lowQualScore : 111 11 1
lowQualScore : 3 44 3 7 3 99999 3 3 44 3 000 3 3 66 2 2 2 88 4 8 6
lowQualScore : . .. . . . ..... . . .. . ... . . .. . . . .. . . .
lowQualScore : 6 99 6 3 6 11111 3 2 22 3 444 8 1 88 9 9 2 99 0 0 0
consensus : ACTGTAAA-A-ATTC-TTT-G-A-----GTTAT-CACGTC--A-AAACA--AAAATGTCC-ATAACAACAAAGATGTTGCC-A-TACATACATACAG-ACAG-ACAAGGTGA
Reference ( gi|3 ) : ACTGTAAA-A-ATTC-TTT-G-A-----GTTAT-CACATC--A-AAACG--AAAATGTCC-ATAACAACAAAGATGTTGCC-A-TACATAC-TACAG-ACAG-AC-AGGTGA
gi|2 : ACTGTAAA-A--TTC-TTT-G-A-----GTTAT-CACTCC--A-AAACA--AAAACGTCC-GTAACAACAAAAATGTTGCC-A-TACATACATACCG-ACAG-ACAAGGTGA
gi|10 : ACTGTAAA-A-GCTC-TTT-G-A-----GTTATTCATGTC--A-GAACA--AAAAATTCC-ATAACAACAAAGATGTTGCC-A-TACATc
gi|7 : ACTGTAAA-A-ATTCTTTT-G-A-----GATTT-CACGTCCAA-AAAC---AAAAT-TCT-AT---AACAAAGA-GTTGCC-A-TACA----TACAG-ACAG-AC-
gi|9 : ATTGTAGAGA-ATTT-TTT-G-AAATGTGTTAT-TACATC--A-AAACA--AAAATGTTC-ATCAAAACAAAGATTTTGAC-AGTATATac
gi|16 : tACTGTAAA-A-ATTC-TTT-G-A-----GTTAT-CACGTC--
gi|1 : tCTGTAAA-AAATTC-TTT-G-A-----GTTAT-CACATC--A-AAACGAAAAAATGTCCAATAACAACAAAGATGTTGCC-A-TACATACATACAGAACAG-ACAAGGTGA
gi|6 : CTGTAAA-A-ATTC-TTT-A-A-----GTTAT-TACATC--A-AAACA--AAAATGTCC-ATAACAACAAAGATGTTGTC-A-TACA----TACAG-ACAG-AC-AAG
gi|4 : CTGTACA-A-ACTC-TT--G-A-----GTTAT-CACGTC--A-AAACA--AAAATGT---A-AATAACAAAGATGTTGCC-A-TACATACATACAG-ACAGAAA-AGGTGAg
gi|5 : CTGTACA-A----C-TCT-GGA-----GTTAT-CACGTC--A-AACAA--AAAATGT---A-AATAACAAAGATGTTGCC-A-TACATACATACAG-ACAGAAA-AGGTGAc
gi|12 : TGAA-A-ACTC-TTTTG-A-----GTTAT-CGCGTC--A-AAACA--AACATGTTT-ACCACAACAAAGATGTTGAC-A-TACATAC-c
gi|11 : A-A-ATTC-TTTTG-A-----GTTAT-CGCGTC--ATAAGAA--AAAATGTTC-AACACAACAAAGATGTTGAC-A-TACAaa
gi|13 : -CACGTC--A-AAACA--AAAATGTCC-ATAACAAGAAAGATTTTGCC-A-CACATACAGACAG-ACAG-ACAAGGTGAgtcagac
gi|8 : --A-AAAGA--AAAATGTTC-ACCACAACAAAGATGTTGGC-A-TACAGAC-T---G-ATAA-ACAAGGCGAc
gi|14 : attgtataatgattttgtgAACG--AAAGTATTC-ATCACAACAAAGATGTTGTC-A--A-------ACAG-ACA-----AGGTGAtg
gi|15 : AAAGATTTTGCCGA-TACATAC----AT-ACAG-AC-AGGcg
Alignments
lowQualScore : 1
lowQualScore : 3 33 0 3 88888 3 33 3 33 2 44 44444 3
lowQualScore : . .. . . ..... . .. . .. . .. ..... .
