lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 4444 1 1 1 1 1 666666 11 11 1 666666666666666666666 1 11 555555555555555555555555555 1 22 1 555555555 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 22222222 111 11 33333333 22222 1 4444444444 11 777777777777777777777777777 11111 11 11111111 33333333 1 4444444444444444 1111 1 111111111111 111 1 1 11111111111 3333333333333333333333333333333333333333333333333333333333333333333 33333333333333333333 1 444444444444444444 11 22222
lowQualScore : 3 00 7777 0 0 0 5 0 2 444444 3 33 0 55 3 4 888888888888888888888 2 0 4 44444 55 33 888888888888888888888888888 0 44 0 3 444444444 0 0 7 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 88 8 11 8 44444444 0 8 8 444 11 8 00000000 1 8 8 8 44444 0 1111111111 5 99 222222222222222222222222222 5 33333 5 55 5 99999999 66666666 99 5 6 99 6 7 2222222222222222 6 5 5 7777 5 5 2 5 2222 5 0 66 0 2 5 5 66 000000000000 2 111 888 0 5 11 6 66 4 4 55555555555 5 66 2222222222222222222222222222222222222222222222222222222222222222222 0 44444444444444444444 0 5 9999 55 4 4 222222222222222222 4 7 4 8 00 4 4 66666 1 66 5 55 888
lowQualScore : . .. .... . . . . . . ...... . .. . .. . . ..................... . . . ..... .. .. ........................... . .. . . ......... . . . . ...................................................................................................................... .. . .. . ........ . . . ... .. . ........ . . . . ..... . .......... . .. ........................... . ..... . .. . ........ ........ .. . . .. . . ................ . . . .... . . . . .... . . .. . . . . .. ............ . ... ... . . .. . .. . . ........... . .. ................................................................... . .................... . . .... .. . . .................. . . . . .. . . ..... . .. . .. ...
lowQualScore : 2 22 5555 0 0 0 5 0 5 222222 2 22 8 22 2 5 555555555555555555555 5 0 0 22222 88 88 222222222222222222222222222 0 00 0 2 222222222 2 0 0 2 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 88 0 00 0 22222222 8 0 2 666 00 0 00000000 0 0 0 0 88888 0 9999999999 7 33 999999999999999999999999999 7 66666 7 77 7 99999999 77777777 22 0 7 22 7 2 3333333333333333 7 0 0 4444 0 0 5 0 8888 0 1 99 0 5 0 0 99 222222222222 5 666 888 0 7 44 4 11 4 4 00000000000 0 99 5555555555555555555555555555555555555555555555555555555555555555555 1 00000000000000000000 8 0 4444 66 4 3 999999999999999999 4 0 4 9 77 4 4 00000 4 99 0 99 888
consensus : NNACATTACATATTCATATTCA-CAAA-CTTTCTTT-G-CG-CTTGCAT-GTGACTACATG-A-GTGTA-TCTATTAATTATTATTTCATTA-CTAT---TA----T------TTGTTCTTCATGCT-TTTGNTATTGATTTTGTAGTTTTACTTA--GTT---CAT------TTT-----GA-T--TT-ATTTC-GTT-TTAATGAATA---TN----ATTATTCAT-TAAGCAG---------------T-ACAG-----------ATA---TTG-CAG-CA-A-G-ATAT-----------------------TT------------NT-----------G---TA-----CATGTA-TAC-TCATT--GGAAAT-ATT---C----CTAT-AGTAGTGGCTG--T-GTAANCC---GGCAAT-TCG-TG-CTTGA--AA-GGTCGCNAAATTC-GAAT---TCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-AAGG-GT----AAA---N----AGAG--AA-CTAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-C-AA-CGA-TT-ATGA-T--A-TACCGA-CTTT--GA-CGCG-TG-CTA--GA-T-CTAC-TA-CACCTAAA-ACGT---GA-TTCG-TTTCGCTCCG--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATT-----A-ATT--------------G---------------TT--------------CGC------C-CTTCAGTGCAAAA----T-ATTT--TT------AAGGT-ACG----GCCC-TAGAAACGTGCA-GACCGTTCAATCCACA---TTG-GA------NTACC-TAG-AA-AC-AT-TCAG-ACCGCGCAATACA-TTCCG--CT-ATCGGGT---CTGGAAATGGA
Reference ( gi|4 ) : ACACATTACATATTCATATTCA-CAAT-CGTTCTTT-G-CG-CTTGCAT-GTGACTACATGTACATGTA-TCTATTGATTATCATTTTATTA-TTAT---TA----C------TTGTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTT---CAT------TTT-----GA-T--TT-ATTTCTGTT-TTAATGAATA---CA----ATTATTCAT-TAAGCAG---------------T-ATAG-----------ATA---TTT-CAG-CA-A-G-ATAT-----------------------TT------------GT-----------G---TA-----CATGTA-TAC-TCATT--GGAAAT-ATT---C----CTAT-AGTAGTTGCTG--T-GTAAACT---GGCAAT-TCG-TG-CTTGA--AT-GGTCGCGAAATTC-GAAA---TCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-AAGT-GT----AAA---T----AGAG--AACCTAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-C-AA-CGA-TT-ATGA-T--A-TACCGA-CTTT--GA-CGCG-TG-CTA--GA-T-CTAC-TA-CACCTAAA-ACGT---GA-TTCG-TTTCGCACCG--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATT-----A-ATT--------------G---------------TT--------------CGC------C-CTTCAGTGCAAAA----T-A-----TT------AAGGT-ACG----GCCC-TAGAAACGTGCA-GACTATTCAATCCACA---TTG-GA------GTACC-TGG-AA-AC-AT-TCAG-ACCGTGCAATGTA-TTCCG--CT-ATCGGGT---CTGGAAATGGA
gi|2 : ACATTACATATTCATA------AA--CTTTCTTTTG-CG-CTTGCATCGTGACTACATG-----G-A-TCTATTAATTAT-ATTTTATTA-CTACATGTAATATT------TTGTTCTTCATGAT-TTTGTTATTGATTTTGTAGTTTTACTTA--GTT---CATTTTCAGTTT-----GATT--TT-ATTTCTGTT-TTAATGAATA---TAAGGTATTATTTAA-T-ACCAG---------------T-ACGGGGGAAAAAACAATT---TTTGCAG-CA-A-G-ATATTTTTTTCCACACATATTGCTGCATT------------GT-----------A---TACTGTACATGTA-TACTTCATT--GGAAAT-ATT---C----CTAT-AGTAGTGGCTG--T-GTAATCC---GG------CG-TGTTTTGA--AA-GGTCGCCAAATT-----------AAA-ACTAT--ACA----------------------T-----A-TACTCAC-C-G-T-GTTA--TA-AAGG-GTTTAAAAA---TTTTAAGAG--AA-CTAATT-T--TT-CAGTATTGTACTTTTA--AA-A-T-AA--CTGA-TTAT-GA-------------T-AT--------TACCGC-TTTT--GA-TGCG-TG-CTA--GG-----A---------TAAA---GT---GATTTCGTTTTCGCTCCT--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATT-----C-ATT--------------GTTTAAACCAAACCATTT--------------CGC------C-CTTCAGTGCAAAA----C-ATTTTTTT------AA-GT-ACG----GCCC-TAGAAACGTGCAGGACTGTTCAATCCACA---TCGTGA------TAACCGTAG-AA-AC-AT-TCAGAACCGCGCAATACA-TT-CG--CT-ATCGGGT---C-GGAAATGGA
gi|1 : ATTACATATTCATATTCA-CAAAACTTTCTTT-G-CG-CT-GCAT-GTGACTACA-----ATGTAATCTATTAAT-ATTATTTCATTAACTAT---TA----CATGTATTTGTTCTTCATGCTGTTTGATATTGATTTTGTAGTTTTACTTA--GTT---TAT------CTT-----CAGT--TTGATTT--ATT-TTAATGACTA---TAT---ATTATCCAT-TAAGCAG---------------T-ACAA-----------ATA---TTG-CAG-CC-A-G-ATAT-----------------------TTTTTCCACAACATAT-----------G---TA-----CATGAA-TAC-TCATT--GGAAAT-AGT---C----CTAT-AGTAGTGGCTG--T-GT-AACC---GACATT-TCG-TG-CTTGA--AA-TGTCGT-AAATTC-AAAT---TCAGA-ACTTT--ACAT-----A-TGTACAGTGTA-C-T-----A-TA-TCAC-C-G-T-GTTA--TA-AAGG-GT----AAA---T----gctaggaaaggtgtagaattcaaaaaaaaatattttagaattaaaaaacttttgcagataattt
gi|3 : acataaTTACATAAATATGTTCA-TAAA-CTTTCTTG-G-CGTCTTGCAG-TTGACTACATGTA--TGTA----GT--ATTATTGCTTTATTA-ATTT---TA-----------TTGTTCTTAATGCT-TTTGTTACTTGTTTTGT-GTTTTACATA--GTTGTTCAG------TTT-----GT-A--TT-ATTTC-GTT-T-AATGAATA---TT----ATTATTCAT-TGGGGGGGGGGGGAGGGGGCTCC-ACAG-----------TTAAGCTTG-CAG-CA-ACGTATGT-----------------------TT------------TTCCTCACATATTG---TA-----CATGT----T-TCATT--GGAAATGATT---C----CTATGAATA-TGGCTGATT-GT-ATCT---GGCAATATCGTTG-TTTAA--ACAGGTTGCCAAAT----------TCAAA-ACTTTC-AGAT-----A-TGTA---CTTAGC-T-----A-T-CTCAC-CAG-T-GTTA--TATATATGGT----AAA---GA---AGAG--AA-CTAATT-T--TT-CAGTATTGT-CT------------------TGAGTTAC-TAAT-CAAA-CGATTT-ATGA-T--A-TA--GA-CTTT--GA-CGCGTTG-CTA--GA-T-TTAT-TA-CACCTAAATAAGT----A-TT-G-TTT-GCCTCGGTTGCAGA-CGT-TTTTCGATTAG-------ATG--AA-CCCAATC-----ACATTC-------------G---------------TTTAAACAACAGTATACGC------CTCTTCAGTGCAAAA----T-ATTT--TT------AA-GT-ACG----G-TC-TAG-AAC---TC-GACTGTTCAAT-CACA----TG-GC------ATA-C-TAG-AATAT--T-TCAG-AACGCGCAATACACTTCCG--CTAATC-GGT---CTGAAAATGttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|5 : CATATTCATCAAC---TTTTTT-GACG-CT-GCAT-GTGACTA-----A-GTGTA-TCCATCAATTAATATTTCATTA-CAAT---TA----T------TT--TCTTCATGCT-TTTGAT-------TTGTA-TTTTACTCAAAGT----CAT------TTTCAGTTGA-TATCT-ATTTC-GTTATTAATGAATAATTCC----ATTATTAATCTAAACAG---------------TCACAGC----------ATA---TTG-CAGACA-A-G-ATAT-----------------------TT------------TT-----------GGCACA-----CACGTACTGC-ACATA--CATAAT-GTTATAC----CT-C-ACTAGACAATA--T-CTAGAGTATCGGCAAT-TCG-TA-CTTGATAAA-GGTCGCGAAATTCAGAAACCTTCACA-ACTTT--ACAC--TACA---------------------G-TACTCAC-C---T-GTTA--TC-AAG--GT----AAA--------ACAG--AACCTAATT-TCTTT-CAGCATTGTACTTTAA--CA-ACTAAA--CTGA-TTAT-GAAT-C-TA-CCA-TTCATGA-T--ATTACCGA-CTTT--GACCGCG-TGCCTA--GATT-CTAC-TA--A-CTAAA-A-GT---GACTTCG-TTTC-CTTCG--TGCAAACAGTATTTTTG-TTCA-------Aaggaggaaaatgggcttagaattcaaaagaaagtatatttagcattatagacttttgcataaataacttg
gi|15 : aatactaa---TTC-TAA-CACA-A-ATAC-----------------------TT------------GT----------------A-----AATATA-TAC-TCACTTAAGAAAT-ATT---TTTCACTAT-A-TA-TTCCTA--TAGTAT-CC---GGCAAT-TCG-TA-CTTAA--AA-GGTCGCGAAATTC-AAAT---TCAAGCATTTTTAACAT--T-C
gi|11 : AAT---TCAGA-ACTTTG-ACATAAT-TAGTGTA------ACC-TTTATAA-TACACACGC-T-TAGCTAAATA-GGGT--T----AAAACAT----AGAGTGAAACTAATT-T--TTTCAGTGCTGTCCTTTTATAAA-A-TAAATACTGA-TTATTGAAT-C-AA-CGA-TT-ATGA-TTAA-TACCGA-C-----GA-CGAG-TG-CT---GA-TCCTAC-TATCACTAAAA-ACGT---GA-TTC
gi|12 : AA-ACTT---ACAT--A-CA-T-TA---TGTACTAT-----AATACCCACAC-GCT-AATAAGCA-AAGG-GC----AAA---A----AGAG--AAACAAATTCT--TT-CAGTGT-GTCCTTTTA--AAGA-TAAA--CTGA-TTAT-GAATTC-AAGCGA-TT-ATGA-T--ACTACCGATCTTTCTGATCGAG-TG-CTA--GA-T-CTAC-TA-CACCTAAA-ACGT---GA-TTCG-CTT
gi|7 : attcT--T-TA-CATA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-AATG-GT----AAA---A----AGAG--AACATAATT-T--TT-CAGTATTGTACTT------------------GA-TTAT-GAAT-C-AA-CGA-TT-ATGA-T--A-TACCGA-CTTT--GA-CGCG-TG-CTA--GA-T-TTAT-TA-CACCTAAA-AAGT---GA-TTTG-TTTCGCTCCG--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATC-----C-ATTGTTTAAACCAAACCG---------------TT--------------CGC------C-CTTCAGTGCAAAA----T-ATTT--TT------AA-GT-ACG----GTCC-TAGAAACGTGCA-GACTGTTCAATCCACA---TTG-CA------TTACC-TAG-AA-AA-CT-TCAG-ACCGCGCAATACA-TTCCG--CT-ATCGGGT---CTGGAAATGGA
gi|1 : AT-GAAT-C-A--CGC-TT-ATGAGT--A-TACCGA-CTTT--GA-CGAG-TG-CTAGTGA-T-ATACATA-CACCAAAA-ACGA---GA-TTCG-ATTCGCTCCgaaaatggcttagaattcaaaagaaatattttagcattatagacttttgcaaataatttgaacaaaataatga
gi|8 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaAT-GAAA-C-AA-CTC-TC-AT-A-T--G-TACGCA-CT----GA-C----TG-CCA--GA-C-CT---------CCAAG-GTGTTCTGA-TTCG-TT-----CCA--TGCAAATCAT-CCTCCG-TTCC-------GTTTAATTCC--ACTCA---A-ACT--------------G---------------TT--------------CAT------CGCTCCATATCAAAACGCTT-A-----TTCTTTATAAGATCAAGCCATGCTCGTACAAACGTGCA-AACAATTCAAGCCAC----------------GCCCC-TAGCAA-AC--T-GCAG-ACGGTGCAA---------G--CC-ATT---T---CTGGAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|1 : TTCGCTCCG--TGCAGACCGT-TTTTCG-TTCA-------ATACAAA-CC--ATT-----C-ATT--------------G---------------TTTAAACCAAACCGTTCGC------C-CTTCAGTGCAAAA----T-A-----TT------A-GGT-ATG----ACC--TAGAAACGTGCA-TACTGTTCAATCCACA---TTG-GATTACATGTACC-TAG-AA-AC-AT-TCAG-ACCGTGCAATACA-TACCG--CT-ATCGGGC---CTGGAAATGaagatgggcattggtggggaatttcagcatttaaaaaaaaagataaatgaaatgaaataataaaaaatataatgataaatgattaaagaaaaaaatatcaaa
gi|10 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgaCCG--TGCAGACCGT-TTTTCG-TTCATCGTTTAATCGAAA-CC--GTTCACGAA-ACC--------------G---------------TT--------------CGT------T-CTTCAGTGCAAAA----T-A-----TA------AAGGT-ACG----ACCC-TAGAAACGTGCA-GGCTGTTCAATCCACC---TC-------------CC-TAG-AA-AC-AT-TCAG-ACCGTGCATTACT-TTCCG--CT-ATCGGGT---CTGGAATTGGAaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|6 : CTG--TGCAGATCGC-ACAGCG-CTCC-------GAGCAAA-CC--GTT--------TC--------------G-------------------------------CGCAAGAATC-GTTCCGTACA-------TGA-----TC------AAACC-ACG----CCCA-TAGAAAAGTGCA-CACTGTTCAAACCACACCCTTA-TA--------ACC-TTA-AAGACTATGTTAA-AC-GTGCAAGGCA-TTTCAGTCT-AT---AT---CTGGAAggaattcaaaggaaatattctagaattac
gi|13 : gttccgtgtagaccgtgcatatcgcacaacgttccgtgtagaccgtacagcgttG--TGCGAACCGT-TT--CG-TGCA-------A---GAA-TC--ATT-----A---T--------------G---------------TA--------------CAC---------------G-----------A-----TT------AAGCC-ACA----TCCA-TCGAAACGTGCA-GACCGTTTAAcaggtggacgattttgagaaatcgagcaattatttcaatatctctcaaaggtagactttcaacagtgaaaatctgcaaataattgaaacaaaatacagtaattaaaagttttaaaaccaccagacagaacaaaattcgatacaatcgtagccctcatagaaatttcaacacccttgatagtctccaaagacaatttttttccattaaatatattttcatcaaaattgttta
gi|17 : CG----GCCC-TAGAAACGTGCA-GACCGTGCAGTCCACA---TTG-GA------TTACC-TAG-AA-AC-AT-TCAG-Aaacataccctaaaattattgaaccgtgtcagtcatttagtatgcaataggtggacatttttggaaattttggtaattaatatcaaaatgttgactttcaacattgaaa
gi|17 : CC-TAG-AA-AC-GT-GCAG-ACCGTGCAG------TCCA--C--ATTGGATTACCTAGAAA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AAAACGTTTCATTTCATTGCGTTCAGACTGCTCAGCGTTTTGTCCAAATCATTCAGATTCCGTTCGTGTGCAAATAATTGTGTGCAGGAGTCGTTCCATGCAAGATAAAATCAAATCATAAAGCATACAACATTTTCATGTCATTCCATACAAACTTGTAGACCGTGCAGACTACTATACCATAGCGAAATGGGACAATGGAAATTCAAACATTTTAAAATCTCTCTAATATAGGCTTTCAGTATTAAAACCCCTGCAGATAATTTGAA
Unaligned ( gi|14 ): ATTACACCATTAAAACTTGCAGACTGTACGAAACATACAAGCATTCCACTAAGGGATTTGGAAAAGGTGGACGTTCATGAAAATTGAGTAATTATTTCAAAATTCACAAAGATGGACTTAACAGTGAATATCTGGCAAATAACCTTGAA
Unaligned ( gi|16 ): AAACCGTTCAGAGTTCTGTACAGACCAACAACATTCAGTATTCCGTACAGGCCGTTCGGTGTTCCGTGAAAACCGTTCAGCATTCTGTGCAGATCGTTCAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111
lowQualScore : 1 4444444 111 444444 222 222222 33333333333 1 3333333333 777777777777777777777777777777777777 0000000000000000000000000000000000000000000000000000000000000000000000 11111111 1111 11 111 11 444444444444444444444444444 1 2222222 111 111 2222222222222222 1111 1111111 2222222222222222222222222222222222222222222 1 1111 1111111111 2222222222222222
lowQualScore : 3 1 8 8 0 8 0 8 2222222 8 0 0 6 8 444 000000 0 8 1 0 0 555 0 333333 44444444444 6 0 8 7777777777 8 3 222222222222222222222222222222222222 8 6 6 1111111111111111111111111111111111111111111111111111111111111111111111 99 6 88888888 6 6 6 77 5 33 6 1111 77 6 6 6 99 6 1 222 888 5 66 888888888888888888888888888 5 0 999 5 66 5 5 66 888 5 5555555 000 222 5 77 5 4 3333333333333333 5 4 4 4444 4 4 1 4 0000 4 66 8 1 4 4 66 777 66 55 2 777 8 5 66 5 5 6666666 3 5 77 2222222222222222222222222222222222222222222 1 2222 7777777777 33 5 9999 4 4 3 0000000000000000 4 4 4 4 5 2 5 6
lowQualScore : . . . . . . . . ....... . . . . . ... ...... . . . . . ... . ...... ........... . . . .......... . . .................................... . . . ...................................................................... .. . ........ . . . .. . .. . .... .. . . . .. . . ... ... . .. ........................... . . ... . .. . . .. ... . ....... ... ... . .. . . ................ . . . .... . . . . .... . .. . . . . .. ... .. .. . ... . . .. . . ....... . . .. ........................................... . .... .......... .. . .... . . . ................ . . . . . . . .
