--TTTAA-AA-AAGCCCTTTA-A-TAGGG-TTT-GG------GCG---------------AA--A--TGAGGAC-ATAA----------AACATCAACGCCA-ACC-T-GATCAA-CGT------CA---T--ACAACAACTATATGA-CTGGGCCT---CCAGCG---C-AGTCTA------CCTCAA-TGACAGCATAGGGGACTTG-TTCAG--GACAACGGTCNNNNNNNNN-NNN-NNNNNNNN-NNNNNNNNNNNN-N-NNNNNNNNNN-NNNNNN-NNNN-NNNNNNN-NNN-NNNNNNNNNNNNNN-N-NNNNNNNNNNNNNNNNNG-GAACAGTC-AGT-A-------TTGGAGGCAG--------GACAATCACAA-ATTTGCTTTTTGTCGAT----TTGTCA-GACTAG-CA-G-GAGAAG-AACAGAAA-CTC-GCAAAATTAGT-GGAACAACTGGACACAA-T----------------------AGATCAGTGTCGAGAAAACCAAGAT-GATGAC
gi|4 : aaaaaagaaagaaccagatggtgcaaaagagtacagagcagtctgcaagaaatctaaaaaggtttgaaaagggcaccaaaaaattggattgagaaacaatgccaaggaattgaagacgaacagcagcaaaaaggcataccaactaacgaaggacttgacatgcactaaacaagggcacaccgccaccatcattcaggataaacaaggaaaatgtctgacagaggaacaagacattttgaaacgatggacagaatactgctcaaacaataaagccacaggaaaccctggggtactaaacgtaccccagcaacgaacatcgatgaccaccgaatcattcaa--TTTAA-AA-GA--CTTTCG-A-CAGAG-TCT-G-C-AT--GCAGCT-T--ATG--C--AACCA--TGAGGAT-GTAT----------AACATCAACGCCA-ATC-TTGATCAAGCACC--ATACA---------ACAACTATATTA-CA--GCCT---CCAGCG---CCAGTT-A------CCTCA--CGACA-CATAGGG-ACTGG-TTCGG---ACAACGGTC--------G-GGT--CAGACAA-GGCTGTTTGCTT-T-ATCCAACTCT-CTTCAA-CATC-TCTTGGG-AAA-GAATCATGACTGAC-G-CACTAGAAGAGCACAATG-GAACAATC-AGC-A-------TTGGAGGCAG--------AA-GATTACAA--CTTGCGTTTTGCCGACAGCATTGACG-AGCTAG-CA-GTGGGAAGAAACAAGAG-CTC-GCCAAACTTGT-AGAACGATTGGACACAACCCTCAAACAGCG-TACGGCATGGAGATCAGTGCCGAGAAAACCAAGCT-GATGA-C-AACAA-CACCGACGGCATCAACACA----GACATCCAAGT-CAGTGGCGAGAAAACTT--GAAC-GTACATAGCTTCAAGTACCTTGGGTCAGTCGTATCAGAATG-A-AGCATCAAAGCC-TGAAATTCTCTCCAGGAATCGCGCAAACAAACAGCCGCTCTCGAC-AAACTGAGG-----CC-GTTTGGATTGACAGAAA-ATCACGCTCAGATCAAAGATCAGACTTGATAGCGATCACTGGTCATCTCCATATTCCTGTACGCCATGTGAGTCAT-GACA---ACA-GCA---ATTT-GGAGAGA-AGA-ATCA-CAGG--CAAACTGAAAT--GA--ATAC-A-CCG---AGG--CTC----AGGCA-TCTCCTACAAAA--CA-CA-TC-C-AAT-GTT-TGAGG---TACG-G---AGAGTCACAAAC--CAG---TGGG--GCCT-C-ACAAA-GATCTTTTGACCACTGTG-AAGA-GAC-G-AAA--CG-AAGTGGTAT-GGC-ATGTCACAAGATCC-ACA-G-ACTTGCCAACACAATCCTGACAGAAACCTGTACAAG--AGGAGAAGGAAAGGCA-GC-AGAGAA-AGAG-AT----G-GAGGACAACATCACAGAG-TGGACCGGACAAGAT-A-TGAGC--GACAAC-TTGAGGAGGACAGAGAACAGAAAGGGATGGAAAG-AACTGGTT-GCCAA-ATCAACAG--TGGCT-G-CCCAACGG
gi|5 : CGAG-AAACTTG-GAACTGTCAAGAGCTTCAAGAACCTTGGGTCAGTCGTATCAG-ATG-A-AGGATCAAAGCC-TGAAATTCTCTCCAGG-ATCGCACAAAA-AACAGCCGCCCT-GACAAAACTGAAATGAAACCTGTTTGGAATGATAGAAATATCACGCTCAGATCAAAG--CAGAC-TGAT-GCGATCACTGTTCATCTCCATATTCCTGTACGCC-TGTGAGTCATGGACACTGACA-GCAG--ATTTTGGAGAGA-AGA-AT-A-TAGG--C-AACTGAATT--GA-GATGCTA-CCA--CAGG--CTC--CTAGGCA-TCTCCTACAAAGACCA-CA-TCACAAAT-G-T-TGAGG---TACG-GAACAGAGTCACAAACG-CAG---TGGG---CAT-C-ACAAA-GATCTTTTGACCACTGTT-AAGA-GACGG-AAAACTG-AAGTGGT-TGGGC-ATGTCACAAGATCC-ACAGG-ACTTGCCAAGACAATCCT-ACAAGAAACTGTATAAGGAGGGAGAAGGAGAGGCAGGC-AGAGAA-AGAGAAG----G-GAGGACAACATCACAGGG-TGGACCGGA-ATGAC-ACTGAGC--GACAACTTTGAGGAGGACAGAGAACAGAAAGGAATGGAGAG-AGCTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGGtcgtcccgaccaagggataggata
gi|6 : GAAGTTGAAGCA-GCAATCAA--AGCAC-TGAAAAAAGGGAAGTCAGCAGGAGTGGATAAT-ATACCAGGAGAGCTAGTG-CAGAC-AG----GGGGAGAGGCCATGATCAACGCCCTGACAACCATCT-GCAAC--AATATCC-GGCAGACAGGAGAGG-TGGC--AAACCAT-GACACAA-TCAC-TGGTGATC-AC--GC-TCCCACAAGAGAAGGC-AACATACAGCTG----TGCC-GAA----TTACCGC------AC--TATTA-G-CTAATAAG-TCACCCAAGTAAAGTCATGTTGGAAA-GATC-TGCT-GAACAGACTG-AAAC--C-A-GGCAGAG-AAG-TC--ATTGC-G---AATGA-ACAA-AGCAGAGTTT-CAGAGCAGGG---------GCG-C-----AG--T-ACAAC-C-AGAACA----GAT---CTTCAACTCCTCCAGA-TT--CTG-TGCGAGA-GGTAC-CTCCA-ACACCAAC-AAACC----TATCAGCC--ATGTC-TTTGT--GAGATCGTC--TTGAAGAA-GTG-CCTTCG-ACCAGAG-TCT-GGC-ATAGGCAGCT-TTCATGGGCATAACCATTTGAGGAT-GTAT----------AACATCAACGCCA-ATC-C-GATCAA-CACC--ATACA------ACAACTATAATATGA-CAAGGCCT---CCAGCG---C-AGTTTA------CCtcaccaagggataggatag
gi|7 : actgaacgtccctccagcaaccaacatcgatgaccatcccatccttcgagaaTGTTG--AA-GATC-TGCTTGAACAAGCTG-AAACCACCA-GGCAGAG-AATGTCTAATTGCGGC--AA-GATAC-ATAGCAG-GTTTTCAGAGCA-TGTGTACTGCAGTG-CCAAGAAG--TTACAAGAC-AGCACACAAAGATAACCTTCAA--CCT-AGTA-TATACTG-TGCGAGA-GGTACTCGCTAGACACCA-CACAGTC----TCTG-ACCCTATGTC-TTTGT--G-GA----CAATGTAG-AA-GG--TCTTCG-A-CCAG---TT-GGCCAT--GCAGCTCTT-ATGGGC--A-CCA--TTAGGAGAGTATGCTGACTAGTAACATCAACGCCA-ATC-T-GATCAA-CACC--ATA--------ACAACAACTAT-TGA-CAAGGCCTATTCCAGCGGCAT-AGTTTGAACCACCCTCAATCGGATGCAT--GGGACTGG-TTCGGCGGA-AACGGTC--------G-GGT-CCAGACAA-GGCTGTATGCTT-T-CTCCA-CTCT-CTTCAAACATTATCTTTGG-AAAAGATTCATGACTTGA-G-CACTAGAAGGGCACAATG-GAACAGTC-AGCTATTTAATCTTAGAGGCCA--------GACAATTACCA-CTTTGCGCTTGCCCTA-GACAT
gi|8 : C-TGTGAGTCATGGACACTGACACGCAGTCAATT-GGAGAGATAGATAT-A-CAAGGTCGAACTGAAATATGATGATGCTAACCG--CAGAGTCTCGGCTAGGCAATCTCCT-TAAAATGCA-CAATCACAAATTG-CATGAGG---TACGCGAACAGAATCCAAAACG-CAAGATTGGGTTGCCT-C-ACAAAAGATCTTTAGACCA-TGTGGAAGA-GAC-GGAAAACTGCAAGTGGTATGGGCCATGTCACAAGATCC-ACAGGGACTTGCCAAGACAATCCT-ACAAGGAACTGTACAAGGAGG-AGAAGGAGAGGCAGGCCAGAGAA-AGAG-AT----GAGAGGACGACATCACAGAGGTGGACCGGA-AAGACAGCTGAGCCCGACAAC-TTGAGGAGGACAGAGAACAGAAAGGGAT-GAGAGAAACTGGTT-GCCAAGATCAACAG--TGG-T-GCCCCAACGG
gi|9 : ATAAGCGCTTTGACTATCATCT-ACAAC--AAGATCT-GACA--CAGGA-AAG-TAGCCGACACCATGGACACAA-TCAC-TGGTGATT-AC--AC-TCCC-CAAGA-AAGGC-AACCTACACTTT----TGTCAGAA----TTACCCC------AC--CATCG-GCCTAATAAA-TCACCCCAGTAAGGTTATGTTG--AA-AATAGTGCT-AAACAGGCTG-AAACCAC-A-GGCAGAG-AAGAGT--ATTGCTG---AA-GA-GC-A-GGCAG-GTTT-TAGAGCA-GG---------GTA-C-----AG--C-ACAA--C-AAAACA----GAT---CTTCAA--ACTCATGA-TA--CTG-TGTGAGT-GGTTT-CTCCA-ACACCAGCAAAGCC----TAT--ACC--ACATA-TTCGT--G-GA----T--TTTAA-AA-AAG-CCTTTG-T-CAGGG-TCT-GGC-AC--AAAGCT-TT-ACAGGC--AATTA--TGAtcgtctcgtcccgaccaagggataggatag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): GAACAGGACATTTTGAAGCGATGGACAGAGTACTGCTCAGAACT
Unaligned ( gi|28 ): TGCCCCAACGGTCGTCCCGACCAAGGGATAGGTGA