lowQualScore : 3 88 0 3 33333 1 99 1 99 9 99 99999 3
consensus : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACGTC--A-AAAC--AAAAATGTCCA-TAACAACAAAGATGTTGCC-A-TACATACATACAG-ACAGACAAGGTGA
Reference ( family-3803 ) : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACGTC--A-AAAC--AAAAATGTCCA-TAACAACAAAGATGTTGCC-A-TACATACATACAG-ACAGACAAGGTGA
gi|1 : CTGTAAA-AAATTCTTT-G-A-----GTTAT-CACATC--A-AAACGAAAAAATGTCCAATAACAACAAAGATGTTGCC-A-TACATACATACAGAACAGACAAGGTGA
gi|10 : ACTGTAAA-AG-CTCTTT-G-A-----GTTATTCATGTC--A-GAAC--AAAAAATTCCA-TAACAACAAAGATGTTGCC-A-TACAT
gi|11 : A-AA-TTCTTTTG-A-----GTTAT-CGCGTC--ATAAGA--AAAAATGTTCA-ACACAACAAAGATGTTG----------ACATACAG-TCAGAC
gi|12 : TGAA-AA-CTCTTTTG-A-----GTTAT-CGCGTC--A-AAAC--AAACATGTTTA-CCACAACAAAGATGTTGAC-A-TACATACA
gi|13 : -CACGTC--A-AAAC--AAAAATGTCCA-TAACAAGAAAGATTTTGCC-A-CACATACAGACAG-ACAGACAAGGTGAa
gi|14 : AAC--GAAAGTATTCA-TCACAACAAAGATGTTGT--------------CAA-ACAGACAAGGTGAc
gi|15 : AAAGATTTTGCCGA-TACATACATACAG-ACAGcg
gi|16 : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACGTC--gg
gi|2 : tACTGTAAA-A--TTCTTT-G-A-----GTTAT-CACTCC--A-AAAC--AAAAACGTCCG-TAACAACAAAAATGTTGCC-A-TACATACATACCG-ACAGACAAGGTGA
gi|3 : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACATC--A-AAAC--GAAAATGTCCA-TAACAACAAAGATGTTGCC-A-TACATAC-TACAG-ACAGAC-AGGTGAc
gi|4 : CTGTACA-AA-CTCTT--G-A-----GTTAT-CACGTC--A-AAAC--AAAAATGT--A--AATAACAAAGATGTTGCC-A-TACATACATACAG-ACAGAAAAGGTGA
gi|5 : CTGTACA-A----CTCT-GGA-----GTTAT-CACGTC--A-AACA--AAAAATGT--A--AATAACAAAGATGTTGCC-A-TACATACATACAG-ACAGAAAAGGTGAc
gi|6 : CTGTAAA-AA-TTCTTT-A-A-----GTTAT-TACATC--A-AAAC--AAAAATGTCCA-TAACAACAAAGATGTTGT------CATACATACAG-ACAGACAAGGc
gi|7 : ACTGTAAA-AA-TTCTTTTG-A-----GATTT-CACGTCCAA-AAAC--AAAA-T-TCTA-TAACAA---AGA-GTTGCC-A-TACATACAGACAG-ACA
gi|8 : GTG--A-AAAG--AAAAATGTTCA-CCACAACAAAGATGTTG------GCATACAGACTG-ATAAACAAGGCGAac
gi|9 : attgtataatgattttATTGTAGAGAA-TTTTTT-G-AAATGTGTTAT-TACATC--A-AAAC--AAAAATGTTCA-TCAAAACAAAGATTTTGAC-AGTATATtg
Alignments
lowQualScore : 1
lowQualScore : 3 33 0 3 88888 3 33 3 33 2 44 44444 3
lowQualScore : . .. . . ..... . .. . .. . .. ..... .