lowQualScore : 8 4 0 0 6 0 6 0 2222222 0 8 8 0 0 000 000000 8 0 0 8 8 000 8 000000 44444444444 0 8 0 0000000000 0 8 666666666666666666666666666666666666 0 7 7 3333333333333333333333333333333333333333333333333333333333333333333333 22 7 55555555 7 7 7 77 2 55 7 2222 22 7 7 7 22 7 0 888 888 0 99 000000000000000000000000000 0 0 444 0 99 0 0 99 888 0 9999999 000 999 7 99 7 9 4444444444444444 7 4 4 6666 4 4 1 4 3333 4 11 9 1 4 4 11 000 33 66 2 666 9 0 99 0 0 2222222 0 7 99 7777777777777777777777777777777777777777777 4 1111 3333333333 99 0 4444 4 4 4 8888888888888888 4 4 4 4 0 0 0 7
consensus : NNACATTACATATTCATATTCACAAA-CTTTC-TTTGCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT---TA------TTTGTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA---GTTCAT------TTT-----GA-T--TTATTTCTGTT-TTAATGAATA---T----N-ATTATTCAT-TAAGCAG---------------T-ACAG--------ATAA---TTGCAG-CAA-G-ATATTT-----------TT------------G---T--ACA-------------TGTA-TAC--------------TCATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCG-TG-CTTGA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGG--T---AA-A------AAGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-C-AA-CGA-TT-ATGA-T--A-TACCGA-CTTT--GA-CGCG-TG-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TTCG-TTTCGCTCCG--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATT-----A-ATT-G---------------TTTAAAC-A-A---T-CGCC-CTTCAGTGCAAAA----TA--TTTTT---AAGGT-ACG----GCCC-TAGAAACGTGCA-GACTGTTCAATCCACATCG-GATTAC------C-TAG-AAACA-TTCAG-ACCGCG-CAATACA-TTCCGCT-ATCGGGTCTGGAAATGGA
Reference ( family-3831 ) : NNACATTACATATTCATATTCACAAA-CTTTC-TTTGCG-CTTGCAT-GTGACTACATG-A-GTGTA-TCTATTAATTATTATTTCATTA-CTAT---TA------TTTGTTCTTCATGCT-TTTGNTATTGATTTTGTAGTTTTACTTA---GTTCAT------TTT-----GA-T--TTATTTC-GTT-TTAATGAATA---T----N-ATTATTCAT-TAAGCAG---------------T-ACAG--------ATA----TTGCAG-CAA-G-ATATTT-----------NT------------G---T--ACA-------------TGTA-TAC--------------TCATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAANCCGGCAAT-TCG-TG-CTTGA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGG--T---AA-A------NAGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-C-AA-CGA-TT-ATGA-T--A-TACCGA-CTTT--GA-CGCG-TG-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TTCG-TTTCGCTCCG--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATT-----A-ATT-G---------------TT--------------CGCC-CTTCAGTGCAAAA----TA--TTTTT---AAGGT-ACG----GCCC-TAGAAACGTGCA-GACCGTTCAATCCACATTG-GANTAC------C-TAG-AAACA-TTCAG-ACCGCG-CAATACA-TTCCGCT-ATCGGGTCTGGAAATGGA
gi|1 : ATTACATATTCATATTCACAAAACTTTC-TTTGCG-CT-GCAT-GTGACTACA-----ATGTAATCTATTAAT-ATTATTTCATTAACTAT---TACATGTATTTGTTCTTCATGCTGTTTGATATTGATTTTGTAGTTTTACTTA---GTTTAT------CTT-----CAGT--TTGATTT-ATT-TTAATGACTA---T----ATATTATCCAT-TAAGCAG---------------T-ACAA--------ATA----TTGCAG-CCA-G-ATATTT-----------TTTCCACAACATATG---T--ACA-------------TGAA-TAC--------------TCATT--GGAAAT-AGT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAA-CCGACATT-TCG-TG-CTTGA--A-ATGTCG-TAAATTC-AAA---TTCAGA-ACTTT--ACAT-----A-TGTACAGTGTA-C-T-----A-TA-TCAC-C-G-T-GTTA--TA-A-AGGG--T---AA-A------
gi|1 : acataaAT-GAAT-C-A--CGC-TT-ATGAGT--A-TACCGA-CTTT--GA-CGAG-TG-CTAGTGA-T-ATACATA-CACCAAAA-ACGAGA-TTCG-ATTCGCTCCtttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|1 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaTTCGCTCCG--TGCAGACCGT-TTTTCG-TTCA-------ATACAAA-CC--ATT-----C-ATT-G---------------TTTAAACCAAACCGTTCGCC-CTTCAGTGCAAAA----TA--TT-------AGGT-ATG----ACC--TAGAAACGTGCA-TACTGTTCAATCCACATTG-GATTACATGTACC-TAG-AAACA-TTCAG-ACCGTG-CAATACA-TACCGCT-ATCGGGCCTGGAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|10 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgaCCG--TGCAGACCGT-TTTTCG-TTCATCGTTTAATCGAAA-CC--GTTCACGAA-ACC-G---------------TT--------------CGTT-CTTCAGTGCAAAA----TA--TA------AAGGT-ACG----ACCC-TAGAAACGTGCA-GGCTGTTCAATCCAC-------CTCC------C-TAG-AAACA-TTCAG-ACCGTG-CATTACT-TTCCGCT-ATCGGGTCTGGAATTGGAaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|11 : AA---TTCAGA-ACTTTG-ACATAAT-TAGTGTA------ACC-TTTATAA-TACACACGC-T-TAGCTA--AA-T-AGGG--TTAAAACA------TAGAGTGAAA-C-TAATT-T--TTTCAGTGCTGTCCTTTTATAAA-A-TAAATACTGA-TTATTGAAT-C-AA-CGA-TT-ATGA-TTAA-TACCGA-C-----GA-CGAG-TG-CT-G--A-TCCTAC-TATCACTAAAA-ACGTGA-TTCggaattcaaaggaaatattctagaattac
gi|12 : A---TTCAAA---CTT--ACAT--A-CA-T-TA---TGTACTAT-----AATACCCACAC-GCT-AATAAGCA-A-AGGG--C---AA-A------AAGAG---AAAC-AAATTCT--TT-CAGTGT-GTCCTTTTA--AAGA-TAAA--CTGA-TTAT-GAATTC-AAGCGA-TT-ATGA-T--ACTACCGATCTTTCTGATCGAG-TG-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TTCG-CTT
gi|13 : TT---AAGCC-ACA----TCCA-TCGAAACGTGCA-GACCGTTTAA--AACAT----AC--C------C-TAA-AATTA-TTGA--ACCGTGTCAGT-CA-TT
gi|15 : gtgcgaaccgtttcgtgcaagaatcattatgtacacgaA-A-ATACTT-------------------------G---T--AAA-------------TATA-TAC--------------TCACTTAAGAAAT-ATT---TTTCACT-A-T-A--TATTC-CT-A--TAGTA-TCCGGCAAT-TCG-TA-CTTAA--A-AGGTCGCGAAATTC-AAA---TTCAAGCATTTTTAACAT--T-Ctagtatgcaataggtggacatttttggaaattttggtaattaatatcaaaatgttgactttcaacattgaaa
gi|17 : ttctaacacCG----GCCC-TAGAAACGTGCA-GACCGTGCAGTCCACATTG-GATTAC------C-TAG-AAACA-TTCAG-A
gi|2 : ACATTACATATTCAT------AAA-CTTTCTTTTGCG-CTTGCATCGTGACTACATG-G-----A-TCTATTAATTA-TATTTTATTA-CTACATGTAATAT--TTTGTTCTTCATGAT-TTTGTTATTGATTTTGTAGTTTTACTTA---GTTCATTTTCAGTTT-----GATT--TTATTTCTGTT-TTAATGAATA---TAAGGT-ATTATTTAA-T-ACCAG---------------T-ACGGGGGAAAAAACAATTTTTGCAG-CAA-G-ATATTT-----------TT------------T---TCCACACATATTGCTGCATTGTA-TACTGTACATGTATACTTCATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGG------CG-TGTTTTGA--A-AGGTCGCCAAATT-----------AAA-ACTAT--ACA----------------------T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGTTT---AA-AAATTTTAAGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-T-AA--CTGA-TTAT-GA-------------T-AT--------TACCGC-TTTT--GA-TGCG-TG-CTAG--G-----A---------TAAA---GTGATTTCGTTTTCGCTCCT--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATT-----C-ATT-GTTTAAACCAAACCATTT--------------CGCC-CTTCAGTGCAAAA----CATTTTTTT---AA-GT-ACG----GCCC-TAGAAACGTGCAGGACTGTTCAATCCACATCGTGATAAC------CGTAG-AAACA-TTCAGAACCGCG-CAATACA-TT-CGCT-ATCGGGTC-GGAAATGGA
gi|3 : TTACATAAATATGTTCATAAA-CTTTC-TTGGCGTCTTGCAG-TTGACTACATG------TA-TGTAGTA-TTATTGCTTTATTA-ATTT---TA------TT-GTTCTTAATGCT-TTTGTTACTTGTTTTGT-GTTTTACATAGTTGTTCAG------TTT-----GT-A--TTATTTC-G-T-TTAATGAATA---T----T-ATTATTCAT-TGGGGGGGGGGGGAGGGGGCTCC-ACAG--------TTAAGC-TTGCAG-CAACGTATGTTTTTCCTCACATATT------------G---T--ACA-------------TGT----T--------------TCATT--GGAAATGATT---C----CT-A-TGAA-TA-TGGCT-GATT-GT-ATCTGGCAATATCGTTG-TTTAA--ACAGGTTGCCA-------AA---TTCAAA-ACTTTC-AGAT-----A-TGTA---CTTAGC-T-----A-T-CTCAC-CAG-T-GTTA--TATATATGG--T---AA-AG-----AAGAG---AA-C-TAATT-T--TT-CAGTATTGT-CT------------------TGAGTTAC-TAAT-CAAA-CGATTT-ATGA-T--A-TA--GA-CTTT--GA-CGCGTTG-CTAG--A-T-TTAT-TA-CACCTAAATAAGT-A-TT-G-TTT-GCCTCGGTTGCAGA-CGT-TTTTCGATTAG-------ATG--AA-CCCAATC-----ACATTCG---------------TTTAAACAACAGTATACGCCTCTTCAGTGCAAAA----TA--TTTTT---AA-GT-ACG----G-TC-TAG-AAC---TC-GACTGTTCAAT-CACA-TG-GCATA-------C-TAG--AATATTTCAG-AACGCG-CAATACACTTCCGCTAATC-GGTCTGAAAATGgctaggaaaggtgtagaattcaaaaaaaaatattttagaattaaaaaacttttgcagataattt
gi|4 : ACATTACATATTCATATTCACAAT-CGTTC-TTTGCG-CTTGCAT-GTGACTACATGTACATGTA-TCTATTGATTATCATTTTATTA-TTAT---TA------CTTGTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA---GTTCAT------TTT-----GA-T--TTATTTCTGTT-TTAATGAATA---C----A-ATTATTCAT-TAAGCAG---------------T-ATAG--------ATA----TTTCAG-CAA-G-ATATTT-----------GT------------G---T--ACA-------------TGTA-TAC--------------TCATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTTGCT-G--T-GTAAACTGGCAAT-TCG-TG-CTTGA--A-TGGTCGCGAAATTC-GAA---ATCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGTG--T---AA-A------TAGAG---AACC-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-C-AA-CGA-TT-ATGA-T--A-TACCGA-CTTT--GA-CGCG-TG-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TTCG-TTTCGCACCG--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATT-----A-ATT-G---------------TT--------------CGCC-CTTCAGTGCAAAA----TA-----TT---AAGGT-ACG----GCCC-TAGAAACGTGCA-GACTATTCAATCCACATTG-GAGTAC------C-TGG-AAACA-TTCAG-ACCGTG-CAATGTA-TTCCGCT-ATCGGGTCTGGAAATGGAaggaggaaaatgggcttagaattcaaaagaaagtatatttagcattatagacttttgcataaataacttg
gi|5 : acCATATTCATCAA-CTTTT-TTGACG-CT-GCAT-GTGACTA-----A-GTGTA-TCCATCAATTAATATTTCATTA-CAAT---TA------TTT--TCTTCATGCT-TTTGAT-------TTGTA-TTTTACTCAAA-GT-CAT------TTTCAGTTGA-TATCTATTTC-GTTATTAATGAATAATTC----C-ATTATTAATCTAAACAG---------------TCACAGC-------ATA----TTGCAGACAA-G-ATATTT-----------TT------------GGCAC--ACA-------------CGTACTGC--------------ACATA--CATAAT-GTTATAC----CTCACT-AGACAATATCTAG--A-GTA--TCGGCAAT-TCG-TA-CTTGATAA-AGGTCGCGAAATTCAGAAACCTTCACA-ACTTT--ACAC--TACA---------------------G-TACTCAC-C---T-GTTA--TC-A-AGG---T---AA-A-------ACAG---AA-CCTAATT-TCTTT-CAGCATTGTACTTTAA--CA-ACTAAA--CTGA-TTAT-GAAT-C-TA-CCA-TTCATGA-T--ATTACCGA-CTTT--GACCGCG-TGCCTAG--ATT-CTAC-TA--A-CTAAA-A-GTGACTTCG-TTTC-CTTCG--TGCAAACAGTATTTTTG-TTCA-------A
gi|7 : aatactaaT--T-TA-CATA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-ATGG--T---AA-A------AAGAG---AA-CATAATT-T--TT-CAGTATTGTACTT------------------GA-TTAT-GAAT-C-AA-CGA-TT-ATGA-T--A-TACCGA-CTTT--GA-CGCG-TG-CTAG--A-T-TTAT-TA-CACCTAAA-AAGTGA-TTTG-TTTCGCTCCG--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATC-----C-ATT-G---------------TTTAAACCAAACCGTTCGCC-CTTCAGTGCAAAA----TA--TTTTT---AAG-T-ACG----GTCC-TAGAAACGTGCA-GACTGTTCAATCCACATTG-CATTAC------C-TAG-AAAAC-TTCAG-ACCGCG-CAATACA-TTCCGCT-ATCGGGTCTGGAAATGGA
gi|8 : AT-GAAA-C-AA-CTC-TC-AT-A-T--G-TACGCA-CT----GA-C----TG-CCAG--A-C-CT--------CC---A-AGGTGT-TCTG-ATTCGTTCCA--TGCAAATCAT-CCTCCG-TTCC-------GTTTAATTCC--ACTCA---A-ACT-G---------------TT--------------CATCGCTCCATATCAAAACGCTTA--TTCTTTATAAGATCAAGCCATGCTCGTACAAACGTGCA-AACAATTCAAGCCACGCC-------C------C-TAGCAAAC--TGCAG-ACGGTG-CAAGCCA-TTTCgaaaatggcttagaattcaaaagaaatattttagcattatagacttttgcaaataatttgaacaaaataatga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GTTCCGTGTAGACCGTGCATATCGCACAACGTTCCGTGTAGACCGTACAGCGTTCTGTGCAGATCGCACAGCGCTCCGAGCAAACCGTTTCGCGCAAGAATCGTTCCGTACATGATCAAACCACGCCCATAGAAAAGTGCACACTGTTCAAACCACACCCTTATAACCTTAAAGACTATGTTAAACGTGCAAGGCATTTCAGTCTATATCTGGAACAGGTGGACGATTTTGAGAAATCGAGCAATTATTTCAATATCTCTCAAAGGTAGACTTTCAACAGTGAAAATCTGCAAATAATTGAAACAAAATACAGTAATTAAAAGTTTTAAAACCACCAGACAGAACAAAATTCGATACAATCGTAGCCCTCATAGAAATTTCAACACCCTTGATAGTCTCCAAAGACAATTTTTTTCCATTAAATATATTTTCATCAAAATTGTTTA
Unaligned ( gi|9 ): AAAACGTTTCATTTCATTGCGTTCAGACTGCTCAGCGTTTTGTCCAAATCATTCAGATTCCGTTCGTGTGCAAATAATTGTGTGCAGGAGTCGTTCCATGCAAGATAAAATCAAATCATAAAGCATACAACATTTTCATGTCATTCCATACAAACTTGTAGACCGTGCAGACTACTATACCATAGCGAAATGGGACAATGGAAATTCAAACATTTTAAAATCTCTCTAATATAGGCTTTCAGTATTAAAACCCCTGCAGATAATTTGAA
Unaligned ( gi|14 ): ATTACACCATTAAAACTTGCAGACTGTACGAAACATACAAGCATTCCACTAAGGGATTTGGAAAAGGTGGACGTTCATGAAAATTGAGTAATTATTTCAAAATTCACAAAGATGGACTTAACAGTGAATATCTGGCAAATAACCTTGAA
Unaligned ( gi|16 ): AAACCGTTCAGAGTTCTGTACAGACCAACAACATTCAGTATTCCGTACAGGCCGTTCGGTGTTCCGTGAAAACCGTTCAGCATTCTGTGCAGATCGTTCAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222 11 22222222222222 11 1111 555555555555555 1 22222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111 1111 22 11111111 11 555555555555555555555555555 1 1111 22222222 111 1 2222222222222222 1111 1111111 2222 66666666666666666 2222222222222222 3333333333333
lowQualScore : 0 22 8 88 8 0 8 55555 33 3 0 3 8 88888888888888 88 8 1 0 0 11 4444 000000000000000 5 8 0 88888888888 8 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 6 99 6 88888888 6 6 6 77 5 33 6 1111 33 6 6 6 99 6 1 88888888 5 66 333333333333333333333333333 5 0 999 5 66 5 5 5555 00000000 000 5 7 5 77 5 4 7777777777777777 5 4 4 8 8 1 4 0000 4 66 8 1 4 4 66 777 4 55 1 2 777 4 4 4 66 4 4 4444444 1 5 66 1111 5 33 0 88888888888888888 5 3333333333333333 8 4 8888 1 4 4 0 4 5555555555555 8 4 666 4 4 0 4 2 4 0 77 5 0
lowQualScore : . .. . .. . . . ..... .. . . . . .............. .. . . . . .. .... ............... . . . ........... . . ...................................................................................................... . . .. . ........ . . . .. . .. . .... .. . . . .. . . ........ . .. ........................... . . ... . .. . . .... ........ ... . . . .. . . ................ . . . . . . . .... . .. . . . . .. ... . .. . . ... . . . .. . . ....... . . .. .... . .. . ................. . ................ . . .... . . . . . ............. . . ... . . . . . . . .. . .
lowQualScore : 8 00 0 66 0 6 0 66666 66 8 8 8 0 00000000000000 88 0 4 8 8 00 8888 444444444444444 4 0 8 00000000000 0 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 7 22 7 55555555 7 7 7 77 2 55 7 2222 00 7 7 7 22 7 0 44444444 0 99 888888888888888888888888888 0 0 444 0 99 0 0 6666 33333333 000 7 1 7 99 7 9 0000000000000000 7 4 4 9 9 1 4 3333 4 11 9 1 4 4 11 000 4 66 1 2 666 4 4 0 11 4 4 4444444 4 0 99 0000 0 99 1 00000000000000000 0 8888888888888888 4 4 5555 6 0 0 9 0 7777777777777 0 0 333 0 0 7 4 4 4 2 99 7 7
consensus : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTT---CATTTTCAGTT-GA-T--TT-ATTTCTGTT-TTAATGAATA---TA-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATT--C-ATT-GTTTAAACCAAACC-T-T------CGCC-CTTCAGTGCAAAA----TA--TTTTT---AAGGT-ACG----GCCC-TAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
Reference ( family-3831 ) : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTT---CATTTT------GA-T--TT-ATTTCTGTT-TTAATGAATA---TN-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATT--A-ATT-GTTTAAA-CAA------T------CGCC-CTTCAGTGCAAAA----TA--TTTTT---AAGGT-ACG----GCCC-TAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
gi|1 : ATTACATATTCATATTCACAAAACTTTCTTT-GCG-CT-GCAT-GTGACTACA-----ATGTAATCTATTAAT-ATTATTTCATTAACTAT------TACATGTATTT-GTTCTTCATGCTGTTTGATATTGATTTTGTAGTTTTACTTA--GTT---TATCTT------CAGT--TTGATTT--ATT-TTAATGACTA---TATA----TTATCCAT-TAAGCAG---------------T-ACAA--------ATA---TT---GCAG-CCA-G----------------ATATT------TT------TTCCACAACATATG---TACATGAA-TACT-CATT--GGAAAT-AGT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAA-CCGACATT-TCGT-GCTT-GA--A-ATGTCG-TAAATTC-AAA---TTCAGA-ACTTT--ACAT-----A-TGTACAGTGTA-C-T-----A-TA-TCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----
gi|1 : acataaAT-GAAT-CA--CGCTT-ATGAGT--A-TACCGA-CTTT--GA-CGAGT-G-CTAGTGA-T-ATACATA-CACCAAAA-ACGAGA-TT-CGATT-CGCTCCtttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|1 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTCA-------ATACAAA-CC--ATT--C-ATT-GTTTAAACCAAACCGT-T------CGCC-CTTCAGTGCAAAA----TA--TT-------AGGT-ATG----A-CC-TAGAAACGTGCA-TACTGTTCAATCCACA-TTG-GATTACATGTACC-TAG-AAAC-A-T-TCAG-ACCGTG-CAATACA-TACCG--CT-ATCGGGCCTGGAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|10 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgaCCG--TGCAGACCGT-TTTTCG-TTCATCGTTTAATCGAAA-CC--GTT--C-AC--G---AAA-CCG------TT-----CGTT-CTTCAGTGCAAAA----TA--TA------AAGGT-ACG----ACCC-TAGAAACGTGCA-GGCTGTTCAATCCACC-TC-------------CC-TAG-AAAC-A-T-TCAG-ACCGTG-CATTACT-TTCCG--CT-ATCGGGTCTGGAATTGGAaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|11 : AA---TTCAGA-ACTTTG-ACATAAT-TAGTGTA------ACC-TTTATAA-TACACACGC-T-TAGCTA--AA-T-AGGGTT---AAA----ACATAGAGTGAAA-C-TAATT-T--TTTCAGTGCTGTCCTTTTATAAA-A-TAAATACTGA-TTATTGAAT-CAA-CGATT-ATGA-TTAA-TACCGA-C-----GA-CGAGT-G-CT-G--A-TCCTAC-TATCACTAAAA-ACGTGA-TT-Cggaattcaaaggaaatattctagaattac
gi|12 : A---TTCAAA---CTT--ACAT--A-CA-T-TA---TGTACTAT-----AATACCCACAC-GCT-AATAAGCA-A-AGGGC----AAA----A---AGAG---AAAC-AAATTCT--TT-CAGTGT-GTCCTTTTA--AAGA-TAAA--CTGA-TTAT-GAATTCAAGCGATT-ATGA-T--ACTACCGATCTTTCTGATCGAGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGCTT-
gi|13 : TT---AAGCC-ACA----TCCA-TCGAAACGTGCA-GACCGTTTAA--AACA-T----AC--------CC-TAA-AATT-A-T-TGA--ACCGTGTCAGT-CA-TT
gi|15 : gtgcgaaccgtttcgtgcaagaatcattatgtacacgaT------T------------G---TAAATATA-TACT-CACTTAAGAAAT-ATT---TTTCACT-A-T-A--TATTC-CT-A--TAGTA-TCCGGCAAT-TCGT-ACTT-AA--A-AGGTCGCGAAATTC-AAA---TTCAAGCATTTTTAACAT--T-Ctagtatgcaataggtggacatttttggaaattttggtaattaatatcaaaatgttgactttcaacattgaaa
gi|17 : ttctaacacaaatacCG----GCCC-TAGAAACGTGCA-GACCGTGCAGTCCACA-TTG-GAT------TACC-TAG-AAAC-A-T-TCAG-A
gi|2 : ACATTACATATTCATA------AA-CTTTCTTTTGCG-CTTGCATCGTGACTACATG-G-AT-----CTATTAATTAT-ATTTTATTA-CTACATGTAATA------TTTTGTTCTTCATGAT-TTTGTTATTGATTTTGTAGTTTTACTTA--GTT---CATTTTCAGTTTGA-T--TTTATTTCTGTT-TTAATGAATA---TA-AGGTATTATTTAA-TAC-CAG---------------T-ACGGGGGAAAAAACAA--TTTTTGCAG-CAA-GATATTTTTTTCCACACATATTGCTGCATTGTATACT------------G---TACATGTA-TACTTCATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGC------GT-GTTTTGA--A-AGGTCGCCAAATT-----------AAA-ACTAT--ACAT---------------------------A-TACTCAC-C-G-T-GTTA--TA-A-AGGGTTTAAAAATTTTA---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAA---CTGA-TTAT-GA-----------T-AT--------TACCGC-TTTT--GA-TGCGT-G-CTAG--G------------A--TAAA---GTGA-TTTCGTTTTCGCTCCT--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATT--C-ATT-GTTTAAACCAAACCATTT------CGCC-CTTCAGTGCAAAA----CATTTTTTT---AA-GT-ACG----GCCC-TAGAAACGTGCAGGACTGTTCAATCCACA-TCGTGAT------AACCGTAG-AAAC-A-T-TCAGAACCGCG-CAATACA-TT-CG--CT-ATCGGGTC-GGAAATGGA
gi|3 : TTACATAAATATGTTCATAAA-CTTTCTTG-GCGTCTTGCAG-TTGACTACATG-T-ATGTA----GT--ATTATTGCTTTATTA-ATTT------TA------TT--GTTCTTAATGCT-TTTGTTACTTGTTTTGT-GTTTTACATA--GTTGTTCAGTTT------GT-A--TT-ATTTC-GTT-T-AATGAATA---TT-A----TTATTCAT-TGGGGGGGGGGGGAGGGGGCTCC-ACAG--------TTAAGCTT---GCAG-CAACGT---------------ATGTT------TT------TCCTCACATATT-G---TACATGT----TT-CATT--GGAAATGATT---C----CT-A-TGAA-TA-TGGCT-GATT-GTA-TCTGGCAATATCGTTGTTT-AA--ACAGGTTGCCAAATTC----------AAA-ACTTTC-AGAT-----A-TGTA---CTTAGC-T-----A-T-CTCAC-CAG-T-GTTA--TATATATGGT----AAAG---A---AGAG---AA-C-TAATT-T--TT-CAGTATTGT-CTT------------------GAGTTAC-TAAT-CAAACGATTTATGA-T--A-TA--GA-CTTT--GA-CGCGTTG-CTAG--A-T-TTAT-TA-CACCTAAATAAGT-A-TT--GTTT--GCCTCGGTTGCAGAC-GT-TTTTCGATTAG-------ATG--AA-CCCAATC--ACATTCGTTTAAA-CAA------CAGTATACGCCTCTTCAGTGCAAAA----TA--TTTTT---AA-GT-ACG----G-TC-TAG-AAC---TC-GACTGTTCAAT-CACA-TGG-CA-------TA-C-TAG--AAT-ATT-TCAG-AACGCG-CAATACACTTCCG--CTAATC-GGTCTGAAAATGgctaggaaaggtgtagaattcaaaaaaaaatattttagaattaaaaaacttttgcagataattt
gi|4 : ACATTACATATTCATATTCACAAT-CGTTCTTT-GCG-CTTGCAT-GTGACTACATGTACATGTA-TCTATTGATTATCATTTTATTA-TTAT------TA------CTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTT---CATTTT------GA-T--TT-ATTTCTGTT-TTAATGAATA---CA-A----TTATTCAT-TAAGCAG---------------T-ATAG--------ATA---TT---TCAG-CAA-G----------------ATATT------TG------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTTGCT-G--T-GTAAACTGGCAAT-TCGT-GCTT-GA--A-TGGTCGCGAAATTC-GAA---ATCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGTGT----AAA----T---AGAG---AA-CCTAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCACCG--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATT--A-ATT-GT---------------T------CGCC-CTTCAGTGCAAAA----TA-----TT---AAGGT-ACG----GCCC-TAGAAACGTGCA-GACTATTCAATCCACA-TTG-GAG------TACC-TGG-AAAC-A-T-TCAG-ACCGTG-CAATGTA-TTCCG--CT-ATCGGGTCTGGAAATGGAaggaggaaaatgggcttagaattcaaaagaaagtatatttagcattatagacttttgcataaataacttg
gi|5 : acCATATTCATCAA-CTTTTTTG-ACG-CT-GCAT-GTGACTA-----A-GTGTA-TCCATCAATTAATATTTCATTA-CAAT------TA------TTT---TCTTCATGCT-TTTGAT-------TTGTA-TTTTACTCAAAGT----CATTTTCAGTT-GA-TATCT-ATTTC-GTTATTAATGAATAATTCC-A----TTATTAATCTAAACAG---------------TCACAGC-------ATA---TT---GCAGACAA-G----------------ATATT------TT------T------------GGCACACACGTACTGCA-CATA--CATAAT-GTTATAC----CTCACT-AGACAATATCTAG--A-GTA--TCGGCAAT-TCGT-ACTT-GATAA-AGGTCGCGAAATTCAGAAACCTTCACA-ACTTT--ACAC--TACA---------------------G-TACTCAC-C---T-GTTA--TC-A-AGG-T----AAA----A---C-AG---AA-CCTAATT-TCTTT-CAGCATTGTACTTTAA--CA-ACTAAA--CTGA-TTAT-GAAT-CTA-CCATTCATGA-T--ATTACCGA-CTTT--GACCGCGT-GCCTAG--ATT-CTAC-TA--A-CTAAA-A-GTGACTT-CGTTT-C-CTTCG--TGCAAACAGTATTTTTG-TTCA-------A
gi|6 : aatactaa-CGTTCTG--TGCAGATCGC-ACAGCG-CTCC-------GAGCAAA-CC--GTT-----TC-GCGCAAG--AA------T------CG----TTCCGTACATGA----T-------C---AAACC-ACG----CCCA-TAGAAAAGTGCA-CACTGTTCAAACCACACCCT-TAT------AACCTTAA-AGACTA-TGTTAA-A-CGTG-CAAGGCA-TTTCAGTCT-AT---ATCTGGAA
gi|7 : gttccgtgtagaccgtgcatatcgcacaacgttccgtgtagaccgtacagT--T-TA-CATA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-ATGGT----AAA----A---AGAG---AA-CATAATT-T--TT-CAGTATTGTACTT------------------GA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-TTAT-TA-CACCTAAA-AAGTGA-TT-TGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTCA-------ATGCAAA-CC--ATC--C-ATT-GTTTAAACCAAACCGT-T------CGCC-CTTCAGTGCAAAA----TA--TTTTT---AA-GT-ACG----GTCC-TAGAAACGTGCA-GACTGTTCAATCCACA-TTG-CAT------TACC-TAG-AAAA-C-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGAcaggtggacgattttgagaaatcgagcaattatttcaatatctctcaaaggtagactttcaacagtgaaaatctgcaaataattgaaacaaaatacagtaattaaaagttttaaaaccaccagacagaacaaaattcgatacaatcgtagccctcatagaaatttcaacacccttgatagtctccaaagacaatttttttccattaaatatattttcatcaaaattgttta
gi|8 : AT-GAAA-CAA-CTCTC-AT-A-T--G-TACGCA-CT----GA-C---T-G-CCAG--A-C-CT--------CC---A-AGGTGT-TC-TGATT-CGTTCCA--TGCAAATCAT-CCTCCG-TTCC-------GTTTAATTCC--ACTCAA-ACT-GTTCA------------T------CGCT-C--CATATCAAAACGCTTA--TTCTTTATAAGATCAAGCCATGCTCGTACAAACGTGCA-AACAATTCAAGCCACG-CC-------------CC-TAGCAAAC---T-GCAG-ACGGTG-CAAGCCA-TTTCgaaaatggcttagaattcaaaagaaatattttagcattatagacttttgcaaataatttgaacaaaataatga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAAACGTTTCATTTCATTGCGTTCAGACTGCTCAGCGTTTTGTCCAAATCATTCAGATTCCGTTCGTGTGCAAATAATTGTGTGCAGGAGTCGTTCCATGCAAGATAAAATCAAATCATAAAGCATACAACATTTTCATGTCATTCCATACAAACTTGTAGACCGTGCAGACTACTATACCATAGCGAAATGGGACAATGGAAATTCAAACATTTTAAAATCTCTCTAATATAGGCTTTCAGTATTAAAACCCCTGCAGATAATTTGAA
Unaligned ( gi|14 ): ATTACACCATTAAAACTTGCAGACTGTACGAAACATACAAGCATTCCACTAAGGGATTTGGAAAAGGTGGACGTTCATGAAAATTGAGTAATTATTTCAAAATTCACAAAGATGGACTTAACAGTGAATATCTGGCAAATAACCTTGAA
Unaligned ( gi|16 ): AAACCGTTCAGAGTTCTGTACAGACCAACAACATTCAGTATTCCGTACAGGCCGTTCGGTGTTCCGTGAAAACCGTTCAGCATTCTGTGCAGATCGTTCAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222 11 22222222222222 11 1 11 1 22222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111 1111 22 11111111 11 555555555555555555555555555 1 1111 22222222 111 1 2222222222222222 1111 2222222222222 11111 111111111111 33 11111111 3333333 3333333333333
lowQualScore : 0 22 8 88 8 0 8 55555 33 3 0 3 8 88888888888888 88 8 1 0 0 11 0 0 6 99 8 5 8 0 88888888888 8 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 6 99 6 88888888 6 6 6 77 5 33 6 1111 33 6 6 6 99 6 1 88888888 5 66 333333333333333333333333333 5 0 999 5 66 5 5 5555 00000000 000 5 7 5 77 5 4 7777777777777777 5 4 4 8 8 1 4 0000 4 66 8 1 4 4 66 777 4 55 1 2 777 4 4 4 66 4 4 1111111111111 22222 000000000000 5 33 5 88888888 0000000 8 33 4 0 4 5555555555555 8 4 666 4 4 0 4 2 4 0 77 5 0
lowQualScore : . .. . .. . . . ..... .. . . . . .............. .. . . . . .. . . . .. . . . . ........... . . ...................................................................................................... . . .. . ........ . . . .. . .. . .... .. . . . .. . . ........ . .. ........................... . . ... . .. . . .... ........ ... . . . .. . . ................ . . . . . . . .... . .. . . . . .. ... . .. . . ... . . . .. . . ............. ..... ............ . .. . ........ ....... . .. . . . ............. . . ... . . . . . . . .. . .