lowQualScore : 3 88 0 3 33333 1 99 1 99 9 99 99999 3
consensus : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACGTC--A-AAAC--AAAAATGTCCA-TAACAACAAAGATGTTGCC-A-TACATACATACAG-ACAGACAAGGTGA
Reference ( family-3803 ) : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACGTC--A-AAAC--AAAAATGTCCA-TAACAACAAAGATGTTGCC-A-TACATACATACAG-ACAGACAAGGTGA
gi|1 : CTGTAAA-AAATTCTTT-G-A-----GTTAT-CACATC--A-AAACGAAAAAATGTCCAATAACAACAAAGATGTTGCC-A-TACATACATACAGAACAGACAAGGTGA
gi|10 : ACTGTAAA-AG-CTCTTT-G-A-----GTTATTCATGTC--A-GAAC--AAAAAATTCCA-TAACAACAAAGATGTTGCC-A-TACAT
gi|11 : A-AA-TTCTTTTG-A-----GTTAT-CGCGTC--ATAAGA--AAAAATGTTCA-ACACAACAAAGATGTTG----------ACATACAG-TCAGAC
gi|12 : TGAA-AA-CTCTTTTG-A-----GTTAT-CGCGTC--A-AAAC--AAACATGTTTA-CCACAACAAAGATGTTGAC-A-TACATACA
gi|13 : -CACGTC--A-AAAC--AAAAATGTCCA-TAACAAGAAAGATTTTGCC-A-CACATACAGACAG-ACAGACAAGGTGAa
gi|14 : AAC--GAAAGTATTCA-TCACAACAAAGATGTTGT--------------CAA-ACAGACAAGGTGAc
gi|15 : AAAGATTTTGCCGA-TACATACATACAG-ACAGcg
gi|16 : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACGTC--gg
gi|2 : tACTGTAAA-A--TTCTTT-G-A-----GTTAT-CACTCC--A-AAAC--AAAAACGTCCG-TAACAACAAAAATGTTGCC-A-TACATACATACCG-ACAGACAAGGTGA
gi|3 : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACATC--A-AAAC--GAAAATGTCCA-TAACAACAAAGATGTTGCC-A-TACATAC-TACAG-ACAGAC-AGGTGAc
gi|4 : CTGTACA-AA-CTCTT--G-A-----GTTAT-CACGTC--A-AAAC--AAAAATGT--A--AATAACAAAGATGTTGCC-A-TACATACATACAG-ACAGAAAAGGTGA
gi|5 : CTGTACA-A----CTCT-GGA-----GTTAT-CACGTC--A-AACA--AAAAATGT--A--AATAACAAAGATGTTGCC-A-TACATACATACAG-ACAGAAAAGGTGAc
gi|6 : CTGTAAA-AA-TTCTTT-A-A-----GTTAT-TACATC--A-AAAC--AAAAATGTCCA-TAACAACAAAGATGTTGT------CATACATACAG-ACAGACAAGGc
gi|7 : ACTGTAAA-AA-TTCTTTTG-A-----GATTT-CACGTCCAA-AAAC--AAAA-T-TCTA-TAACAA---AGA-GTTGCC-A-TACATACAGACAG-ACA
gi|8 : GTG--A-AAAG--AAAAATGTTCA-CCACAACAAAGATGTTG------GCATACAGACTG-ATAAACAAGGCGAac
gi|9 : attgtataatgattttATTGTAGAGAA-TTTTTT-G-AAATGTGTTAT-TACATC--A-AAAC--AAAAATGTTCA-TCAAAACAAAGATTTTGAC-AGTATATtg
blockSeqs : G G T G AATGT T CA T . C T CCGA .
blockSeqs : . A T . . . . . . T A ACAG .
blockSeqs : . A T . . . . . . T C CCA .
blockSeqs : . A . . . . . . . C T ACA .
blockSeqs : . A . . . . . . . T T CCA .
blockSeqs : . A . . . . . . . C T CCA .
blockSeqs : . A . . . . . . . C T CCA .
blockSeqs : . A . . . . . . . C T CCA .
blockSeqs : . A . . . . . . . C T CCA .
blockSeqs : . . . . . . . . . T C CCA .
blockSeqs : . . . . . . . . . T T T .