lowQualScore : 8 00 0 66 0 6 0 66666 66 8 8 8 0 00000000000000 88 0 4 8 8 00 8 8 0 00 0 4 0 8 00000000000 0 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 7 22 7 55555555 7 7 7 77 2 55 7 2222 00 7 7 7 22 7 0 44444444 0 99 888888888888888888888888888 0 0 444 0 99 0 0 6666 33333333 000 7 1 7 99 7 9 0000000000000000 7 4 4 9 9 1 4 3333 4 11 9 1 4 4 11 000 4 66 1 2 666 4 4 0 11 4 4 1111111111111 55555 111111111111 0 88 0 11111111 4444444 4 99 0 9 0 7777777777777 0 0 333 0 0 7 4 4 4 2 99 7 7
consensus : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATA-TT-ATTTCTGTT-TTAATGAATA---TA-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCGTTCA---TCGTTTAA-ACCA-AACCG-TTCGCC-C--------TTCAGTGCAAAATA--TTTTTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
Reference ( family-3831 ) : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTT-GAT--TT-ATTTCTGTT-TTAATGAATA---TA-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATTCA---TTGTTTAA-ACCA-AACC--TTCGCC-C--------TTCAGTGCAAAATA--TTTTTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
gi|1 : ATTACATATTCATATTCACAAAACTTTCTTT-GCG-CT-GCAT-GTGACTACA-----ATGTAATCTATTAAT-ATTATTTCATTAACTAT------TACATGTATTT-GTTCTTCATGCTGTTTGATATTGATTTTGTAGTTTTACTTA--GTTTATCTTCAGTTTGAT--TT-ATTT-------TAATGACTA---TATA----TTATCCAT-TAAGCAG---------------T-ACAA--------ATA---TT---GCAG-CCA-G----------------ATATT------TT------TTCCACAACATATG---TACATGAA-TACT-CATT--GGAAAT-AGT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAA-CCGACATT-TCGT-GCTT-GA--A-ATGTCG-TAAATTC-AAA---TTCAGA-ACTTT--ACAT-----A-TGTACAGTGTA-C-T-----A-TA-TCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----
gi|1 : acataaAT-GAAT-CA--CGCTT-ATGAGT--A-TACCGA-CTTT--GA-CGAGT-G-CTAGTGA-T-ATACATA-CACCAAAA-ACGAGA-TT-CGATT-CGCTCCtttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|1 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATAC-----AAACCATTCA---TTGTTTAA-ACCA-AACCG-TTCGCC-C--------TTCAGTGCAAAATA--TT----AGGTATGA-CCTAGAAACGTGCA-TACTGTTCAATCCACA-TTG-GATTACATGTACC-TAG-AAAC-A-T-TCAG-ACCGTG-CAATACA-TACCG--CT-ATCGGGCCTGGAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|10 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgaCCG--TGCAGACCGT-TTTTCG-TTC-----ATCGTTTAATCG-----AAACCGTTCA-------------CGA-AACCG-TTCGTT-C--------TTCAGTGCAAAATA--TA---AAGGTACGACCCTAGAAACGTGCA-GGCTGTTCAATCCACC-TC-------------CC-TAG-AAAC-A-T-TCAG-ACCGTG-CATTACT-TTCCG--CT-ATCGGGTCTGGAATTGGAaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|11 : AA---TTCAGA-ACTTTG-ACATAAT-TAGTGTA------ACC-TTTATAA-TACACACGC-T-TAGCTA--AA-T-AGGGTT---AAA----ACATAGAGTGAAA-C-TAATT-T--TTTCAGTGCTGTCCTTTTATAAA-A-TAAATACTGA-TTATTGAAT-CAA-CGATT-ATGA-TTAA-TACCGA-C-----GA-CGAGT-G-CT-G--A-TCCTAC-TATCACTAAAA-ACGTGA-TT-Cggaattcaaaggaaatattctagaattac
gi|12 : A---TTCAAA---CTT--ACAT--A-CA-T-TA---TGTACTAT-----AATACCCACAC-GCT-AATAAGCA-A-AGGGC----AAA----A---AGAG---AAAC-AAATTCT--TT-CAGTGT-GTCCTTTTA--AAGA-TAAA--CTGA-TTAT-GAATTCAAGCGATT-ATGA-T--ACTACCGATCTTTCTGATCGAGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGCTT-
gi|13 : TTAAGCCACATCCATCGAAACGTGCA-GACCGTTTAA--AACA-T----AC--------CC-TAA-AATT-A-T-TGA--ACCGTGTCAGT-CA-TT
gi|15 : gtgcgaaccgtttcgtgcaagaatcattatgtacacgaT------T------------G---TAAATATA-TACT-CACTTAAGAAAT-ATT---TTTCACT-A-T-A--TATTC-CT-A--TAGTA-TCCGGCAAT-TCGT-ACTT-AA--A-AGGTCGCGAAATTC-AAA---TTCAAGCATTTTTAACAT--T-Ctagtatgcaataggtggacatttttggaaattttggtaattaatatcaaaatgttgactttcaacattgaaa
gi|17 : ttctaacacaaatacCGGCCCTAGAAACGTGCA-GACCGTGCAGTCCACA-TTG-GAT------TACC-TAG-AAAC-A-T-TCAG-A
gi|2 : ACATTACATATTCATA------AA-CTTTCTTTTGCG-CTTGCATCGTGACTACATG-G-AT-----CTATTAATTAT-ATTTTATTA-CTACATGTAATA------TTTTGTTCTTCATGAT-TTTGTTATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGAT--TTTATTTCTGTT-TTAATGAATA---TA-AGGTATTATTTAA-TAC-CAG---------------T-ACGGGGGAAAAAACAA--TTTTTGCAG-CAA-GATATTTTTTTCCACACATATTGCTGCATTGTATACT------------G---TACATGTA-TACTTCATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGC------GT-GTTTTGA--A-AGGTCGCCAAATT-----------AAA-ACTAT--ACAT---------------------------A-TACTCAC-C-G-T-GTTA--TA-A-AGGGTTTAAAAATTTTA---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAA---CTGA-TTAT-GA-----------T-AT--------TACCGC-TTTT--GA-TGCGT-G-CTAG--G------------A--TAAA---GTGA-TTTCGTTTTCGCTCCT--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATTCA---TTGTTTAA-ACCA-AACCATTTCGCC-C--------TTCAGTGCAAAACATTTTTTTAA-GTACGGCCCTAGAAACGTGCAGGACTGTTCAATCCACA-TCGTGAT------AACCGTAG-AAAC-A-T-TCAGAACCGCG-CAATACA-TT-CG--CT-ATCGGGTC-GGAAATGGA
gi|3 : TTACATAAATATGTTCATAAA-CTTTCTTG-GCGTCTTGCAG-TTGACTACATG-T-ATGTA----GT--ATTATTGCTTTATTA-ATTT------TA------TT--GTTCTTAATGCT-TTTGTTACTTGTTTTGT-GTTTTACATA--GTTG---TTCAGTT-TGTA-TT-ATTTC-GTT-T-AATGAATA---TT-A----TTATTCAT-TGGGGGGGGGGGGAGGGGGCTCC-ACAG--------TTAAGCTT---GCAG-CAACGT---------------ATGTT------TT------TCCTCACATATT-G---TACATGT----TT-CATT--GGAAATGATT---C----CT-A-TGAA-TA-TGGCT-GATT-GTA-TCTGGCAATATCGTTGTTT-AA--ACAGGTTGCCAAATTC----------AAA-ACTTTC-AGAT-----A-TGTA---CTTAGC-T-----A-T-CTCAC-CAG-T-GTTA--TATATATGGT----AAAG---A---AGAG---AA-C-TAATT-T--TT-CAGTATTGT-CTT------------------GAGTTAC-TAAT-CAAACGATTTATGA-T--A-TA--GA-CTTT--GA-CGCGTTG-CTAG--A-T-TTAT-TA-CACCTAAATAAGT-A-TT--GTTT--GCCTCGGTTGCAGAC-GT-TTTTCGATTA-----G-------ATG------AACCCAATCACATTCGTTTAA-ACAACAGTA--TACGCCTC--------TTCAGTGCAAAATA--TTTTTAA-GTACGG-TCTAG-AAC---TC-GACTGTTCAAT-CACA-TGG-CA-------TA-C-TAG--AAT-ATT-TCAG-AACGCG-CAATACACTTCCG--CTAATC-GGTCTGAAAATGgctaggaaaggtgtagaattcaaaaaaaaatattttagaattaaaaaacttttgcagataattt
gi|4 : ACATTACATATTCATATTCACAAT-CGTTCTTT-GCG-CTTGCAT-GTGACTACATGTACATGTA-TCTATTGATTATCATTTTATTA-TTAT------TA------CTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTT------GAT--TT-ATTTCTGTT-TTAATGAATA---CA-A----TTATTCAT-TAAGCAG---------------T-ATAG--------ATA---TT---TCAG-CAA-G----------------ATATT------TG------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTTGCT-G--T-GTAAACTGGCAAT-TCGT-GCTT-GA--A-TGGTCGCGAAATTC-GAA---ATCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGTGT----AAA----T---AGAG---AA-CCTAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCACCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATTAA---TTG-----------------TTCGCC-C--------TTCAGTGCAAAATA-----TTAAGGTACGGCCCTAGAAACGTGCA-GACTATTCAATCCACA-TTG-GAG------TACC-TGG-AAAC-A-T-TCAG-ACCGTG-CAATGTA-TTCCG--CT-ATCGGGTCTGGAAATGGAaggaggaaaatgggcttagaattcaaaagaaagtatatttagcattatagacttttgcataaataacttg
gi|5 : acCATATTCATCAA-CTTTTTTG-ACG-CT-GCAT-GTGACTA-----A-GTGTA-TCCATCAATTAATATTTCATTA-CAAT------TA------TTT---TCTTCATGCT-TTTGAT-------TTGTA-TTTTACTCAAAGT-CATTTTCAGTT-GATATCT-ATTTC-GTTATTAATGAATAATTCC-A----TTATTAATCTAAACAG---------------TCACAGC-------ATA---TT---GCAGACAA-G----------------ATATT------TT------T------------GGCACACACGTACTGCA-CATA--CATAAT-GTTATAC----CTCACT-AGACAATATCTAG--A-GTA--TCGGCAAT-TCGT-ACTT-GATAA-AGGTCGCGAAATTCAGAAACCTTCACA-ACTTT--ACAC--TACA---------------------G-TACTCAC-C---T-GTTA--TC-A-AGG-T----AAA----A---C-AG---AA-CCTAATT-TCTTT-CAGCATTGTACTTTAA--CA-ACTAAA--CTGA-TTAT-GAAT-CTA-CCATTCATGA-T--ATTACCGA-CTTT--GACCGCGT-GCCTAG--ATT-CTAC-TA--A-CTAAA-A-GTGACTT-CGTTT-C-CTTCG--TGCAAACAGTATTTTTG-TTC-----A-------A
gi|6 : aatactaa-CGTTCCG--TGTAGACCGT-ACAGCG-TTC-----T-------GTGC-----AGATCGCACA---GCGCTCCG-AGCA-AACCGTTTCGCG-CAAGAATCGTTCCGTACATGAT-------CAAACCACGCCCATAGAAAAGTGCA-CACTGTTCAAACCACACCCT-TAT------AACCTTAA-AGACTA-TGTTAA-A-CGTG-CAAGGCA-TTTCAGTCT-AT---ATCTGGAA
gi|7 : gttccgtgtagaccgtgcatatcgcacaaT--T-TA-CATA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-ATGGT----AAA----A---AGAG---AA-CATAATT-T--TT-CAGTATTGTACTT------------------GA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-TTAT-TA-CACCTAAA-AAGTGA-TT-TGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATCCA---TTGTTTAA-ACCA-AACCG-TTCGCC-C--------TTCAGTGCAAAATA--TTTTTAA-GTACGGTCCTAGAAACGTGCA-GACTGTTCAATCCACA-TTG-CAT------TACC-TAG-AAAA-C-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGAcaggtggacgattttgagaaatcgagcaattatttcaatatctctcaaaggtagactttcaacagtgaaaatctgcaaataattgaaacaaaatacagtaattaaaagttttaaaaccaccagacagaacaaaattcgatacaatcgtagccctcatagaaatttcaacacccttgatagtctccaaagacaatttttttccattaaatatattttcatcaaaattgttta
gi|8 : AT-GAAA-CAA-CTCTC-AT-A-T--G-TACGCA-CT----GA-C---T-G-CCAG--A-C-CT--------CC---A-AGGTGT-TC-TGATT-CGTTCCA--TGCAAATCAT-CCTCCG-TTCCGTTTA-------ATTCCACTCAAACTGTTCA---TCGCTCCATATCA-AAACG-CTTATT-C--------TTTA---TAAGAT-------CAAGCCATGCTCGTACAAACGTGCA-AACAATTCAAGCCACG-CC-------------CC-TAGCAAAC---T-GCAG-ACGGTG-CAAGCCA-TTTCgaaaatggcttagaattcaaaagaaatattttagcattatagacttttgcaaataatttgaacaaaataatga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAAACGTTTCATTTCATTGCGTTCAGACTGCTCAGCGTTTTGTCCAAATCATTCAGATTCCGTTCGTGTGCAAATAATTGTGTGCAGGAGTCGTTCCATGCAAGATAAAATCAAATCATAAAGCATACAACATTTTCATGTCATTCCATACAAACTTGTAGACCGTGCAGACTACTATACCATAGCGAAATGGGACAATGGAAATTCAAACATTTTAAAATCTCTCTAATATAGGCTTTCAGTATTAAAACCCCTGCAGATAATTTGAA
Unaligned ( gi|14 ): ATTACACCATTAAAACTTGCAGACTGTACGAAACATACAAGCATTCCACTAAGGGATTTGGAAAAGGTGGACGTTCATGAAAATTGAGTAATTATTTCAAAATTCACAAAGATGGACTTAACAGTGAATATCTGGCAAATAACCTTGAA
Unaligned ( gi|16 ): AAACCGTTCAGAGTTCTGTACAGACCAACAACATTCAGTATTCCGTACAGGCCGTTCGGTGTTCCGTGAAAACCGTTCAGCATTCTGTGCAGATCGTTCAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222 11 22222222222222 11 1 1 22222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111 1111 22 11111111 11 555555555555555555555555555 1 1111 22222222 111 1 2222222222222222 1111 2222222222222 111111 111111111111111 111 111111 3333333 3333333333333
lowQualScore : 0 22 8 88 8 0 8 55555 33 3 0 3 8 88888888888888 88 8 1 0 0 11 0 0 5 0 5 8 5 8 0 88888888888 8 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 6 99 6 88888888 6 6 6 77 5 33 6 1111 33 6 6 6 99 6 1 88888888 5 66 333333333333333333333333333 5 0 999 5 66 5 5 5555 00000000 000 5 7 5 77 5 4 7777777777777777 5 4 4 8 8 1 4 0000 4 66 8 1 4 4 66 777 4 55 1 2 777 4 4 4 55 4 4 0000000000000 222222 666666666666666 4 4 222 222222 5 0000000 8 33 4 0 4 5555555555555 8 4 666 4 4 0 4 2 4 0 77 5 0
lowQualScore : . .. . .. . . . ..... .. . . . . .............. .. . . . . .. . . . . . . . . . ........... . . ...................................................................................................... . . .. . ........ . . . .. . .. . .... .. . . . .. . . ........ . .. ........................... . . ... . .. . . .... ........ ... . . . .. . . ................ . . . . . . . .... . .. . . . . .. ... . .. . . ... . . . .. . . ............. ...... ............... . . ... ...... . ....... . .. . . . ............. . . ... . . . . . . . .. . .
lowQualScore : 8 00 0 66 0 6 0 66666 66 8 8 8 0 00000000000000 88 0 4 8 8 00 8 8 6 8 8 0 4 0 8 00000000000 0 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 7 22 7 55555555 7 7 7 77 2 55 7 2222 00 7 7 7 22 7 0 44444444 0 99 888888888888888888888888888 0 0 444 0 99 0 0 6666 33333333 000 7 1 7 99 7 9 0000000000000000 7 4 4 9 9 1 4 3333 4 11 9 1 4 4 11 000 4 66 1 2 666 4 4 0 55 0 0 5555555555555 222222 999999999999999 4 4 222 888888 0 4444444 4 99 0 9 0 7777777777777 0 0 333 0 0 7 4 4 4 2 99 7 7
consensus : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATAT-TATTTCTGTT-TTAATGAATA---TA-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCGTTCA---TCGTTCAA-ACCAAACCG-T-T---CGC------C-CTTCAGTGCAAAATA--TTTTTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
Reference ( family-3831 ) : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATAT-TATTTCTGTT-TTAATGAATA---TA-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCGTTCA---TCGTTTAA-ACCAAACCG-T-T---CGC------C-CTTCAGTGCAAAATA--TTTTTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
gi|1 : ATTACATATTCATATTCACAAAACTTTCTTT-GCG-CT-GCAT-GTGACTACA-----ATGTAATCTATTAAT-ATTATTTCATTAACTAT------TACATGTATTT-GTTCTTCATGCTGTTTGATATTGATTTTGTAGTTTTACTTA--GTTTATCTTCAGTTTGAT-T-TATTT-------TAATGACTA---TATA----TTATCCAT-TAAGCAG---------------T-ACAA--------ATA---TT---GCAG-CCA-G----------------ATATT------TT------TTCCACAACATATG---TACATGAA-TACT-CATT--GGAAAT-AGT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAA-CCGACATT-TCGT-GCTT-GA--A-ATGTCG-TAAATTC-AAA---TTCAGA-ACTTT--ACAT-----A-TGTACAGTGTA-C-T-----A-TA-TCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----
gi|1 : acataaAT-GAAT-CA--CGCTT-ATGAGT--A-TACCGA-CTTT--GA-CGAGT-G-CTAGTGA-T-ATACATA-CACCAAAA-ACGAGA-TT-CGATT-CGCTCCtttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|1 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATAC-----AAACCATTCA---TTGTTTAA-ACCAAACCG-T-T---CGC------C-CTTCAGTGCAAAATA--TT----AGGTATGA-CCTAGAAACGTGCA-TACTGTTCAATCCACA-TTG-GATTACATGTACC-TAG-AAAC-A-T-TCAG-ACCGTG-CAATACA-TACCG--CT-ATCGGGCCTGGAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|10 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgaCCG--TGCAGACCGT-TTTTCG-TTC-----ATCGTTTAATCG-----AAACCGTTCA----CG---------AAACCG-T-T---CGT------T-CTTCAGTGCAAAATA--TA---AAGGTACGACCCTAGAAACGTGCA-GGCTGTTCAATCCACC-TC-------------CC-TAG-AAAC-A-T-TCAG-ACCGTG-CATTACT-TTCCG--CT-ATCGGGTCTGGAATTGGAaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|11 : AA---TTCAGA-ACTTTG-ACATAAT-TAGTGTA------ACC-TTTATAA-TACACACGC-T-TAGCTA--AA-T-AGGGTT---AAA----ACATAGAGTGAAA-C-TAATT-T--TTTCAGTGCTGTCCTTTTATAAA-A-TAAATACTGA-TTATTGAAT-CAA-CGATT-ATGA-TTAA-TACCGA-C-----GA-CGAGT-G-CT-G--A-TCCTAC-TATCACTAAAA-ACGTGA-TT-Cggaattcaaaggaaatattctagaattac
gi|12 : A---TTCAAA---CTT--ACAT--A-CA-T-TA---TGTACTAT-----AATACCCACAC-GCT-AATAAGCA-A-AGGGC----AAA----A---AGAG---AAAC-AAATTCT--TT-CAGTGT-GTCCTTTTA--AAGA-TAAA--CTGA-TTAT-GAATTCAAGCGATT-ATGA-T--ACTACCGATCTTTCTGATCGAGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGCTT-
gi|13 : TTAAGCCACATCCATCGAAACGTGCA-GACCGTTTAA--AACA-T----AC--------CC-TAA-AATT-A-T-TGA--ACCGTGTCAGT-CA-TT
gi|15 : gtgcgaaccgtttcgtgcaagaatcattatgtacacgaT------T------------G---TAAATATA-TACT-CACTTAAGAAAT-ATT---TTTCACT-A-T-A--TATTC-CT-A--TAGTA-TCCGGCAAT-TCGT-ACTT-AA--A-AGGTCGCGAAATTC-AAA---TTCAAGCATTTTTAACAT--T-Ctagtatgcaataggtggacatttttggaaattttggtaattaatatcaaaatgttgactttcaacattgaaa
gi|16 : ttctaacacaaatacTCCG--TACAGGCCGT-TCGGTG-TTC-----C-------GTGA-----AAACCGTTCA---GCATTCTG-TGCAGATCG-T-T---CAC------
gi|17 : aaaccgttcagagttctgtacagaccaacaacattcagtatCGGCCCTAGAAACGTGCA-GACCGTGCAGTCCACA-TTG-GAT------TACC-TAG-AAAC-A-T-TCAG-A
gi|2 : ACATTACATATTCATA------AA-CTTTCTTTTGCG-CTTGCATCGTGACTACATG-G-AT-----CTATTAATTAT-ATTTTATTA-CTACATGTAATA------TTTTGTTCTTCATGAT-TTTGTTATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATTT-TATTTCTGTT-TTAATGAATA---TA-AGGTATTATTTAA-TAC-CAG---------------T-ACGGGGGAAAAAACAA--TTTTTGCAG-CAA-GATATTTTTTTCCACACATATTGCTGCATTGTATACT------------G---TACATGTA-TACTTCATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGC------GT-GTTTTGA--A-AGGTCGCCAAATT-----------AAA-ACTAT--ACAT---------------------------A-TACTCAC-C-G-T-GTTA--TA-A-AGGGTTTAAAAATTTTA---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAA---CTGA-TTAT-GA-----------T-AT--------TACCGC-TTTT--GA-TGCGT-G-CTAG--G------------A--TAAA---GTGA-TTTCGTTTTCGCTCCT--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATTCA---TTGTTTAA-ACCAAACCATT-T---CGC------C-CTTCAGTGCAAAACATTTTTTTAA-GTACGGCCCTAGAAACGTGCAGGACTGTTCAATCCACA-TCGTGAT------AACCGTAG-AAAC-A-T-TCAGAACCGCG-CAATACA-TT-CG--CT-ATCGGGTC-GGAAATGGA
gi|3 : TTACATAAATATGTTCATAAA-CTTTCTTG-GCGTCTTGCAG-TTGACTACATG-T-ATGTA----GT--ATTATTGCTTTATTA-ATTT------TA------TT--GTTCTTAATGCT-TTTGTTACTTGTTTTGT-GTTTTACATA--GTTG---TTCAGTTTG-TAT-TATTTC-GTT-T-AATGAATA---TT-A----TTATTCAT-TGGGGGGGGGGGGAGGGGGCTCC-ACAG--------TTAAGCTT---GCAG-CAACGT---------------ATGTT------TT------TCCTCACATATT-G---TACATGT----TT-CATT--GGAAATGATT---C----CT-A-TGAA-TA-TGGCT-GATT-GTA-TCTGGCAATATCGTTGTTT-AA--ACAGGTTGCCAAATTC----------AAA-ACTTTC-AGAT-----A-TGTA---CTTAGC-T-----A-T-CTCAC-CAG-T-GTTA--TATATATGGT----AAAG---A---AGAG---AA-C-TAATT-T--TT-CAGTATTGT-CTT------------------GAGTTAC-TAAT-CAAACGATTTATGA-T--A-TA--GA-CTTT--GA-CGCGTTG-CTAG--A-T-TTAT-TA-CACCTAAATAAGT-A-TT--GTTT--GCCTCGGTTGCAGAC-GT-TTTTCGATTA-----G-------ATG------AACCCAATCACATTCGTTTAA-AC--AACAG-TATA--CGC------CTCTTCAGTGCAAAATA--TTTTTAA-GTACGG-TCTAG-AAC---TC-GACTGTTCAAT-CACA-TGG-CA-------TA-C-TAG--AAT-ATT-TCAG-AACGCG-CAATACACTTCCG--CTAATC-GGTCTGAAAATGgctaggaaaggtgtagaattcaaaaaaaaatattttagaattaaaaaacttttgcagataattt
gi|4 : ACATTACATATTCATATTCACAAT-CGTTCTTT-GCG-CTTGCAT-GTGACTACATGTACATGTA-TCTATTGATTATCATTTTATTA-TTAT------TA------CTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTT------GAT-T-TATTTCTGTT-TTAATGAATA---CA-A----TTATTCAT-TAAGCAG---------------T-ATAG--------ATA---TT---TCAG-CAA-G----------------ATATT------TG------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTTGCT-G--T-GTAAACTGGCAAT-TCGT-GCTT-GA--A-TGGTCGCGAAATTC-GAA---ATCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGTGT----AAA----T---AGAG---AA-CCTAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCACCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATT------------------AATTG-T-T---CGC------C-CTTCAGTGCAAAATA-----TTAAGGTACGGCCCTAGAAACGTGCA-GACTATTCAATCCACA-TTG-GAG------TACC-TGG-AAAC-A-T-TCAG-ACCGTG-CAATGTA-TTCCG--CT-ATCGGGTCTGGAAATGGAaggaggaaaatgggcttagaattcaaaagaaagtatatttagcattatagacttttgcataaataacttg
gi|5 : acCATATTCATCAA-CTTTTTTG-ACG-CT-GCAT-GTGACTA-----A-GTGTA-TCCATCAATTAATATTTCATTA-CAAT------TA------TTT---TCTTCATGCT-TTTGAT-------TTGTA-TTTTACTCAAAGT-CATTTTCAGTT-GATATCTATTTC-GTTATTAATGAATAATTCC-A----TTATTAATCTAAACAG---------------TCACAGC-------ATA---TT---GCAGACAA-G----------------ATATT------TT------T------------GGCACACACGTACTGCA-CATA--CATAAT-GTTATAC----CTCACT-AGACAATATCTAG--A-GTA--TCGGCAAT-TCGT-ACTT-GATAA-AGGTCGCGAAATTCAGAAACCTTCACA-ACTTT--ACAC--TACA---------------------G-TACTCAC-C---T-GTTA--TC-A-AGG-T----AAA----A---C-AG---AA-CCTAATT-TCTTT-CAGCATTGTACTTTAA--CA-ACTAAA--CTGA-TTAT-GAAT-CTA-CCATTCATGA-T--ATTACCGA-CTTT--GACCGCGT-GCCTAG--ATT-CTAC-TA--A-CTAAA-A-GTGACTT-CGTTT-C-CTTCG--TGCAAACAGTATTTTTG-TTC-----A-------A
gi|6 : aatactaa-CGTTCCG--TGTAGACCGT-ACAGCG-TTC-----T-------GTGC-----AGATCGCACA---GCGCTCCG-AGCAAACCG-T-TTCGCGCAAGAATC-GTTCCGTACATGAT-------CAAACCACGCCCATAGAAAAGTGCA-CACTGTTCAAACCACACCCT-TAT------AACCTTAA-AGACTA-TGTTAA-A-CGTG-CAAGGCA-TTTCAGTCT-AT---ATCTGGAA
gi|7 : gttccgtgtagaccgtgcatatcgcacaaT--T-TA-CATA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-ATGGT----AAA----A---AGAG---AA-CATAATT-T--TT-CAGTATTGTACTT------------------GA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-TTAT-TA-CACCTAAA-AAGTGA-TT-TGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATCCA---TTGTTTAA-ACCAAACCG-T-T---CGC------C-CTTCAGTGCAAAATA--TTTTTAA-GTACGGTCCTAGAAACGTGCA-GACTGTTCAATCCACA-TTG-CAT------TACC-TAG-AAAA-C-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGAcaggtggacgattttgagaaatcgagcaattatttcaatatctctcaaaggtagactttcaacagtgaaaatctgcaaataattgaaacaaaatacagtaattaaaagttttaaaaccaccagacagaacaaaattcgatacaatcgtagccctcatagaaatttcaacacccttgatagtctccaaagacaatttttttccattaaatatattttcatcaaaattgttta
gi|8 : AT-GAAA-CAA-CTCTC-AT-A-T--G-TACGCA-CT----GA-C---T-G-CCAG--A-C-CT--------CC---A-AGGTGT-TC-TGATT-CGTTCCA--TGCAAATCAT-CCTCCG-TTCCGTTTA-------ATTCCACTCAAACTGTTCA---TCGCTCCATATCAAAACG-C-T---TAT------T-CTTTA---TAAGAT-------CAAGCCATGCTCGTACAAACGTGCA-AACAATTCAAGCCACG-CC-------------CC-TAGCAAAC---T-GCAG-ACGGTG-CAAGCCA-TTTCgaaaatggcttagaattcaaaagaaatattttagcattatagacttttgcaaataatttgaacaaaataatga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAAACGTTTCATTTCATTGCGTTCAGACTGCTCAGCGTTTTGTCCAAATCATTCAGATTCCGTTCGTGTGCAAATAATTGTGTGCAGGAGTCGTTCCATGCAAGATAAAATCAAATCATAAAGCATACAACATTTTCATGTCATTCCATACAAACTTGTAGACCGTGCAGACTACTATACCATAGCGAAATGGGACAATGGAAATTCAAACATTTTAAAATCTCTCTAATATAGGCTTTCAGTATTAAAACCCCTGCAGATAATTTGAA
Unaligned ( gi|14 ): ATTACACCATTAAAACTTGCAGACTGTACGAAACATACAAGCATTCCACTAAGGGATTTGGAAAAGGTGGACGTTCATGAAAATTGAGTAATTATTTCAAAATTCACAAAGATGGACTTAACAGTGAATATCTGGCAAATAACCTTGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222 11 22222222222222 11 1 1 22222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111 1111 22 11111111 11 555555555555555555555555555 1 1111 22222222 111 1 2222222222222222 1111 2222222222222 11111 111111111111111 111 11111111 3333333 3333333333333
lowQualScore : 0 22 8 88 8 0 8 55555 33 3 0 3 8 88888888888888 88 8 1 0 0 11 0 0 5 0 5 8 5 8 0 88888888888 8 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 6 99 6 88888888 6 6 6 77 5 33 6 1111 33 6 6 6 99 6 1 88888888 5 66 333333333333333333333333333 5 0 999 5 66 5 5 5555 00000000 000 5 7 5 77 5 4 7777777777777777 5 4 4 8 8 1 4 0000 4 66 8 1 4 4 66 777 4 55 1 2 777 4 4 4 55 4 4 0000000000000 00000 777777777777777 4 4 111 22222222 4 9999999 8 33 4 0 4 5555555555555 8 4 666 4 4 0 4 2 4 4 66 5 2
lowQualScore : . .. . .. . . . ..... .. . . . . .............. .. . . . . .. . . . . . . . . . ........... . . ...................................................................................................... . . .. . ........ . . . .. . .. . .... .. . . . .. . . ........ . .. ........................... . . ... . .. . . .... ........ ... . . . .. . . ................ . . . . . . . .... . .. . . . . .. ... . .. . . ... . . . .. . . ............. ..... ............... . . ... ........ . ....... . .. . . . ............. . . ... . . . . . . . .. . .
lowQualScore : 8 00 0 66 0 6 0 66666 66 8 8 8 0 00000000000000 88 0 4 8 8 00 8 8 6 8 8 0 4 0 8 00000000000 0 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 7 22 7 55555555 7 7 7 77 2 55 7 2222 00 7 7 7 22 7 0 44444444 0 99 888888888888888888888888888 0 0 444 0 99 0 0 6666 33333333 000 7 1 7 99 7 9 0000000000000000 7 4 4 9 9 1 4 3333 4 11 9 1 4 4 11 000 4 66 1 2 666 4 4 0 55 0 0 5555555555555 00000 444444444444444 0 0 000 33333333 4 3333333 4 99 0 9 0 7777777777777 0 0 333 0 0 7 4 4 4 5 99 0 5
consensus : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATAT-TATTTCTGTT-TTAATGAATA---TA-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCGTTCA---TCGTTCAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA--TT-TTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
Reference ( family-3831 ) : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATAT-TATTTCTGTT-TTAATGAATA---TA-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCGTTCA---TCGTTCAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA--TTTTTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
gi|1 : ATTACATATTCATATTCACAAAACTTTCTTT-GCG-CT-GCAT-GTGACTACA-----ATGTAATCTATTAAT-ATTATTTCATTAACTAT------TACATGTATTT-GTTCTTCATGCTGTTTGATATTGATTTTGTAGTTTTACTTA--GTTTATCTTCAGTTTGAT-T-TATTT-------TAATGACTA---TATA----TTATCCAT-TAAGCAG---------------T-ACAA--------ATA---TT---GCAG-CCA-G----------------ATATT------TT------TTCCACAACATATG---TACATGAA-TACT-CATT--GGAAAT-AGT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAA-CCGACATT-TCGT-GCTT-GA--A-ATGTCG-TAAATTC-AAA---TTCAGA-ACTTT--ACAT-----A-TGTACAGTGTA-C-T-----A-TA-TCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----
gi|1 : acataaAT-GAAT-CA--CGCTT-ATGAGT--A-TACCGA-CTTT--GA-CGAGT-G-CTAGTGA-T-ATACATA-CACCAAAA-ACGAGA-TT-CGATT-CGCTCCtttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|1 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATAC-----AAACCATTCA---TTGTTTAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA--TT----AGGTATGA-CCTAGAAACGTGCA-TACTGTTCAATCCACA-TTG-GATTACATGTACC-TAG-AAAC-A-T-TCAG-ACCGTG-CAATACA-TACCG--CT-ATCGGGCCTGGAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|10 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgaCCG--TGCAGACCGT-TTTTCG-TTC-----ATCGTTTAATCG-----AAACCGTTCA----CG---------AAACCG-T-T---CGT------T-CTTCA-GTGCAAAATA--TA---AAGGTACGACCCTAGAAACGTGCA-GGCTGTTCAATCCACC-TC-------------CC-TAG-AAAC-A-T-TCAG-ACCGTG-CATTACT-TTCCG--CT-ATCGGGTCTGGAATTGGAaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|11 : AA---TTCAGA-ACTTTG-ACATAAT-TAGTGTA------ACC-TTTATAA-TACACACGC-T-TAGCTA--AA-T-AGGGTT---AAA----ACATAGAGTGAAA-C-TAATT-T--TTTCAGTGCTGTCCTTTTATAAA-A-TAAATACTGA-TTATTGAAT-CAA-CGATT-ATGA-TTAA-TACCGA-C-----GA-CGAGT-G-CT-G--A-TCCTAC-TATCACTAAAA-ACGTGA-TT-Cggaattcaaaggaaatattctagaattac
gi|12 : A---TTCAAA---CTT--ACAT--A-CA-T-TA---TGTACTAT-----AATACCCACAC-GCT-AATAAGCA-A-AGGGC----AAA----A---AGAG---AAAC-AAATTCT--TT-CAGTGT-GTCCTTTTA--AAGA-TAAA--CTGA-TTAT-GAATTCAAGCGATT-ATGA-T--ACTACCGATCTTTCTGATCGAGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGCTT-
gi|13 : TGC-----GAACCGTT-----TCGTGCAA-G---AATCA-T-T------------------ATGTACACGAT-------TAAGCCACATCCATCGAAACGTGCA-GACCGTTTAA--AACA-T----AC--------CC-TAA-AATT-A-T-TGA--ACCGTGTCAGT-CA-TT
gi|15 : gT------T------------G---TAAATATA-TACT-CACTTAAGAAAT-ATT---TTTCACT-A-T-A--TATTC-CT-A--TAGTA-TCCGGCAAT-TCGT-ACTT-AA--A-AGGTCGCGAAATTC-AAA---TTCAAGCATTTTTAACAT--T-Ctagtatgcaataggtggacatttttggaaattttggtaattaatatcaaaatgttgactttcaacattgaaa
gi|16 : ttctaacacaaatacTCCG--TACAGGCCGT-TCGGTG-TTC-----C-------GTGA-----AAACCGTTCA---GCATTCTG-TGCAGATCG-T-T---CAC------
gi|17 : aaaccgttcagagttctgtacagaccaacaacattcagtatCGGCCCTAGAAACGTGCA-GACCGTGCAGTCCACA-TTG-GAT------TACC-TAG-AAAC-A-T-TCAG-A
gi|2 : ACATTACATATTCATA------AA-CTTTCTTTTGCG-CTTGCATCGTGACTACATG-G-AT-----CTATTAATTAT-ATTTTATTA-CTACATGTAATA------TTTTGTTCTTCATGAT-TTTGTTATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATTT-TATTTCTGTT-TTAATGAATA---TA-AGGTATTATTTAA-TAC-CAG---------------T-ACGGGGGAAAAAACAA--TTTTTGCAG-CAA-GATATTTTTTTCCACACATATTGCTGCATTGTATACT------------G---TACATGTA-TACTTCATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGC------GT-GTTTTGA--A-AGGTCGCCAAATT-----------AAA-ACTAT--ACAT---------------------------A-TACTCAC-C-G-T-GTTA--TA-A-AGGGTTTAAAAATTTTA---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAA---CTGA-TTAT-GA-----------T-AT--------TACCGC-TTTT--GA-TGCGT-G-CTAG--G------------A--TAAA---GTGA-TTTCGTTTTCGCTCCT--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATTCA---TTGTTTAA-ACCAAACCATT-T---CGC------C-CTTCA-GTGCAAAACATTTTTTTAA-GTACGGCCCTAGAAACGTGCAGGACTGTTCAATCCACA-TCGTGAT------AACCGTAG-AAAC-A-T-TCAGAACCGCG-CAATACA-TT-CG--CT-ATCGGGTC-GGAAATGGA
gi|3 : TTACATAAATATGTTCATAAA-CTTTCTTG-GCGTCTTGCAG-TTGACTACATG-T-ATGTA----GT--ATTATTGCTTTATTA-ATTT------TA------TT--GTTCTTAATGCT-TTTGTTACTTGTTTTGT-GTTTTACATA--GTTG---TTCAGTTTG-TAT-TATTTC-GTT-T-AATGAATA---TT-A----TTATTCAT-TGGGGGGGGGGGGAGGGGGCTCC-ACAG--------TTAAGCTT---GCAG-CAACGT---------------ATGTT------TT------TCCTCACATATT-G---TACATGT----TT-CATT--GGAAATGATT---C----CT-A-TGAA-TA-TGGCT-GATT-GTA-TCTGGCAATATCGTTGTTT-AA--ACAGGTTGCCAAATTC----------AAA-ACTTTC-AGAT-----A-TGTA---CTTAGC-T-----A-T-CTCAC-CAG-T-GTTA--TATATATGGT----AAAG---A---AGAG---AA-C-TAATT-T--TT-CAGTATTGT-CTT------------------GAGTTAC-TAAT-CAAACGATTTATGA-T--A-TA--GA-CTTT--GA-CGCGTTG-CTAG--A-T-TTAT-TA-CACCTAAATAAGT-A-TT--GTTT--GCCTCGGTTGCAGAC-GT-TTTTCGATTA-----G-------ATG------AACCCAATCACATTCGTTTAA-AC--AACAG-TATA--CGC------CTCTTCA-GTGCAAAATA--TTTTTAA-GTACGG-TCTAG-AAC---TC-GACTGTTCAAT-CACA-TGG-CA-------TA-C-TAG--AAT-ATT-TCAG-AACGCG-CAATACACTTCCG--CTAATC-GGTCTGAAAATGgctaggaaaggtgtagaattcaaaaaaaaatattttagaattaaaaaacttttgcagataattt
gi|4 : ACATTACATATTCATATTCACAAT-CGTTCTTT-GCG-CTTGCAT-GTGACTACATGTACATGTA-TCTATTGATTATCATTTTATTA-TTAT------TA------CTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTT------GAT-T-TATTTCTGTT-TTAATGAATA---CA-A----TTATTCAT-TAAGCAG---------------T-ATAG--------ATA---TT---TCAG-CAA-G----------------ATATT------TG------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTTGCT-G--T-GTAAACTGGCAAT-TCGT-GCTT-GA--A-TGGTCGCGAAATTC-GAA---ATCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGTGT----AAA----T---AGAG---AA-CCTAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCACCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATT------------------AATTG-T-T---CGC------C-CTTCA-GTGCAAAATA-----TTAAGGTACGGCCCTAGAAACGTGCA-GACTATTCAATCCACA-TTG-GAG------TACC-TGG-AAAC-A-T-TCAG-ACCGTG-CAATGTA-TTCCG--CT-ATCGGGTCTGGAAATGGAaggaggaaaatgggcttagaattcaaaagaaagtatatttagcattatagacttttgcataaataacttg
gi|5 : acCATATTCATCAA-CTTTTTTG-ACG-CT-GCAT-GTGACTA-----A-GTGTA-TCCATCAATTAATATTTCATTA-CAAT------TA------TTT---TCTTCATGCT-TTTGAT-------TTGTA-TTTTACTCAAAGT-CATTTTCAGTT-GATATCTATTTC-GTTATTAATGAATAATTCC-A----TTATTAATCTAAACAG---------------TCACAGC-------ATA---TT---GCAGACAA-G----------------ATATT------TT------T------------GGCACACACGTACTGCA-CATA--CATAAT-GTTATAC----CTCACT-AGACAATATCTAG--A-GTA--TCGGCAAT-TCGT-ACTT-GATAA-AGGTCGCGAAATTCAGAAACCTTCACA-ACTTT--ACAC--TACA---------------------G-TACTCAC-C---T-GTTA--TC-A-AGG-T----AAA----A---C-AG---AA-CCTAATT-TCTTT-CAGCATTGTACTTTAA--CA-ACTAAA--CTGA-TTAT-GAAT-CTA-CCATTCATGA-T--ATTACCGA-CTTT--GACCGCGT-GCCTAG--ATT-CTAC-TA--A-CTAAA-A-GTGACTT-CGTTT-C-CTTCG--TGCAAACAGTATTTTTG-TTC-----A-------A