blockSeqs : . . . . . . T
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : A* ** T*
originalCons : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACGTC--A-AAAC--AAAAATGTCCA-TAACAACAAAGATGTTGCC-A-TACATACATACAG-ACAGACAAGGTGA
finalCons : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACGTC--A-AAAC--AAAAATGTCCAT-AACAACAAAGATGTTGCC-A-TACATACATACAG-ACAGACAAGGTGA
Alignments
lowQualScore : 1
lowQualScore : 3 33 0 3 88888 3 33 3 33 2 44 44444 3
lowQualScore : . .. . . ..... . .. . .. . .. ..... .
lowQualScore : 3 88 0 3 33333 1 99 1 99 9 99 99999 3
consensus : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACGTC--A-AAAC--AAAAATGTCCA-TAACAACAAAGATGTTGCC-A-TACATACATACAG-ACAGACAAGGTGA
Reference ( family-3803 ) : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACGTC--A-AAAC--AAAAATGTCCA-TAACAACAAAGATGTTGCC-A-TACATACATACAG-ACAGACAAGGTGA
gi|1 : CTGTAAA-AAATTCTTT-G-A-----GTTAT-CACATC--A-AAACGAAAAAATGTCCAATAACAACAAAGATGTTGCC-A-TACATACATACAGAACAGACAAGGTGA
gi|10 : ACTGTAAA-AG-CTCTTT-G-A-----GTTATTCATGTC--A-GAAC--AAAAAATTCCA-TAACAACAAAGATGTTGCC-A-TACAT
gi|11 : A-AA-TTCTTTTG-A-----GTTAT-CGCGTC--ATAAGA--AAAAATGTTCA-ACACAACAAAGATGTTG----------ACATACAG-TCAGAC
gi|12 : TGAA-AA-CTCTTTTG-A-----GTTAT-CGCGTC--A-AAAC--AAACATGTTTA-CCACAACAAAGATGTTGAC-A-TACATACA
gi|13 : -CACGTC--A-AAAC--AAAAATGTCCA-TAACAAGAAAGATTTTGCC-A-CACATACAGACAG-ACAGACAAGGTGAa
gi|14 : AAC--GAAAGTATTCA-TCACAACAAAGATGTTGT--------------CAA-ACAGACAAGGTGAc
gi|15 : AAAGATTTTGCCGA-TACATACATACAG-ACAGcg
gi|16 : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACGTC--gg
gi|2 : tACTGTAAA-A--TTCTTT-G-A-----GTTAT-CACTCC--A-AAAC--AAAAACGTCCG-TAACAACAAAAATGTTGCC-A-TACATACATACCG-ACAGACAAGGTGA
gi|3 : ACTGTAAA-AA-TTCTTT-G-A-----GTTAT-CACATC--A-AAAC--GAAAATGTCCA-TAACAACAAAGATGTTGCC-A-TACATAC-TACAG-ACAGAC-AGGTGAc
gi|4 : CTGTACA-AA-CTCTT--G-A-----GTTAT-CACGTC--A-AAAC--AAAAATGT--A--AATAACAAAGATGTTGCC-A-TACATACATACAG-ACAGAAAAGGTGA
gi|5 : CTGTACA-A----CTCT-GGA-----GTTAT-CACGTC--A-AACA--AAAAATGT--A--AATAACAAAGATGTTGCC-A-TACATACATACAG-ACAGAAAAGGTGAc
gi|6 : CTGTAAA-AA-TTCTTT-A-A-----GTTAT-TACATC--A-AAAC--AAAAATGTCCA-TAACAACAAAGATGTTGT------CATACATACAG-ACAGACAAGGc
gi|7 : ACTGTAAA-AA-TTCTTTTG-A-----GATTT-CACGTCCAA-AAAC--AAAA-T-TCTA-TAACAA---AGA-GTTGCC-A-TACATACAGACAG-ACA
gi|8 : GTG--A-AAAG--AAAAATGTTCA-CCACAACAAAGATGTTG------GCATACAGACTG-ATAAACAAGGCGAac
gi|9 : attgtataatgattttATTGTAGAGAA-TTTTTT-G-AAATGTGTTAT-TACATC--A-AAAC--AAAAATGTTCA-TCAAAACAAAGATTTTGAC-AGTATATtg