gi|6 : aatactaa-CGTTCCG--TGTAGACCGT-ACAGCG-TTC-----T-------GTGC-----AGATCGCACA---GCGCTCCG-AGCAAACCG-T-TTCGCGCAAGAATC-GTTCC-GTACATGAT-------CAAACCACGCCCATAGAAAAGTGCA-CACTGTTCAAACCACACCCT-TAT------AACCTTAA-AGACTA-TGTTAA-A-CGTG-CAAGGCA-TTTCAGTCT-AT---ATCTGGAA
gi|7 : gttccgtgtagaccgtgcatatcgcacaaT--T-TA-CATA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-ATGGT----AAA----A---AGAG---AA-CATAATT-T--TT-CAGTATTGTACTT------------------GA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-TTAT-TA-CACCTAAA-AAGTGA-TT-TGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATCCA---TTGTTTAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA--TTTTTAA-GTACGGTCCTAGAAACGTGCA-GACTGTTCAATCCACA-TTG-CAT------TACC-TAG-AAAA-C-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGAcaggtggacgattttgagaaatcgagcaattatttcaatatctctcaaaggtagactttcaacagtgaaaatctgcaaataattgaaacaaaatacagtaattaaaagttttaaaaccaccagacagaacaaaattcgatacaatcgtagccctcatagaaatttcaacacccttgatagtctccaaagacaatttttttccattaaatatattttcatcaaaattgttta
gi|8 : AT-GAAA-CAA-CTCTC-AT-A-T--G-TACGCA-CT----GA-C---T-G-CCAG--A-C-CT--------CC---A-AGGTGT-TC-TGATT-CGTTCCA--TGCAAATCAT-CCTCCG-TTCCGTTTA-------ATTCCACTCAAACTGTTCA---TCGCTCCATATCAAAACG-C-T---TAT------T-CTTTA----TAAGAT-------CAAGCCATGCTCGTACAAACGTGCA-AACAATTCAAGCCACG-CC-------------CC-TAGCAAAC---T-GCAG-ACGGTG-CAAGCCA-TT--------------TCTGGAAAgaaaatggcttagaattcaaaagaaatattttagcattatagacttttgcaaataatttgaacaaaataatga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAAACGTTTCATTTCATTGCGTTCAGACTGCTCAGCGTTTTGTCCAAATCATTCAGATTCCGTTCGTGTGCAAATAATTGTGTGCAGGAGTCGTTCCATGCAAGATAAAATCAAATCATAAAGCATACAACATTTTCATGTCATTCCATACAAACTTGTAGACCGTGCAGACTACTATACCATAGCGAAATGGGACAATGGAAATTCAAACATTTTAAAATCTCTCTAATATAGGCTTTCAGTATTAAAACCCCTGCAGATAATTTGAA
Unaligned ( gi|14 ): ATTACACCATTAAAACTTGCAGACTGTACGAAACATACAAGCATTCCACTAAGGGATTTGGAAAAGGTGGACGTTCATGAAAATTGAGTAATTATTTCAAAATTCACAAAGATGGACTTAACAGTGAATATCTGGCAAATAACCTTGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222 11 22222222222222 11 1 1 22222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111 1111 22 11111111 11 555555555555555555555555555 1 1111 22222222 111 1 2222222222222222 1111 2222222222222 11111 111111111111111 111 11111111 3333333 3333333333333
lowQualScore : 0 22 8 88 8 0 8 55555 33 3 0 3 8 88888888888888 88 8 1 0 0 11 0 0 5 0 5 8 5 8 0 88888888888 8 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 6 99 6 88888888 6 6 6 77 5 33 6 1111 33 6 6 6 99 6 1 88888888 5 66 333333333333333333333333333 5 0 999 5 66 5 5 5555 00000000 000 5 7 5 77 5 4 7777777777777777 5 4 4 8 8 1 4 0000 4 66 8 1 4 4 66 777 4 55 1 2 777 4 4 4 55 4 4 0000000000000 00000 777777777777777 4 4 111 22222222 4 4444444 0 33 4 0 4 5555555555555 8 4 666 4 4 0 4 2 4 4 66 5 2
lowQualScore : . .. . .. . . . ..... .. . . . . .............. .. . . . . .. . . . . . . . . . ........... . . ...................................................................................................... . . .. . ........ . . . .. . .. . .... .. . . . .. . . ........ . .. ........................... . . ... . .. . . .... ........ ... . . . .. . . ................ . . . . . . . .... . .. . . . . .. ... . .. . . ... . . . .. . . ............. ..... ............... . . ... ........ . ....... . .. . . . ............. . . ... . . . . . . . .. . .
lowQualScore : 8 00 0 66 0 6 0 66666 66 8 8 8 0 00000000000000 88 0 4 8 8 00 8 8 6 8 8 0 4 0 8 00000000000 0 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 7 22 7 55555555 7 7 7 77 2 55 7 2222 00 7 7 7 22 7 0 44444444 0 99 888888888888888888888888888 0 0 444 0 99 0 0 6666 33333333 000 7 1 7 99 7 9 0000000000000000 7 4 4 9 9 1 4 3333 4 11 9 1 4 4 11 000 4 66 1 2 666 4 4 0 55 0 0 5555555555555 00000 444444444444444 0 0 000 33333333 4 0000000 9 99 0 9 0 7777777777777 0 0 333 0 0 7 4 4 4 5 99 0 5
consensus : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATAT-TATTTCTGTT-TTAATGAATA---TA-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCGTTCA---TCGTTCAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA---TTTTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
Reference ( family-3831 ) : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATAT-TATTTCTGTT-TTAATGAATA---TA-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCGTTCA---TCGTTCAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA---TTTTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
gi|1 : ATTACATATTCATATTCACAAAACTTTCTTT-GCG-CT-GCAT-GTGACTACA-----ATGTAATCTATTAAT-ATTATTTCATTAACTAT------TACATGTATTT-GTTCTTCATGCTGTTTGATATTGATTTTGTAGTTTTACTTA--GTTTATCTTCAGTTTGAT-T-TATTT-------TAATGACTA---TATA----TTATCCAT-TAAGCAG---------------T-ACAA--------ATA---TT---GCAG-CCA-G----------------ATATT------TT------TTCCACAACATATG---TACATGAA-TACT-CATT--GGAAAT-AGT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAA-CCGACATT-TCGT-GCTT-GA--A-ATGTCG-TAAATTC-AAA---TTCAGA-ACTTT--ACAT-----A-TGTACAGTGTA-C-T-----A-TA-TCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----
gi|1 : acataaAT-GAAT-CA--CGCTT-ATGAGT--A-TACCGA-CTTT--GA-CGAGT-G-CTAGTGA-T-ATACATA-CACCAAAA-ACGAGA-TT-CGATT-CGCTCCtttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|1 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATAC-----AAACCATTCA---TTGTTTAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA---TT---AGGTATGA-CCTAGAAACGTGCA-TACTGTTCAATCCACA-TTG-GATTACATGTACC-TAG-AAAC-A-T-TCAG-ACCGTG-CAATACA-TACCG--CT-ATCGGGCCTGGAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|10 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgaCCG--TGCAGACCGT-TTTTCG-TTC-----ATCGTTTAATCG-----AAACCGTTCA----CG---------AAACCG-T-T---CGT------T-CTTCA-GTGCAAAATA---TA--AAGGTACGACCCTAGAAACGTGCA-GGCTGTTCAATCCACC-TC-------------CC-TAG-AAAC-A-T-TCAG-ACCGTG-CATTACT-TTCCG--CT-ATCGGGTCTGGAATTGGAaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|11 : AA---TTCAGA-ACTTTG-ACATAAT-TAGTGTA------ACC-TTTATAA-TACACACGC-T-TAGCTA--AA-T-AGGGTT---AAA----ACATAGAGTGAAA-C-TAATT-T--TTTCAGTGCTGTCCTTTTATAAA-A-TAAATACTGA-TTATTGAAT-CAA-CGATT-ATGA-TTAA-TACCGA-C-----GA-CGAGT-G-CT-G--A-TCCTAC-TATCACTAAAA-ACGTGA-TT-Cggaattcaaaggaaatattctagaattac
gi|12 : A---TTCAAA---CTT--ACAT--A-CA-T-TA---TGTACTAT-----AATACCCACAC-GCT-AATAAGCA-A-AGGGC----AAA----A---AGAG---AAAC-AAATTCT--TT-CAGTGT-GTCCTTTTA--AAGA-TAAA--CTGA-TTAT-GAATTCAAGCGATT-ATGA-T--ACTACCGATCTTTCTGATCGAGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGCTT-
gi|13 : TGC-----GAACCGTT-----TCGTGCAA-G---AATCA-T-T------------------ATGTACACGAT-------TAAGCCACATCCATCGAAACGTGCA-GACCGTTTAA--AACA-T----AC--------CC-TAA-AATT-A-T-TGA--ACCGTGTCAGT-CA-TT
gi|15 : gT------T------------G---TAAATATA-TACT-CACTTAAGAAAT-ATT---TTTCACT-A-T-A--TATTC-CT-A--TAGTA-TCCGGCAAT-TCGT-ACTT-AA--A-AGGTCGCGAAATTC-AAA---TTCAAGCATTTTTAACAT--T-Ctagtatgcaataggtggacatttttggaaattttggtaattaatatcaaaatgttgactttcaacattgaaa
gi|16 : ttctaacacaaatacTCCG--TACAGGCCGT-TCGGTG-TTC-----C-------GTGA-----AAACCGTTCA---GCATTCTG-TGCAGATCG-T-T---CAC------
gi|17 : aaaccgttcagagttctgtacagaccaacaacattcagtatCGGCCCTAGAAACGTGCA-GACCGTGCAGTCCACA-TTG-GAT------TACC-TAG-AAAC-A-T-TCAG-A
gi|2 : ACATTACATATTCATA------AA-CTTTCTTTTGCG-CTTGCATCGTGACTACATG-G-AT-----CTATTAATTAT-ATTTTATTA-CTACATGTAATA------TTTTGTTCTTCATGAT-TTTGTTATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATTT-TATTTCTGTT-TTAATGAATA---TA-AGGTATTATTTAA-TAC-CAG---------------T-ACGGGGGAAAAAACAA--TTTTTGCAG-CAA-GATATTTTTTTCCACACATATTGCTGCATTGTATACT------------G---TACATGTA-TACTTCATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGC------GT-GTTTTGA--A-AGGTCGCCAAATT-----------AAA-ACTAT--ACAT---------------------------A-TACTCAC-C-G-T-GTTA--TA-A-AGGGTTTAAAAATTTTA---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAA---CTGA-TTAT-GA-----------T-AT--------TACCGC-TTTT--GA-TGCGT-G-CTAG--G------------A--TAAA---GTGA-TTTCGTTTTCGCTCCT--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATTCA---TTGTTTAA-ACCAAACCATT-T---CGC------C-CTTCA-GTGCAAAACATTTTTTTAA-GTACGGCCCTAGAAACGTGCAGGACTGTTCAATCCACA-TCGTGAT------AACCGTAG-AAAC-A-T-TCAGAACCGCG-CAATACA-TT-CG--CT-ATCGGGTC-GGAAATGGA
gi|3 : TTACATAAATATGTTCATAAA-CTTTCTTG-GCGTCTTGCAG-TTGACTACATG-T-ATGTA----GT--ATTATTGCTTTATTA-ATTT------TA------TT--GTTCTTAATGCT-TTTGTTACTTGTTTTGT-GTTTTACATA--GTTG---TTCAGTTTG-TAT-TATTTC-GTT-T-AATGAATA---TT-A----TTATTCAT-TGGGGGGGGGGGGAGGGGGCTCC-ACAG--------TTAAGCTT---GCAG-CAACGT---------------ATGTT------TT------TCCTCACATATT-G---TACATGT----TT-CATT--GGAAATGATT---C----CT-A-TGAA-TA-TGGCT-GATT-GTA-TCTGGCAATATCGTTGTTT-AA--ACAGGTTGCCAAATTC----------AAA-ACTTTC-AGAT-----A-TGTA---CTTAGC-T-----A-T-CTCAC-CAG-T-GTTA--TATATATGGT----AAAG---A---AGAG---AA-C-TAATT-T--TT-CAGTATTGT-CTT------------------GAGTTAC-TAAT-CAAACGATTTATGA-T--A-TA--GA-CTTT--GA-CGCGTTG-CTAG--A-T-TTAT-TA-CACCTAAATAAGT-A-TT--GTTT--GCCTCGGTTGCAGAC-GT-TTTTCGATTA-----G-------ATG------AACCCAATCACATTCGTTTAA-AC--AACAG-TATA--CGC------CTCTTCA-GTGCAAAATA---TTTTTAAGTACGG-TCTAG-AAC---TC-GACTGTTCAAT-CACA-TGG-CA-------TA-C-TAG--AAT-ATT-TCAG-AACGCG-CAATACACTTCCG--CTAATC-GGTCTGAAAATGgctaggaaaggtgtagaattcaaaaaaaaatattttagaattaaaaaacttttgcagataattt
gi|4 : ACATTACATATTCATATTCACAAT-CGTTCTTT-GCG-CTTGCAT-GTGACTACATGTACATGTA-TCTATTGATTATCATTTTATTA-TTAT------TA------CTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTT------GAT-T-TATTTCTGTT-TTAATGAATA---CA-A----TTATTCAT-TAAGCAG---------------T-ATAG--------ATA---TT---TCAG-CAA-G----------------ATATT------TG------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTTGCT-G--T-GTAAACTGGCAAT-TCGT-GCTT-GA--A-TGGTCGCGAAATTC-GAA---ATCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGTGT----AAA----T---AGAG---AA-CCTAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCACCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATT------------------AATTG-T-T---CGC------C-CTTCA-GTGCAAAATA-----TTAAGGTACGGCCCTAGAAACGTGCA-GACTATTCAATCCACA-TTG-GAG------TACC-TGG-AAAC-A-T-TCAG-ACCGTG-CAATGTA-TTCCG--CT-ATCGGGTCTGGAAATGGAaggaggaaaatgggcttagaattcaaaagaaagtatatttagcattatagacttttgcataaataacttg
gi|5 : acCATATTCATCAA-CTTTTTTG-ACG-CT-GCAT-GTGACTA-----A-GTGTA-TCCATCAATTAATATTTCATTA-CAAT------TA------TTT---TCTTCATGCT-TTTGAT-------TTGTA-TTTTACTCAAAGT-CATTTTCAGTT-GATATCTATTTC-GTTATTAATGAATAATTCC-A----TTATTAATCTAAACAG---------------TCACAGC-------ATA---TT---GCAGACAA-G----------------ATATT------TT------T------------GGCACACACGTACTGCA-CATA--CATAAT-GTTATAC----CTCACT-AGACAATATCTAG--A-GTA--TCGGCAAT-TCGT-ACTT-GATAA-AGGTCGCGAAATTCAGAAACCTTCACA-ACTTT--ACAC--TACA---------------------G-TACTCAC-C---T-GTTA--TC-A-AGG-T----AAA----A---C-AG---AA-CCTAATT-TCTTT-CAGCATTGTACTTTAA--CA-ACTAAA--CTGA-TTAT-GAAT-CTA-CCATTCATGA-T--ATTACCGA-CTTT--GACCGCGT-GCCTAG--ATT-CTAC-TA--A-CTAAA-A-GTGACTT-CGTTT-C-CTTCG--TGCAAACAGTATTTTTG-TTC-----A-------A
gi|6 : aatactaa-CGTTCCG--TGTAGACCGT-ACAGCG-TTC-----T-------GTGC-----AGATCGCACA---GCGCTCCG-AGCAAACCG-T-TTCGCGCAAGAATC-GTTCC-GTACATGAT-------CAAACCACGCCCATAGAAAAGTGCA-CACTGTTCAAACCACACCCT-TAT------AACCTTAA-AGACTA-TGTTAA-A-CGTG-CAAGGCA-TTTCAGTCT-AT---ATCTGGAA
gi|7 : gttccgtgtagaccgtgcatatcgcacaaT--T-TA-CATA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-ATGGT----AAA----A---AGAG---AA-CATAATT-T--TT-CAGTATTGTACTT------------------GA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-TTAT-TA-CACCTAAA-AAGTGA-TT-TGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATCCA---TTGTTTAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA---TTTTTAAGTACGGTCCTAGAAACGTGCA-GACTGTTCAATCCACA-TTG-CAT------TACC-TAG-AAAA-C-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGAcaggtggacgattttgagaaatcgagcaattatttcaatatctctcaaaggtagactttcaacagtgaaaatctgcaaataattgaaacaaaatacagtaattaaaagttttaaaaccaccagacagaacaaaattcgatacaatcgtagccctcatagaaatttcaacacccttgatagtctccaaagacaatttttttccattaaatatattttcatcaaaattgttta
gi|8 : AT-GAAA-CAA-CTCTC-AT-A-T--G-TACGCA-CT----GA-C---T-G-CCAG--A-C-CT--------CC---A-AGGTGT-TC-TGATT-CGTTCCA--TGCAAATCAT-CCTCCG-TTCCGTTTA-------ATTCCACTCAAACTGTTCA---TCGCTCCATATCAAAACG-C-T---TAT------T-CTTTA----TAAGAT-------CAAGCCATGCTCGTACAAACGTGCA-AACAATTCAAGCCACG-CC-------------CC-TAGCAAAC---T-GCAG-ACGGTG-CAAGCCA-TT--------------TCTGGAAAgaaaatggcttagaattcaaaagaaatattttagcattatagacttttgcaaataatttgaacaaaataatga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAAACGTTTCATTTCATTGCGTTCAGACTGCTCAGCGTTTTGTCCAAATCATTCAGATTCCGTTCGTGTGCAAATAATTGTGTGCAGGAGTCGTTCCATGCAAGATAAAATCAAATCATAAAGCATACAACATTTTCATGTCATTCCATACAAACTTGTAGACCGTGCAGACTACTATACCATAGCGAAATGGGACAATGGAAATTCAAACATTTTAAAATCTCTCTAATATAGGCTTTCAGTATTAAAACCCCTGCAGATAATTTGAA
Unaligned ( gi|14 ): ATTACACCATTAAAACTTGCAGACTGTACGAAACATACAAGCATTCCACTAAGGGATTTGGAAAAGGTGGACGTTCATGAAAATTGAGTAATTATTTCAAAATTCACAAAGATGGACTTAACAGTGAATATCTGGCAAATAACCTTGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222 11 22222222222222 11 1 1 22222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111 1111 22 11111111 11 555555555555555555555555555 1 1111 22222222 111 1 2222222222222222 1111 2222222222222 11111 111111111111111 111 11111111 3333333 3333333333333
lowQualScore : 0 22 8 88 8 0 8 55555 33 3 0 3 8 88888888888888 88 8 1 0 0 11 0 0 5 0 5 8 5 8 0 88888888888 8 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 6 99 6 88888888 6 6 6 77 5 33 6 1111 33 6 6 6 99 6 1 88888888 5 66 333333333333333333333333333 5 0 999 5 66 5 5 5555 00000000 000 5 7 5 77 5 4 7777777777777777 5 4 4 8 8 1 4 0000 4 66 8 1 4 4 66 777 4 55 1 2 777 4 4 4 55 4 4 0000000000000 00000 777777777777777 4 4 111 22222222 4 4444444 0 33 4 0 4 5555555555555 8 4 666 4 4 0 4 2 4 4 66 5 2
lowQualScore : . .. . .. . . . ..... .. . . . . .............. .. . . . . .. . . . . . . . . . ........... . . ...................................................................................................... . . .. . ........ . . . .. . .. . .... .. . . . .. . . ........ . .. ........................... . . ... . .. . . .... ........ ... . . . .. . . ................ . . . . . . . .... . .. . . . . .. ... . .. . . ... . . . .. . . ............. ..... ............... . . ... ........ . ....... . .. . . . ............. . . ... . . . . . . . .. . .
lowQualScore : 8 00 0 66 0 6 0 66666 66 8 8 8 0 00000000000000 88 0 4 8 8 00 8 8 6 8 8 0 4 0 8 00000000000 0 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 7 22 7 55555555 7 7 7 77 2 55 7 2222 00 7 7 7 22 7 0 44444444 0 99 888888888888888888888888888 0 0 444 0 99 0 0 6666 33333333 000 7 1 7 99 7 9 0000000000000000 7 4 4 9 9 1 4 3333 4 11 9 1 4 4 11 000 4 66 1 2 666 4 4 0 55 0 0 5555555555555 00000 444444444444444 0 0 000 33333333 4 0000000 9 99 0 9 0 7777777777777 0 0 333 0 0 7 4 4 4 5 99 0 5
consensus : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATAT-TATTTCTGTT-TTAATGAATA---TA-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCGTTCA---TCGTTCAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA---TTTTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
Reference ( family-3831 ) : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATAT-TATTTCTGTT-TTAATGAATA---TA-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCGTTCA---TCGTTCAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA---TTTTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
gi|1 : ATTACATATTCATATTCACAAAACTTTCTTT-GCG-CT-GCAT-GTGACTACA-----ATGTAATCTATTAAT-ATTATTTCATTAACTAT------TACATGTATTT-GTTCTTCATGCTGTTTGATATTGATTTTGTAGTTTTACTTA--GTTTATCTTCAGTTTGAT-T-TATTT-------TAATGACTA---TATA----TTATCCAT-TAAGCAG---------------T-ACAA--------ATA---TT---GCAG-CCA-G----------------ATATT------TT------TTCCACAACATATG---TACATGAA-TACT-CATT--GGAAAT-AGT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAA-CCGACATT-TCGT-GCTT-GA--A-ATGTCG-TAAATTC-AAA---TTCAGA-ACTTT--ACAT-----A-TGTACAGTGTA-C-T-----A-TA-TCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----
gi|1 : acataaAT-GAAT-CA--CGCTT-ATGAGT--A-TACCGA-CTTT--GA-CGAGT-G-CTAGTGA-T-ATACATA-CACCAAAA-ACGAGA-TT-CGATT-CGCTCCtttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|1 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATAC-----AAACCATTCA---TTGTTTAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA---TT---AGGTATGA-CCTAGAAACGTGCA-TACTGTTCAATCCACA-TTG-GATTACATGTACC-TAG-AAAC-A-T-TCAG-ACCGTG-CAATACA-TACCG--CT-ATCGGGCCTGGAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|10 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgaCCG--TGCAGACCGT-TTTTCG-TTC-----ATCGTTTAATCG-----AAACCGTTCA----CG---------AAACCG-T-T---CGT------T-CTTCA-GTGCAAAATA---TA--AAGGTACGACCCTAGAAACGTGCA-GGCTGTTCAATCCACC-TC-------------CC-TAG-AAAC-A-T-TCAG-ACCGTG-CATTACT-TTCCG--CT-ATCGGGTCTGGAATTGGAaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|11 : AA---TTCAGA-ACTTTG-ACATAAT-TAGTGTA------ACC-TTTATAA-TACACACGC-T-TAGCTA--AA-T-AGGGTT---AAA----ACATAGAGTGAAA-C-TAATT-T--TTTCAGTGCTGTCCTTTTATAAA-A-TAAATACTGA-TTATTGAAT-CAA-CGATT-ATGA-TTAA-TACCGA-C-----GA-CGAGT-G-CT-G--A-TCCTAC-TATCACTAAAA-ACGTGA-TT-Cggaattcaaaggaaatattctagaattac
gi|12 : A---TTCAAA---CTT--ACAT--A-CA-T-TA---TGTACTAT-----AATACCCACAC-GCT-AATAAGCA-A-AGGGC----AAA----A---AGAG---AAAC-AAATTCT--TT-CAGTGT-GTCCTTTTA--AAGA-TAAA--CTGA-TTAT-GAATTCAAGCGATT-ATGA-T--ACTACCGATCTTTCTGATCGAGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGCTT-
gi|13 : TGC-----GAACCGTT-----TCGTGCAA-G---AATCA-T-T------------------ATGTACACGAT-------TAAGCCACATCCATCGAAACGTGCA-GACCGTTTAA--AACA-T----AC--------CC-TAA-AATT-A-T-TGA--ACCGTGTCAGT-CA-TT
gi|15 : gT------T------------G---TAAATATA-TACT-CACTTAAGAAAT-ATT---TTTCACT-A-T-A--TATTC-CT-A--TAGTA-TCCGGCAAT-TCGT-ACTT-AA--A-AGGTCGCGAAATTC-AAA---TTCAAGCATTTTTAACAT--T-Ctagtatgcaataggtggacatttttggaaattttggtaattaatatcaaaatgttgactttcaacattgaaa
gi|16 : ttctaacacaaatacTCCG--TACAGGCCGT-TCGGTG-TTC-----C-------GTGA-----AAACCGTTCA---GCATTCTG-TGCAGATCG-T-T---CAC------
gi|17 : aaaccgttcagagttctgtacagaccaacaacattcagtatCGGCCCTAGAAACGTGCA-GACCGTGCAGTCCACA-TTG-GAT------TACC-TAG-AAAC-A-T-TCAG-A
gi|2 : ACATTACATATTCATA------AA-CTTTCTTTTGCG-CTTGCATCGTGACTACATG-G-AT-----CTATTAATTAT-ATTTTATTA-CTACATGTAATA------TTTTGTTCTTCATGAT-TTTGTTATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATTT-TATTTCTGTT-TTAATGAATA---TA-AGGTATTATTTAA-TAC-CAG---------------T-ACGGGGGAAAAAACAA--TTTTTGCAG-CAA-GATATTTTTTTCCACACATATTGCTGCATTGTATACT------------G---TACATGTA-TACTTCATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGC------GT-GTTTTGA--A-AGGTCGCCAAATT-----------AAA-ACTAT--ACAT---------------------------A-TACTCAC-C-G-T-GTTA--TA-A-AGGGTTTAAAAATTTTA---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAA---CTGA-TTAT-GA-----------T-AT--------TACCGC-TTTT--GA-TGCGT-G-CTAG--G------------A--TAAA---GTGA-TTTCGTTTTCGCTCCT--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATTCA---TTGTTTAA-ACCAAACCATT-T---CGC------C-CTTCA-GTGCAAAACATTTTTTTAA-GTACGGCCCTAGAAACGTGCAGGACTGTTCAATCCACA-TCGTGAT------AACCGTAG-AAAC-A-T-TCAGAACCGCG-CAATACA-TT-CG--CT-ATCGGGTC-GGAAATGGA
gi|3 : TTACATAAATATGTTCATAAA-CTTTCTTG-GCGTCTTGCAG-TTGACTACATG-T-ATGTA----GT--ATTATTGCTTTATTA-ATTT------TA------TT--GTTCTTAATGCT-TTTGTTACTTGTTTTGT-GTTTTACATA--GTTG---TTCAGTTTG-TAT-TATTTC-GTT-T-AATGAATA---TT-A----TTATTCAT-TGGGGGGGGGGGGAGGGGGCTCC-ACAG--------TTAAGCTT---GCAG-CAACGT---------------ATGTT------TT------TCCTCACATATT-G---TACATGT----TT-CATT--GGAAATGATT---C----CT-A-TGAA-TA-TGGCT-GATT-GTA-TCTGGCAATATCGTTGTTT-AA--ACAGGTTGCCAAATTC----------AAA-ACTTTC-AGAT-----A-TGTA---CTTAGC-T-----A-T-CTCAC-CAG-T-GTTA--TATATATGGT----AAAG---A---AGAG---AA-C-TAATT-T--TT-CAGTATTGT-CTT------------------GAGTTAC-TAAT-CAAACGATTTATGA-T--A-TA--GA-CTTT--GA-CGCGTTG-CTAG--A-T-TTAT-TA-CACCTAAATAAGT-A-TT--GTTT--GCCTCGGTTGCAGAC-GT-TTTTCGATTA-----G-------ATG------AACCCAATCACATTCGTTTAA-AC--AACAG-TATA--CGC------CTCTTCA-GTGCAAAATA---TTTTTAAGTACGG-TCTAG-AAC---TC-GACTGTTCAAT-CACA-TGG-CA-------TA-C-TAG--AAT-ATT-TCAG-AACGCG-CAATACACTTCCG--CTAATC-GGTCTGAAAATGgctaggaaaggtgtagaattcaaaaaaaaatattttagaattaaaaaacttttgcagataattt
gi|4 : ACATTACATATTCATATTCACAAT-CGTTCTTT-GCG-CTTGCAT-GTGACTACATGTACATGTA-TCTATTGATTATCATTTTATTA-TTAT------TA------CTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTT------GAT-T-TATTTCTGTT-TTAATGAATA---CA-A----TTATTCAT-TAAGCAG---------------T-ATAG--------ATA---TT---TCAG-CAA-G----------------ATATT------TG------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTTGCT-G--T-GTAAACTGGCAAT-TCGT-GCTT-GA--A-TGGTCGCGAAATTC-GAA---ATCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGTGT----AAA----T---AGAG---AA-CCTAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCACCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATT------------------AATTG-T-T---CGC------C-CTTCA-GTGCAAAATA-----TTAAGGTACGGCCCTAGAAACGTGCA-GACTATTCAATCCACA-TTG-GAG------TACC-TGG-AAAC-A-T-TCAG-ACCGTG-CAATGTA-TTCCG--CT-ATCGGGTCTGGAAATGGAaggaggaaaatgggcttagaattcaaaagaaagtatatttagcattatagacttttgcataaataacttg
gi|5 : acCATATTCATCAA-CTTTTTTG-ACG-CT-GCAT-GTGACTA-----A-GTGTA-TCCATCAATTAATATTTCATTA-CAAT------TA------TTT---TCTTCATGCT-TTTGAT-------TTGTA-TTTTACTCAAAGT-CATTTTCAGTT-GATATCTATTTC-GTTATTAATGAATAATTCC-A----TTATTAATCTAAACAG---------------TCACAGC-------ATA---TT---GCAGACAA-G----------------ATATT------TT------T------------GGCACACACGTACTGCA-CATA--CATAAT-GTTATAC----CTCACT-AGACAATATCTAG--A-GTA--TCGGCAAT-TCGT-ACTT-GATAA-AGGTCGCGAAATTCAGAAACCTTCACA-ACTTT--ACAC--TACA---------------------G-TACTCAC-C---T-GTTA--TC-A-AGG-T----AAA----A---C-AG---AA-CCTAATT-TCTTT-CAGCATTGTACTTTAA--CA-ACTAAA--CTGA-TTAT-GAAT-CTA-CCATTCATGA-T--ATTACCGA-CTTT--GACCGCGT-GCCTAG--ATT-CTAC-TA--A-CTAAA-A-GTGACTT-CGTTT-C-CTTCG--TGCAAACAGTATTTTTG-TTC-----A-------A
gi|6 : aatactaa-CGTTCCG--TGTAGACCGT-ACAGCG-TTC-----T-------GTGC-----AGATCGCACA---GCGCTCCG-AGCAAACCG-T-TTCGCGCAAGAATC-GTTCC-GTACATGAT-------CAAACCACGCCCATAGAAAAGTGCA-CACTGTTCAAACCACACCCT-TAT------AACCTTAA-AGACTA-TGTTAA-A-CGTG-CAAGGCA-TTTCAGTCT-AT---ATCTGGAA
gi|7 : gttccgtgtagaccgtgcatatcgcacaaT--T-TA-CATA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-ATGGT----AAA----A---AGAG---AA-CATAATT-T--TT-CAGTATTGTACTT------------------GA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-TTAT-TA-CACCTAAA-AAGTGA-TT-TGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCATCCA---TTGTTTAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA---TTTTTAAGTACGGTCCTAGAAACGTGCA-GACTGTTCAATCCACA-TTG-CAT------TACC-TAG-AAAA-C-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGAcaggtggacgattttgagaaatcgagcaattatttcaatatctctcaaaggtagactttcaacagtgaaaatctgcaaataattgaaacaaaatacagtaattaaaagttttaaaaccaccagacagaacaaaattcgatacaatcgtagccctcatagaaatttcaacacccttgatagtctccaaagacaatttttttccattaaatatattttcatcaaaattgttta
gi|8 : AT-GAAA-CAA-CTCTC-AT-A-T--G-TACGCA-CT----GA-C---T-G-CCAG--A-C-CT--------CC---A-AGGTGT-TC-TGATT-CGTTCCA--TGCAAATCAT-CCTCCG-TTCCGTTTA-------ATTCCACTCAAACTGTTCA---TCGCTCCATATCAAAACG-C-T---TAT------T-CTTTA----TAAGAT-------CAAGCCATGCTCGTACAAACGTGCA-AACAATTCAAGCCACG-CC-------------CC-TAGCAAAC---T-GCAG-ACGGTG-CAAGCCA-TT--------------TCTGGAAAgaaaatggcttagaattcaaaagaaatattttagcattatagacttttgcaaataatttgaacaaaataatga
blockSeqs : TA . TT T T C TGTAC T T T . ATGTAATA TT . T AA T T C T A TAAGGTA C G TACGGGGGAAAAAACAATTTTTGCAGCAAGATATTTTTTTCCACACATATTGCTGCATTGTATACTG C T TA G TTTCA C C G GA T GG A ATT AT A T T TA C G AGAAACCT C TA AATTAGTGTAACCTTTATA A G GC A AG T T TTAA TTTTA . A C C CT . C TTAAAGATAAA G T T G T G . TAA T CT T A T C . TC . TC C A TAA C T T GT A A ATCGTTTA CACTC CATTCGTTTAAAC T A TCG AAGAATC T ATTTTTT AC G C CGTGATA G C AT G A T A C C GT A G
blockSeqs : CA . G . T . TGG T T C . TA T . T . T A . T . ATTCCA . G GGGGGGAGGGGGCTCCACAGTTAAGCTTGCAGCAACGTATGTTTTTCCTCACATATTG . . . . ATAC . . . G G GG . TA AA . . . . . C AAAT . G ACATTATGTACTAT . A AG . . . . T GA . . C . . . A TAACAACTAAA . . . A C G . AC . . C A . . . TT . C C T AC . . . . . . CGTTTA . TCGCTCCATATC . . A CT . ATTT TC . . TGGATT T . TA . . . A . C . . G
blockSeqs : TC . T . T . TGT . C T . TA T . A . . A . . . TTA . A TCACAGCATATTGCAGACAAGATATTTTTGGCA . . . . C . . . A G TG . T T . . . . . C GAAA . C TCATGTATGTACCT . . T . . . . . A . . A . . . A TTAAAATAAA . . . . . G . AT . . . C . . . T . C C T AC . . . . . . C . GCATTCTGTGC . . . T . ATTT GC . . TGGAGT . . A . . . A . C . . G
blockSeqs : . . G . . . A . . . . TA . . A . . . . . . CAA . . TATAGATATTTCAGCAAGATATTTGTG . . . . C . . . G A AT . T T . . . . . G . . . TTACATATGTACCT . . G . . . . . T . . . . . . A TTAAAATAA . . . . . G . A . . . C . . . T . C C T AC . . . . . . A . TTGTTTAAACC . . . C . ATA GC . . CTTATA . . A . . . G . T . . G
blockSeqs : . . . . C . . . . . C . A . . . . . . G . . . ATGTACTTAGCT . . G . . . . . A . . . . . . A . . . . . . G . A . . . C . . . T . C C T AA . . . . . . G . GCGCTCCGAGC . . . C . AT GC . . TGCATT . . A . . . G . C . . .
blockSeqs : . . TACA . . G . . . . . A . . . . . . . . . . . . . G . A . . . C . . . T . . C T AG . . . . . . A . TTGTTTAAACC . . . C . . CC . . GGCAT . . A . . . A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . C . . . C . . . T A . . . . . . A . TCGTGCAAG . . . T . . GT . . AC . . A . . . C . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . T . CG . . . . . . CT . . C . . C . . . . .
blockSeqs : . . . . A . . . . . G . . C . . . . .
blockSeqCons : TGN** ** TA************ TTA******** A******* *** TTAAAATAAA****** ** ATT**** GC CGATC********
originalCons : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATG-A-ATGTA-TCTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATAT-TATTTCTGTT-TTAATGAATA---TA-A----TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCGTTCA---TCGTTCAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATA---TTTTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACA-TCG-GAT------TACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
finalCons : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATGN--ATGTA--CTATTAATTATTATTTTATTA-CTATTA------------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATAT-TATTTCTGTT-TTAATGAATATTA--------TTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAAA-------AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTAAAATAAA------CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGTGA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------ATGC-----AAACCGTTCA---TCGTTCAA-ACCAAACCG-T-T---CGC------C-CTTCA-GTGCAAAATATT----TAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACA-TCGATC--------ACC-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAAACGTTTCATTTCATTGCGTTCAGACTGCTCAGCGTTTTGTCCAAATCATTCAGATTCCGTTCGTGTGCAAATAATTGTGTGCAGGAGTCGTTCCATGCAAGATAAAATCAAATCATAAAGCATACAACATTTTCATGTCATTCCATACAAACTTGTAGACCGTGCAGACTACTATACCATAGCGAAATGGGACAATGGAAATTCAAACATTTTAAAATCTCTCTAATATAGGCTTTCAGTATTAAAACCCCTGCAGATAATTTGAA
Unaligned ( gi|14 ): ATTACACCATTAAAACTTGCAGACTGTACGAAACATACAAGCATTCCACTAAGGGATTTGGAAAAGGTGGACGTTCATGAAAATTGAGTAATTATTTCAAAATTCACAAAGATGGACTTAACAGTGAATATCTGGCAAATAACCTTGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 33333333 22222222222222 11 1 1 333333333 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111 1111 22 11111111 11 555555555555555555555555555 1 1111 22222222 111 1 2222222222222222 1111 2222222222222 11111 111111111111111 1111111111 22222222 66666666666666
lowQualScore : 0 22 8 88 8 0 8 0 3 22222222 0 5 3 8 88888888888888 88 8 1 0 0 11 0 0 5 0 5 8 5 8 0 444444444 8 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 6 99 6 88888888 6 6 6 77 5 33 6 1111 33 6 6 6 99 6 1 88888888 5 66 333333333333333333333333333 5 0 999 5 66 5 5 5555 00000000 000 5 7 5 77 5 4 7777777777777777 5 4 4 8 8 1 4 0000 4 66 8 1 4 4 66 777 4 55 3 888 777 4 4 4 55 4 4 0000000000000 00000 777777777777777 8 4 4 5555555555 4 88888888 8 33 4 0 11111111111111 4 8 4 666 4 4 0 4 2 4 0 77 5 0
lowQualScore : . .. . .. . . . . . ........ . . . . .............. .. . . . . .. . . . . . . . . . ......... . . ...................................................................................................... . . .. . ........ . . . .. . .. . .... .. . . . .. . . ........ . .. ........................... . . ... . .. . . .... ........ ... . . . .. . . ................ . . . . . . . .... . .. . . . . .. ... . .. . ... ... . . . .. . . ............. ..... ............... . . . .......... . ........ . .. . . .............. . . . ... . . . . . . . .. . .
lowQualScore : 8 00 0 66 0 6 0 8 8 22222222 8 6 8 0 00000000000000 88 0 4 8 8 00 8 8 6 8 8 0 4 0 8 222222222 0 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 7 22 7 55555555 7 7 7 77 2 55 7 2222 00 7 7 7 22 7 0 44444444 0 99 888888888888888888888888888 0 0 444 0 99 0 0 6666 33333333 000 7 1 7 99 7 9 0000000000000000 7 4 4 9 9 1 4 3333 4 11 9 1 4 4 11 000 4 66 9 222 888 4 4 0 55 0 0 5555555555555 00000 444444444444444 0 0 0 3333333333 4 99999999 4 99 0 9 66666666666666 0 0 0 333 0 0 7 4 4 4 2 99 7 7
consensus : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATGTA--TGTA--CTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATAT-TATTTCTGTT-TTAATGAATA-TA---T--ATTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGT---GA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------AT-----GCAAACCGTTCA---TCGTTCAA-ACCAAACCG-T-T-CGC--------C-CTTCA-GTGCAAAATA----TTTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACATCG-G-AT------TAC-C-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
Reference ( family-3831 ) : NNACATTACATATTCATATTCACAAA-CTTTCTTT-GCG-CTTGCAT-GTGACTACATGNA--TGTA--CTATTAATTATTATTTTATTA-CTAT------TA------TTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATAT-TATTTCTGTT-TTAATGAATA-T----T--ATTATTCAT-TAAGCAG---------------T-ACAG--------ATAA--TT---GCAG-CAA-G----------------ATATT------TT------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGCAAT-TCGT-GCTT-GA--A-AGGTCGCNAAATTC-GAA---TTCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----A---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGT---GA-TT-CGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------AT-----GCAAACCGTTCA---TCGTTCAA-ACCAAACCG-T-T-CGC--------C-CTTCA-GTGCAAAATA----TTTAAGGTACGGCCCTAGAAACGTGCA-GACTGTTCAATCCACATC--G-AT------CAC-C-TAG-AAAC-A-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGA
gi|1 : ATTACATATTCATATTCACAAAACTTTCTTT-GCG-CT-GCAT-GTGACTACA---A--TGTAATCTATTAAT-ATTATTTCATTAACTAT------TACATGTATTT-GTTCTTCATGCTGTTTGATATTGATTTTGTAGTTTTACTTA--GTTTATCTTCAGTTTGAT-T-TATTT-------TAATGACTA-TA---T--ATTATCCAT-TAAGCAG---------------T-ACAA--------ATA---TT---GCAG-CCA-G----------------ATATT------TT------TTCCACAACATATG---TACATGAA-TACT-CATT--GGAAAT-AGT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAA-CCGACATT-TCGT-GCTT-GA--A-ATGTCG-TAAATTC-AAA---TTCAGA-ACTTT--ACAT-----A-TGTACAGTGTA-C-T-----A-TA-TCAC-C-G-T-GTTA--TA-A-AGGGT----AAA----
gi|1 : acataaAT-GAAT-CA--CGCTT-ATGAGT--A-TACCGA-CTTT--GA-CGAGT-G-CTAGTGA-T-ATACATA-CACCAAAA-ACGA---GA-TT-CGATT-CGCTCCtttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|1 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------AT-----ACAAACCATTCA---TTGTTTAA-ACCAAACCG-T-T-CGC--------C-CTTCA-GTGCAAAATA----TT--AGGTATGA-CCTAGAAACGTGCA-TACTGTTCAATCCACATTG-G-ATTACATGTAC-C-TAG-AAAC-A-T-TCAG-ACCGTG-CAATACA-TACCG--CT-ATCGGGCCTGGAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgattcgctccgtgcagaccgtttttcgttcaatacaaaccattcattgtttaaaccaaaccgttcgcccttcagtgcaaaatattaggtatgacctagaaacgtgcatactgttcaatccacattggattacatgtacctagaaacattcagaccgtgcaatacataccgctatcgggcctggaaatgaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|10 : acataaattacatattcatattcacaaaactttctttgcgctgcatgtgactacaatgtaatctattaatattatttcattaactattacatgtatttgttcttcatgctgtttgatattgattttgtagttttacttagtttatcttcagtttgatttattttaatgactatatattatccattaagcagtacaaatattgcagccagatattttttccacaacatatgtacatgaatactcattggaaatagtcctatagtagtggctgtgtaaccgacatttcgtgcttgaaatgtcgtaaattcaaattcagaactttacatatgtacagtgtactatatcaccgtgttataaagggtaaatttttaatgaatcacgcttatgagtataccgactttgacgagtgctagtgatatacatacaccaaaaacgagattcgattcgctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcgaagatgaCCG--TGCAGACCGT-TTTTCG-TTC-----ATCGTTTAAT-----CGAAACCGTTCA----CG---------AAACCG-T-T-CGT--------T-CTTCA-GTGCAAAATA----TA-AAGGTACGACCCTAGAAACGTGCA-GGCTGTTCAATCCACCTC--------------C-C-TAG-AAAC-A-T-TCAG-ACCGTG-CATTACT-TTCCG--CT-ATCGGGTCTGGAATTGGAaggaaaatggcttagaattcaaaaaaatattttagaatacttttggatagacttttgcagataattg
gi|11 : AA---TTCAGA-ACTTTG-ACATAAT-TAGTGTA------ACC-TTTATAA-TACACACGC-T-TAGCTA--AA-T-AGGGTT---AAA----ACATAGAGTGAAA-C-TAATT-T--TTTCAGTGCTGTCCTTTTATAAA-A-TAAATACTGA-TTATTGAAT-CAA-CGATT-ATGA-TTAA-TACCGA-C-----GA-CGAGT-G-CT-G--A-TCCTAC-TATCACTAAAA-ACGT---GA-TT-Cggaattcaaaggaaatattctagaattac
gi|12 : A---TTCAAA---CTT--ACAT--A-CA-T-TA---TGTACTAT-----AATACCCACAC-GCT-AATAAGCA-A-AGGGC----AAA----A---AGAG---AAAC-AAATTCT--TT-CAGTGT-GTCCTTTTA--AAGA-TAAA--CTGA-TTAT-GAATTCAAGCGATT-ATGA-T--ACTACCGATCTTTCTGATCGAGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGT---GA-TT-CGCTT-
gi|13 : T-----GCGAACCGTT-----TCGTGCAA-G---AATCA-T-T------------------ATGTACACGAT-------TAAGCCACATCCATCGAAACGTGCA-GACCGTTTAA--AACAT-----AC--------C-C-TAA-AATT-A-T-TGA--ACCGTGTCAGT-CA-TT
gi|15 : gT------T------------G---TAAATATA-TACT-CACTTAAGAAAT-ATT---TTTCACT-A-T-A--TATTC-CT-A--TAGTA-TCCGGCAAT-TCGT-ACTT-AA--A-AGGTCGCGAAATTC-AAA---TTCAAGCATTTTTAACAT--T-Ctagtatgcaataggtggacatttttggaaattttggtaattaatatcaaaatgttgactttcaacattgaaa
gi|16 : ttctaacacaaatacTCCG--TACAGGCCGT-TCGGTG-TTC-----C-------GT-----GAAAACCGTTCA---GCATTCTG-TGCAGATCG-T-T-CAC--------
gi|17 : aaaccgttcagagttctgtacagaccaacaacattcagtatCGGCCCTAGAAACGTGCA-GACCGTGCAGTCCACATTG-G-AT------TAC-C-TAG-AAAC-A-T-TCAG-A
gi|2 : ACATTACATATTCATA------AA-CTTTCTTTTGCG-CTTGCATCGTGACTACATGGA--T-----CTATTAATTAT-ATTTTATTA-CTACATGTAATA------TTTTGTTCTTCATGAT-TTTGTTATTGATTTTGTAGTTTTACTTA--GTTCATTTTCAGTTTGATTT-TATTTCTGTT-TTAATGAATA-TAAGGT--ATTATTTAA-TAC-CAG---------------T-ACGGGGGAAAAAACAA--TTTTTGCAG-CAA-GATATTTTTTTCCACACATATTGCTGCATTGTATACT------------G---TACATGTA-TACTTCATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTGGCT-G--T-GTAATCCGGC------GT-GTTTTGA--A-AGGTCGCCAAATT-----------AAA-ACTAT--ACAT---------------------------A-TACTCAC-C-G-T-GTTA--TA-A-AGGGTTTAAAAATTTTA---AGAG---AA-C-TAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAA---CTGA-TTAT-GA-----------T-AT--------TACCGC-TTTT--GA-TGCGT-G-CTAG--G------------A--TAAA---GT---GA-TTTCGTTTTCGCTCCT--TGCAGACCGT-TTTTCG-TTC-----A-------AT-----GCAAACCATTCA---TTGTTTAA-ACCAAACCATT-T-CGC--------C-CTTCA-GTGCAAAACATTTTTTTAA-GTACGGCCCTAGAAACGTGCAGGACTGTTCAATCCACATCGTG-AT------AAC-CGTAG-AAAC-A-T-TCAGAACCGCG-CAATACA-TT-CG--CT-ATCGGGTC-GGAAATGGA
gi|3 : TTACATAAATATGTTCATAAA-CTTTCTTG-GCGTCTTGCAG-TTGACTACATGTA--TGTA--GTATTA----TTGCTTTATTA-ATTT------TA------TT--GTTCTTAATGCT-TTTGTTACTTGTTTTGT-GTTTTACATA--GTTG---TTCAGTTTG-TAT-TATTTC-GTT-T-AATGAATA-T----T--ATTATTCAT-TGGGGGGGGGGGGAGGGGGCTCC-ACAG--------TTAAGCTT---GCAG-CAACGT---------------ATGTT------TT------TCCTCACATATT-G---TACATGT----TT-CATT--GGAAATGATT---C----CT-A-TGAA-TA-TGGCT-GATT-GTA-TCTGGCAATATCGTTGTTT-AA--ACAGGTTGCCAAATTC----------AAA-ACTTTC-AGAT-----A-TGTA---CTTAGC-T-----A-T-CTCAC-CAG-T-GTTA--TATATATGGT----AAAG---A---AGAG---AA-C-TAATT-T--TT-CAGTATTGT-CTT------------------GAGTTAC-TAAT-CAAACGATTTATGA-T--A-TA--GA-CTTT--GA-CGCGTTG-CTAG--A-T-TTAT-TA-CACCTAAATAAGT----A-TT--GTTT--GCCTCGGTTGCAGA-CGT-TTTTCGATTA-----G-------AT-----G-AACCCAATCACATTCGTTTAA-AC--AACAG-TATACGC--------CTCTTCA-GTGCAAAATATT--TTTAA-GTACGG-TCTAG-AAC---TC-GACTGTTCAAT-CACATG--G---------CATAC-TAG--AAT-ATT-TCAG-AACGCG-CAATACACTTCCG--CTAATC-GGTCTGAAAATGgctaggaaaggtgtagaattcaaaaaaaaatattttagaattaaaaaacttttgcagataattt
gi|4 : ACATTACATATTCATATTCACAAT-CGTTCTTT-GCG-CTTGCAT-GTGACTACATGTACATGTAT-CTATTGATTATCATTTTATTA-TTAT------TA------CTT-GTTCTTCATGCT-TTTGATATTGATTTTGTAGTTTTACTTA--GTTCATTTT------GAT-T-TATTTCTGTT-TTAATGAATA-C----A--ATTATTCAT-TAAGCAG---------------T-ATAG--------ATA---TT---TCAG-CAA-G----------------ATATT------TG------T------------G---TACATGTA-TACT-CATT--GGAAAT-ATT---C----CT-A-T-AG-TAGTTGCT-G--T-GTAAACTGGCAAT-TCGT-GCTT-GA--A-TGGTCGCGAAATTC-GAA---ATCAAA-ACTTT--ACAT--T-CA-TGTA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-AGTGT----AAA----T---AGAG---AA-CCTAATT-T--TT-CAGTATTGTACTTTTA--AA-A-TAAA--CTGA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-CTAC-TA-CACCTAAA-ACGT---GA-TT-CGTTT-CGCACCG--TGCAGACCGT-TTTTCG-TTC-----A-------AT-----GCAAACCATT------------------AATTG-T-T-CGC--------C-CTTCA-GTGCAAAATA-----TTAAGGTACGGCCCTAGAAACGTGCA-GACTATTCAATCCACATTG-G-AG------TAC-C-TGG-AAAC-A-T-TCAG-ACCGTG-CAATGTA-TTCCG--CT-ATCGGGTCTGGAAATGGAaggaggaaaatgggcttagaattcaaaagaaagtatatttagcattatagacttttgcataaataacttg
gi|5 : acCATATTCATCAA-CTTTTTTG-ACG-CT-GCAT-GTGACTAAGTGTA--T-----CCATCAATTAATATTTCATTA-CAAT------TA------TTT---TCTTCATGCT-TTTGAT-------TTGTA-TTTTACTCAAAGT-CATTTTCAGTT-GATATCTATTTC-GTTATTAATGAATAAT----TCCATTATTAATCTAAACAG---------------TCACAGC-------ATA---TT---GCAGACAA-G----------------ATATT------TT------T------------GGCACACACGTACTGCA-CATA--CATAAT-GTTATAC----CTCACT-AGACAATATCTAG--A-GTA--TCGGCAAT-TCGT-ACTT-GATAA-AGGTCGCGAAATTCAGAAACCTTCACA-ACTTT--ACAC--TACA---------------------G-TACTCAC-C---T-GTTA--TC-A-AGG-T----AAA----A---C-AG---AA-CCTAATT-TCTTT-CAGCATTGTACTTTAA--CA-ACTAAA--CTGA-TTAT-GAAT-CTA-CCATTCATGA-T--ATTACCGA-CTTT--GACCGCGT-GCCTAG--ATT-CTAC-TA--A-CTAAA-A-GT---GACTT-CGTTT-C-CTTCG--TGCAAACAGTATTTTTG-TTC-----A-------A
gi|6 : aatactaa-CGTTCCG--TGTAGACCGT-ACAGCG-TTC-----T-------GT-----GCAGATCGCACA---GCGCTCCG-AGCAAACCGTT-T-CGCGCAAGAATC-GTTCC-GTAC---ATG----ATCAAACCACGCCCATAGAAAAGTGCA-CACTGTTCAAACCACACCCTT-AT------AAC-CTTAA-AGACTA-TGTTAA-A-CGTG-CAAGGCA-TTTCAGTCT-AT---ATCTGGAA
gi|7 : gttccgtgtagaccgtgcatatcgcacaaT--T-TA-CATA---TGTACC-T-----A-TACTCAC-C-G-T-GTTA--TA-A-ATGGT----AAA----A---AGAG---AA-CATAATT-T--TT-CAGTATTGTACTT------------------GA-TTAT-GAAT-CAA-CGATT-ATGA-T--A-TACCGA-CTTT--GA-CGCGT-G-CTAG--A-T-TTAT-TA-CACCTAAA-AAGT---GA-TT-TGTTT-CGCTCCG--TGCAGACCGT-TTTTCG-TTC-----A-------AT-----GCAAACCATCCA---TTGTTTAA-ACCAAACCG-T-T-CGC--------C-CTTCA-GTGCAAAATATT--TTTAA-GTACGGTCCTAGAAACGTGCA-GACTGTTCAATCCACATT--GCAT------TAC-C-TAG-AAAA-C-T-TCAG-ACCGCG-CAATACA-TTCCG--CT-ATCGGGTCTGGAAATGGAcaggtggacgattttgagaaatcgagcaattatttcaatatctctcaaaggtagactttcaacagtgaaaatctgcaaataattgaaacaaaatacagtaattaaaagttttaaaaccaccagacagaacaaaattcgatacaatcgtagccctcatagaaatttcaacacccttgatagtctccaaagacaatttttttccattaaatatattttcatcaaaattgttta
gi|8 : AT-GAAA-CAA-CTCTC-AT-A-T--G-TACGCA-CT----GA-C---T-G-CCAG--A-C-CT---------CCAAG-GTGTTCTGA-TT-CGT------TCCA--TGCAAATCAT-CCTCCG-TTCCGTTTA-------ATTCCACTCAAACTGTTCA---TCGCTCCATATCAAAACG-C-T-TAT--------T-CTT----TATAAGA-------TCAAGCCATGCTCGTACAAACGTGCA-AACAATTCAAGCCACGCC--------------C-C-TAGCAAAC---T-GCAG-ACGGTG-CAAGCCA-TTTCgaaaatggcttagaattcaaaagaaatattttagcattatagacttttgcaaataatttgaacaaaataatga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAAACGTTTCATTTCATTGCGTTCAGACTGCTCAGCGTTTTGTCCAAATCATTCAGATTCCGTTCGTGTGCAAATAATTGTGTGCAGGAGTCGTTCCATGCAAGATAAAATCAAATCATAAAGCATACAACATTTTCATGTCATTCCATACAAACTTGTAGACCGTGCAGACTACTATACCATAGCGAAATGGGACAATGGAAATTCAAACATTTTAAAATCTCTCTAATATAGGCTTTCAGTATTAAAACCCCTGCAGATAATTTGAA
Unaligned ( gi|14 ): ATTACACCATTAAAACTTGCAGACTGTACGAAACATACAAGCATTCCACTAAGGGATTTGGAAAAGGTGGACGTTCATGAAAATTGAGTAATTATTTCAAAATTCACAAAGATGGACTTAACAGTGAATATCTGGCAAATAACCTTGAA